Sed0026884 (gene) Chayote v1

Overview


Name	Sed0026884
Type	gene
Organism	Sechium edule (Chayote v1)
Description	U2 small nuclear ribonucleoprotein A'
Location	LG09: 3225369 .. 3231375 (-)
RNA-Seq Expression	Sed0026884
Synteny	Sed0026884

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCGTTTTGAACCTTCTTTCGAACGACGCAGCGCTGTTTTGCCGTCGTTGTCGTCGACGCCTTCCATTCGCCCTAAAACCCTAAACCGTCGCCTCCGCCTCCGCCGCCGTCGTCGCCGCCGTAGTGGTTGCCGGCGAATCAAAGTCAGAAGAACATGGTGAGGCTCACAGTCGATTTAGTCTGGAAATGTCCTCATTTCTTCAATGCCATTAAGGAGCGAGAACTGGATCTTCGAGGTTTATCTATCTCTTATCTCTTGTCTTTATTCGTTCACTCTCTAGGGCTTGCATTTCTTGATTCGTTTCTTCTCGTTTCCAGGTAACAAAATTGCAGTCATCGAAAACCTAGGTGCCACCGAGGTGAGTGATTTTCGCTGATTTATATCTCTTTTTTTTTTTTGAAATCTCCGCATCACGAACGGATTCCGGTGTCTTTTACTCGGCTCCGATGTATACCTAAGCTCCTCATACTATTTATCCTCTTGTGTTAGTTTTGTTTAAGTCTGGAATTTGAATCTAATTCTTACTCGCCGTTGTATCGTGTTGATAGTTTTAGTCTGTAATCTATTGGTGAAATTCTTTTACCAAATTCAAATTCACTTTAGATGAGTAATGTACTGATGTCCCCGAGGGGTGGTGCTGTGGTCATTGGGTTTTGAGAGGTGTGCTACCCTCGAATTGTTGGGTTCTAGACTCACTTGTGACGTTAATTTGTTGACACCTATCGTGTCTCCCTTCCTTCGATGTCTCCTGGTGCCTAGCCTAGTGTATAGTGGAGCGAAACTATGATTTCCCAGTTTCAAAAAAAGAAGAAGTAATGTATGATATTTTCTTCCTAGTTTTATTTTTTATCTGGACACTGTCAACCATCTCATGCTATATATCCCATAATAATTAGACGGCTACCATAGATTGAACTCATTACCTCGCATTTCTCCGAAGTTTTTTGCTACAATCTCTTGTTGTACCATTTTGAAGGTTTAATGTAGCTTCATTTTCTAACACCCAATGAAAATGTTTTTGTTTCCTATCCCAAAAGAAAAGGGCCCAATGTAGCTTCATTTTCCTTGAAGACAGCTTAAAGGATCTAGTTTTGTGGGTGTGTGCTGTACATTTTGCCAAGAGTCATTCAAATATTTTAGTTTATCAAATTGAGGAACCAATTATTCCTTTTTAACCTCAAGGATCAGATTTTGACCTAACAAGATTTTTCTGGAGAACTATGATTTTTTTTAACCACCGACCCGAGACTATTTTTGAAAACTAATATTCCGTTTCTATTTGAAGGCAGAGAACCAAGTTCAATGTGAATGAAGAGCCGGTTTATAGTTTTCACATCCTTTCTACATAAATATAGATCTGAGATTTGAGGGTATTTAGAAAGCGGTGGGCTTCTTTGCATTCTATCTTGTGTAGTAAGACTTCTGTAGGCCTTGACATATTGGTGCAGCATACAATATTAGTTTCTTAAGAATTAGAGTGCCCTAAACAAACAAAAATACCCTTCATCTCTTATTAAAATGGACAGAATACATCAGAAGGTGGTCACCCATACTGAGCTAAAACTTCGTCAATATTTTTGACTTTTTGTTTGAACTCAACAACAAAAAAATTACATACATATTCATCTGACATTTTCTGGCAATGTCTACACCGCGGTTATTGATCTAGTCCATGGGCATTTTAATTAGGGTTAATTTGATGGTTTATCTTCTTTCATTCCCAGTGTAATCGACACACAAGCATCAACCAAAAATTTGTATCATTATCTCATTTGAGATCCTTACCCTTTAAAAGTGGTTATTGAGGCTTGTTTATCGTATTTTTGGTATGTTTTTAATTGCCCTTTGTATTGGCTTGTATTTATTGGCATCTCCATTTCTCTTTTTTCCTTATTTCTAGCACTTGTTTTGTTAGGTCGTTATATTACTTTCACAAATCAATGAAATAATATTCGTTTCTTATATATATATATATATATATATAAAGAATTAAATATCTGAAGGTGGGAAATTTGAATTCATAACCTTTTGGTTATAAGGTCATACATCATGCCACTGACATTATGCTCTTATATTAATATTTATAACTTGAAAGTGCTTTCTCATGTAAATGCTATGTTGCCTGCCCCTTTATGGAAGATAAGAATGTTCGCAATTTATCTAGCTTAGCTTACTTGCCTCAATTTTTTTTAACCATATTATGGTATATTCCCTTGACCATAAATTTCAGGACCAATTTGATGCCATTGATTTGTCTGATAACGAGATTGTGAAGCTTGAAAATATGCCATATCTTAATCGATTGGGCACATTGCTGATCAATAATAATAGAATCACTCGTATCAATCCAAATATCGGAGGTGAGCTTTGTAATGCTTTTATAGGATCATTTGCGATCATGTTTCTGGAAACTGTTTTTGTTAAAGTGATTTCTTTGTTCTTATCAGAGTTCTTGCCAAAATTACATACATTAGTTCTTACAAACAACAGACTCGTGAACTTGGTAGAGATTGACCCCTTGGCATCCCTTCCAAAACTTCAGTTTCTTAGTTTGTTGGATAACAATATTACAAAAAAGCCAAACTATAGATTGTATGTCATTCACAAGTTGAAGTCACTCCGGGTGCTTGATTTCAAGAAAGTCAGAAACAAGGTAACTTATTCTGTATCCAGACCTTATTATTTAAATAATGGCTATTATTTTAGAGTTTTTACTGCCTTTTATTTTTTACAATGGCCATAAACATATAGAAGGCCCTTCTTCTAGGGTGTTCCCATTTGTGGGCTTGGGTTTTTTTTTTGTATGCTTTGTGTTCTTCATTTCTTAATGAAAGTTCGTTTTTTATCCAAAAAAAAGGAACGTTTAGAAGAGAATTTCAAGTTTATTGCAACTTGAGTCAATGATATATTTTGATAAATGTCACAACTTTTAGCTTTTTTATGGATTTAGTATTATACATTACTTTGAGTTTTCTTATTGTATTTAATATTATATTCTAATCTAAGTTGGGTTTTGATTGTGTTTTATGTGTGAAATTTTAAACTTCTTGCGATTCAGCTCTTTTTTATGCTATTTATTCAACTTGAGTCAATGATATATTTTGAATCTGTTTTGCGCACATAATGAATGTGCATAAAAACTCGTAACTCAATACCTAAACTCTAAAGGTCCCAAAGAGTGGCACAATGGTTGAAAACTTGGGCTTGAAGGTATGCTCTCCTCAAAGTCCTAGGTTTGAGACTCACTTGTGACAACATACCTTCCATGTCTTCCGGTGTCTGGCCTAGGGATGAGCATGGGTACCTTGTTTAAAAAAAAAACCTAAACTCTAAAGAATTCACATGCTGAAAGTTCTATTGTCCAGCAATTTATTTATAAATAATCTTGTGCCTGAGAATAATTCTTTGGCTAAAAAGAAAATAGGATTATAGTGGCCATAAATACTTAAATAGAGCCGAGTTTATGCTATTCTAGTACAATATCCGTGTGTGTCCAGGATGTGCACACTTAAGCTATGCTCTTGTTGGCAAGGTGCAAGTCCTTTGTGGTAGACTTTTGTATCTCTATTGTTTGGAGATCTATTTTTGTGGGATAGTGGATGAAGTTGTCTTGGTTTTGTTGTTTTGAGACCAACGTTGCATGTTGACTATTGTTTCAAGCTAAGTTTTTTAATGAGCCAGCGTTTTTTTTACGATACGGTTATCCCATGCCTCTGCATCTCTTCATTTCTTAATGTCAATGACAGGAGAGATTAGAGGCTAAGAATTTATTTTCATCAAAAGAAGTTGAAGAAGAGGCGAAAAAGGAATCTGTGAAGACATTCGTTCCAGGCGAGGTAGAGAATGCATCCAAACCTGTGGAGGAGAAACAAACTCCAAATGTGTCTGCACCAACACCGGAACAAATTATAGCTATTAAGGTGTGTACATTTTAACTATACGCCTCAATCACATGATGGGCAAGAAGCTTAAGAATCTCTTTGATCTGAATATGCTTTTCTTGTCTAGATATGGGTCAAGTTCTAATAGAATGTGAGTAAGAACTAAAAGTCTTATCGAAACTTTTTAAAACAAGTTGCCTAGGGACGGGCATGGTCCCCAAGGGTTGGCACGGTGGTCGAAAGCCTAAGTTTTGAAGGTGTGCTCCAAGGTCTCAGGTTCGAGACTCACCTGTGGCATTAATTTGCAGACACCTCCCGTGTCTCCATTCCTTCGATGTCTCCCGGTGCTAGGCCTAGGGACGGGTATGGTTACCCCAGTTATAGTGGAGCAAAATTCCGATTTCTCGGTTCCCAAAAACAAAAACGAACTTTGCCACTAAAAATAAAGTGGAAGTTCATAGTAACAATTTGTAGTAGAAGACAATGGCTCCAGAAGAAAGCAAGATATAATGCAAAATCAAATTATATTATTGTGAGGCTATAAACATTTGGCTTTTGACATGATATCAAATCTGTTATATCAATTCCCTTGATTTGGTCTGCATTAGTGTGTTTTGTTTAAATAGGCCTCAGAGGATTATTTGCTAATTTTGTACTTGGGGGCTTGTAGAAGAGAGCTTATTTGGCCACCATATGTTTTCTATTACATTGTATAATTAATTAACCTTTTATGTTACAGGCGGCCATTGTTAACTCCCAAACTCTTGAAGAGGTTGCAAGATTAGAACAGGTGTGGTTGGTAACTTGGTTTTATTCTCCCCCCACAACCCCAAAAAAAGAATCCATTTAAATGTTTGTATGCGAATTATAACTTTCAAGAATTCTTCATTGTGTTTCCAGGCGCTAAAGTCGGGCCAGCTACCTGCAGATTTGAATCTTTTTGAAGATAATACTGTGTCAAATACCACAAAAGATACAGATGATAAGACAATGTCTGATGTTGGAAACGAAGAAAATGTGTCCAAGGATTCGAAAGAACAGTCGGAGGATGAACCTACGCCTATGGAGCAGGTACGTTTACGTACCACAGCCTTCACACGATTTGAGTGGTGCATTTGTTCTGTTCCTTTTTTCTTTTTAAAGATTACATGTAAACTCAAATTTAAATTATATTGGAAAATCTACTTTTCTGAACAAAAAGAGATTATAGTTTTCAAAATTTGGGAGCCAGAGGCCATCATGATATAAGTAGTATTAAAATAGGTGCGTAAATCGTAATTTACATTTATATACAAAATACAAGGGGAGGCCAACATCATCATAAAAGCACGTAAAACATAATATATAAAAAAATATATGGACCCACTTTTATGTATAAAAAAGAGCTAATCCCAAAATTTTGGGGGGCCAAGGTCTCCTCTAGGTACACCCCTGCACGCCTCTTTTGTGCTATTGTTTTATCTCACATTCTTTTTAAAGTTTGTTTTTTGTGTTTGAATCATGCTCACAAATATATATATATATATATATATTAAAAAGTGTGTTTTAACTATCATGGAGTGGCCGGCCTAATGGTCAAGATGGCCTTAGAGAGTTAAGAGGTGATGGATTTAATCCTTTGGTGGCCACCTACTTAGGAATTAATTTCCTACAGTAGGTTAGATCAGACGGTATGCCTTGTGACATTAGTCGAGGCGTGCACAAGCTAGCTTTGACAGTCACAAATATAAAAAAAAAGTGTTTTTTCTTTGAGGATCTTGAGAATTTCTTTGAAGCTGTCACTCTCTGCACCATTTCCTATCTCGTACCCGCCCTCATCATTTGTTACAAGCAGCTTGACATAAGATGGTTGAAATTGTAGGAATAGTAAAATGATCGTTGCTCGTTGATTTGTGGAGATTTTTGAAAGCTTTTGAGAAGTCGAAGCATGAAGTTCCCAGCCTGCTTTTGGTTGGTTCTCTTTCCTTTTCCTTTTCCTTTTCCATGTAGTTTCGTGTTCTTTCTTTCCCCTTTAATGGGTAAAAAGTTCTTTAGATATATTATGGGATCTTCTATTGACTTATGAAATGGTTTTATGTTGTATTTACGACACTTGTAGTGTAATGCCTTTGAAATTTTCTTCCCT

mRNA sequence

ATCGTTTTGAACCTTCTTTCGAACGACGCAGCGCTGTTTTGCCGTCGTTGTCGTCGACGCCTTCCATTCGCCCTAAAACCCTAAACCGTCGCCTCCGCCTCCGCCGCCGTCGTCGCCGCCGTAGTGGTTGCCGGCGAATCAAAGTCAGAAGAACATGGTGAGGCTCACAGTCGATTTAGTCTGGAAATGTCCTCATTTCTTCAATGCCATTAAGGAGCGAGAACTGGATCTTCGAGGTAACAAAATTGCAGTCATCGAAAACCTAGGTGCCACCGAGGACCAATTTGATGCCATTGATTTGTCTGATAACGAGATTGTGAAGCTTGAAAATATGCCATATCTTAATCGATTGGGCACATTGCTGATCAATAATAATAGAATCACTCGTATCAATCCAAATATCGGAGAGTTCTTGCCAAAATTACATACATTAGTTCTTACAAACAACAGACTCGTGAACTTGGTAGAGATTGACCCCTTGGCATCCCTTCCAAAACTTCAGTTTCTTAGTTTGTTGGATAACAATATTACAAAAAAGCCAAACTATAGATTGTATGTCATTCACAAGTTGAAGTCACTCCGGGTGCTTGATTTCAAGAAAGTCAGAAACAAGGAGAGATTAGAGGCTAAGAATTTATTTTCATCAAAAGAAGTTGAAGAAGAGGCGAAAAAGGAATCTGTGAAGACATTCGTTCCAGGCGAGGTAGAGAATGCATCCAAACCTGTGGAGGAGAAACAAACTCCAAATGTGTCTGCACCAACACCGGAACAAATTATAGCTATTAAGGCGGCCATTGTTAACTCCCAAACTCTTGAAGAGGTTGCAAGATTAGAACAGGCGCTAAAGTCGGGCCAGCTACCTGCAGATTTGAATCTTTTTGAAGATAATACTGTGTCAAATACCACAAAAGATACAGATGATAAGACAATGTCTGATGTTGGAAACGAAGAAAATGTGTCCAAGGATTCGAAAGAACAGTCGGAGGATGAACCTACGCCTATGGAGCAGGAATAGTAAAATGATCGTTGCTCGTTGATTTGTGGAGATTTTTGAAAGCTTTTGAGAAGTCGAAGCATGAAGTTCCCAGCCTGCTTTTGGTTGGTTCTCTTTCCTTTTCCTTTTCCTTTTCCATGTAGTTTCGTGTTCTTTCTTTCCCCTTTAATGGGTAAAAAGTTCTTTAGATATATTATGGGATCTTCTATTGACTTATGAAATGGTTTTATGTTGTATTTACGACACTTGTAGTGTAATGCCTTTGAAATTTTCTTCCCT

Coding sequence (CDS)

ATGGTGAGGCTCACAGTCGATTTAGTCTGGAAATGTCCTCATTTCTTCAATGCCATTAAGGAGCGAGAACTGGATCTTCGAGGTAACAAAATTGCAGTCATCGAAAACCTAGGTGCCACCGAGGACCAATTTGATGCCATTGATTTGTCTGATAACGAGATTGTGAAGCTTGAAAATATGCCATATCTTAATCGATTGGGCACATTGCTGATCAATAATAATAGAATCACTCGTATCAATCCAAATATCGGAGAGTTCTTGCCAAAATTACATACATTAGTTCTTACAAACAACAGACTCGTGAACTTGGTAGAGATTGACCCCTTGGCATCCCTTCCAAAACTTCAGTTTCTTAGTTTGTTGGATAACAATATTACAAAAAAGCCAAACTATAGATTGTATGTCATTCACAAGTTGAAGTCACTCCGGGTGCTTGATTTCAAGAAAGTCAGAAACAAGGAGAGATTAGAGGCTAAGAATTTATTTTCATCAAAAGAAGTTGAAGAAGAGGCGAAAAAGGAATCTGTGAAGACATTCGTTCCAGGCGAGGTAGAGAATGCATCCAAACCTGTGGAGGAGAAACAAACTCCAAATGTGTCTGCACCAACACCGGAACAAATTATAGCTATTAAGGCGGCCATTGTTAACTCCCAAACTCTTGAAGAGGTTGCAAGATTAGAACAGGCGCTAAAGTCGGGCCAGCTACCTGCAGATTTGAATCTTTTTGAAGATAATACTGTGTCAAATACCACAAAAGATACAGATGATAAGACAATGTCTGATGTTGGAAACGAAGAAAATGTGTCCAAGGATTCGAAAGAACAGTCGGAGGATGAACCTACGCCTATGGAGCAGGAATAG

Protein sequence

MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLFEDNTVSNTTKDTDDKTMSDVGNEENVSKDSKEQSEDEPTPMEQE

Homology

[Close]

BLAST of Sed0026884 vs. NCBI nr
Match: XP_022960458.1 (U2 small nuclear ribonucleoprotein A' [Cucurbita moschata] >XP_023514252.1 U2 small nuclear ribonucleoprotein A' [Cucurbita pepo subsp. pepo] >KAG6592834.1 U2 small nuclear ribonucleoprotein A', partial [Cucurbita argyrosperma subsp. sororia] >KAG7025241.1 U2 small nuclear ribonucleoprotein A', partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 507.7 bits (1306), Expect = 6.6e-140
Identity = 272/286 (95.10%), Postives = 279/286 (97.55%), Query Frame = 0


Query: 1   MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDL+WK PHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKL+SLRVLDFKKVRNKERLEA+NLFSSKEVEEEAKKESVKTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180

Query: 181 PGEVENASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           PGEVENASKPVEEKQT  +SAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LFEDNTVSNTTKDTDDKTMSDVGNEENVSKDSKEQSEDEPTPMEQE 287
           L EDNTV+NTTKDTDDKTMSD G+EENVSKD+KEQS DE TPMEQE
Sbjct: 241 LLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQE 286

[Close]

BLAST of Sed0026884 vs. NCBI nr
Match: XP_023005060.1 (U2 small nuclear ribonucleoprotein A' [Cucurbita maxima])

HSP 1 Score: 506.1 bits (1302), Expect = 1.9e-139
Identity = 271/286 (94.76%), Postives = 279/286 (97.55%), Query Frame = 0


Query: 1   MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDL+WK PHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKL+SLRVLDFKKVRNKERLEA+NLFSSKEVEEEAKKESVKTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180

Query: 181 PGEVENASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           PGEVENASKPVEEKQT  +SAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LFEDNTVSNTTKDTDDKTMSDVGNEENVSKDSKEQSEDEPTPMEQE 287
           L EDNTV+NTTKDTDDKT+SD G+EENVSKD+KEQS DE TPMEQE
Sbjct: 241 LLEDNTVTNTTKDTDDKTVSDGGDEENVSKDAKEQSNDESTPMEQE 286

[Close]

BLAST of Sed0026884 vs. NCBI nr
Match: XP_038907085.1 (U2 small nuclear ribonucleoprotein A' [Benincasa hispida])

HSP 1 Score: 504.2 bits (1297), Expect = 7.3e-139
Identity = 271/286 (94.76%), Postives = 277/286 (96.85%), Query Frame = 0


Query: 1   MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDL+WK PHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKLKS+RVLDFKKVRNKERLEA+NLFSSKEVEEEAKKESVK FV
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKMFV 180

Query: 181 PGEVENASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           PGEVENASKPVEEKQT NVSAPT EQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 PGEVENASKPVEEKQTSNVSAPTAEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LFEDNTVSNTTKDTDDKTMSDVGNEENVSKDSKEQSEDEPTPMEQE 287
           L +DNTV NTTK+TDDKTMSD G+EENVSKD KEQS DEPTPMEQE
Sbjct: 241 LLDDNTVPNTTKNTDDKTMSDSGDEENVSKDVKEQSNDEPTPMEQE 286

[Close]

BLAST of Sed0026884 vs. NCBI nr
Match: XP_022148876.1 (U2 small nuclear ribonucleoprotein A' [Momordica charantia])

HSP 1 Score: 496.5 bits (1277), Expect = 1.5e-136
Identity = 267/285 (93.68%), Postives = 273/285 (95.79%), Query Frame = 0


Query: 1   MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDL+WK PHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEA++LFSSKEVEEEAK ESVKTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKNESVKTFV 180

Query: 181 PGEVENASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           PGEVENASKP EEKQT NVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 PGEVENASKPAEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LFEDNTVSNTTKDTDDKTMSDVGNEENVSKDSKEQSEDEPTPMEQ 286
           L EDNTVSNTTKDTDD+TMSD  +E+NVSKD KEQ  DE  PMEQ
Sbjct: 241 LLEDNTVSNTTKDTDDETMSDGRDEDNVSKDVKEQPNDESAPMEQ 285

[Close]

BLAST of Sed0026884 vs. NCBI nr
Match: XP_004140564.3 (U2 small nuclear ribonucleoprotein A' [Cucumis sativus] >KAE8646748.1 hypothetical protein Csa_005755 [Cucumis sativus])

HSP 1 Score: 481.9 bits (1239), Expect = 3.9e-132
Identity = 261/286 (91.26%), Postives = 267/286 (93.36%), Query Frame = 0


Query: 1   MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDL+WK PHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRLVNLVEIDPLASL KLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKLKS+RVLDFKKVRNKERLEA+NLFSSKEVEEEAKKESVKTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180

Query: 181 PGEVENASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           PGEVE ASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 PGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LFEDNTVSNTTKDTDDKTMSDVGNEENVSKDSKEQSEDEPTPMEQE 287
           L EDNT  N TKD DDKTMSD G+EE+V       + DE TPMEQE
Sbjct: 241 LLEDNTAQNITKDKDDKTMSDSGDEEHV-------TNDESTPMEQE 279

[Close]

BLAST of Sed0026884 vs. ExPASy Swiss-Prot
Match: P43333 (U2 small nuclear ribonucleoprotein A' OS=Arabidopsis thaliana OX=3702 GN=At1g09760 PE=2 SV=2)

HSP 1 Score: 359.8 bits (922), Expect = 2.9e-98
Identity = 191/239 (79.92%), Postives = 209/239 (87.45%), Query Frame = 0


Query: 1   MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MV+LT DL+WK PHFFNAIKERELDLRGNKI VIENLGATEDQFD IDLSDNEIVKLEN 
Sbjct: 1   MVKLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPN+GEFLPKLH+LVLTNNRLVNLVEIDPLAS+PKLQ+LSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNLGEFLPKLHSLVLTNNRLVNLVEIDPLASIPKLQYLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKK NYRLYVIHKLKSLRVLDF K++ KER EA +LFSSKE EEE KK S +   
Sbjct: 121 LDNNITKKANYRLYVIHKLKSLRVLDFIKIKAKERAEAASLFSSKEAEEEVKKVSRE--- 180

Query: 181 PGEVENASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL 240
             EV+  S+  E  +TP V APT EQI+AIKAAI+NSQT+EE+ARLEQALK GQ+PA L
Sbjct: 181 --EVKKVSETAENPETPKVVAPTAEQILAIKAAIINSQTIEEIARLEQALKFGQVPAGL 234

[Close]

BLAST of Sed0026884 vs. ExPASy Swiss-Prot
Match: P09661 (U2 small nuclear ribonucleoprotein A' OS=Homo sapiens OX=9606 GN=SNRPA1 PE=1 SV=2)

HSP 1 Score: 213.8 bits (543), Expect = 2.6e-54
Identity = 126/238 (52.94%), Postives = 162/238 (68.07%), Query Frame = 0


Query: 1   MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MV+LT +L+ +   + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           P L RL TLL+NNNRI RI   + + LP L  L+LTNN LV L ++DPLASL  L +LS+
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAK--KESVKT 180
           L N +T K +YRLYVI+K+  +RVLDF+KV+ KER EA+ +F  K   + AK      KT
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKT 180

Query: 181 FVPGEVENASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP 237
           F PG    A  P ++K+      P+P  + AIK AI N+ TL EV RL+  L+SGQ+P
Sbjct: 181 FNPG----AGLPTDKKK----GGPSPGDVEAIKNAIANASTLAEVERLKGLLQSGQIP 230

[Close]

BLAST of Sed0026884 vs. ExPASy Swiss-Prot
Match: Q4R8Y8 (U2 small nuclear ribonucleoprotein A' OS=Macaca fascicularis OX=9541 GN=SNRPA1 PE=2 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 2.6e-54
Identity = 126/238 (52.94%), Postives = 162/238 (68.07%), Query Frame = 0


Query: 1   MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MV+LT +L+ +   + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           P L RL TLL+NNNRI RI   + + LP L  L+LTNN LV L ++DPLASL  L +LS+
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAK--KESVKT 180
           L N +T K +YRLYVI+K+  +RVLDF+KV+ KER EA+ +F  K   + AK      KT
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKT 180

Query: 181 FVPGEVENASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP 237
           F PG    A  P ++K+      P+P  + AIK AI N+ TL EV RL+  L+SGQ+P
Sbjct: 181 FNPG----AGLPTDKKK----GGPSPGDVEAIKNAIANASTLAEVERLKGLLQSGQIP 230

[Close]

BLAST of Sed0026884 vs. ExPASy Swiss-Prot
Match: P57784 (U2 small nuclear ribonucleoprotein A' OS=Mus musculus OX=10090 GN=Snrpa1 PE=1 SV=2)

HSP 1 Score: 210.7 bits (535), Expect = 2.2e-53
Identity = 125/238 (52.52%), Postives = 161/238 (67.65%), Query Frame = 0


Query: 1   MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MV+LT +L+ +   + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           P L RL TLL+NNNRI RI   + + LP L  L+LTNN LV L ++DPLASL  L +LS+
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAK--KESVKT 180
           L N +T K +YRLYVI+K+  +RVLDF+KV+ KER EA+ +F  K   + AK      KT
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKT 180

Query: 181 FVPGEVENASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP 237
           F PG    A  P ++K+      P+   + AIK AI N+ TL EV RL+  L+SGQ+P
Sbjct: 181 FNPG----AGLPTDKKK----GGPSAGDVEAIKNAIANASTLAEVERLKGLLQSGQIP 230

[Close]

BLAST of Sed0026884 vs. ExPASy Swiss-Prot
Match: Q9BLB6 (Probable U2 small nuclear ribonucleoprotein A' OS=Caenorhabditis elegans OX=6239 GN=mog-2 PE=1 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 2.2e-45
Identity = 109/238 (45.80%), Postives = 153/238 (64.29%), Query Frame = 0


Query: 1   MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLT +L  + P F N++  RE++LRG KI VIEN+G T DQFD IDL+DN+I KL+N 
Sbjct: 1   MVRLTTELFAERPQFVNSVNMREINLRGQKIPVIENMGVTRDQFDVIDLTDNDIRKLDNF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           P  +RL TL ++NNRI  I P+I   LP L TL LTNN +  L +I+PLA   KL++++ 
Sbjct: 61  PTFSRLNTLYLHNNRINYIAPDIATKLPNLKTLALTNNNICELGDIEPLAECKKLEYVTF 120

Query: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEE--EAKKESVKT 180
           + N IT K NYR+Y+I+KL ++RV+DF +VR  ER  AK +F  K  ++  +A ++SV T
Sbjct: 121 IGNPITHKDNYRMYMIYKLPTVRVIDFNRVRLTEREAAKKMFKGKSGKKARDAIQKSVHT 180

Query: 181 FVPGEVENASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP 237
             P E+E       E  +   +  T E    IK AI N+++L EV  L+  L SG++P
Sbjct: 181 EDPSEIE-----PNENSSGGGARLTDEDREKIKEAIKNAKSLSEVNYLQSILASGKVP 233

[Close]

BLAST of Sed0026884 vs. ExPASy TrEMBL
Match: A0A6J1H905 (U2 small nuclear ribonucleoprotein A' OS=Cucurbita moschata OX=3662 GN=LOC111461186 PE=3 SV=1)

HSP 1 Score: 507.7 bits (1306), Expect = 3.2e-140
Identity = 272/286 (95.10%), Postives = 279/286 (97.55%), Query Frame = 0


Query: 1   MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDL+WK PHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKL+SLRVLDFKKVRNKERLEA+NLFSSKEVEEEAKKESVKTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180

Query: 181 PGEVENASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           PGEVENASKPVEEKQT  +SAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LFEDNTVSNTTKDTDDKTMSDVGNEENVSKDSKEQSEDEPTPMEQE 287
           L EDNTV+NTTKDTDDKTMSD G+EENVSKD+KEQS DE TPMEQE
Sbjct: 241 LLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQE 286

[Close]

BLAST of Sed0026884 vs. ExPASy TrEMBL
Match: A0A6J1KWC8 (U2 small nuclear ribonucleoprotein A' OS=Cucurbita maxima OX=3661 GN=LOC111498166 PE=3 SV=1)

HSP 1 Score: 506.1 bits (1302), Expect = 9.3e-140
Identity = 271/286 (94.76%), Postives = 279/286 (97.55%), Query Frame = 0


Query: 1   MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDL+WK PHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKL+SLRVLDFKKVRNKERLEA+NLFSSKEVEEEAKKESVKTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180

Query: 181 PGEVENASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           PGEVENASKPVEEKQT  +SAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LFEDNTVSNTTKDTDDKTMSDVGNEENVSKDSKEQSEDEPTPMEQE 287
           L EDNTV+NTTKDTDDKT+SD G+EENVSKD+KEQS DE TPMEQE
Sbjct: 241 LLEDNTVTNTTKDTDDKTVSDGGDEENVSKDAKEQSNDESTPMEQE 286

[Close]

BLAST of Sed0026884 vs. ExPASy TrEMBL
Match: A0A6J1D6P1 (U2 small nuclear ribonucleoprotein A' OS=Momordica charantia OX=3673 GN=LOC111017441 PE=3 SV=1)

HSP 1 Score: 496.5 bits (1277), Expect = 7.4e-137
Identity = 267/285 (93.68%), Postives = 273/285 (95.79%), Query Frame = 0


Query: 1   MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDL+WK PHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEA++LFSSKEVEEEAK ESVKTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKNESVKTFV 180

Query: 181 PGEVENASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           PGEVENASKP EEKQT NVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 PGEVENASKPAEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LFEDNTVSNTTKDTDDKTMSDVGNEENVSKDSKEQSEDEPTPMEQ 286
           L EDNTVSNTTKDTDD+TMSD  +E+NVSKD KEQ  DE  PMEQ
Sbjct: 241 LLEDNTVSNTTKDTDDETMSDGRDEDNVSKDVKEQPNDESAPMEQ 285

[Close]

BLAST of Sed0026884 vs. ExPASy TrEMBL
Match: E5GB46 (U2 small nuclear ribonucleoprotein a OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 473.4 bits (1217), Expect = 6.7e-130
Identity = 258/286 (90.21%), Postives = 264/286 (92.31%), Query Frame = 0


Query: 1   MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDL+WK PHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRLVNLVEIDPLASL KLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKLKS+RVLDFKKVRNKERLEA+NLFSSKEVEEEAKKESVKTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180

Query: 181 PGEVENASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
            GEVE ASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LFEDNTVSNTTKDTDDKTMSDVGNEENVSKDSKEQSEDEPTPMEQE 287
           L EDNT  N TKD DDKT S  G+EE+V       + DE TPMEQE
Sbjct: 241 LLEDNTAPNITKDKDDKTTSGSGDEEHV-------TNDESTPMEQE 279

[Close]

BLAST of Sed0026884 vs. ExPASy TrEMBL
Match: A0A1S3CAU7 (U2 small nuclear ribonucleoprotein A' OS=Cucumis melo OX=3656 GN=LOC103498903 PE=3 SV=1)

HSP 1 Score: 473.4 bits (1217), Expect = 6.7e-130
Identity = 258/286 (90.21%), Postives = 264/286 (92.31%), Query Frame = 0


Query: 1   MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDL+WK PHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRLVNLVEIDPLASL KLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKLKS+RVLDFKKVRNKERLEA+NLFSSKEVEEEAKKESVKTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180

Query: 181 PGEVENASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
            GEVE ASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LFEDNTVSNTTKDTDDKTMSDVGNEENVSKDSKEQSEDEPTPMEQE 287
           L EDNT  N TKD DDKT S  G+EE+V       + DE TPMEQE
Sbjct: 241 LLEDNTAPNITKDKDDKTTSGSGDEEHV-------TNDESTPMEQE 279

[Close]

BLAST of Sed0026884 vs. TAIR 10
Match: AT1G09760.1 (U2 small nuclear ribonucleoprotein A )

HSP 1 Score: 359.8 bits (922), Expect = 2.1e-99
Identity = 191/239 (79.92%), Postives = 209/239 (87.45%), Query Frame = 0


Query: 1   MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MV+LT DL+WK PHFFNAIKERELDLRGNKI VIENLGATEDQFD IDLSDNEIVKLEN 
Sbjct: 1   MVKLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPN+GEFLPKLH+LVLTNNRLVNLVEIDPLAS+PKLQ+LSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNLGEFLPKLHSLVLTNNRLVNLVEIDPLASIPKLQYLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKK NYRLYVIHKLKSLRVLDF K++ KER EA +LFSSKE EEE KK S +   
Sbjct: 121 LDNNITKKANYRLYVIHKLKSLRVLDFIKIKAKERAEAASLFSSKEAEEEVKKVSRE--- 180

Query: 181 PGEVENASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL 240
             EV+  S+  E  +TP V APT EQI+AIKAAI+NSQT+EE+ARLEQALK GQ+PA L
Sbjct: 181 --EVKKVSETAENPETPKVVAPTAEQILAIKAAIINSQTIEEIARLEQALKFGQVPAGL 234

[Close]

BLAST of Sed0026884 vs. TAIR 10
Match: AT1G04210.1 (Leucine-rich repeat protein kinase family protein )

HSP 1 Score: 42.4 bits (98), Expect = 7.3e-04
Identity = 33/86 (38.37%), Postives = 51/86 (59.30%), Query Frame = 0


Query: 47  IDLSDNEIVKLEN-MPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVE 106
           +DLS N+I  L N + YL+ L  L + +NR+  ++P +   L  L +L ++NNRL  L  
Sbjct: 181 LDLSFNKIKSLPNEIGYLSSLTFLKVAHNRLMELSPVLA-LLQNLESLDVSNNRLTTLHP 240

Query: 107 IDPLASLPKLQFLSLLDNNITKKPNY 132
           +D L  +P+LQ L+L  N   K P+Y
Sbjct: 241 LD-LNLMPRLQILNLRYN---KLPSY 261

The following BLAST results are available for this feature:

BLAST of Sed0026884 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022960458.1	6.6e-140	95.10	U2 small nuclear ribonucleoprotein A' [Cucurbita moschata] >XP_023514252.1 U2 sm...	[more]
XP_023005060.1	1.9e-139	94.76	U2 small nuclear ribonucleoprotein A' [Cucurbita maxima]	[more]
XP_038907085.1	7.3e-139	94.76	U2 small nuclear ribonucleoprotein A' [Benincasa hispida]	[more]
XP_022148876.1	1.5e-136	93.68	U2 small nuclear ribonucleoprotein A' [Momordica charantia]	[more]
XP_004140564.3	3.9e-132	91.26	U2 small nuclear ribonucleoprotein A' [Cucumis sativus] >KAE8646748.1 hypothetic...	[more]

BLAST of Sed0026884 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P43333	2.9e-98	79.92	U2 small nuclear ribonucleoprotein A' OS=Arabidopsis thaliana OX=3702 GN=At1g097...	[more]
P09661	2.6e-54	52.94	U2 small nuclear ribonucleoprotein A' OS=Homo sapiens OX=9606 GN=SNRPA1 PE=1 SV=...	[more]
Q4R8Y8	2.6e-54	52.94	U2 small nuclear ribonucleoprotein A' OS=Macaca fascicularis OX=9541 GN=SNRPA1 P...	[more]
P57784	2.2e-53	52.52	U2 small nuclear ribonucleoprotein A' OS=Mus musculus OX=10090 GN=Snrpa1 PE=1 SV...	[more]
Q9BLB6	2.2e-45	45.80	Probable U2 small nuclear ribonucleoprotein A' OS=Caenorhabditis elegans OX=6239...	[more]

BLAST of Sed0026884 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H905	3.2e-140	95.10	U2 small nuclear ribonucleoprotein A' OS=Cucurbita moschata OX=3662 GN=LOC111461...	[more]
A0A6J1KWC8	9.3e-140	94.76	U2 small nuclear ribonucleoprotein A' OS=Cucurbita maxima OX=3661 GN=LOC11149816...	[more]
A0A6J1D6P1	7.4e-137	93.68	U2 small nuclear ribonucleoprotein A' OS=Momordica charantia OX=3673 GN=LOC11101...	[more]
E5GB46	6.7e-130	90.21	U2 small nuclear ribonucleoprotein a OS=Cucumis melo subsp. melo OX=412675 PE=3 ...	[more]
A0A1S3CAU7	6.7e-130	90.21	U2 small nuclear ribonucleoprotein A' OS=Cucumis melo OX=3656 GN=LOC103498903 PE...	[more]

BLAST of Sed0026884 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09760.1	2.1e-99	79.92	U2 small nuclear ribonucleoprotein A	[more]
AT1G04210.1	7.3e-04	38.37	Leucine-rich repeat protein kinase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003603	U2A'/phosphoprotein 32 family A, C-terminal	SMART	SM00446	LRRcap_2	coord: 128..146 e-value: 0.0018 score: 27.5
None	No IPR available	PFAM	PF14580	LRR_9	coord: 1..173 e-value: 8.1E-80 score: 266.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 241..286
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 249..280
None	No IPR available	PANTHER	PTHR10552:SF8	BNAC08G13840D PROTEIN	coord: 1..243
None	No IPR available	SUPERFAMILY	52058	L domain-like	coord: 14..159
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 1..176 e-value: 2.8E-48 score: 165.2
IPR044640	U2 small nuclear ribonucleoprotein A'	PANTHER	PTHR10552	U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A	coord: 1..243
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 89..110 score: 7.049695

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0026884.1	Sed0026884.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0015030	Cajal body
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005515	protein binding
molecular_function	GO:0030620	U2 snRNA binding