Sed0026674 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTCCACAAACCTTTTTTCTCCAAATAATATAATCTCTCTAAAACCAAACAATTCAAATGTGGCGGTTGGCGGCGGCGGCGGTGAGAAAAAACCTCCACAACATGAGGAAGAGCCCACGAGTGGCAGATGAAAGTATGCACAACGGTGGCAGCGATGGCGGCAGAAGGGTGGTCGATGGCGGCCGGAGAATCGGGTTTTCGATGATTTACAGTGTTCTTCGAACCCCATTTTCAATTCTCTCTTGCTTCTCTCAACCGCACGTTAATGGCGTCGACGGAATGTGGGTTTCCGGCGAGTTCGCCGGAGTGTCGGAAGTTAATCATCTTATGGTAAGAGATAGCATGAGATATGCAATTTTGATGTAAATAATTTGGTTTAATTTTGTGCTGTCGATTTTGTATCTGGTTTTCAAAGACACAAATCGAATGTTACATGTTATTATTGTTATATAGAGCCTGATTGGGATATAGTTTGGATTATTGGAGTTTTTTTTTAATAAATTTTTTCCTTATGTTTGTTTTTAAGAATATTGTAATACAAT CTCCACAAACCTTTTTTCTCCAAATAATATAATCTCTCTAAAACCAAACAATTCAAATGTGGCGGTTGGCGGCGGCGGCGGTGAGAAAAAACCTCCACAACATGAGGAAGAGCCCACGAGTGGCAGATGAAAGTATGCACAACGGTGGCAGCGATGGCGGCAGAAGGGTGGTCGATGGCGGCCGGAGAATCGGGTTTTCGATGATTTACAGTGTTCTTCGAACCCCATTTTCAATTCTCTCTTGCTTCTCTCAACCGCACGTTAATGGCGTCGACGGAATGTGGGTTTCCGGCGAGTTCGCCGGAGTGTCGGAAGTTAATCATCTTATGGTAAGAGATAGCATGAGATATGCAATTTTGATGTAAATAATTTGGTTTAATTTTGTGCTGTCGATTTTGTATCTGGTTTTCAAAGACACAAATCGAATGTTACATGTTATTATTGTTATATAGAGCCTGATTGGGATATAGTTTGGATTATTGGAGTTTTTTTTTAATAAATTTTTTCCTTATGTTTGTTTTTAAGAATATTGTAATACAAT ATGTGGCGGTTGGCGGCGGCGGCGGTGAGAAAAAACCTCCACAACATGAGGAAGAGCCCACGAGTGGCAGATGAAAGTATGCACAACGGTGGCAGCGATGGCGGCAGAAGGGTGGTCGATGGCGGCCGGAGAATCGGGTTTTCGATGATTTACAGTGTTCTTCGAACCCCATTTTCAATTCTCTCTTGCTTCTCTCAACCGCACGTTAATGGCGTCGACGGAATGTGGGTTTCCGGCGAGTTCGCCGGAGTGTCGGAAGTTAATCATCTTATGGTAAGAGATAGCATGAGATATGCAATTTTGATGTAA MWRLAAAAVRKNLHNMRKSPRVADESMHNGGSDGGRRVVDGGRRIGFSMIYSVLRTPFSILSCFSQPHVNGVDGMWVSGEFAGVSEVNHLMVRDSMRYAILM Homology
BLAST of Sed0026674 vs. NCBI nr
Match: XP_031744820.1 (uncharacterized protein LOC101211016 [Cucumis sativus] >KAE8645720.1 hypothetical protein Csa_020583 [Cucumis sativus]) HSP 1 Score: 166.8 bits (421), Expect = 9.9e-38 Identity = 88/109 (80.73%), Postives = 93/109 (85.32%), Query Frame = 0
BLAST of Sed0026674 vs. NCBI nr
Match: KAG6572248.1 (hypothetical protein SDJN03_28976, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011878.1 hypothetical protein SDJN02_26785, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 166.8 bits (421), Expect = 9.9e-38 Identity = 85/108 (78.70%), Postives = 95/108 (87.96%), Query Frame = 0
BLAST of Sed0026674 vs. NCBI nr
Match: KAA0059153.1 (uncharacterized protein E6C27_scaffold430G00710 [Cucumis melo var. makuwa] >TYK02535.1 uncharacterized protein E5676_scaffold201G00140 [Cucumis melo var. makuwa]) HSP 1 Score: 166.4 bits (420), Expect = 1.3e-37 Identity = 88/110 (80.00%), Postives = 93/110 (84.55%), Query Frame = 0
BLAST of Sed0026674 vs. NCBI nr
Match: XP_023554647.1 (uncharacterized protein LOC111811837 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 164.9 bits (416), Expect = 3.8e-37 Identity = 84/108 (77.78%), Postives = 94/108 (87.04%), Query Frame = 0
BLAST of Sed0026674 vs. NCBI nr
Match: XP_022969305.1 (uncharacterized protein LOC111468352 [Cucurbita maxima]) HSP 1 Score: 164.9 bits (416), Expect = 3.8e-37 Identity = 84/108 (77.78%), Postives = 94/108 (87.04%), Query Frame = 0
BLAST of Sed0026674 vs. ExPASy TrEMBL
Match: A0A5D3BTM8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold201G00140 PE=4 SV=1) HSP 1 Score: 166.4 bits (420), Expect = 6.3e-38 Identity = 88/110 (80.00%), Postives = 93/110 (84.55%), Query Frame = 0
BLAST of Sed0026674 vs. ExPASy TrEMBL
Match: A0A6J1HZK3 (uncharacterized protein LOC111468352 OS=Cucurbita maxima OX=3661 GN=LOC111468352 PE=4 SV=1) HSP 1 Score: 164.9 bits (416), Expect = 1.8e-37 Identity = 84/108 (77.78%), Postives = 94/108 (87.04%), Query Frame = 0
BLAST of Sed0026674 vs. ExPASy TrEMBL
Match: A0A6J1ER34 (uncharacterized protein LOC111437033 OS=Cucurbita moschata OX=3662 GN=LOC111437033 PE=4 SV=1) HSP 1 Score: 160.2 bits (404), Expect = 4.5e-36 Identity = 85/108 (78.70%), Postives = 90/108 (83.33%), Query Frame = 0
BLAST of Sed0026674 vs. ExPASy TrEMBL
Match: A0A6J1C6U0 (uncharacterized protein LOC111007908 OS=Momordica charantia OX=3673 GN=LOC111007908 PE=4 SV=1) HSP 1 Score: 155.6 bits (392), Expect = 1.1e-34 Identity = 80/107 (74.77%), Postives = 88/107 (82.24%), Query Frame = 0
BLAST of Sed0026674 vs. ExPASy TrEMBL
Match: A0A1S3C134 (uncharacterized protein LOC103495667 OS=Cucumis melo OX=3656 GN=LOC103495667 PE=4 SV=1) HSP 1 Score: 148.3 bits (373), Expect = 1.8e-32 Identity = 78/99 (78.79%), Postives = 83/99 (83.84%), Query Frame = 0
BLAST of Sed0026674 vs. TAIR 10
Match: AT5G35732.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04795.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 112.1 bits (279), Expect = 2.7e-25 Identity = 55/97 (56.70%), Postives = 74/97 (76.29%), Query Frame = 0
BLAST of Sed0026674 vs. TAIR 10
Match: AT2G04795.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35732.1); Has 18 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 92.4 bits (228), Expect = 2.2e-19 Identity = 50/98 (51.02%), Postives = 63/98 (64.29%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|