Sed0026674 (gene) Chayote v1

Overview
NameSed0026674
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG05: 33948118 .. 33948658 (+)
RNA-Seq ExpressionSed0026674
SyntenySed0026674
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCCACAAACCTTTTTTCTCCAAATAATATAATCTCTCTAAAACCAAACAATTCAAATGTGGCGGTTGGCGGCGGCGGCGGTGAGAAAAAACCTCCACAACATGAGGAAGAGCCCACGAGTGGCAGATGAAAGTATGCACAACGGTGGCAGCGATGGCGGCAGAAGGGTGGTCGATGGCGGCCGGAGAATCGGGTTTTCGATGATTTACAGTGTTCTTCGAACCCCATTTTCAATTCTCTCTTGCTTCTCTCAACCGCACGTTAATGGCGTCGACGGAATGTGGGTTTCCGGCGAGTTCGCCGGAGTGTCGGAAGTTAATCATCTTATGGTAAGAGATAGCATGAGATATGCAATTTTGATGTAAATAATTTGGTTTAATTTTGTGCTGTCGATTTTGTATCTGGTTTTCAAAGACACAAATCGAATGTTACATGTTATTATTGTTATATAGAGCCTGATTGGGATATAGTTTGGATTATTGGAGTTTTTTTTTAATAAATTTTTTCCTTATGTTTGTTTTTAAGAATATTGTAATACAAT

mRNA sequence

CTCCACAAACCTTTTTTCTCCAAATAATATAATCTCTCTAAAACCAAACAATTCAAATGTGGCGGTTGGCGGCGGCGGCGGTGAGAAAAAACCTCCACAACATGAGGAAGAGCCCACGAGTGGCAGATGAAAGTATGCACAACGGTGGCAGCGATGGCGGCAGAAGGGTGGTCGATGGCGGCCGGAGAATCGGGTTTTCGATGATTTACAGTGTTCTTCGAACCCCATTTTCAATTCTCTCTTGCTTCTCTCAACCGCACGTTAATGGCGTCGACGGAATGTGGGTTTCCGGCGAGTTCGCCGGAGTGTCGGAAGTTAATCATCTTATGGTAAGAGATAGCATGAGATATGCAATTTTGATGTAAATAATTTGGTTTAATTTTGTGCTGTCGATTTTGTATCTGGTTTTCAAAGACACAAATCGAATGTTACATGTTATTATTGTTATATAGAGCCTGATTGGGATATAGTTTGGATTATTGGAGTTTTTTTTTAATAAATTTTTTCCTTATGTTTGTTTTTAAGAATATTGTAATACAAT

Coding sequence (CDS)

ATGTGGCGGTTGGCGGCGGCGGCGGTGAGAAAAAACCTCCACAACATGAGGAAGAGCCCACGAGTGGCAGATGAAAGTATGCACAACGGTGGCAGCGATGGCGGCAGAAGGGTGGTCGATGGCGGCCGGAGAATCGGGTTTTCGATGATTTACAGTGTTCTTCGAACCCCATTTTCAATTCTCTCTTGCTTCTCTCAACCGCACGTTAATGGCGTCGACGGAATGTGGGTTTCCGGCGAGTTCGCCGGAGTGTCGGAAGTTAATCATCTTATGGTAAGAGATAGCATGAGATATGCAATTTTGATGTAA

Protein sequence

MWRLAAAAVRKNLHNMRKSPRVADESMHNGGSDGGRRVVDGGRRIGFSMIYSVLRTPFSILSCFSQPHVNGVDGMWVSGEFAGVSEVNHLMVRDSMRYAILM
Homology
BLAST of Sed0026674 vs. NCBI nr
Match: XP_031744820.1 (uncharacterized protein LOC101211016 [Cucumis sativus] >KAE8645720.1 hypothetical protein Csa_020583 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 9.9e-38
Identity = 88/109 (80.73%), Postives = 93/109 (85.32%), Query Frame = 0

Query: 1   MWRLAAAAVRKNLHNMRKSPRVADESMHNGGSDGGRR---VVDGGRR----IGFSMIYSV 60
           MWRL AAAVR+NLHN+RKSPRVADESM+ GG DGG R   VVDG RR     GFSMIYS+
Sbjct: 1   MWRL-AAAVRRNLHNIRKSPRVADESMYGGGVDGGGRVGAVVDGDRREGNSYGFSMIYSL 60

Query: 61  LRTPFSILSCFSQPHVNGVDGMWVSGEFAGVSEVNHLMVRDSMRYAILM 103
           LRTPFSILSCFSQPHVNGVDGMWVSGEF  +SEVNHLMV DSMRYAILM
Sbjct: 61  LRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 108

BLAST of Sed0026674 vs. NCBI nr
Match: KAG6572248.1 (hypothetical protein SDJN03_28976, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011878.1 hypothetical protein SDJN02_26785, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166.8 bits (421), Expect = 9.9e-38
Identity = 85/108 (78.70%), Postives = 95/108 (87.96%), Query Frame = 0

Query: 1   MWRLAAAAVRKNLHNMRKSPRVADESMHN--GGSDGGRRVVDGGRR----IGFSMIYSVL 60
           MWRL AAAVR+NLHN+RKSPRVADESM++  GG+DGG RV+DG RR     GFSMIY++L
Sbjct: 1   MWRL-AAAVRRNLHNIRKSPRVADESMYSAGGGADGGGRVIDGNRRDGNSYGFSMIYTLL 60

Query: 61  RTPFSILSCFSQPHVNGVDGMWVSGEFAGVSEVNHLMVRDSMRYAILM 103
           RTPFS+LSCFSQPHVNGVDGMWVSGEF  +SEVNHLMV DSMRYAILM
Sbjct: 61  RTPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 107

BLAST of Sed0026674 vs. NCBI nr
Match: KAA0059153.1 (uncharacterized protein E6C27_scaffold430G00710 [Cucumis melo var. makuwa] >TYK02535.1 uncharacterized protein E5676_scaffold201G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 166.4 bits (420), Expect = 1.3e-37
Identity = 88/110 (80.00%), Postives = 93/110 (84.55%), Query Frame = 0

Query: 1   MWRLAAAAVRKNLHNMRKSPRVADESMHNGGSDGGRR----VVDGGRR----IGFSMIYS 60
           MWRL AAAVR+NLHN+RKSPRVADESM+ GG DGG R    VVDG RR     GFSMIYS
Sbjct: 1   MWRL-AAAVRRNLHNIRKSPRVADESMYGGGVDGGGRVAAVVVDGDRREGNSYGFSMIYS 60

Query: 61  VLRTPFSILSCFSQPHVNGVDGMWVSGEFAGVSEVNHLMVRDSMRYAILM 103
           +LRTPFSILSCFSQPHVNGVDGMWVSGEF  +SEVNHLMV DSMRYAILM
Sbjct: 61  LLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 109

BLAST of Sed0026674 vs. NCBI nr
Match: XP_023554647.1 (uncharacterized protein LOC111811837 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 164.9 bits (416), Expect = 3.8e-37
Identity = 84/108 (77.78%), Postives = 94/108 (87.04%), Query Frame = 0

Query: 1   MWRLAAAAVRKNLHNMRKSPRVADESMHN--GGSDGGRRVVDGGRR----IGFSMIYSVL 60
           MWRL AAAVR+NLHN+RKSPRVADESM++  GG+DGG  V+DG RR     GFSMIY++L
Sbjct: 1   MWRL-AAAVRRNLHNIRKSPRVADESMYSAGGGADGGATVIDGNRRERNSYGFSMIYTLL 60

Query: 61  RTPFSILSCFSQPHVNGVDGMWVSGEFAGVSEVNHLMVRDSMRYAILM 103
           RTPFS+LSCFSQPHVNGVDGMWVSGEF  +SEVNHLMV DSMRYAILM
Sbjct: 61  RTPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 107

BLAST of Sed0026674 vs. NCBI nr
Match: XP_022969305.1 (uncharacterized protein LOC111468352 [Cucurbita maxima])

HSP 1 Score: 164.9 bits (416), Expect = 3.8e-37
Identity = 84/108 (77.78%), Postives = 94/108 (87.04%), Query Frame = 0

Query: 1   MWRLAAAAVRKNLHNMRKSPRVADESMHN--GGSDGGRRVVDGGRR----IGFSMIYSVL 60
           MWRL AAAVR+NLHN+RKSPRVADESM++  GG+DGG  V+DG RR     GFSMIY++L
Sbjct: 1   MWRL-AAAVRRNLHNIRKSPRVADESMYSAGGGADGGATVIDGNRREGNSYGFSMIYTLL 60

Query: 61  RTPFSILSCFSQPHVNGVDGMWVSGEFAGVSEVNHLMVRDSMRYAILM 103
           RTPFS+LSCFSQPHVNGVDGMWVSGEF  +SEVNHLMV DSMRYAILM
Sbjct: 61  RTPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 107

BLAST of Sed0026674 vs. ExPASy TrEMBL
Match: A0A5D3BTM8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold201G00140 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 6.3e-38
Identity = 88/110 (80.00%), Postives = 93/110 (84.55%), Query Frame = 0

Query: 1   MWRLAAAAVRKNLHNMRKSPRVADESMHNGGSDGGRR----VVDGGRR----IGFSMIYS 60
           MWRL AAAVR+NLHN+RKSPRVADESM+ GG DGG R    VVDG RR     GFSMIYS
Sbjct: 1   MWRL-AAAVRRNLHNIRKSPRVADESMYGGGVDGGGRVAAVVVDGDRREGNSYGFSMIYS 60

Query: 61  VLRTPFSILSCFSQPHVNGVDGMWVSGEFAGVSEVNHLMVRDSMRYAILM 103
           +LRTPFSILSCFSQPHVNGVDGMWVSGEF  +SEVNHLMV DSMRYAILM
Sbjct: 61  LLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 109

BLAST of Sed0026674 vs. ExPASy TrEMBL
Match: A0A6J1HZK3 (uncharacterized protein LOC111468352 OS=Cucurbita maxima OX=3661 GN=LOC111468352 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.8e-37
Identity = 84/108 (77.78%), Postives = 94/108 (87.04%), Query Frame = 0

Query: 1   MWRLAAAAVRKNLHNMRKSPRVADESMHN--GGSDGGRRVVDGGRR----IGFSMIYSVL 60
           MWRL AAAVR+NLHN+RKSPRVADESM++  GG+DGG  V+DG RR     GFSMIY++L
Sbjct: 1   MWRL-AAAVRRNLHNIRKSPRVADESMYSAGGGADGGATVIDGNRREGNSYGFSMIYTLL 60

Query: 61  RTPFSILSCFSQPHVNGVDGMWVSGEFAGVSEVNHLMVRDSMRYAILM 103
           RTPFS+LSCFSQPHVNGVDGMWVSGEF  +SEVNHLMV DSMRYAILM
Sbjct: 61  RTPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 107

BLAST of Sed0026674 vs. ExPASy TrEMBL
Match: A0A6J1ER34 (uncharacterized protein LOC111437033 OS=Cucurbita moschata OX=3662 GN=LOC111437033 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 4.5e-36
Identity = 85/108 (78.70%), Postives = 90/108 (83.33%), Query Frame = 0

Query: 1   MWRLAAAAVRKNLHNMRKSPRVADESMHNGGS-DGGRRVVDGGRR-----IGFSMIYSVL 60
           MWRL AAAVR  LHN+RKSPRVADESM +GG  DGG RVVDGGRR      G S+IY+VL
Sbjct: 1   MWRL-AAAVRSKLHNIRKSPRVADESMFSGGGVDGGGRVVDGGRRRERNSHGVSIIYNVL 60

Query: 61  RTPFSILSCFSQPHVNGVDGMWVSGEFAGVSEVNHLMVRDSMRYAILM 103
           RTPFS LSCFS PHVNGVDGMWVSGEFA +SEVNHLMV DSMRYAILM
Sbjct: 61  RTPFSFLSCFSHPHVNGVDGMWVSGEFARISEVNHLMVSDSMRYAILM 107

BLAST of Sed0026674 vs. ExPASy TrEMBL
Match: A0A6J1C6U0 (uncharacterized protein LOC111007908 OS=Momordica charantia OX=3673 GN=LOC111007908 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.1e-34
Identity = 80/107 (74.77%), Postives = 88/107 (82.24%), Query Frame = 0

Query: 1   MWRLAAAAVRKNLHNMRKSPRVADESMH-NGGSDGGRRVVD----GGRRIGFSMIYSVLR 60
           MWRL AA +R+NLHN+RKSPRVADESM+  GG DGG  V +    GG   GFSMIYSVLR
Sbjct: 1   MWRL-AAELRRNLHNIRKSPRVADESMYGGGGGDGGGIVAERDRRGGNSYGFSMIYSVLR 60

Query: 61  TPFSILSCFSQPHVNGVDGMWVSGEFAGVSEVNHLMVRDSMRYAILM 103
           TPFS+L CFSQPHVNG DG+WVSGEFA +SEVNHLMV DSMRYAILM
Sbjct: 61  TPFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMRYAILM 106

BLAST of Sed0026674 vs. ExPASy TrEMBL
Match: A0A1S3C134 (uncharacterized protein LOC103495667 OS=Cucumis melo OX=3656 GN=LOC103495667 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.8e-32
Identity = 78/99 (78.79%), Postives = 83/99 (83.84%), Query Frame = 0

Query: 1   MWRLAAAAVRKNLHNMRKSPRVADESMHNGGSDGGRR----VVDGGRR----IGFSMIYS 60
           MWRL AAAVR+NLHN+RKSPRVADESM+ GG DGG R    VVDG RR     GFSMIYS
Sbjct: 41  MWRL-AAAVRRNLHNIRKSPRVADESMYGGGVDGGGRVAAVVVDGDRREGNSYGFSMIYS 100

Query: 61  VLRTPFSILSCFSQPHVNGVDGMWVSGEFAGVSEVNHLM 92
           +LRTPFSILSCFSQPHVNGVDGMWVSGEF  +SEVNHLM
Sbjct: 101 LLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLM 138

BLAST of Sed0026674 vs. TAIR 10
Match: AT5G35732.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04795.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 112.1 bits (279), Expect = 2.7e-25
Identity = 55/97 (56.70%), Postives = 74/97 (76.29%), Query Frame = 0

Query: 7   AAVRKNLHNMRKSPRVADES-MHNGGSDGGRRVVDGGRRIGFSMIYSVLRTPFSILSCFS 66
           + +R+NL N+RKSPRVAD++ + +  S  G  VV  GRR GF+ +  ++R PFSI+SCF+
Sbjct: 6   SVLRRNLQNLRKSPRVADDTELPSSTSGAGPGVVANGRRDGFNSV--IMRFPFSIISCFA 65

Query: 67  QPHVNGVDGMWVSGEFAGVSEVNHLMVRDSMRYAILM 103
            P V+G DG+WVSG++  +SEVNHLMV DSMRYAILM
Sbjct: 66  VPRVSGTDGLWVSGDYGSISEVNHLMVSDSMRYAILM 100

BLAST of Sed0026674 vs. TAIR 10
Match: AT2G04795.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35732.1); Has 18 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 92.4 bits (228), Expect = 2.2e-19
Identity = 50/98 (51.02%), Postives = 63/98 (64.29%), Query Frame = 0

Query: 9   VRKNLHNMRKSPRVADE----SMHNGGSDGGRRVVDGGRRIGFSMIYSVLRTPFSILSCF 68
           +R+NL N+RKSPRVADE    S    G  GG    +GG          +++ P SI+SCF
Sbjct: 8   LRRNLQNLRKSPRVADESALPSTTVNGDHGGGNGSNGG----------IMKFPLSIMSCF 67

Query: 69  SQPHVNGVDGMWVSGEFAGVSEVNHLMVRDSMRYAILM 103
           S P V+  DG+WVSG++  VSEVNHLMV D MRYA+LM
Sbjct: 68  SVPRVSRADGVWVSGDYGRVSEVNHLMVCDGMRYALLM 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_031744820.19.9e-3880.73uncharacterized protein LOC101211016 [Cucumis sativus] >KAE8645720.1 hypothetica... [more]
KAG6572248.19.9e-3878.70hypothetical protein SDJN03_28976, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0059153.11.3e-3780.00uncharacterized protein E6C27_scaffold430G00710 [Cucumis melo var. makuwa] >TYK0... [more]
XP_023554647.13.8e-3777.78uncharacterized protein LOC111811837 [Cucurbita pepo subsp. pepo][more]
XP_022969305.13.8e-3777.78uncharacterized protein LOC111468352 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BTM86.3e-3880.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1HZK31.8e-3777.78uncharacterized protein LOC111468352 OS=Cucurbita maxima OX=3661 GN=LOC111468352... [more]
A0A6J1ER344.5e-3678.70uncharacterized protein LOC111437033 OS=Cucurbita moschata OX=3662 GN=LOC1114370... [more]
A0A6J1C6U01.1e-3474.77uncharacterized protein LOC111007908 OS=Momordica charantia OX=3673 GN=LOC111007... [more]
A0A1S3C1341.8e-3278.79uncharacterized protein LOC103495667 OS=Cucumis melo OX=3656 GN=LOC103495667 PE=... [more]
Match NameE-valueIdentityDescription
AT5G35732.12.7e-2556.70unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT2G04795.12.2e-1951.02unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR48165BNAC03G44900D PROTEINcoord: 1..102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0026674.1Sed0026674.1mRNA