Sed0026942 (gene) Chayote v1

Overview
NameSed0026942
Typegene
OrganismSechium edule (Chayote v1)
DescriptionAnkyrin repeat-containing protein
LocationLG06: 373733 .. 374068 (-)
RNA-Seq ExpressionSed0026942
SyntenySed0026942
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGGATATTTACTCTCAATTCTAAAAGTAAAAACCAGCACAAAAGAAAGAACAAAATCTAGAAAAGTAAAAACAAGATATCTTAAAAGACAGAGGCAAGCACCAATATCGTCATCCTCAAAAAAGACGACAAGACACAAGGAGGTACGGATGAAGAATCGAAAGAACAAAGGAGATTTGATTCGAGAGGTGTTAGGAACAATGATGCTAGTGGCTACGGTGATTGCGACATTGACTTTTGAAGCCGGAGTCAACCCTCCGGGCGGAGTTTGGCAACAAGATACTCAATACATCACCAGCAACTATGTCCATGAGTATTCTGAAAGGGGCTAA

mRNA sequence

ATGGTAGGATATTTACTCTCAATTCTAAAAGTAAAAACCAGCACAAAAGAAAGAACAAAATCTAGAAAAGTAAAAACAAGATATCTTAAAAGACAGAGGCAAGCACCAATATCGTCATCCTCAAAAAAGACGACAAGACACAAGGAGGTACGGATGAAGAATCGAAAGAACAAAGGAGATTTGATTCGAGAGGTGTTAGGAACAATGATGCTAGTGGCTACGGTGATTGCGACATTGACTTTTGAAGCCGGAGTCAACCCTCCGGGCGGAGTTTGGCAACAAGATACTCAATACATCACCAGCAACTATGTCCATGAGTATTCTGAAAGGGGCTAA

Coding sequence (CDS)

ATGGTAGGATATTTACTCTCAATTCTAAAAGTAAAAACCAGCACAAAAGAAAGAACAAAATCTAGAAAAGTAAAAACAAGATATCTTAAAAGACAGAGGCAAGCACCAATATCGTCATCCTCAAAAAAGACGACAAGACACAAGGAGGTACGGATGAAGAATCGAAAGAACAAAGGAGATTTGATTCGAGAGGTGTTAGGAACAATGATGCTAGTGGCTACGGTGATTGCGACATTGACTTTTGAAGCCGGAGTCAACCCTCCGGGCGGAGTTTGGCAACAAGATACTCAATACATCACCAGCAACTATGTCCATGAGTATTCTGAAAGGGGCTAA

Protein sequence

MVGYLLSILKVKTSTKERTKSRKVKTRYLKRQRQAPISSSSKKTTRHKEVRMKNRKNKGDLIREVLGTMMLVATVIATLTFEAGVNPPGGVWQQDTQYITSNYVHEYSERG
Homology
BLAST of Sed0026942 vs. NCBI nr
Match: XP_023526885.1 (ankyrin repeat-containing protein NPR4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 96.3 bits (238), Expect = 1.8e-16
Identity = 60/109 (55.05%), Postives = 77/109 (70.64%), Query Frame = 0

Query: 1   MVGYLLSILKVKT--STKERTKSRKVKTRYLKRQRQAPISSSSKKTTRHKEVRMKNRKNK 60
           MVGYLLS+ +VKT  ST    + R +++R  K+QR+     +S +  R K  R K  K K
Sbjct: 230 MVGYLLSLSEVKTRISTASNVRKRSLESRNSKKQRR---ECASFRIGRWKAWR-KKLKYK 289

Query: 61  GDLIREVLGTMMLVATVIATLTFEAGVNPPGGVWQQDTQYITSNYVHEY 108
           GD + EV GTMMLVATVIAT+TF+AGVNP GGVWQQDT+Y ++NY+ EY
Sbjct: 290 GDWVEEVQGTMMLVATVIATVTFQAGVNPAGGVWQQDTEYNSNNYIDEY 334

BLAST of Sed0026942 vs. NCBI nr
Match: XP_022955457.1 (uncharacterized protein LOC111457477 isoform X2 [Cucurbita moschata])

HSP 1 Score: 93.2 bits (230), Expect = 1.5e-15
Identity = 60/108 (55.56%), Postives = 75/108 (69.44%), Query Frame = 0

Query: 1   MVGYLLSILKVKTS-TKERTKSRKVKTRYLKRQRQAPISSSSKKTTRHKEVRMKNRKNKG 60
           MVGYLLS+ +VKT  +    + R + +R  K+QRQ    S+S +  R K  R K  K KG
Sbjct: 158 MVGYLLSLSEVKTRISTSNVRKRSLASRNSKKQRQ---ESASFRIGRWKTWR-KKLKYKG 217

Query: 61  DLIREVLGTMMLVATVIATLTFEAGVNPPGGVWQQDTQYITSNYVHEY 108
           D ++EV GTMMLVATVIAT+TF+AGVNP GGVWQQDT Y ++NY  EY
Sbjct: 218 DWVQEVEGTMMLVATVIATVTFQAGVNPAGGVWQQDTPYNSNNYEEEY 261

BLAST of Sed0026942 vs. NCBI nr
Match: XP_022955459.1 (ankyrin repeat-containing protein At5g02620-like isoform X4 [Cucurbita moschata])

HSP 1 Score: 93.2 bits (230), Expect = 1.5e-15
Identity = 60/108 (55.56%), Postives = 75/108 (69.44%), Query Frame = 0

Query: 1   MVGYLLSILKVKTS-TKERTKSRKVKTRYLKRQRQAPISSSSKKTTRHKEVRMKNRKNKG 60
           MVGYLLS+ +VKT  +    + R + +R  K+QRQ    S+S +  R K  R K  K KG
Sbjct: 129 MVGYLLSLSEVKTRISTSNVRKRSLASRNSKKQRQ---ESASFRIGRWKTWR-KKLKYKG 188

Query: 61  DLIREVLGTMMLVATVIATLTFEAGVNPPGGVWQQDTQYITSNYVHEY 108
           D ++EV GTMMLVATVIAT+TF+AGVNP GGVWQQDT Y ++NY  EY
Sbjct: 189 DWVQEVEGTMMLVATVIATVTFQAGVNPAGGVWQQDTPYNSNNYEEEY 232

BLAST of Sed0026942 vs. NCBI nr
Match: KAG6581827.1 (Ankyrin repeat-containing protein BDA1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.4 bits (228), Expect = 2.6e-15
Identity = 57/109 (52.29%), Postives = 76/109 (69.72%), Query Frame = 0

Query: 1   MVGYLLSILKVKT--STKERTKSRKVKTRYLKRQRQAPISSSSKKTTRHKEVRMKNRKNK 60
           MVGYLLS+ ++KT  ST    + R +++R  K+QR+     +S +  R K  R K  K K
Sbjct: 155 MVGYLLSLSEIKTRISTASNVRKRSLESRNSKKQRR---ECASSRIGRWKAWR-KKLKCK 214

Query: 61  GDLIREVLGTMMLVATVIATLTFEAGVNPPGGVWQQDTQYITSNYVHEY 108
           GD + E+  TMMLVATVIAT+TF+AGVNP GGVWQQDT+Y ++NY+ EY
Sbjct: 215 GDWVEEMQETMMLVATVIATVTFQAGVNPAGGVWQQDTEYNSNNYIDEY 259

BLAST of Sed0026942 vs. NCBI nr
Match: XP_022955455.1 (uncharacterized protein LOC111457477 isoform X1 [Cucurbita moschata])

HSP 1 Score: 90.9 bits (224), Expect = 7.5e-15
Identity = 59/113 (52.21%), Postives = 74/113 (65.49%), Query Frame = 0

Query: 1   MVGYLLSILKVKTS------TKERTKSRKVKTRYLKRQRQAPISSSSKKTTRHKEVRMKN 60
           M+GYLLS+ +VKT            + R + +R  K+QRQ    S+S +  R K  R K 
Sbjct: 158 MIGYLLSLSEVKTKISTTNIVASNVRKRSLASRNSKKQRQ---ESASFRIGRWKTWR-KK 217

Query: 61  RKNKGDLIREVLGTMMLVATVIATLTFEAGVNPPGGVWQQDTQYITSNYVHEY 108
            K KGD ++EV GTMMLVATVIAT+TF+AGVNP GGVWQQDT Y ++NY  EY
Sbjct: 218 LKYKGDWVQEVEGTMMLVATVIATVTFQAGVNPAGGVWQQDTPYNSNNYEEEY 266

BLAST of Sed0026942 vs. ExPASy TrEMBL
Match: A0A6J1GWC0 (ankyrin repeat-containing protein At5g02620-like isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111457477 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 7.3e-16
Identity = 60/108 (55.56%), Postives = 75/108 (69.44%), Query Frame = 0

Query: 1   MVGYLLSILKVKTS-TKERTKSRKVKTRYLKRQRQAPISSSSKKTTRHKEVRMKNRKNKG 60
           MVGYLLS+ +VKT  +    + R + +R  K+QRQ    S+S +  R K  R K  K KG
Sbjct: 129 MVGYLLSLSEVKTRISTSNVRKRSLASRNSKKQRQ---ESASFRIGRWKTWR-KKLKYKG 188

Query: 61  DLIREVLGTMMLVATVIATLTFEAGVNPPGGVWQQDTQYITSNYVHEY 108
           D ++EV GTMMLVATVIAT+TF+AGVNP GGVWQQDT Y ++NY  EY
Sbjct: 189 DWVQEVEGTMMLVATVIATVTFQAGVNPAGGVWQQDTPYNSNNYEEEY 232

BLAST of Sed0026942 vs. ExPASy TrEMBL
Match: A0A6J1GTP7 (uncharacterized protein LOC111457477 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457477 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 7.3e-16
Identity = 60/108 (55.56%), Postives = 75/108 (69.44%), Query Frame = 0

Query: 1   MVGYLLSILKVKTS-TKERTKSRKVKTRYLKRQRQAPISSSSKKTTRHKEVRMKNRKNKG 60
           MVGYLLS+ +VKT  +    + R + +R  K+QRQ    S+S +  R K  R K  K KG
Sbjct: 158 MVGYLLSLSEVKTRISTSNVRKRSLASRNSKKQRQ---ESASFRIGRWKTWR-KKLKYKG 217

Query: 61  DLIREVLGTMMLVATVIATLTFEAGVNPPGGVWQQDTQYITSNYVHEY 108
           D ++EV GTMMLVATVIAT+TF+AGVNP GGVWQQDT Y ++NY  EY
Sbjct: 218 DWVQEVEGTMMLVATVIATVTFQAGVNPAGGVWQQDTPYNSNNYEEEY 261

BLAST of Sed0026942 vs. ExPASy TrEMBL
Match: A0A6J1GV64 (uncharacterized protein LOC111457477 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457477 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.6e-15
Identity = 59/113 (52.21%), Postives = 74/113 (65.49%), Query Frame = 0

Query: 1   MVGYLLSILKVKTS------TKERTKSRKVKTRYLKRQRQAPISSSSKKTTRHKEVRMKN 60
           M+GYLLS+ +VKT            + R + +R  K+QRQ    S+S +  R K  R K 
Sbjct: 158 MIGYLLSLSEVKTKISTTNIVASNVRKRSLASRNSKKQRQ---ESASFRIGRWKTWR-KK 217

Query: 61  RKNKGDLIREVLGTMMLVATVIATLTFEAGVNPPGGVWQQDTQYITSNYVHEY 108
            K KGD ++EV GTMMLVATVIAT+TF+AGVNP GGVWQQDT Y ++NY  EY
Sbjct: 218 LKYKGDWVQEVEGTMMLVATVIATVTFQAGVNPAGGVWQQDTPYNSNNYEEEY 266

BLAST of Sed0026942 vs. ExPASy TrEMBL
Match: A0A6J1IZU6 (ankyrin repeat-containing protein NPR4-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111479945 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 4.7e-15
Identity = 57/108 (52.78%), Postives = 74/108 (68.52%), Query Frame = 0

Query: 1   MVGYLLSILKVKTS-TKERTKSRKVKTRYLKRQRQAPISSSSKKTTRHKEVRMKNRKNKG 60
           MVGYLLS+ +VKT       + R + ++   +QR+    S+S +  R K  R K  K KG
Sbjct: 158 MVGYLLSLSEVKTRINTPNVRKRSLASQNSTKQRR---ESASFRVGRWKTWR-KKLKYKG 217

Query: 61  DLIREVLGTMMLVATVIATLTFEAGVNPPGGVWQQDTQYITSNYVHEY 108
           D ++EV G MMLVATVIAT+TF+AGVNP GGVWQQDT Y ++NY+HEY
Sbjct: 218 DWVQEVQGIMMLVATVIATVTFQAGVNPAGGVWQQDTPYNSNNYIHEY 261

BLAST of Sed0026942 vs. ExPASy TrEMBL
Match: A0A6J1IX06 (ankyrin repeat-containing protein NPR4-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111479945 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 4.7e-15
Identity = 57/108 (52.78%), Postives = 74/108 (68.52%), Query Frame = 0

Query: 1   MVGYLLSILKVKTS-TKERTKSRKVKTRYLKRQRQAPISSSSKKTTRHKEVRMKNRKNKG 60
           MVGYLLS+ +VKT       + R + ++   +QR+    S+S +  R K  R K  K KG
Sbjct: 158 MVGYLLSLSEVKTRINTPNVRKRSLASQNSTKQRR---ESASFRVGRWKTWR-KKLKYKG 217

Query: 61  DLIREVLGTMMLVATVIATLTFEAGVNPPGGVWQQDTQYITSNYVHEY 108
           D ++EV G MMLVATVIAT+TF+AGVNP GGVWQQDT Y ++NY+HEY
Sbjct: 218 DWVQEVQGIMMLVATVIATVTFQAGVNPAGGVWQQDTPYNSNNYIHEY 261

BLAST of Sed0026942 vs. TAIR 10
Match: AT3G13950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13266.1); Has 339 Blast hits to 265 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 339; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.4 bits (119), Expect = 1.0e-06
Identity = 22/44 (50.00%), Postives = 31/44 (70.45%), Query Frame = 0

Query: 52 MKNRKNKGDLIREVLGTMMLVATVIATLTFEAGVNPPGGVWQQD 96
          +K  K +GD + +  G +M+ ATVIA ++F+  VNPPGGVWQ D
Sbjct: 20 VKYLKRQGDWLEKTRGNLMVTATVIAGMSFQVMVNPPGGVWQSD 63

BLAST of Sed0026942 vs. TAIR 10
Match: AT5G50140.1 (Ankyrin repeat family protein )

HSP 1 Score: 41.6 bits (96), Expect = 4.9e-04
Identity = 21/59 (35.59%), Postives = 39/59 (66.10%), Query Frame = 0

Query: 37  ISSSSKKTTRH--KEVRMKNRKNKGDLIREVLGTMMLVATVIATLTFEAGVNPPGGVWQ 94
           + S++    RH  +E R+K ++ + + ++    T+ +VA +IA++TF  G+NPPGGV+Q
Sbjct: 333 VISNTLHGIRHGLRESRIKEKEMQSEALQNARNTITVVAVLIASVTFTCGLNPPGGVYQ 391

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023526885.11.8e-1655.05ankyrin repeat-containing protein NPR4-like [Cucurbita pepo subsp. pepo][more]
XP_022955457.11.5e-1555.56uncharacterized protein LOC111457477 isoform X2 [Cucurbita moschata][more]
XP_022955459.11.5e-1555.56ankyrin repeat-containing protein At5g02620-like isoform X4 [Cucurbita moschata][more]
KAG6581827.12.6e-1552.29Ankyrin repeat-containing protein BDA1, partial [Cucurbita argyrosperma subsp. s... [more]
XP_022955455.17.5e-1552.21uncharacterized protein LOC111457477 isoform X1 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1GWC07.3e-1655.56ankyrin repeat-containing protein At5g02620-like isoform X4 OS=Cucurbita moschat... [more]
A0A6J1GTP77.3e-1655.56uncharacterized protein LOC111457477 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1GV643.6e-1552.21uncharacterized protein LOC111457477 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1IZU64.7e-1552.78ankyrin repeat-containing protein NPR4-like isoform X1 OS=Cucurbita maxima OX=36... [more]
A0A6J1IX064.7e-1552.78ankyrin repeat-containing protein NPR4-like isoform X2 OS=Cucurbita maxima OX=36... [more]
Match NameE-valueIdentityDescription
AT3G13950.11.0e-0650.00unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G50140.14.9e-0435.59Ankyrin repeat family protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026961PGG domainPFAMPF13962PGGcoord: 64..97
e-value: 1.5E-10
score: 40.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..30
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..56

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0026942.1Sed0026942.1mRNA