Homology
BLAST of Sed0026800 vs. NCBI nr
Match:
KAG6577717.1 (hypothetical protein SDJN03_25291, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015754.1 hypothetical protein SDJN02_23392 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 358.6 bits (919), Expect = 4.9e-95
Identity = 204/294 (69.39%), Postives = 237/294 (80.61%), Query Frame = 0
Query: 1 MATLDSAIPIVSQYFPSSSFCSSSRLSFVNVSSAIKLRISLSS---------AVSPSSLF 60
MATL+SAIPI+SQY S SSS+LSF + SAIKLRIS SS AVSP LF
Sbjct: 1 MATLESAIPIISQYISS----SSSKLSFHKLPSAIKLRISFSSPLLSLNPTTAVSPLPLF 60
Query: 61 LIHPSSNR----RFCSAVHQLRSDHELSQQNQVDVSTENQKLFVFNFPWSYSDLHIKELF 120
L +PS NR RFCSAV ++ S E S++NQ DV+ + +KL++FN PWS+S + IKE F
Sbjct: 61 LTNPSRNRGGGGRFCSAVQEV-SLEEASEENQ-DVN-QKRKLYIFNLPWSFSVVDIKEHF 120
Query: 121 EQCGTVAAVEIVKQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKK 180
QCGTV VEI+KQKNGRSRG+AFVTMASP+EAQAAI KF+SQEISGRVI VE+AKRLKK
Sbjct: 121 GQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKK 180
Query: 181 SPPPRPAGPPPGESVNKLYVSNLAWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGYG 240
PPP+P GPPPGE+V+KLYVSNLAW+ RS+NLREFFSE+FNP A RVV DS SG+SAGYG
Sbjct: 181 PPPPKPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYG 240
Query: 241 FVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEKESETTKQDIVENQLEES 282
FVSFATR+EAETALSSLEGKELMGRP+RLKFSER +SET K+D VE+Q EES
Sbjct: 241 FVSFATREEAETALSSLEGKELMGRPLRLKFSERTVVKSETPKEDTVESQPEES 287
BLAST of Sed0026800 vs. NCBI nr
Match:
XP_022923294.1 (33 kDa ribonucleoprotein, chloroplastic [Cucurbita moschata])
HSP 1 Score: 358.2 bits (918), Expect = 6.4e-95
Identity = 204/294 (69.39%), Postives = 237/294 (80.61%), Query Frame = 0
Query: 1 MATLDSAIPIVSQYFPSSSFCSSSRLSFVNVSSAIKLRISLSS---------AVSPSSLF 60
MATL+SAIPI+SQY SS SSS+LS + SAIKLRIS SS AVSP LF
Sbjct: 1 MATLESAIPIISQYISSS---SSSKLSIRTLPSAIKLRISFSSPLLSFNPTTAVSPLPLF 60
Query: 61 LIHPSSNR----RFCSAVHQLRSDHELSQQNQVDVSTENQKLFVFNFPWSYSDLHIKELF 120
L +PS NR RFCSAV ++ S E S++NQ DV+ + +KL++FN PWS+S + IKE F
Sbjct: 61 LTNPSRNRGGGGRFCSAVQEV-SLEEASEENQ-DVN-QKRKLYIFNLPWSFSVVDIKEQF 120
Query: 121 EQCGTVAAVEIVKQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKK 180
QCGTV VEI+KQKNGRSRG+AFVTMASP+EAQAAI KF+SQEISGRVI VE+AKRLKK
Sbjct: 121 GQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKK 180
Query: 181 SPPPRPAGPPPGESVNKLYVSNLAWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGYG 240
PPP+P GPPPGE+V+KLYVSNLAW+ RS+NLREFFSE+FNP A RVV DS SG+SAGYG
Sbjct: 181 PPPPKPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYG 240
Query: 241 FVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEKESETTKQDIVENQLEES 282
FVSFATR+EAETALSSLEGKELMGRP+RLKFSER +SET K+D VE+Q EES
Sbjct: 241 FVSFATREEAETALSSLEGKELMGRPLRLKFSERTVVKSETPKEDTVESQPEES 288
BLAST of Sed0026800 vs. NCBI nr
Match:
XP_023007582.1 (29 kDa ribonucleoprotein A, chloroplastic [Cucurbita maxima])
HSP 1 Score: 358.2 bits (918), Expect = 6.4e-95
Identity = 205/297 (69.02%), Postives = 239/297 (80.47%), Query Frame = 0
Query: 1 MATLDSAIPIVSQYF---PSSSFCSSSRLSFVNVSSAIKLRISLSS---------AVSPS 60
MATL+SAIPI+SQY SSS SSS+LSF + SAIKLRIS SS AVSP
Sbjct: 1 MATLESAIPIISQYIASSSSSSSSSSSKLSFHKLPSAIKLRISFSSPLLSLNPTTAVSPL 60
Query: 61 SLFLIHPSSNR----RFCSAVHQLRSDHELSQQNQVDVSTENQKLFVFNFPWSYSDLHIK 120
LFL +P NR RFCSAV ++ S E S++NQ DV+ + +KL++FN PWS+S + IK
Sbjct: 61 PLFLTNPWRNRGGGDRFCSAVQEV-SLEEASEENQ-DVN-QKRKLYIFNLPWSFSVVDIK 120
Query: 121 ELFEQCGTVAAVEIVKQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKR 180
E F QCGTV VEI+KQKNGRSRG+AFVTMASP+EAQAAI KF+SQEISGRVI VE+AKR
Sbjct: 121 EQFGQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKR 180
Query: 181 LKKSPPPRPAGPPPGESVNKLYVSNLAWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSA 240
LKK PPP+P GPPPGE+V+KLYVSNLAW+ RS+NLREFFSE+FNP A RVV DS SG+SA
Sbjct: 181 LKKPPPPKPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSA 240
Query: 241 GYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEKESETTKQDIVENQLEES 282
GYGFVSFATR+EAETALSSLEGKELMGRP+RLKFSER+ +SET K+D VE+Q EES
Sbjct: 241 GYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERSVVKSETPKEDTVESQPEES 294
BLAST of Sed0026800 vs. NCBI nr
Match:
XP_023551853.1 (29 kDa ribonucleoprotein A, chloroplastic [Cucurbita pepo subsp. pepo])
HSP 1 Score: 354.0 bits (907), Expect = 1.2e-93
Identity = 204/295 (69.15%), Postives = 238/295 (80.68%), Query Frame = 0
Query: 1 MATLDSAIPIVSQYF-PSSSFCSSSRLSFVNVSSAIKLRISLSS---------AVSPSSL 60
MATL+SAIPI+SQY SSS SSS+LSF + SAIKLRIS SS AVSP L
Sbjct: 1 MATLESAIPIISQYISSSSSSSSSSKLSFRTLPSAIKLRISSSSPLLSLNPTTAVSPLPL 60
Query: 61 FLIHPSSNR----RFCSAVHQLRSDHELSQQNQVDVSTENQKLFVFNFPWSYSDLHIKEL 120
FL +PS NR RF SAV ++ S E S++NQ DV+ + +KL++FN PWS+S + IKE
Sbjct: 61 FLTNPSRNRGGGGRFGSAVQEV-SLEEASEENQ-DVN-QKRKLYIFNLPWSFSVVDIKEQ 120
Query: 121 FEQCGTVAAVEIVKQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLK 180
F QCGTV VEI+KQKNGRSRG+AFVTMASP+EAQAAI KF+SQEISGRVI VE+AKRLK
Sbjct: 121 FGQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLK 180
Query: 181 KSPPPRPAGPPPGESVNKLYVSNLAWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGY 240
K PPP+P GPPPGE+V+KLYVSNLAW+ RS+NLREFFSE+FNP A RVV DS SG+SAGY
Sbjct: 181 KPPPPKPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGY 240
Query: 241 GFVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEKESETTKQDIVENQLEES 282
GFVSFATR+EAETALSSLEGKELMGRP+RLKFSER+ +SET +D VE+Q EES
Sbjct: 241 GFVSFATREEAETALSSLEGKELMGRPLRLKFSERSVVKSETPTEDTVESQPEES 292
BLAST of Sed0026800 vs. NCBI nr
Match:
XP_038904114.1 (33 kDa ribonucleoprotein, chloroplastic [Benincasa hispida])
HSP 1 Score: 350.5 bits (898), Expect = 1.3e-92
Identity = 202/293 (68.94%), Postives = 231/293 (78.84%), Query Frame = 0
Query: 1 MATLDSAIPIVSQYFPSSSFCSSSRLSFVNVSSAIKLRISLSS---------AVSPSSLF 60
MATL+SAIPI+SQY S SSS+L + SAIKLRIS SS A+SP SL
Sbjct: 1 MATLESAIPIISQYISS----SSSKLRLNKLPSAIKLRISFSSPLRPLNPTTAISPLSLH 60
Query: 61 LIH---PSSNRRFCSAVHQLRSDHELSQQNQVDVSTENQKLFVFNFPWSYSDLHIKELFE 120
L R CSAV ++ S E S+QN+ DV+ + +KL++FN PWS+S + IKELF
Sbjct: 61 LSRNHGGGGGSRLCSAVQEV-SLEEASEQNE-DVN-QKKKLYIFNLPWSFSVVDIKELFG 120
Query: 121 QCGTVAAVEIVKQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKS 180
QCGTV VEI+KQKNGRSRG+AFVTMASP+EAQAAI KF+SQEISGRVI VE+AKRLKK
Sbjct: 121 QCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKP 180
Query: 181 PPPRPAGPPPGESVNKLYVSNLAWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGYGF 240
PPP+P GPPP E+VNKLYVSNLAW+VRSSNLREFFSE+FNP A RVV DS SGRSAGYGF
Sbjct: 181 PPPKPPGPPPVETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGF 240
Query: 241 VSFATRQEAETALSSLEGKELMGRPIRLKFSERNEKESETTKQDIVENQLEES 282
VSFATR+EAETALSSLEGKELMGRP+RLKFSERN ESET K+D VE+Q EES
Sbjct: 241 VSFATREEAETALSSLEGKELMGRPLRLKFSERNVNESETPKEDNVESQPEES 286
BLAST of Sed0026800 vs. ExPASy Swiss-Prot
Match:
P49314 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)
HSP 1 Score: 127.9 bits (320), Expect = 1.8e-28
Identity = 98/273 (35.90%), Postives = 140/273 (51.28%), Query Frame = 0
Query: 18 SSFCSSSRLSFVNV-SSAIKLRISLSSAVSPSSLFLIHPS-SNRRFCSAVHQLRSDHELS 77
SS +S LSF ++ SS++ L +S SS +S+ S S R S QL D E++
Sbjct: 20 SSLKPNSTLSFFSLPSSSLNLSLSSSSIGHSASIKPFESSFSTRVALSDFDQLEDDVEVA 79
Query: 78 QQNQVDVSTENQKLFVFNFPWSYSDLHIKELFEQCGTVAAVEIVKQK-NGRSRGYAFVTM 137
+Q + +E+ KLFV N P+S + LFE+ G V VE++ K +GRSRG+ FVTM
Sbjct: 80 EQPRF---SEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTM 139
Query: 138 ASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPPPRPAGPPPG--------------- 197
++ EE +AA +FN EI GR I V K G G
Sbjct: 140 STKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFG 199
Query: 198 --------ESVNKLYVSNLAWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGYGFVSF 257
+S N++YV NL+W V L+E FSE N +VV D SGRS G+GFV++
Sbjct: 200 GARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTY 259
Query: 258 ATRQEAETALSSLEGKELMGRPIRLKFSERNEK 265
++ +E A+ SL G +L GR IR+ +E +
Sbjct: 260 SSAKEVNDAIDSLNGIDLDGRSIRVSAAEERPR 289
BLAST of Sed0026800 vs. ExPASy Swiss-Prot
Match:
Q08937 (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)
HSP 1 Score: 127.9 bits (320), Expect = 1.8e-28
Identity = 100/275 (36.36%), Postives = 139/275 (50.55%), Query Frame = 0
Query: 18 SSFCSSSRLSFVNVSSAIKLRISLSSAVSPSSLFLIHP----SSNRRFCSAVHQLRSDHE 77
SS +S LSF ++ S+ L +SLSS S + L I P S R S QL D E
Sbjct: 20 SSLKPNSTLSFFSLPSS-SLNLSLSS--SSTGLCSIKPFESSFSTRVALSGFDQLEDDVE 79
Query: 78 LSQQNQVDVSTENQKLFVFNFPWSYSDLHIKELFEQCGTVAAVEIVKQK-NGRSRGYAFV 137
+++Q + +E+ KLFV N P+S + LFE+ G V VE++ K GRSRG+ FV
Sbjct: 80 VAEQPRF---SEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFV 139
Query: 138 TMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPPPRPAGPPPG------------- 197
TM++ EE +AA +FN EI GR I V K G G
Sbjct: 140 TMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSS 199
Query: 198 ----------ESVNKLYVSNLAWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGYGFV 257
+S N++YV NL+W V L+E FSE N +VV D SGRS G+GFV
Sbjct: 200 FGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFV 259
Query: 258 SFATRQEAETALSSLEGKELMGRPIRLKFSERNEK 265
++++ +E A+ SL G +L GR IR+ +E +
Sbjct: 260 TYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERPR 288
BLAST of Sed0026800 vs. ExPASy Swiss-Prot
Match:
Q08935 (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)
HSP 1 Score: 125.6 bits (314), Expect = 9.1e-28
Identity = 86/238 (36.13%), Postives = 122/238 (51.26%), Query Frame = 0
Query: 44 AVSPSSLFLIHPSSNRRFCSAVHQLRSDHELSQQNQVDVSTE----------NQKLFVFN 103
++ PSSL L SS+ F S + + + Q V+ + + K+FV N
Sbjct: 34 SLPPSSLNLSLSSSSSCFSSRFVRKVTLSDFDQIEDVEDGDDGVEEERNFSPDLKIFVGN 93
Query: 104 FPWSYSDLHIKELFEQCGTVAAVEIVKQK-NGRSRGYAFVTMASPEEAQAAIHKFNSQEI 163
P+S + ELFE+ G V VE++ K GRSRG+ FVTM+S EE +AA +FN E+
Sbjct: 94 LPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYEL 153
Query: 164 SGRVILVEYAKRLKKSPPPR----------PAGPPPGESVNKLYVSNLAWQVRSSNLREF 223
GR A R+ PPP G +S N++YV NLAW V L
Sbjct: 154 DGR------ALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETL 213
Query: 224 FSESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSE 261
FSE +VV D SGRS G+GFV++++ +E A+ SL+G +L GR IR+ +E
Sbjct: 214 FSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 265
BLAST of Sed0026800 vs. ExPASy Swiss-Prot
Match:
P19684 (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)
HSP 1 Score: 122.1 bits (305), Expect = 1.0e-26
Identity = 78/233 (33.48%), Postives = 125/233 (53.65%), Query Frame = 0
Query: 31 VSSAIKLRISLSSAVSPSSLFLIHPSSNRRFCSAVHQLRSDHELSQQNQVDVSTENQKLF 90
+SS + I LS+ S S + + + + + E ++ S E +L+
Sbjct: 58 ISSLYRSSIFLSTCASVSDGVEVVQEDDEEEVALSAEEEEEIEEKEERVESESVEGGRLY 117
Query: 91 VFNFPWSYSDLHIKELFEQCGTVAAVEIVKQK-NGRSRGYAFVTMASPEEAQAAIHKFNS 150
V N P+S + + E+F + GTVA VEIV + RSRG+AFVTM S EEA+ AI F+
Sbjct: 118 VGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDG 177
Query: 151 QEISGRVILVEY------AKRLKKSPPPRPAGPPPGESVNKLYVSNLAWQVRSSNLREFF 210
++ GR + V + +R S R +S +KLYV+NL+W + S LR+ F
Sbjct: 178 SQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAF 237
Query: 211 SESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRL 257
++ + +V+ D SGRS G+GF++F++ + +AL ++ EL GRP+RL
Sbjct: 238 ADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRL 290
BLAST of Sed0026800 vs. ExPASy Swiss-Prot
Match:
Q04836 (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31A PE=1 SV=1)
HSP 1 Score: 121.3 bits (303), Expect = 1.7e-26
Identity = 71/192 (36.98%), Postives = 110/192 (57.29%), Query Frame = 0
Query: 70 SDHELSQQNQVDVSTENQKLFVFNFPWSYSDLHIKELFEQCGTVAAVEIV-KQKNGRSRG 129
S+ +S++ + +E KLFV N + + + LFEQ GTV E++ ++ +SRG
Sbjct: 133 SEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRG 192
Query: 130 YAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPPPRPAGPPPGESVNKLYVS 189
+ FVTM+S +EA+ A+ KFN +++GR++ V A + S P R P E ++YV
Sbjct: 193 FGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAP-RGSRPER--APRVYEPAFRVYVG 252
Query: 190 NLAWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKE 249
NL W V + L + FSE RVV D +GRS G+GFV+ + E A+S+L+G+
Sbjct: 253 NLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQN 312
Query: 250 LMGRPIRLKFSE 261
L GR IR+ +E
Sbjct: 313 LEGRAIRVNVAE 321
BLAST of Sed0026800 vs. ExPASy TrEMBL
Match:
A0A6J1KZ42 (29 kDa ribonucleoprotein A, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111500156 PE=4 SV=1)
HSP 1 Score: 358.2 bits (918), Expect = 3.1e-95
Identity = 205/297 (69.02%), Postives = 239/297 (80.47%), Query Frame = 0
Query: 1 MATLDSAIPIVSQYF---PSSSFCSSSRLSFVNVSSAIKLRISLSS---------AVSPS 60
MATL+SAIPI+SQY SSS SSS+LSF + SAIKLRIS SS AVSP
Sbjct: 1 MATLESAIPIISQYIASSSSSSSSSSSKLSFHKLPSAIKLRISFSSPLLSLNPTTAVSPL 60
Query: 61 SLFLIHPSSNR----RFCSAVHQLRSDHELSQQNQVDVSTENQKLFVFNFPWSYSDLHIK 120
LFL +P NR RFCSAV ++ S E S++NQ DV+ + +KL++FN PWS+S + IK
Sbjct: 61 PLFLTNPWRNRGGGDRFCSAVQEV-SLEEASEENQ-DVN-QKRKLYIFNLPWSFSVVDIK 120
Query: 121 ELFEQCGTVAAVEIVKQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKR 180
E F QCGTV VEI+KQKNGRSRG+AFVTMASP+EAQAAI KF+SQEISGRVI VE+AKR
Sbjct: 121 EQFGQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKR 180
Query: 181 LKKSPPPRPAGPPPGESVNKLYVSNLAWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSA 240
LKK PPP+P GPPPGE+V+KLYVSNLAW+ RS+NLREFFSE+FNP A RVV DS SG+SA
Sbjct: 181 LKKPPPPKPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSA 240
Query: 241 GYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEKESETTKQDIVENQLEES 282
GYGFVSFATR+EAETALSSLEGKELMGRP+RLKFSER+ +SET K+D VE+Q EES
Sbjct: 241 GYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERSVVKSETPKEDTVESQPEES 294
BLAST of Sed0026800 vs. ExPASy TrEMBL
Match:
A0A6J1E5Z7 (33 kDa ribonucleoprotein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111431035 PE=4 SV=1)
HSP 1 Score: 358.2 bits (918), Expect = 3.1e-95
Identity = 204/294 (69.39%), Postives = 237/294 (80.61%), Query Frame = 0
Query: 1 MATLDSAIPIVSQYFPSSSFCSSSRLSFVNVSSAIKLRISLSS---------AVSPSSLF 60
MATL+SAIPI+SQY SS SSS+LS + SAIKLRIS SS AVSP LF
Sbjct: 1 MATLESAIPIISQYISSS---SSSKLSIRTLPSAIKLRISFSSPLLSFNPTTAVSPLPLF 60
Query: 61 LIHPSSNR----RFCSAVHQLRSDHELSQQNQVDVSTENQKLFVFNFPWSYSDLHIKELF 120
L +PS NR RFCSAV ++ S E S++NQ DV+ + +KL++FN PWS+S + IKE F
Sbjct: 61 LTNPSRNRGGGGRFCSAVQEV-SLEEASEENQ-DVN-QKRKLYIFNLPWSFSVVDIKEQF 120
Query: 121 EQCGTVAAVEIVKQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKK 180
QCGTV VEI+KQKNGRSRG+AFVTMASP+EAQAAI KF+SQEISGRVI VE+AKRLKK
Sbjct: 121 GQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKK 180
Query: 181 SPPPRPAGPPPGESVNKLYVSNLAWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGYG 240
PPP+P GPPPGE+V+KLYVSNLAW+ RS+NLREFFSE+FNP A RVV DS SG+SAGYG
Sbjct: 181 PPPPKPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYG 240
Query: 241 FVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEKESETTKQDIVENQLEES 282
FVSFATR+EAETALSSLEGKELMGRP+RLKFSER +SET K+D VE+Q EES
Sbjct: 241 FVSFATREEAETALSSLEGKELMGRPLRLKFSERTVVKSETPKEDTVESQPEES 288
BLAST of Sed0026800 vs. ExPASy TrEMBL
Match:
A0A6J1CW05 (30 kDa ribonucleoprotein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111014805 PE=4 SV=1)
HSP 1 Score: 345.9 bits (886), Expect = 1.6e-91
Identity = 202/284 (71.13%), Postives = 231/284 (81.34%), Query Frame = 0
Query: 6 SAIPIVSQYFPSSS---FCSSSRLSF-VNVSSAIKLRISLSSAVSPSSLFLIHPSSNR-- 65
SAIP +S + SSS SSSR+SF N+SSAIKLRIS S+ + L L PS +R
Sbjct: 7 SAIPTISAHPYSSSPSPSSSSSRISFSSNLSSAIKLRISFSAPL----LSLAPPSLSRDR 66
Query: 66 -RFCSAVHQLRSDHELSQQNQVDVSTENQKLFVFNFPWSYSDLHIKELFEQCGTVAAVEI 125
R CSAV ++ S E S+QNQ +KL++FN PWS+S + IKELF QCGTV VEI
Sbjct: 67 GRLCSAVQEV-SLEEASEQNQ------KKKLYIFNLPWSFSVVEIKELFGQCGTVTDVEI 126
Query: 126 VKQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPPPRPAGPPP 185
+KQKNGRSRG+AF+TMASPEEAQAAI KF+SQEISGRVI VE+AKRLKK PPPRP GPPP
Sbjct: 127 IKQKNGRSRGFAFLTMASPEEAQAAIEKFDSQEISGRVIKVEFAKRLKKPPPPRPPGPPP 186
Query: 186 GESVNKLYVSNLAWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAE 245
GE+VNKLYVSNLAW+VRS+NLREFFS+S NPTAGRVV DSLSGRSAGYGFVSFATR+EAE
Sbjct: 187 GETVNKLYVSNLAWKVRSNNLREFFSQSCNPTAGRVVFDSLSGRSAGYGFVSFATREEAE 246
Query: 246 TALSSLEGKELMGRPIRLKFSERNEKES-ETTKQDIVENQLEES 282
TALSSLEGKELMGRP+RLKFSER+ KES E TK+DIVE+Q EES
Sbjct: 247 TALSSLEGKELMGRPLRLKFSERSVKESEEATKEDIVESQTEES 279
BLAST of Sed0026800 vs. ExPASy TrEMBL
Match:
A0A0A0L1U2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G009490 PE=4 SV=1)
HSP 1 Score: 345.5 bits (885), Expect = 2.1e-91
Identity = 192/291 (65.98%), Postives = 233/291 (80.07%), Query Frame = 0
Query: 1 MATLDSAIPIVSQYFPSSSFCSSSRLSFVNVSSAIKLRISLSSAV------SPSSLFLIH 60
M T++S +PI+S Y SSS S+S+L F + S IKLRIS SS + +P S +
Sbjct: 1 MVTIESPLPIISPYISSSSSSSASKLCFNKLPSPIKLRISFSSPLLSLNPTTPISPTSFN 60
Query: 61 PSSNR----RFCSAVHQLRSDHELSQQNQVDVSTENQKLFVFNFPWSYSDLHIKELFEQC 120
S NR R CSA+ ++ + E S++NQ DV+ + +KL++FN PWS S + IKELF QC
Sbjct: 61 SSRNRGGGARLCSALQEVTLE-EASEENQ-DVN-QKRKLYIFNLPWSLSVVDIKELFGQC 120
Query: 121 GTVAAVEIVKQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPP 180
GTV+ VEI+KQKNGRSRG+AFVTMASP+EAQAAI KF+SQEISGRVI VE+AKRLKK PP
Sbjct: 121 GTVSDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPP 180
Query: 181 PRPAGPPPGESVNKLYVSNLAWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGYGFVS 240
P+P GPPPGE+VNKLYVSNLAW+VRS+NLR+FFSE+FNP A RVV DS +GRSAGYGFVS
Sbjct: 181 PKPPGPPPGETVNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVS 240
Query: 241 FATRQEAETALSSLEGKELMGRPIRLKFSERNEKESETTKQDIVENQLEES 282
FATR+EA+TALSSLEGKELMGRP+RLKFSERN E+ET K+DIVE+Q EES
Sbjct: 241 FATREEAQTALSSLEGKELMGRPLRLKFSERNVNEAETPKEDIVESQPEES 288
BLAST of Sed0026800 vs. ExPASy TrEMBL
Match:
A0A1S3BK84 (28 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103490770 PE=4 SV=1)
HSP 1 Score: 345.1 bits (884), Expect = 2.7e-91
Identity = 197/291 (67.70%), Postives = 231/291 (79.38%), Query Frame = 0
Query: 1 MATLDSAIPIVSQYFPSSSFCSSSRLSFVNVSSAIKLRISLSS---------AVSPSSL- 60
MATL+SA+PI+S Y SS SSS+L F + SAIKLRIS SS +SP S
Sbjct: 1 MATLESALPIISPYVSSS---SSSKLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISFN 60
Query: 61 FLIHPSSNRRFCSAVHQLRSDHELSQQNQVDVSTENQKLFVFNFPWSYSDLHIKELFEQC 120
+P R CSAV ++ S E S++ Q DV+ + +KL++FN PWS S + IKELF QC
Sbjct: 61 SSRNPGGGGRLCSAVQEV-SLEEASEETQ-DVN-QKKKLYIFNLPWSLSVVDIKELFGQC 120
Query: 121 GTVAAVEIVKQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPP 180
GTV+ VEI+KQKNGRSRG+AFVTMASP+EAQAAI KF+SQEISGRVI VE+AKR K+ PP
Sbjct: 121 GTVSDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKRPPP 180
Query: 181 PRPAGPPPGESVNKLYVSNLAWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGYGFVS 240
P+P GPPPGE+VNKLYVSNLAW+VRSSNLR+FFSESFNP A RVV DS SGRSAGYGFVS
Sbjct: 181 PKPPGPPPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGYGFVS 240
Query: 241 FATRQEAETALSSLEGKELMGRPIRLKFSERNEKESETTKQDIVENQLEES 282
FATR+EA+TALSSLEGKELMGRP+RLKFSER+ ESET K+DIVE+Q EES
Sbjct: 241 FATREEAQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES 285
BLAST of Sed0026800 vs. TAIR 10
Match:
AT2G35410.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )
HSP 1 Score: 224.2 bits (570), Expect = 1.3e-58
Identity = 139/282 (49.29%), Postives = 183/282 (64.89%), Query Frame = 0
Query: 1 MATLDSAIPIVSQYFPSSSFCSSSRLSFVNVSSAIK---LRISLSSAVSPSSLFLIHPSS 60
MA L++++ I S SSS SS F SS++K L + + S +SP +
Sbjct: 1 MAVLEASLSIFSF---SSSSSSSKPYLFSKRSSSLKLTALSLRIPSNLSPVFSLRSGSDN 60
Query: 61 NRR----FCSAVHQLRSDHELSQQNQVDVSTEN----QKLFVFNFPWSYSDLHIKELFEQ 120
+RR CS + S E + Q + T+N +KLFVFN PWS S I ELF Q
Sbjct: 61 SRRLVSVLCSVAEKETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQ 120
Query: 121 CGTVAAVEIVKQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSP 180
CGTV VEI++QK+G++RG+AFVTMAS EEAQAAI KF++ ++SGR+I V +A+R KK
Sbjct: 121 CGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPT 180
Query: 181 PPRP---AGPPPGESVNKLYVSNLAWQVRSSNLREFFSES-FNPTAGRVVLDSLSGRSAG 240
P P P PG++ +KLYVSNLAW+ RS++LRE F+ + FNP + RVV GRS+G
Sbjct: 181 PKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSG 240
Query: 241 YGFVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEKESE 268
YGFVSFATR+EAE A++ L GKE+MGRPI LKFS R+ ESE
Sbjct: 241 YGFVSFATREEAENAITKLNGKEIMGRPITLKFSLRSASESE 279
BLAST of Sed0026800 vs. TAIR 10
Match:
AT4G09040.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )
HSP 1 Score: 126.3 bits (316), Expect = 3.8e-29
Identity = 79/212 (37.26%), Postives = 116/212 (54.72%), Query Frame = 0
Query: 70 SDHELSQQNQVDVSTENQKLFVFNFPWSYSDLHIKELFEQCGTVAAVEIVKQKNGRSRGY 129
S S V+ +L N PW+ + I+ LFE+ G+V +E+ K R+RG
Sbjct: 77 SSSSSSAPEVVEEEISKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGL 136
Query: 130 AFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPPPRPAGPPPGESVNKLYVSN 189
F+ MASPEEA A+ S E GR + V+YAK KK P P + N L+V+N
Sbjct: 137 VFIEMASPEEAATALKSLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFN-LFVAN 196
Query: 190 LAWQVRSSNLREFF-SESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKE 249
LA++ R+ +L+EFF +++ N + V+ RS+GYGFVSF T+++AE AL +GK+
Sbjct: 197 LAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKD 256
Query: 250 LMGRPIRLKFSERNEKESETTKQDIVENQLEE 281
+GRPIRL S++ K E + EE
Sbjct: 257 FLGRPIRLAKSKQFVKLQAKEGLQPPEEEAEE 287
BLAST of Sed0026800 vs. TAIR 10
Match:
AT4G09040.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )
HSP 1 Score: 125.9 bits (315), Expect = 5.0e-29
Identity = 76/194 (39.18%), Postives = 112/194 (57.73%), Query Frame = 0
Query: 88 KLFVFNFPWSYSDLHIKELFEQCGTVAAVEIVKQKNGRSRGYAFVTMASPEEAQAAIHKF 147
+L N PW+ + I+ LFE+ G+V +E+ K R+RG F+ MASPEEA A+
Sbjct: 35 RLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSL 94
Query: 148 NSQEISGRVILVEYAKRLKKSPPPRPAGPPPGESVNKLYVSNLAWQVRSSNLREFF-SES 207
S E GR + V+YAK KK P P + N L+V+NLA++ R+ +L+EFF +++
Sbjct: 95 ESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFN-LFVANLAFEARAKHLKEFFDADT 154
Query: 208 FNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEKES 267
N + V+ RS+GYGFVSF T+++AE AL +GK+ +GRPIRL S++ K
Sbjct: 155 GNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVKLQ 214
Query: 268 ETTKQDIVENQLEE 281
E + EE
Sbjct: 215 AKEGLQPPEEEAEE 227
BLAST of Sed0026800 vs. TAIR 10
Match:
AT4G24770.1 (31-kDa RNA binding protein )
HSP 1 Score: 121.3 bits (303), Expect = 1.2e-27
Identity = 71/192 (36.98%), Postives = 110/192 (57.29%), Query Frame = 0
Query: 70 SDHELSQQNQVDVSTENQKLFVFNFPWSYSDLHIKELFEQCGTVAAVEIV-KQKNGRSRG 129
S+ +S++ + +E KLFV N + + + LFEQ GTV E++ ++ +SRG
Sbjct: 133 SEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRG 192
Query: 130 YAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPPPRPAGPPPGESVNKLYVS 189
+ FVTM+S +EA+ A+ KFN +++GR++ V A + S P R P E ++YV
Sbjct: 193 FGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAP-RGSRPER--APRVYEPAFRVYVG 252
Query: 190 NLAWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKE 249
NL W V + L + FSE RVV D +GRS G+GFV+ + E A+S+L+G+
Sbjct: 253 NLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQN 312
Query: 250 LMGRPIRLKFSE 261
L GR IR+ +E
Sbjct: 313 LEGRAIRVNVAE 321
BLAST of Sed0026800 vs. TAIR 10
Match:
AT5G50250.1 (chloroplast RNA-binding protein 31B )
HSP 1 Score: 119.0 bits (297), Expect = 6.1e-27
Identity = 70/181 (38.67%), Postives = 102/181 (56.35%), Query Frame = 0
Query: 85 ENQKLFVFNFPWSYSDLHIKELFEQCGTVAAVEIVKQKN-GRSRGYAFVTMASPEEAQAA 144
E KLFV N P+ + LFEQ GTV E++ ++ +SRG+ FVTM++ EEA+ A
Sbjct: 111 EEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKA 170
Query: 145 IHKFNSQEISGRVILVEYAKRLKKSPPPRPAGPPPGESVNKLYVSNLAWQVRSSNLREFF 204
+ KFNS E++GR + V A + S P R P ++ ++YV NL W V S L F
Sbjct: 171 VEKFNSFEVNGRRLTVNRAAP-RGSRPERQ--PRVYDAAFRIYVGNLPWDVDSGRLERLF 230
Query: 205 SESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSERNE 264
SE RVV D +GRS G+GFV + E A+++L+G+ L GR I++ +E
Sbjct: 231 SEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERT 288
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG6577717.1 | 4.9e-95 | 69.39 | hypothetical protein SDJN03_25291, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_022923294.1 | 6.4e-95 | 69.39 | 33 kDa ribonucleoprotein, chloroplastic [Cucurbita moschata] | [more] |
XP_023007582.1 | 6.4e-95 | 69.02 | 29 kDa ribonucleoprotein A, chloroplastic [Cucurbita maxima] | [more] |
XP_023551853.1 | 1.2e-93 | 69.15 | 29 kDa ribonucleoprotein A, chloroplastic [Cucurbita pepo subsp. pepo] | [more] |
XP_038904114.1 | 1.3e-92 | 68.94 | 33 kDa ribonucleoprotein, chloroplastic [Benincasa hispida] | [more] |
Match Name | E-value | Identity | Description | |
P49314 | 1.8e-28 | 35.90 | 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=... | [more] |
Q08937 | 1.8e-28 | 36.36 | 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S... | [more] |
Q08935 | 9.1e-28 | 36.13 | 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S... | [more] |
P19684 | 1.0e-26 | 33.48 | 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=... | [more] |
Q04836 | 1.7e-26 | 36.98 | 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31A... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1KZ42 | 3.1e-95 | 69.02 | 29 kDa ribonucleoprotein A, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC1115... | [more] |
A0A6J1E5Z7 | 3.1e-95 | 69.39 | 33 kDa ribonucleoprotein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1114... | [more] |
A0A6J1CW05 | 1.6e-91 | 71.13 | 30 kDa ribonucleoprotein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111... | [more] |
A0A0A0L1U2 | 2.1e-91 | 65.98 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G009490 PE=4 SV=1 | [more] |
A0A1S3BK84 | 2.7e-91 | 67.70 | 28 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103490770 ... | [more] |