Sed0026437 (gene) Chayote v1

Overview


Name	Sed0026437
Type	gene
Organism	Sechium edule (Chayote v1)
Description	multiple organellar RNA editing factor 8, chloroplastic/mitochondrial
Location	LG04: 30310542 .. 30312664 (+)
RNA-Seq Expression	Sed0026437
Synteny	Sed0026437

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCTCTTCTCCCGCACACTCCCCAGAACCCTAAGTTTGTCTTCCGCCATTCTCCGCCCCCTCGCCGCAACAGTCGCCGCCGAGTCCCGCCGCCTCTCTCCGGCGCCGACTGCGAGGGAGTTCGCCACCCGTGCCACTTCTTCGTCTCTGAGCGATCCCAATCCTAACTGGTCTAATCGCCCCCCCCAAGGAGACCATATTGCTTGATGGCTGTGATTTCGATGGCTCGTTGTAATGGAGGCGCCTGAGGGACAGCCCACCAGGGATGAGATCATCGACTCCTATATCAAAACGCTTGCCATGATTCTTGGAAGGTGAGCTTTTCCCCTACTCATTGCGTTTAGTTGTGTTTCTTTTTGTATGTTAGTGATTGTAATACGACATTTTTCATCTGGAAAATTTGTTCAGTTATGTCAATTGTCAATGTATCCTTTTAGCAAACTTATTATGGACTGTTTAGCCCTAAGGGATAGAATTTGAGGCATATGTTCAATTTGTTTGAATGAGTAGTTGGCTTTGATGTGGATTAGACGAGTGATTTTGAGATGATGAGTTATTTTAATCTAGTTATTATGTTGAGTGCTTGCAATAACTCGTTTGGATGTGGTTTTTTGAGGATGAATTGTAATGCTCATTTGTAACCCAATAAAACCAAAAATTGAACGTGCCCTTTTGTTCTATTTGTTCCCTTCACTTGAGTGTCTTTGTGATGAATGGTGTATTTCATTGTTACAGCGAGGAAGAAGCAAGGATGAAGATATACTCTGTTTCAACTAGATGCTACTTTGCATTTGGGTGTCTCGTTTCTGAAGAACTTTCTTACAAGATCAAAGGTTTATACCTTCAAGCCTTGTTTTCTTTTGTTTCCATGTGTTTGTTATCTCTTTCTCTTCTTTCGAGTTGAGTGTACTAATTTGTTTCTTTTGTTTCCTTCAAATTTTCTCAGAGCTGCCTAGGGTTCGTTGGGTCCTTCCTGATTCATACTTGGATGTTAAGAATAAAGATTATGGAGGTGATTCCCTTTTCTATTCACTTCAAAAAATTAGCTTGTTTACTCTTGTTTTTCATCTCCAAGGGTGGTGCGGTGGTCAAAGGCTTGGGTTTTTGAAGGCGTGCTTCCCTCAACGTCCCAGTTCGAGACTCACTTGTGACATTAATTTGTCGACACCTCCTATATCTCCATTCCTTCGTTGTCTCTTGGTGCCTGACCTAAGGATGGACGTGGTTACCCCGTGGAGCTAATCTTTCTGGACCGTTTAAGTTAATGGATCATTTCAAAGAAAGCTCTAATCTTAAATTGGAAAGCTCTAGTGTAACTTGTAGTGACTTTTCTTATCTTTTGGAAAATTCATTAAGGATAAAACTATTTTTCCATTTTGTATAGGAGTTGTTGTACATAACTATTTTATAATTTCTGCATATCTTTTTTACCTTTGGCAGGGGATCCTTTTATAAATGGCCAAGCTGTTCCATATGACAACAAGTCCCACGAGGAATGGATTAGAAACAATCAGAGATCTAAGGAGAAGGATTGGCGCAAGGATAGACCACGCAACCATCGTGACAGGCAGCAACAGTATATGCAAAACAGAGAAATCCCAAATGTTTCAGGACCAAACACGAATGGACCAACACCAAGTAATGTGCCTCCCAACAACTTTAGCAGCAACAGTATGCCACCACAGTGCAATGCTGGAATGCCCCAAGGCAACTATAGCGGACCACCGCCTCCATCACCGAACAACTTTAACGGACCATCGCCGCCATCTCCGCATCACTTTAACGGACCACTGCCACCGCCACCGAACAACTTTAACAGACCATTGCATCCACATCCACCACCAAACAACTTTAATGGACCGCAGGCTCCACCACCCTCGAACAACTTCAATGGACCTCCACCACGCAACTACGGACCACCACCACCATCATACAACTCCGGGCCAGTACCACCATACAACTTTGAAGGGCCACAACCAAACAACAATTGGGGAGCACCACCGCGGAACAACTATGGTGGACCTTCGAACTCCAGCGGGCCGCCTGCACAAAACAGCTATGGAGAGATGCAGCCTAATGGTGGTGGATGGGCTAGTAATGTGCATAACTATCAACGATAA

mRNA sequence

ATGGCGCTCTTCTCCCGCACACTCCCCAGAACCCTAAGTTTGTCTTCCGCCATTCTCCGCCCCCTCGCCGCAACAGTCGCCGCCGAGTCCCGCCGCCTCTCTCCGGCGCCGACTGCGAGGGAGTTCGCCACCCGTGCCACTTCTTCGTCTCTGAGCGATCCCAATCCTAACTGGTCTAATCGCCCCCCCCAAGGAGACCATATTGCGCCTGAGGGACAGCCCACCAGGGATGAGATCATCGACTCCTATATCAAAACGCTTGCCATGATTCTTGGAAGCGAGGAAGAAGCAAGGATGAAGATATACTCTGTTTCAACTAGATGCTACTTTGCATTTGGGTGTCTCGTTTCTGAAGAACTTTCTTACAAGATCAAAGAGCTGCCTAGGGTTCGTTGGGTCCTTCCTGATTCATACTTGGATGTTAAGAATAAAGATTATGGAGGGGATCCTTTTATAAATGGCCAAGCTGTTCCATATGACAACAAGTCCCACGAGGAATGGATTAGAAACAATCAGAGATCTAAGGAGAAGGATTGGCGCAAGGATAGACCACGCAACCATCGTGACAGGCAGCAACAGTATATGCAAAACAGAGAAATCCCAAATGTTTCAGGACCAAACACGAATGGACCAACACCAAGTAATGTGCCTCCCAACAACTTTAGCAGCAACAGTATGCCACCACAGTGCAATGCTGGAATGCCCCAAGGCAACTATAGCGGACCACCGCCTCCATCACCGAACAACTTTAACGGACCATCGCCGCCATCTCCGCATCACTTTAACGGACCACTGCCACCGCCACCGAACAACTTTAACAGACCATTGCATCCACATCCACCACCAAACAACTTTAATGGACCGCAGGCTCCACCACCCTCGAACAACTTCAATGGACCTCCACCACGCAACTACGGACCACCACCACCATCATACAACTCCGGGCCAGTACCACCATACAACTTTGAAGGGCCACAACCAAACAACAATTGGGGAGCACCACCGCGGAACAACTATGGTGGACCTTCGAACTCCAGCGGGCCGCCTGCACAAAACAGCTATGGAGAGATGCAGCCTAATGGTGGTGGATGGGCTAGTAATGTGCATAACTATCAACGATAA

Coding sequence (CDS)

ATGGCGCTCTTCTCCCGCACACTCCCCAGAACCCTAAGTTTGTCTTCCGCCATTCTCCGCCCCCTCGCCGCAACAGTCGCCGCCGAGTCCCGCCGCCTCTCTCCGGCGCCGACTGCGAGGGAGTTCGCCACCCGTGCCACTTCTTCGTCTCTGAGCGATCCCAATCCTAACTGGTCTAATCGCCCCCCCCAAGGAGACCATATTGCGCCTGAGGGACAGCCCACCAGGGATGAGATCATCGACTCCTATATCAAAACGCTTGCCATGATTCTTGGAAGCGAGGAAGAAGCAAGGATGAAGATATACTCTGTTTCAACTAGATGCTACTTTGCATTTGGGTGTCTCGTTTCTGAAGAACTTTCTTACAAGATCAAAGAGCTGCCTAGGGTTCGTTGGGTCCTTCCTGATTCATACTTGGATGTTAAGAATAAAGATTATGGAGGGGATCCTTTTATAAATGGCCAAGCTGTTCCATATGACAACAAGTCCCACGAGGAATGGATTAGAAACAATCAGAGATCTAAGGAGAAGGATTGGCGCAAGGATAGACCACGCAACCATCGTGACAGGCAGCAACAGTATATGCAAAACAGAGAAATCCCAAATGTTTCAGGACCAAACACGAATGGACCAACACCAAGTAATGTGCCTCCCAACAACTTTAGCAGCAACAGTATGCCACCACAGTGCAATGCTGGAATGCCCCAAGGCAACTATAGCGGACCACCGCCTCCATCACCGAACAACTTTAACGGACCATCGCCGCCATCTCCGCATCACTTTAACGGACCACTGCCACCGCCACCGAACAACTTTAACAGACCATTGCATCCACATCCACCACCAAACAACTTTAATGGACCGCAGGCTCCACCACCCTCGAACAACTTCAATGGACCTCCACCACGCAACTACGGACCACCACCACCATCATACAACTCCGGGCCAGTACCACCATACAACTTTGAAGGGCCACAACCAAACAACAATTGGGGAGCACCACCGCGGAACAACTATGGTGGACCTTCGAACTCCAGCGGGCCGCCTGCACAAAACAGCTATGGAGAGATGCAGCCTAATGGTGGTGGATGGGCTAGTAATGTGCATAACTATCAACGATAA

Protein sequence

MALFSRTLPRTLSLSSAILRPLAATVAAESRRLSPAPTAREFATRATSSSLSDPNPNWSNRPPQGDHIAPEGQPTRDEIIDSYIKTLAMILGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPRVRWVLPDSYLDVKNKDYGGDPFINGQAVPYDNKSHEEWIRNNQRSKEKDWRKDRPRNHRDRQQQYMQNREIPNVSGPNTNGPTPSNVPPNNFSSNSMPPQCNAGMPQGNYSGPPPPSPNNFNGPSPPSPHHFNGPLPPPPNNFNRPLHPHPPPNNFNGPQAPPPSNNFNGPPPRNYGPPPPSYNSGPVPPYNFEGPQPNNNWGAPPRNNYGGPSNSSGPPAQNSYGEMQPNGGGWASNVHNYQR

Homology

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BLAST of Sed0026437 vs. NCBI nr
Match: XP_023552822.1 (multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 455.7 bits (1171), Expect = 3.9e-124
Identity = 268/421 (63.66%), Postives = 303/421 (71.97%), Query Frame = 0


Query: 3   LFSRTLPRTLSLSSAI-------------------------LRPLAATVAAESRRLSPAP 62
           LFSR+LP+TL L+S                           LRPL A V A+ R +SPAP
Sbjct: 5   LFSRSLPKTLILTSMFSRSFLTANRAAISASSCSSSSLLRYLRPLTAIVGADFRSVSPAP 64

Query: 63  TAREFATRATSSSLSDPNPNWSNRPPQGDHI--------------APEGQPTRDEIIDSY 122
           + REFATRATSSSL+DPNPNWSNRPP+   +               PEG PTRDEIIDSY
Sbjct: 65  SVREFATRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEIIDSY 124

Query: 123 IKTLAMILGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPRVRWVLPDSYLDVKN 182
           IKTLAM++GSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELP+VRWVLPDSYLDVKN
Sbjct: 125 IKTLAMVIGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYLDVKN 184

Query: 183 KDYGGDPFINGQAVPYDNKSHEEWIRNNQRSKEKDWRKDRPRN-----HRDRQQQYMQNR 242
           KDYGG+PFINGQAVPYD K HEEWIRNN R+ E++ R DRPRN     + +R+++ MQ+R
Sbjct: 185 KDYGGEPFINGQAVPYDPKYHEEWIRNNARANERNKRNDRPRNFDRSRNFERRRENMQSR 244

Query: 243 EIPNVS-----GPNTNGPTPSNVPPNNFSSNSMPPQCNAGMPQGNYS-GPPPPSPNNFNG 302
           E PN S     GPN + P PSN+PPNNF++  MPPQ   GMPQGNY+ GPPPP PNNF+G
Sbjct: 245 EFPNASPNQPTGPNMSPPAPSNMPPNNFNA-GMPPQNRGGMPQGNYAGGPPPPPPNNFSG 304

Query: 303 PSPPSPHHFNGPLPPPPNNFNRPLHPHPPPNNFNGPQAPPPSNNFNGPPPRNYGPPPPSY 362
           P PP PH+F+GP PPP N    P  P PPPNNF GP  PPP NN+ G PPRNY  PPP  
Sbjct: 305 P-PPPPHNFSGPPPPPHNYAGGP--PPPPPNNFGGP-PPPPLNNYAGQPPRNYASPPPPP 364

Query: 363 NSGPVPPYNFEGPQPNNNWGAPPRNNYGGPSNSSGPPAQNSY-GEMQPNGGGWASNVHNY 373
           +SG  PP+N+ GPQ NN WG PP NNYGGPSNS GPP QNSY G  QPN GGW+SNVHN 
Sbjct: 365 HSGAPPPHNYGGPQANNYWGGPPPNNYGGPSNSGGPPPQNSYGGGGQPNAGGWSSNVHNK 420

[Close]

BLAST of Sed0026437 vs. NCBI nr
Match: XP_022984463.1 (multiple organellar RNA editing factor 8, chloroplastic/mitochondrial isoform X1 [Cucurbita maxima])

HSP 1 Score: 446.4 bits (1147), Expect = 2.4e-121
Identity = 270/440 (61.36%), Postives = 307/440 (69.77%), Query Frame = 0


Query: 3   LFSRTLPRTLSLSSAI-------------------------LRPLAATVAAESRRLSPAP 62
           LFSR+ P+TL L+S                           LRPL A V A+ R +SPA 
Sbjct: 5   LFSRSFPKTLILTSMFSRSFLTANRAAISASSCSSSSLLRYLRPLTAIVGADFRSVSPAS 64

Query: 63  TAREFATRATSSSLSDPNPNWSNRPPQGDHI--------------APEGQPTRDEIIDSY 122
           + REFATRATSSSL+DPNPNWSNRPP+   +               PEG PTRDEIIDSY
Sbjct: 65  SVREFATRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEIIDSY 124

Query: 123 IKTLAMILGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPRVRWVLPDSYLDVKN 182
           IKTLAM++GSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELP+VRWVLPDSYLDVKN
Sbjct: 125 IKTLAMVIGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYLDVKN 184

Query: 183 KDYGGDPFINGQAVPYDNKSHEEWIRNNQRSKEKDWRKDRPRN-----HRDRQQQYMQNR 242
           KDYGG+PFINGQAVPYD K HEEWIRNN R+ E++ R DRPRN     + +R+++ MQ+R
Sbjct: 185 KDYGGEPFINGQAVPYDPKYHEEWIRNNARANERNKRNDRPRNFDRSRNFERRRENMQSR 244

Query: 243 EIPNVS-----GPNTNGPTPSNVPPNNFSSNSMPPQCNAGMPQGNYS-GPPPPSPNNFNG 302
           E PN S     GPN + P PSN+PPNNF++  MPPQ   GMPQGNY+ GPPPP PNNF+G
Sbjct: 245 EFPNASPNQPTGPNMSPPAPSNMPPNNFNA-GMPPQNRGGMPQGNYAGGPPPPPPNNFSG 304

Query: 303 P---------SPPSPHHFNGPLPPPPNNFNRPL---------HPHPPPNNFNGPQAPPPS 362
           P          PP P++F+GP PPPPNNF+ P           P PPPNNF GP  PPP 
Sbjct: 305 PPPPPNNFSGPPPPPNNFSGP-PPPPNNFSGPPPPPHNYAGGPPPPPPNNFGGP-PPPPL 364

Query: 363 NNFNGPPPRNYGPPPPSYNSGPVPPYNFEGPQPNNNWGA-PPRNNYGGPSNSSGPPAQNS 373
           NN+ G PPRNY PPPP + SG  PP+N+ GPQPNN WG  PP NNYGGPSNS GPP QNS
Sbjct: 365 NNYAGQPPRNYAPPPPPH-SGAAPPHNYGGPQPNNYWGGPPPTNNYGGPSNSGGPPPQNS 424

[Close]

BLAST of Sed0026437 vs. NCBI nr
Match: KAG7015044.1 (Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 443.0 bits (1138), Expect = 2.6e-120
Identity = 261/421 (62.00%), Postives = 298/421 (70.78%), Query Frame = 0


Query: 3   LFSRTLPRTLSLSSAI-------------------------LRPLAATVAAESRRLSPAP 62
           LFSR+LP+TL L+S                           LRPL A V A+ R +SPAP
Sbjct: 5   LFSRSLPKTLILTSMFSRSFLTANRAAISASSCSSSSLLRYLRPLTAIVGADFRSVSPAP 64

Query: 63  TAREFATRATSSSLSDPNPNWSNRPPQGDHI--------------APEGQPTRDEIIDSY 122
           + REFATRATSSSL+DPNPNWSNRPP+   +               PEG PTRDEIIDSY
Sbjct: 65  SVREFATRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEIIDSY 124

Query: 123 IKTLAMILGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPRVRWVLPDSYLDVKN 182
           IKTLAM++GSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELP+VRWVLPDSYLDVKN
Sbjct: 125 IKTLAMVIGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYLDVKN 184

Query: 183 KDYGGDPFINGQAVPYDNKSHEEWIRNNQRSKEKDWRKDRPRN-----HRDRQQQYMQNR 242
           KDYGG+PFINGQAVPYD K HEEWIRNN R+ E++ R DRPRN     + +R+++ MQ+R
Sbjct: 185 KDYGGEPFINGQAVPYDPKYHEEWIRNNARANERNKRNDRPRNFDRSRNFERRRENMQSR 244

Query: 243 EIPNVS-----GPNTNGPTPSNVPPNNFSSNSMPPQCNAGMPQGNYS-GPPPPSPNNFNG 302
           E PN S     GPN + P PSN+PPNNF++  MPPQ   GMPQGNY+ GPPPP PNNF+G
Sbjct: 245 EFPNASPNQPTGPNMSPPAPSNMPPNNFNA-GMPPQNRGGMPQGNYAGGPPPPPPNNFSG 304

Query: 303 PSPPSPHHFNGPLPPPPNNFNRPLHPHPPPNNFNGPQAPPPSNNFNGPPPRNYGPPPPSY 362
             PP PH++ G  PP            PPPNNF GP  PPP NN+ G PPRNY PPPP +
Sbjct: 305 --PPPPHNYAGGPPP------------PPPNNFGGP-PPPPLNNYAGQPPRNYAPPPPPH 364

Query: 363 NSGPVPPYNFEGPQPNNNWGAPPRNNYGGPSNSSGPPAQNSY-GEMQPNGGGWASNVHNY 373
            SGP PP+N+ GPQPNN WG PP NNYGGPS+S GPP  N+Y G  QPN GGW+SNVHN 
Sbjct: 365 -SGPAPPHNYGGPQPNNYWGGPPPNNYGGPSHSGGPPPHNNYGGGGQPNVGGWSSNVHNK 408

[Close]

BLAST of Sed0026437 vs. NCBI nr
Match: KAG6577022.1 (Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 442.2 bits (1136), Expect = 4.5e-120
Identity = 261/421 (62.00%), Postives = 298/421 (70.78%), Query Frame = 0


Query: 3   LFSRTLPRTLSLSSAI-------------------------LRPLAATVAAESRRLSPAP 62
           LFSR+LP+TL L+S                           LRPL A V A+ R +SPAP
Sbjct: 5   LFSRSLPKTLILTSMFSRSFLTANRAAISASSCSSSSLLRYLRPLTAIVGADFRSVSPAP 64

Query: 63  TAREFATRATSSSLSDPNPNWSNRPPQGDHI--------------APEGQPTRDEIIDSY 122
           + REFATRATSSSL+DPNPNWSNRPP+   +               PEG PTRDEIIDSY
Sbjct: 65  SVREFATRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEIIDSY 124

Query: 123 IKTLAMILGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPRVRWVLPDSYLDVKN 182
           IKTLAM++GSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELP+VRWVLPDSYLDVKN
Sbjct: 125 IKTLAMVIGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYLDVKN 184

Query: 183 KDYGGDPFINGQAVPYDNKSHEEWIRNNQRSKEKDWRKDRPRN-----HRDRQQQYMQNR 242
           KDYGG+PFINGQAVPYD K HEEWIRNN R+ E++ R DRPRN     + +R+++ MQ+R
Sbjct: 185 KDYGGEPFINGQAVPYDPKYHEEWIRNNARANERNKRNDRPRNFDRSRNFERRRENMQSR 244

Query: 243 EIPNVS-----GPNTNGPTPSNVPPNNFSSNSMPPQCNAGMPQGNYS-GPPPPSPNNFNG 302
           E PN S     GPN + P PSN+PPNNF++  MPPQ   GMPQGNY+ GPPPP PNNF+G
Sbjct: 245 EFPNASPNQPTGPNMSPPAPSNMPPNNFNA-GMPPQNRGGMPQGNYAGGPPPPPPNNFSG 304

Query: 303 PSPPSPHHFNGPLPPPPNNFNRPLHPHPPPNNFNGPQAPPPSNNFNGPPPRNYGPPPPSY 362
             PP PH++ G  PP            PPPNNF GP  PPP NN+ G PPRNY PPPP  
Sbjct: 305 --PPPPHNYAGGPPP------------PPPNNFGGP-PPPPLNNYAGQPPRNYAPPPP-- 364

Query: 363 NSGPVPPYNFEGPQPNNNWGAPPRNNYGGPSNSSGPPAQNSY-GEMQPNGGGWASNVHNY 373
           +SGP PP+N+ GPQPNN WG PP NNYGGPS+S GPP  N+Y G  QPN GGW+SNVHN 
Sbjct: 365 HSGPAPPHNYGGPQPNNYWGGPPPNNYGGPSHSGGPPPHNNYGGGGQPNVGGWSSNVHNK 407

[Close]

BLAST of Sed0026437 vs. NCBI nr
Match: XP_022922870.1 (multiple organellar RNA editing factor 8, chloroplastic/mitochondrial isoform X1 [Cucurbita moschata])

HSP 1 Score: 441.0 bits (1133), Expect = 9.9e-120
Identity = 262/425 (61.65%), Postives = 299/425 (70.35%), Query Frame = 0


Query: 3   LFSRTLPRTLSLSSAI-------------------------LRPLAATVAAESRRLSPAP 62
           LFSR+LP+TL L+S                           LRPL A V A+ R +SPAP
Sbjct: 5   LFSRSLPKTLILTSMFSRSFLTANRAAISASSCSSSSLLRYLRPLTAIVGADFRSVSPAP 64

Query: 63  TAREFATRATSSSLSDPNPNWSNRPPQGDHI--------------APEGQPTRDEIIDSY 122
           + REFATRATSSSL+DPNPNWSNRPP+   +               PEG PTRDEIIDSY
Sbjct: 65  SVREFATRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEIIDSY 124

Query: 123 IKTLAMILGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPRVRWVLPDSYLDVKN 182
           IKTLAM++GSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELP+VRWVLPDSYLDVKN
Sbjct: 125 IKTLAMVIGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYLDVKN 184

Query: 183 KDYGGDPFINGQAVPYDNKSHEEWIRNNQRSKEKDWRKDRPRN-----HRDRQQQYMQNR 242
           KDYGG+PFINGQAVPYD K HEEWIRNN R+ E++ R DRPRN     + +R+++ MQ+R
Sbjct: 185 KDYGGEPFINGQAVPYDPKYHEEWIRNNARANERNKRNDRPRNFDRSRNFERRRENMQSR 244

Query: 243 EIPNVS-----GPNTNGPTPSNVPPNNFSSNSMPPQCNAGMPQGNYS-GPPPPSPNNFNG 302
           E PN S     GPN + P PSN+PPNNF++  M PQ   GMPQGNY+ GPPPP PNNF+G
Sbjct: 245 EFPNASPNQPTGPNMSPPAPSNMPPNNFNA-GMSPQNRGGMPQGNYAGGPPPPPPNNFSG 304

Query: 303 PSPPSPHHFNGPLPPPPNNFNRPLHPHPPPNNFNGPQAPPPSNNFNGPPPRNYG----PP 362
           P PP PH++ G  PP            PPPNNF GP  PPP NN+ G PPRNY     PP
Sbjct: 305 P-PPPPHNYAGGPPP------------PPPNNFGGP-PPPPLNNYAGQPPRNYAPPPPPP 364

Query: 363 PPSYNSGPVPPYNFEGPQPNNNWGAPPRNNYGGPSNSSGPPAQNSY-GEMQPNGGGWASN 373
           PP  +SGP PP+N+ GPQPNN WG PP NNYGGPS+S GPP QN+Y G  QPN GGW+SN
Sbjct: 365 PPPPHSGPAPPHNYGGPQPNNYWGGPPPNNYGGPSHSGGPPPQNNYGGGGQPNVGGWSSN 414

[Close]

BLAST of Sed0026437 vs. ExPASy Swiss-Prot
Match: Q9LKA5 (Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MORF8 PE=1 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 7.5e-70
Identity = 188/381 (49.34%), Postives = 231/381 (60.63%), Query Frame = 0


Query: 4   FSRTLPRTLSLSSAIL---RPLAATVAAESRRLSPAPTAREFATRATSSSLSDPNPNWSN 63
           F+ + P   S +S++L   RPL A  ++  R      + +  +T+ATSSSL+DPNPNWSN
Sbjct: 26  FASSAPLAKSPASSLLSRSRPLVAAFSSVFR--GGLVSVKGLSTQATSSSLNDPNPNWSN 85

Query: 64  RPPQGDHI--------------APEGQPTRDEIIDSYIKTLAMILGSEEEARMKIYSVST 123
           RPP+   +               P+G+PTRDEIIDSYIKTLA I+GSE+EARMKIYSVST
Sbjct: 86  RPPKETILLDGCDFEHWLVVVEPPQGEPTRDEIIDSYIKTLAQIVGSEDEARMKIYSVST 145

Query: 124 RCYFAFGCLVSEELSYKIKELPRVRWVLPDSYLDVKNKDYGGDPFINGQAVPYDNKSHEE 183
           RCY+AFG LVSE+LS+K+KEL  VRWVLPDSYLDV+NKDYGG+PFI+G+AVPYD K HEE
Sbjct: 146 RCYYAFGALVSEDLSHKLKELSNVRWVLPDSYLDVRNKDYGGEPFIDGKAVPYDPKYHEE 205

Query: 184 WIRNNQRSKEKDWRKDRPRNHRDRQQQYMQNREIPNVSGPNTNGPTPSNVPPNNFSSNSM 243
           WIRNN R+ E++ R DRPRN+ DR + + + RE  N++G    GP P   P         
Sbjct: 206 WIRNNARANERNRRNDRPRNN-DRSRNFERRRE--NMAG----GPPPQRPP-----MGGP 265

Query: 244 PPQCNAGMPQGNYSGPPPPSPNNFNGPSPPSPHHFNGPLPPPPNNFNRPLHP----HPPP 303
           PP      P    S PPPP   +  G +PP PH      PPPPNN   P HP     PP 
Sbjct: 266 PPP-----PHIGGSAPPPP---HMGGSAPPPPHMGQNYGPPPPNNMGGPRHPPPYGAPPQ 325

Query: 304 NNFNGPQAPPPSNNFNGPPPRNYGPPPPSYNSGPVPPYNFEGPQPNNNWGAPPRNNYGGP 363
           NN  GP+   P  N+ G PP NYG  PP+ N G  PP N+ G  P   +GA P   YGG 
Sbjct: 326 NNMGGPR---PPQNYGGTPPPNYGGAPPANNMGGAPPPNYGGGPP-PQYGAVPPPQYGG- 372

[Close]

BLAST of Sed0026437 vs. ExPASy Swiss-Prot
Match: Q84JZ6 (Multiple organellar RNA editing factor 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MORF3 PE=1 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.0e-30
Identity = 95/231 (41.13%), Postives = 127/231 (54.98%), Query Frame = 0


Query: 4   FSRTLPRTLSLSSAILRPLAATVAAESRRLSPAPTAREFATRATS-SSLSDPNPNWSNRP 63
           +S + P TLS  S    PL   V++    L P   +    T  +  S L+DP+PNWSNRP
Sbjct: 24  YSSSFP-TLSSRSRFAMPLIEKVSSSRTSLGPCYISTRPKTSGSGYSPLNDPSPNWSNRP 83

Query: 64  PQGDHIAPEG---------------QPTRDEIIDSYIKTLAMILGSEEEARMKIYSVSTR 123
           P+ + I  +G               +PT +E+I+SY+KTL  +LG EEEA+ KIYSV T 
Sbjct: 84  PK-ETILLDGCDYEHWLIVMEFTDPKPTEEEMINSYVKTLTSVLGCEEEAKKKIYSVCTS 143

Query: 124 CYFAFGCLVSEELSYKIKELPRVRWVLPDSYLDVKNKDYGGDPFINGQAVPYDNKSHEEW 183
            Y  FG L+SEELS K+K LP V WVLPDSYLDV NKDYGGD ++ G+ +P         
Sbjct: 144 TYTGFGALISEELSCKVKALPGVLWVLPDSYLDVPNKDYGGDLYVEGKVIP--------- 203

Query: 184 IRNNQRSKEKDWRKDRPRNHRDRQQQYMQ-NREIPNVSGPNTNGPTPSNVP 218
            R   R  E+   + RPR   DR+++ MQ  R  P++   +   P   N P
Sbjct: 204 -RPQYRFTEQRHTRPRPRPRYDRRRETMQVERREPSMGLHSPVNPGEFNKP 242

[Close]

BLAST of Sed0026437 vs. ExPASy Swiss-Prot
Match: Q9CAH0 (Multiple organellar RNA editing factor 7, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MORF7 PE=1 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.4e-28
Identity = 72/170 (42.35%), Postives = 102/170 (60.00%), Query Frame = 0


Query: 14  LSSAILRPLAATVAAESRRLSPAPTAREFATRATSSSLSDPNPNWSN--RPP---QGDHI 73
           ++  I RPL  T A   R    +P +        S S++    +WS   R P   +G   
Sbjct: 1   MARIIRRPLNLTAAVRFRLSPLSPFS------GNSGSINSETTSWSELIRVPSLVEGCDY 60

Query: 74  --------APEGQPTRDEIIDSYIKTLAMILGSEEEARMKIYSVSTRCYFAFGCLVSEEL 133
                    P G PTR+ I+ S+++TLAM LGSEEEA+  IYSVST+ Y+AFGC + E L
Sbjct: 61  KHWLVLMKPPNGYPTRNHIVQSFVETLAMALGSEEEAKRSIYSVSTKYYYAFGCRIHEPL 120

Query: 134 SYKIKELPRVRWVLPDSYLDVKNKDYGGDPFINGQAVPYDNKSHEEWIRN 171
           +YKI+ LP V+WVLPDS++   +  YGG+PF++G+ VPYD K H +W+R+
Sbjct: 121 TYKIRSLPDVKWVLPDSFIVDGDNRYGGEPFVDGEVVPYDEKYHADWLRD 164

[Close]

BLAST of Sed0026437 vs. ExPASy Swiss-Prot
Match: Q9LPZ1 (Multiple organellar RNA editing factor 9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MORF9 PE=1 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.4e-23
Identity = 70/183 (38.25%), Postives = 99/183 (54.10%), Query Frame = 0


Query: 31  RRLSPAPTAREFATRATSSSLSDPNPNWSNRPPQGDHIAPEG----------------QP 90
           R +S A + R  A    ++  SD +   SN   Q + I   G                 P
Sbjct: 43  RNISTAGSRRRVAIVKAATVDSDYSSKRSNSNEQRETIMLPGCDYNHWLIVMEFPKDPAP 102

Query: 91  TRDEIIDSYIKTLAMILGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPRVRWVL 150
           +RD++ID+Y+ TLA +LGS EEA+  +Y+ ST  Y  F C + EE S K K LP V WVL
Sbjct: 103 SRDQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTIDEETSEKFKGLPGVLWVL 162

Query: 151 PDSYLDVKNKDYGGDPFINGQAVPYDNKSHEEWIRNNQRSKEKDWRKDR-----PRNHRD 193
           PDSY+DVKNKDYGGD +ING+ +P    +++   RNN + + K + + R     P   + 
Sbjct: 163 PDSYIDVKNKDYGGDKYINGEIIPCTYPTYQPKQRNNTKYQSKRYERKRDGPPPPEQRKP 222

[Close]

BLAST of Sed0026437 vs. ExPASy Swiss-Prot
Match: Q38732 (DAG protein, chloroplastic OS=Antirrhinum majus OX=4151 GN=DAG PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 7.6e-22
Identity = 76/214 (35.51%), Postives = 112/214 (52.34%), Query Frame = 0


Query: 8   LPRTLSLSSAILRPLAATVAAESRRLSPA----PTAREFATRATSSSLSD------PNPN 67
           LP+TL+ +S  L PL + ++  S    P     P     A   T  +L+D       N N
Sbjct: 9   LPKTLTPNSKTLAPLLSILSTSSLSFLPCTRPHPIKSRSAAYPTVRALTDGEYSSRRNNN 68

Query: 68  WSNRPPQGDHIAPEG----------------QPTRDEIIDSYIKTLAMILGSEEEARMKI 127
            +N   + + I   G                 PTR+++ID+Y+ TLA +LGS EEA+  +
Sbjct: 69  NNNSGEERETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNM 128

Query: 128 YSVSTRCYFAFGCLVSEELSYKIKELPRVRWVLPDSYLDVKNKDYGGDPFINGQAVPYDN 187
           Y+ ST  Y  F C V+EE S K K LP V WVLPDSY+DVKNKDYGGD ++NG+ +P   
Sbjct: 129 YAFSTTTYTGFQCTVTEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCQY 188

Query: 188 KSHEEWIRNNQRSKEKDW--RKDRPRNHRDRQQQ 194
            +++     + + K K +  ++D P   + R +Q
Sbjct: 189 PTYQPKQSRSSKYKSKAYVRQRDGPPAEQRRPKQ 222

[Close]

BLAST of Sed0026437 vs. ExPASy TrEMBL
Match: A0A6J1JAJ8 (multiple organellar RNA editing factor 8, chloroplastic/mitochondrial isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482761 PE=4 SV=1)

HSP 1 Score: 446.4 bits (1147), Expect = 1.1e-121
Identity = 270/440 (61.36%), Postives = 307/440 (69.77%), Query Frame = 0


Query: 3   LFSRTLPRTLSLSSAI-------------------------LRPLAATVAAESRRLSPAP 62
           LFSR+ P+TL L+S                           LRPL A V A+ R +SPA 
Sbjct: 5   LFSRSFPKTLILTSMFSRSFLTANRAAISASSCSSSSLLRYLRPLTAIVGADFRSVSPAS 64

Query: 63  TAREFATRATSSSLSDPNPNWSNRPPQGDHI--------------APEGQPTRDEIIDSY 122
           + REFATRATSSSL+DPNPNWSNRPP+   +               PEG PTRDEIIDSY
Sbjct: 65  SVREFATRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEIIDSY 124

Query: 123 IKTLAMILGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPRVRWVLPDSYLDVKN 182
           IKTLAM++GSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELP+VRWVLPDSYLDVKN
Sbjct: 125 IKTLAMVIGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYLDVKN 184

Query: 183 KDYGGDPFINGQAVPYDNKSHEEWIRNNQRSKEKDWRKDRPRN-----HRDRQQQYMQNR 242
           KDYGG+PFINGQAVPYD K HEEWIRNN R+ E++ R DRPRN     + +R+++ MQ+R
Sbjct: 185 KDYGGEPFINGQAVPYDPKYHEEWIRNNARANERNKRNDRPRNFDRSRNFERRRENMQSR 244

Query: 243 EIPNVS-----GPNTNGPTPSNVPPNNFSSNSMPPQCNAGMPQGNYS-GPPPPSPNNFNG 302
           E PN S     GPN + P PSN+PPNNF++  MPPQ   GMPQGNY+ GPPPP PNNF+G
Sbjct: 245 EFPNASPNQPTGPNMSPPAPSNMPPNNFNA-GMPPQNRGGMPQGNYAGGPPPPPPNNFSG 304

Query: 303 P---------SPPSPHHFNGPLPPPPNNFNRPL---------HPHPPPNNFNGPQAPPPS 362
           P          PP P++F+GP PPPPNNF+ P           P PPPNNF GP  PPP 
Sbjct: 305 PPPPPNNFSGPPPPPNNFSGP-PPPPNNFSGPPPPPHNYAGGPPPPPPNNFGGP-PPPPL 364

Query: 363 NNFNGPPPRNYGPPPPSYNSGPVPPYNFEGPQPNNNWGA-PPRNNYGGPSNSSGPPAQNS 373
           NN+ G PPRNY PPPP + SG  PP+N+ GPQPNN WG  PP NNYGGPSNS GPP QNS
Sbjct: 365 NNYAGQPPRNYAPPPPPH-SGAAPPHNYGGPQPNNYWGGPPPTNNYGGPSNSGGPPPQNS 424

[Close]

BLAST of Sed0026437 vs. ExPASy TrEMBL
Match: A0A6J1EA12 (multiple organellar RNA editing factor 8, chloroplastic/mitochondrial isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430715 PE=4 SV=1)

HSP 1 Score: 441.0 bits (1133), Expect = 4.8e-120
Identity = 262/425 (61.65%), Postives = 299/425 (70.35%), Query Frame = 0


Query: 3   LFSRTLPRTLSLSSAI-------------------------LRPLAATVAAESRRLSPAP 62
           LFSR+LP+TL L+S                           LRPL A V A+ R +SPAP
Sbjct: 5   LFSRSLPKTLILTSMFSRSFLTANRAAISASSCSSSSLLRYLRPLTAIVGADFRSVSPAP 64

Query: 63  TAREFATRATSSSLSDPNPNWSNRPPQGDHI--------------APEGQPTRDEIIDSY 122
           + REFATRATSSSL+DPNPNWSNRPP+   +               PEG PTRDEIIDSY
Sbjct: 65  SVREFATRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEIIDSY 124

Query: 123 IKTLAMILGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPRVRWVLPDSYLDVKN 182
           IKTLAM++GSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELP+VRWVLPDSYLDVKN
Sbjct: 125 IKTLAMVIGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYLDVKN 184

Query: 183 KDYGGDPFINGQAVPYDNKSHEEWIRNNQRSKEKDWRKDRPRN-----HRDRQQQYMQNR 242
           KDYGG+PFINGQAVPYD K HEEWIRNN R+ E++ R DRPRN     + +R+++ MQ+R
Sbjct: 185 KDYGGEPFINGQAVPYDPKYHEEWIRNNARANERNKRNDRPRNFDRSRNFERRRENMQSR 244

Query: 243 EIPNVS-----GPNTNGPTPSNVPPNNFSSNSMPPQCNAGMPQGNYS-GPPPPSPNNFNG 302
           E PN S     GPN + P PSN+PPNNF++  M PQ   GMPQGNY+ GPPPP PNNF+G
Sbjct: 245 EFPNASPNQPTGPNMSPPAPSNMPPNNFNA-GMSPQNRGGMPQGNYAGGPPPPPPNNFSG 304

Query: 303 PSPPSPHHFNGPLPPPPNNFNRPLHPHPPPNNFNGPQAPPPSNNFNGPPPRNYG----PP 362
           P PP PH++ G  PP            PPPNNF GP  PPP NN+ G PPRNY     PP
Sbjct: 305 P-PPPPHNYAGGPPP------------PPPNNFGGP-PPPPLNNYAGQPPRNYAPPPPPP 364

Query: 363 PPSYNSGPVPPYNFEGPQPNNNWGAPPRNNYGGPSNSSGPPAQNSY-GEMQPNGGGWASN 373
           PP  +SGP PP+N+ GPQPNN WG PP NNYGGPS+S GPP QN+Y G  QPN GGW+SN
Sbjct: 365 PPPPHSGPAPPHNYGGPQPNNYWGGPPPNNYGGPSHSGGPPPQNNYGGGGQPNVGGWSSN 414

[Close]

BLAST of Sed0026437 vs. ExPASy TrEMBL
Match: A0A6J1JAK6 (multiple organellar RNA editing factor 8, chloroplastic/mitochondrial isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482761 PE=4 SV=1)

HSP 1 Score: 439.5 bits (1129), Expect = 1.4e-119
Identity = 262/422 (62.09%), Postives = 297/422 (70.38%), Query Frame = 0


Query: 3   LFSRTLPRTLSLSSAI-------------------------LRPLAATVAAESRRLSPAP 62
           LFSR+ P+TL L+S                           LRPL A V A+ R +SPA 
Sbjct: 5   LFSRSFPKTLILTSMFSRSFLTANRAAISASSCSSSSLLRYLRPLTAIVGADFRSVSPAS 64

Query: 63  TAREFATRATSSSLSDPNPNWSNRPPQGDHI--------------APEGQPTRDEIIDSY 122
           + REFATRATSSSL+DPNPNWSNRPP+   +               PEG PTRDEIIDSY
Sbjct: 65  SVREFATRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEIIDSY 124

Query: 123 IKTLAMILGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPRVRWVLPDSYLDVKN 182
           IKTLAM++GSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELP+VRWVLPDSYLDVKN
Sbjct: 125 IKTLAMVIGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYLDVKN 184

Query: 183 KDYGGDPFINGQAVPYDNKSHEEWIRNNQRSKEKDWRKDRPRN-----HRDRQQQYMQNR 242
           KDYGG+PFINGQAVPYD K HEEWIRNN R+ E++ R DRPRN     + +R+++ MQ+R
Sbjct: 185 KDYGGEPFINGQAVPYDPKYHEEWIRNNARANERNKRNDRPRNFDRSRNFERRRENMQSR 244

Query: 243 EIPNVS-----GPNTNGPTPSNVPPNNFSSNSMPPQCNAGMPQGNYS-GPPPPSPNNFNG 302
           E PN S     GPN + P PSN+PPNNF++  MPPQ   GMPQGNY+ GPPPP PNNF+G
Sbjct: 245 EFPNASPNQPTGPNMSPPAPSNMPPNNFNA-GMPPQNRGGMPQGNYAGGPPPPPPNNFSG 304

Query: 303 PSPPSPHHFNGPLPPPPNNFNRPLHPHPPPNNFNGPQAPPPSNNFNGPPPRNYGPPPPSY 362
           P PP PH++ G  PP            PPPNNF GP  PPP NN+ G PPRNY PPPP +
Sbjct: 305 P-PPPPHNYAGGPPP------------PPPNNFGGP-PPPPLNNYAGQPPRNYAPPPPPH 364

Query: 363 NSGPVPPYNFEGPQPNNNWGA-PPRNNYGGPSNSSGPPAQNSY-GEMQPNGGGWASNVHN 373
            SG  PP+N+ GPQPNN WG  PP NNYGGPSNS GPP QNSY G  QPN GGW+SNVHN
Sbjct: 365 -SGAAPPHNYGGPQPNNYWGGPPPTNNYGGPSNSGGPPPQNSYGGGGQPNAGGWSSNVHN 410

[Close]

BLAST of Sed0026437 vs. ExPASy TrEMBL
Match: A0A6J1E5B5 (multiple organellar RNA editing factor 8, chloroplastic/mitochondrial isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430715 PE=4 SV=1)

HSP 1 Score: 428.7 bits (1101), Expect = 2.5e-116
Identity = 255/425 (60.00%), Postives = 290/425 (68.24%), Query Frame = 0


Query: 3   LFSRTLPRTLSLSSAI-------------------------LRPLAATVAAESRRLSPAP 62
           LFSR+LP+TL L+S                           LRPL A V A+ R +SPAP
Sbjct: 5   LFSRSLPKTLILTSMFSRSFLTANRAAISASSCSSSSLLRYLRPLTAIVGADFRSVSPAP 64

Query: 63  TAREFATRATSSSLSDPNPNWSNRPPQGDHI--------------APEGQPTRDEIIDSY 122
           + REFATRATSSSL+DPNPNWSNRPP+   +               PEG PTRDEIIDSY
Sbjct: 65  SVREFATRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEIIDSY 124

Query: 123 IKTLAMILGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPRVRWVLPDSYLDVKN 182
           IKTLAM++GSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELP+VRWVLPDSYLDVKN
Sbjct: 125 IKTLAMVIGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYLDVKN 184

Query: 183 KDYGGDPFINGQAVPYDNKSHEEWIRNNQRSKEKDWRKDRPRN-----HRDRQQQYMQNR 242
           KDYGG+PFINGQAVPYD K HEEWIRNN R+ E++ R DRPRN     + +R+++ MQ+R
Sbjct: 185 KDYGGEPFINGQAVPYDPKYHEEWIRNNARANERNKRNDRPRNFDRSRNFERRRENMQSR 244

Query: 243 EIPNVS-----GPNTNGPTPSNVPPNNFSSNSMPPQCNAGMPQGNYS-GPPPPSPNNFNG 302
           E PN S     GPN + P PSN+PPNNF++  M PQ   GMPQGNY+ GPPPP PNNF+G
Sbjct: 245 EFPNASPNQPTGPNMSPPAPSNMPPNNFNA-GMSPQNRGGMPQGNYAGGPPPPPPNNFSG 304

Query: 303 PSPPSPHHFNGPLPPPPNNFNRPLHPHPPPNNFNGPQAPPPSNNFNGPPPRNYG----PP 362
           P                          PPPNNF GP  PPP NN+ G PPRNY     PP
Sbjct: 305 PP-------------------------PPPNNFGGP-PPPPLNNYAGQPPRNYAPPPPPP 364

Query: 363 PPSYNSGPVPPYNFEGPQPNNNWGAPPRNNYGGPSNSSGPPAQNSY-GEMQPNGGGWASN 373
           PP  +SGP PP+N+ GPQPNN WG PP NNYGGPS+S GPP QN+Y G  QPN GGW+SN
Sbjct: 365 PPPPHSGPAPPHNYGGPQPNNYWGGPPPNNYGGPSHSGGPPPQNNYGGGGQPNVGGWSSN 402

[Close]

BLAST of Sed0026437 vs. ExPASy TrEMBL
Match: A0A6J1J148 (multiple organellar RNA editing factor 8, chloroplastic/mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111480381 PE=4 SV=1)

HSP 1 Score: 427.6 bits (1098), Expect = 5.5e-116
Identity = 261/424 (61.56%), Postives = 295/424 (69.58%), Query Frame = 0


Query: 3   LFSRTLPRTL----------------SLSSAI---------LRPLAATVAAESRRLSPAP 62
           LF RTLP+TL                +LSS+          LRPLAA V A+ R LSPA 
Sbjct: 5   LFYRTLPKTLISASIFSRSFLTATGTALSSSSHSSTSLLRRLRPLAAIVVADFRGLSPAA 64

Query: 63  TAREFATRATSSSLSDPNPNWSNRPPQGDHI--------------APEGQPTRDEIIDSY 122
           +AREFAT  TSSSL DPN NWSNRPP+   +               PEG PTRDEIIDS+
Sbjct: 65  SAREFATSTTSSSLKDPNLNWSNRPPKETILLDGCDFEHWLIVMEKPEGDPTRDEIIDSF 124

Query: 123 IKTLAMILGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPRVRWVLPDSYLDVKN 182
           IKTLAM++GSEEEARMKIYSVSTRCY+AFGCLVSEELSYKIKELP+VRWVLPDSYLDVKN
Sbjct: 125 IKTLAMVVGSEEEARMKIYSVSTRCYYAFGCLVSEELSYKIKELPKVRWVLPDSYLDVKN 184

Query: 183 KDYGGDPFINGQAVPYDNKSHEEWIRNNQRSKEKDWR-KDRPRNHRDRQQQYMQNREIPN 242
           KDYGG+PFINGQAVPYD K HEEW+RNN R+ E++ R  D  RN   R  ++ +NRE PN
Sbjct: 185 KDYGGEPFINGQAVPYDPKYHEEWVRNNARANERNRRNSDGSRNFNRR--EHTRNREFPN 244

Query: 243 VSGPNTNGPTPSNVPPNNFSSNSMPPQCNAGMPQGNYSGPP----------PPSPNNFNG 302
            S   T+GP PSN+PP N          + GMPQGNYS PP          PP P+NF+G
Sbjct: 245 ASA--TSGPAPSNMPPRN----------HDGMPQGNYSRPPPPPPPNTFNRPPPPSNFSG 304

Query: 303 PSPPSPHHFNG-PLPPPPNNFNRPLHPHPPPNNFNGPQAPPPSNNFNGPPPRNYGPPPPS 362
           P PP P++F+G P PPPPN+F+RP  P PP NNF+GP  PPP NNF  PPP NY PPPP 
Sbjct: 305 PPPPRPNNFSGPPPPPPPNDFSRP--PPPPQNNFSGPPPPPPQNNFRVPPPHNYAPPPP- 364

Query: 363 YNSG--PVPPYNFEGPQPNNNWGAPPRNNYGGPSNSSGPPAQNSYGEMQPNGGGWASNVH 374
           YNSG  P PPYN   PQPNN+WGAPP N YGG SN+ GPPAQNSY EMQPN GGW+SNVH
Sbjct: 365 YNSGAPPPPPYNSGEPQPNNHWGAPPSNYYGGASNTGGPPAQNSYREMQPNAGGWSSNVH 411

[Close]

BLAST of Sed0026437 vs. TAIR 10
Match: AT3G15000.1 (cobalt ion binding )

HSP 1 Score: 265.8 bits (678), Expect = 5.3e-71
Identity = 188/381 (49.34%), Postives = 231/381 (60.63%), Query Frame = 0


Query: 4   FSRTLPRTLSLSSAIL---RPLAATVAAESRRLSPAPTAREFATRATSSSLSDPNPNWSN 63
           F+ + P   S +S++L   RPL A  ++  R      + +  +T+ATSSSL+DPNPNWSN
Sbjct: 26  FASSAPLAKSPASSLLSRSRPLVAAFSSVFR--GGLVSVKGLSTQATSSSLNDPNPNWSN 85

Query: 64  RPPQGDHI--------------APEGQPTRDEIIDSYIKTLAMILGSEEEARMKIYSVST 123
           RPP+   +               P+G+PTRDEIIDSYIKTLA I+GSE+EARMKIYSVST
Sbjct: 86  RPPKETILLDGCDFEHWLVVVEPPQGEPTRDEIIDSYIKTLAQIVGSEDEARMKIYSVST 145

Query: 124 RCYFAFGCLVSEELSYKIKELPRVRWVLPDSYLDVKNKDYGGDPFINGQAVPYDNKSHEE 183
           RCY+AFG LVSE+LS+K+KEL  VRWVLPDSYLDV+NKDYGG+PFI+G+AVPYD K HEE
Sbjct: 146 RCYYAFGALVSEDLSHKLKELSNVRWVLPDSYLDVRNKDYGGEPFIDGKAVPYDPKYHEE 205

Query: 184 WIRNNQRSKEKDWRKDRPRNHRDRQQQYMQNREIPNVSGPNTNGPTPSNVPPNNFSSNSM 243
           WIRNN R+ E++ R DRPRN+ DR + + + RE  N++G    GP P   P         
Sbjct: 206 WIRNNARANERNRRNDRPRNN-DRSRNFERRRE--NMAG----GPPPQRPP-----MGGP 265

Query: 244 PPQCNAGMPQGNYSGPPPPSPNNFNGPSPPSPHHFNGPLPPPPNNFNRPLHP----HPPP 303
           PP      P    S PPPP   +  G +PP PH      PPPPNN   P HP     PP 
Sbjct: 266 PPP-----PHIGGSAPPPP---HMGGSAPPPPHMGQNYGPPPPNNMGGPRHPPPYGAPPQ 325

Query: 304 NNFNGPQAPPPSNNFNGPPPRNYGPPPPSYNSGPVPPYNFEGPQPNNNWGAPPRNNYGGP 363
           NN  GP+   P  N+ G PP NYG  PP+ N G  PP N+ G  P   +GA P   YGG 
Sbjct: 326 NNMGGPR---PPQNYGGTPPPNYGGAPPANNMGGAPPPNYGGGPP-PQYGAVPPPQYGG- 372

[Close]

BLAST of Sed0026437 vs. TAIR 10
Match: AT1G53260.1 (LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: cobalt ion binding (TAIR:AT3G15000.1); Has 32763 Blast hits to 18534 proteins in 929 species: Archae - 22; Bacteria - 2420; Metazoa - 15140; Fungi - 5401; Plants - 5313; Viruses - 485; Other Eukaryotes - 3982 (source: NCBI BLink). )

HSP 1 Score: 165.6 bits (418), Expect = 7.5e-41
Identity = 128/272 (47.06%), Postives = 152/272 (55.88%), Query Frame = 0


Query: 99  MKIYSVSTRCYFAFGCLVSEELSYKIKELPRVRWVLPDSYLDVKNKDYGGDPFINGQAVP 158
           MKIYSVS +CYFAFG LVSE+LS+KIKELP+V+WVLPDSYLD KNKDYGG+PFI+G+AVP
Sbjct: 1   MKIYSVSHKCYFAFGALVSEDLSHKIKELPKVKWVLPDSYLDGKNKDYGGEPFIDGKAVP 60

Query: 159 YDNKSHEEWIRNNQRSKEKDWRKDRPRN----HRDRQQQYMQNREIPNVSGPNTNGPTPS 218
           YD K HEEWIRNN  +  ++ R  RPRN      DR  Q    R  P   G     P P 
Sbjct: 61  YDPKYHEEWIRNNANATNENRRPRRPRNSDGGRNDRGNQDTGYRRPPPNQGMG-GAPPP- 120

Query: 219 NVPPNNFSSNSMPPQCNAGMPQGNYSGPPPPSPNNFNGPSPPSPHHFNGPLPPPPNNFNR 278
             PP+  ++ +MPP         NY GPPPP   N N   PP+P+       PPP+N  +
Sbjct: 121 --PPHIGNNPNMPPHIQPPNMNQNYRGPPPPPNMNQNYQGPPAPNMNQNYQGPPPSNMGQ 180

Query: 279 PLHPHPPPNNFNGPQAPPPSN---NFNGPPPRNYGPPPPSYNSGPVPPYNFEGPQPNNNW 338
                PPPN     Q PPP N   ++ GPPP N G    +Y    +PP N       N  
Sbjct: 181 NYQGPPPPNMNQSYQGPPPPNMNQSYQGPPPSNMG---QNYRGPSLPPPNMS----QNYE 240

Query: 339 GAPPRNNYGGPSNSSGPPAQNSYGEMQPNGGG 364
           G PP N  GG    SG   QN   + Q  GGG
Sbjct: 241 GPPPPNMNGG---WSGNYQQNGGYQQQGQGGG 258

[Close]

BLAST of Sed0026437 vs. TAIR 10
Match: AT1G53260.2 (LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: cobalt ion binding (TAIR:AT3G15000.1); Has 246 Blast hits to 241 proteins in 32 species: Archae - 0; Bacteria - 2; Metazoa - 7; Fungi - 16; Plants - 212; Viruses - 1; Other Eukaryotes - 8 (source: NCBI BLink). )

HSP 1 Score: 136.0 bits (341), Expect = 6.4e-32
Identity = 81/147 (55.10%), Postives = 96/147 (65.31%), Query Frame = 0


Query: 99  MKIYSVSTRCYFAFGCLVSEELSYKIKELPRVRWVLPDSYLDVKNKDYGGDPFINGQAVP 158
           MKIYSVS +CYFAFG LVSE+LS+KIKELP+V+WVLPDSYLD KNKDYGG+PFI+G+AVP
Sbjct: 1   MKIYSVSHKCYFAFGALVSEDLSHKIKELPKVKWVLPDSYLDGKNKDYGGEPFIDGKAVP 60

Query: 159 YDNKSHEEWIRNNQRSKEKDWRKDRPRN----HRDRQQQYMQNREIPNVSGPNTNGPTPS 218
           YD K HEEWIRNN  +  ++ R  RPRN      DR  Q    R  P   G     P P 
Sbjct: 61  YDPKYHEEWIRNNANATNENRRPRRPRNSDGGRNDRGNQDTGYRRPPPNQGMG-GAPPP- 120

Query: 219 NVPPNNFSSNSMPPQCNAGMPQGNYSG 242
             PP+  ++ +MPP         NY G
Sbjct: 121 --PPHIGNNPNMPPHIQPPNMNQNYRG 143

[Close]

BLAST of Sed0026437 vs. TAIR 10
Match: AT3G06790.2 (plastid developmental protein DAG, putative )

HSP 1 Score: 134.8 bits (338), Expect = 1.4e-31
Identity = 95/231 (41.13%), Postives = 127/231 (54.98%), Query Frame = 0


Query: 4   FSRTLPRTLSLSSAILRPLAATVAAESRRLSPAPTAREFATRATS-SSLSDPNPNWSNRP 63
           +S + P TLS  S    PL   V++    L P   +    T  +  S L+DP+PNWSNRP
Sbjct: 24  YSSSFP-TLSSRSRFAMPLIEKVSSSRTSLGPCYISTRPKTSGSGYSPLNDPSPNWSNRP 83

Query: 64  PQGDHIAPEG---------------QPTRDEIIDSYIKTLAMILGSEEEARMKIYSVSTR 123
           P+ + I  +G               +PT +E+I+SY+KTL  +LG EEEA+ KIYSV T 
Sbjct: 84  PK-ETILLDGCDYEHWLIVMEFTDPKPTEEEMINSYVKTLTSVLGCEEEAKKKIYSVCTS 143

Query: 124 CYFAFGCLVSEELSYKIKELPRVRWVLPDSYLDVKNKDYGGDPFINGQAVPYDNKSHEEW 183
            Y  FG L+SEELS K+K LP V WVLPDSYLDV NKDYGGD ++ G+ +P         
Sbjct: 144 TYTGFGALISEELSCKVKALPGVLWVLPDSYLDVPNKDYGGDLYVEGKVIP--------- 203

Query: 184 IRNNQRSKEKDWRKDRPRNHRDRQQQYMQ-NREIPNVSGPNTNGPTPSNVP 218
            R   R  E+   + RPR   DR+++ MQ  R  P++   +   P   N P
Sbjct: 204 -RPQYRFTEQRHTRPRPRPRYDRRRETMQVERREPSMGLHSPVNPGEFNKP 242

[Close]

BLAST of Sed0026437 vs. TAIR 10
Match: AT3G06790.1 (plastid developmental protein DAG, putative )

HSP 1 Score: 132.9 bits (333), Expect = 5.4e-31
Identity = 94/231 (40.69%), Postives = 127/231 (54.98%), Query Frame = 0


Query: 4   FSRTLPRTLSLSSAILRPLAATVAAESRRLSPAPTAREFATRATS-SSLSDPNPNWSNRP 63
           +S + P TLS  S    PL   V++    L P   +    T  +  S L+DP+PNWSNRP
Sbjct: 24  YSSSFP-TLSSRSRFAMPLIEKVSSSRTSLGPCYISTRPKTSGSGYSPLNDPSPNWSNRP 83

Query: 64  PQGDHIAPEG---------------QPTRDEIIDSYIKTLAMILGSEEEARMKIYSVSTR 123
           P+ + I  +G               +PT +E+I+SY+KTL  +LG +EEA+ KIYSV T 
Sbjct: 84  PK-ETILLDGCDYEHWLIVMEFTDPKPTEEEMINSYVKTLTSVLGWQEEAKKKIYSVCTS 143

Query: 124 CYFAFGCLVSEELSYKIKELPRVRWVLPDSYLDVKNKDYGGDPFINGQAVPYDNKSHEEW 183
            Y  FG L+SEELS K+K LP V WVLPDSYLDV NKDYGGD ++ G+ +P         
Sbjct: 144 TYTGFGALISEELSCKVKALPGVLWVLPDSYLDVPNKDYGGDLYVEGKVIP--------- 203

Query: 184 IRNNQRSKEKDWRKDRPRNHRDRQQQYMQ-NREIPNVSGPNTNGPTPSNVP 218
            R   R  E+   + RPR   DR+++ MQ  R  P++   +   P   N P
Sbjct: 204 -RPQYRFTEQRHTRPRPRPRYDRRRETMQVERREPSMGLHSPVNPGEFNKP 242

The following BLAST results are available for this feature:

BLAST of Sed0026437 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023552822.1	3.9e-124	63.66	multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like [Cucu...	[more]
XP_022984463.1	2.4e-121	61.36	multiple organellar RNA editing factor 8, chloroplastic/mitochondrial isoform X1...	[more]
KAG7015044.1	2.6e-120	62.00	Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial [Cucurbita...	[more]
KAG6577022.1	4.5e-120	62.00	Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial, partial [...	[more]
XP_022922870.1	9.9e-120	61.65	multiple organellar RNA editing factor 8, chloroplastic/mitochondrial isoform X1...	[more]

BLAST of Sed0026437 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LKA5	7.5e-70	49.34	Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial OS=Arabido...	[more]
Q84JZ6	2.0e-30	41.13	Multiple organellar RNA editing factor 3, mitochondrial OS=Arabidopsis thaliana ...	[more]
Q9CAH0	1.4e-28	42.35	Multiple organellar RNA editing factor 7, mitochondrial OS=Arabidopsis thaliana ...	[more]
Q9LPZ1	2.4e-23	38.25	Multiple organellar RNA editing factor 9, chloroplastic OS=Arabidopsis thaliana ...	[more]
Q38732	7.6e-22	35.51	DAG protein, chloroplastic OS=Antirrhinum majus OX=4151 GN=DAG PE=2 SV=1	[more]

BLAST of Sed0026437 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JAJ8	1.1e-121	61.36	multiple organellar RNA editing factor 8, chloroplastic/mitochondrial isoform X1...	[more]
A0A6J1EA12	4.8e-120	61.65	multiple organellar RNA editing factor 8, chloroplastic/mitochondrial isoform X1...	[more]
A0A6J1JAK6	1.4e-119	62.09	multiple organellar RNA editing factor 8, chloroplastic/mitochondrial isoform X2...	[more]
A0A6J1E5B5	2.5e-116	60.00	multiple organellar RNA editing factor 8, chloroplastic/mitochondrial isoform X2...	[more]
A0A6J1J148	5.5e-116	61.56	multiple organellar RNA editing factor 8, chloroplastic/mitochondrial OS=Cucurbi...	[more]

BLAST of Sed0026437 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15000.1	5.3e-71	49.34	cobalt ion binding	[more]
AT1G53260.1	7.5e-41	47.06	LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: cob...	[more]
AT1G53260.2	6.4e-32	55.10	LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: cob...	[more]
AT3G06790.2	1.4e-31	41.13	plastid developmental protein DAG, putative	[more]
AT3G06790.1	5.4e-31	40.69	plastid developmental protein DAG, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 324..373
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 163..194
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 195..236
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 238..323
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 163..373
None	No IPR available	PANTHER	PTHR31346:SF25	MULTIPLE ORGANELLAR RNA EDITING FACTOR 8, CHLOROPLASTIC/MITOCHONDRIAL-LIKE	coord: 5..333
IPR039206	MORF/ORRM1/DAG-like	PANTHER	PTHR31346	MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED	coord: 5..333

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0026437.1	Sed0026437.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016554	cytidine to uridine editing