Sed0026401 (gene) Chayote v1

Overview


Name	Sed0026401
Type	gene
Organism	Sechium edule (Chayote v1)
Description	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic
Location	LG07: 2322987 .. 2325565 (+)
RNA-Seq Expression	Sed0026401
Synteny	Sed0026401

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGACAATCAAATCATAAATCCTCCATATCTGTTTGGCAAACCATAACCGCCCATTGAAGATAAAAGGATAGCCTTTGCCGGAGCTCCTCTGCGACAGCCATGGCCGCCGCCTGCTCCTCCCTCTCCTCAATTCGAGTAATAGGTTCTTTCTTTCTCCTCTTTACCAGTTTCCTTTGAAATGGGGTTTTGTTAGTTTTTACTTAATCCTTGTGATTTAGGTTTACGAAATTCAAGCATCTCTGTATGTATTCACTTCTCTGTTTCCTCCTCTGCTCTCGATTTTGTTCTTTATGTTCTTCTCTTCATGGTGGTTTGTGTCGTTTTTTATGTGGAGGGCTGTGATTTTTTCAGTTGGAGATGTATATTTCAATGGGATTTGACAATGTGAGTGTAAATCTGCCTGAAATTTCTCTGTGAAGTTTTCCATTTTCCTGTTTCTTTGAATTTTCAGGGTGTGTTTGGGCTCCCGTTTATGTAAACGGCCGAGTTGGTTATAATAACCCAACCGATGGTTGCCCCACCATTTATTATAAACGGTGGTTACCTAAACCTACGAGCCCGTTTATTTAAACCTACGTGTCCGTTTATCTACGCCTTACATATATTACTTTTTGTTACATAACCAGCTCCTCAAACACCGTTTATAATAATTCATGTTATAATAACTTGCCCCTCAAACACCATCTATAATAATCCACCATTTATCATAATCTTCCGTCTATAATAACTAAACCGGTGCTCCAAACGCACCCTCAGTGTTTGTTGTGTGTGAGGTTGATTTGAAACTTTTGAGAAATTGCCTATTGGTCTGCCAACCCTCTCTAGATGACACCCATCCAATTATCTATATTCAAATCTTGAGATCTGCAAAGTATGATGGTGCATGCTTATTAGAGACACTTTAAACCGTTACTTAAATGTGGATTGACTTGGTCAAGATGGACTTGGAGAATTAAGAGGTAATAGGTTCATTCATTGTAGTCACCTATCTAGAAATTAATTTTTTACAAGTTTCCTTGACATCCAAATATTGTAGGGTGACACCCTATGTTGCATGAGAATAGTCGAGGTATGCTTAACTGGATCCAGATACTCACGAATATTGAAAATAAACATTGTGTTAGTCATCGTTTGTTAGTTCTAATCAACATGTCATACCAATATTTAAGCATAATGGGTTAGTCTAGTGGAGTGAAACTCTAATTTTCCGGTTTCTAAAAAAAAAATAAAGGTCTTAGAAATCATAAAGTGCTTAAAGGTTATAGTTCAATTTTATGGTGGTCACCTACTAAGGATATATTCTTATAAATTATCTTGACAATCAAATATAGTTGGGTTGGATGATTCTCTCGTGAGAATATTTAAGGTGCTCATAAACTGCATGTACAATCATAGATATAAAAAGATACATTAGACAAGGATTTGTTAAGCATTAACACGGGAAGATAAAAAGTGTACATGAAATGCTTAAAGTTGAAGTACTTTAGTTCAACAAAAATGAGGGGTGAGGATACGAATTCATGACCTTTTGGTTATAGACACACACTTATTTACGGTTAAAGTAAGGCACAAAGCCATCAAATAAATTATCGACAAGAAACTGTTAAAATGTTTATATCATATTCATGGTCTTAGCTATTAGAAACTTATGAGTTACATGAACTGAAACAAACTTCAACACCTGGCAAGAATCCAACTTTGTATTTGATTAGCCTTTAATCTGCATTTGTTTTTCGGTTTTCTGTCAAATCCATTTTGAAAATTGCATCATATTTCTCAAACGTTTTGATTTATAACCTTTTTTCCTTTGACAGAGAGGCTTCAAGTATCATCCTCAAAGAAATCCAAACTGCAGATTCCAAGCAATCCAATGTAGCTCATCTTTGTTGGGTTCTTTTACCTCTTCCAAGATTCATCTGTCATTGGCCTATGCCACTCCTCCATTAAAGCCAGCTTCTGCTGCTGCATATGAAGTTGCAAGGACTATTCCCATAGCCTTGCAAGATGCATCAATGGCGGCCTCTGATTTCATGAACAGTATGACCCTGGCTGACCTCGACCCAGCAACGGCAAAGCTTGCGATCGGCTTTCTAGGGCCGTTTTTCTCACTATTTTCGTTTTTGTTTATTGCGAGAATAGTAATGTCCTGGTATCCCAATGTGCCTGTGGGGAAGTTTCCATATGTTATAGCTTATGTCCCCACTGAGCCACTTCTAACTGCAACAAGGAAGGTGATCCCTCCTCTCGCTGGAGTTGACGTAACGCCAGTTGTCTGGTTCGGATTGGTTAGTTTCCTCAACGAGATATTGCTCGGCCCCCAAGGATTGCTTGTCCTCCTTTCTCAACAGGTCAGCTGAGTCTTGAGATGCTTTGGAGAAACATTTTTGTTTCCTTGTTTAAAGTTCATATCTGTAAGATTCTTCATGTTCTGTATATGTAATTGATATTCTTAGCTGCTGAGGCTCTTTGGTTAAATCAAGCATCGTTTGAAAATTTAATCTACCGAACCGATCGAACTTCCCATCTAAAAAGATGGTCAAGATTACATTACAATTGAATACTATGTTGGTTCTTGTAC

mRNA sequence

GTGACAATCAAATCATAAATCCTCCATATCTGTTTGGCAAACCATAACCGCCCATTGAAGATAAAAGGATAGCCTTTGCCGGAGCTCCTCTGCGACAGCCATGGCCGCCGCCTGCTCCTCCCTCTCCTCAATTCGAAGAGGCTTCAAGTATCATCCTCAAAGAAATCCAAACTGCAGATTCCAAGCAATCCAATGTAGCTCATCTTTGTTGGGTTCTTTTACCTCTTCCAAGATTCATCTGTCATTGGCCTATGCCACTCCTCCATTAAAGCCAGCTTCTGCTGCTGCATATGAAGTTGCAAGGACTATTCCCATAGCCTTGCAAGATGCATCAATGGCGGCCTCTGATTTCATGAACAGTATGACCCTGGCTGACCTCGACCCAGCAACGGCAAAGCTTGCGATCGGCTTTCTAGGGCCGTTTTTCTCACTATTTTCGTTTTTGTTTATTGCGAGAATAGTAATGTCCTGGTATCCCAATGTGCCTGTGGGGAAGTTTCCATATGTTATAGCTTATGTCCCCACTGAGCCACTTCTAACTGCAACAAGGAAGGTGATCCCTCCTCTCGCTGGAGTTGACGTAACGCCAGTTGTCTGGTTCGGATTGGTTAGTTTCCTCAACGAGATATTGCTCGGCCCCCAAGGATTGCTTGTCCTCCTTTCTCAACAGGTCAGCTGAGTCTTGAGATGCTTTGGAGAAACATTTTTGTTTCCTTGTTTAAAGTTCATATCTGTAAGATTCTTCATGTTCTGTATATGTAATTGATATTCTTAGCTGCTGAGGCTCTTTGGTTAAATCAAGCATCGTTTGAAAATTTAATCTACCGAACCGATCGAACTTCCCATCTAAAAAGATGGTCAAGATTACATTACAATTGAATACTATGTTGGTTCTTGTAC

Coding sequence (CDS)

ATGGCCGCCGCCTGCTCCTCCCTCTCCTCAATTCGAAGAGGCTTCAAGTATCATCCTCAAAGAAATCCAAACTGCAGATTCCAAGCAATCCAATGTAGCTCATCTTTGTTGGGTTCTTTTACCTCTTCCAAGATTCATCTGTCATTGGCCTATGCCACTCCTCCATTAAAGCCAGCTTCTGCTGCTGCATATGAAGTTGCAAGGACTATTCCCATAGCCTTGCAAGATGCATCAATGGCGGCCTCTGATTTCATGAACAGTATGACCCTGGCTGACCTCGACCCAGCAACGGCAAAGCTTGCGATCGGCTTTCTAGGGCCGTTTTTCTCACTATTTTCGTTTTTGTTTATTGCGAGAATAGTAATGTCCTGGTATCCCAATGTGCCTGTGGGGAAGTTTCCATATGTTATAGCTTATGTCCCCACTGAGCCACTTCTAACTGCAACAAGGAAGGTGATCCCTCCTCTCGCTGGAGTTGACGTAACGCCAGTTGTCTGGTTCGGATTGGTTAGTTTCCTCAACGAGATATTGCTCGGCCCCCAAGGATTGCTTGTCCTCCTTTCTCAACAGGTCAGCTGA

Protein sequence

MAAACSSLSSIRRGFKYHPQRNPNCRFQAIQCSSSLLGSFTSSKIHLSLAYATPPLKPASAAAYEVARTIPIALQDASMAASDFMNSMTLADLDPATAKLAIGFLGPFFSLFSFLFIARIVMSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIPPLAGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS

Homology

[Close]

BLAST of Sed0026401 vs. NCBI nr
Match: XP_038896183.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 319.7 bits (818), Expect = 1.7e-83
Identity = 166/191 (86.91%), Postives = 174/191 (91.10%), Query Frame = 0


Query: 2   AAACSSLSSIRRGFKYHPQRNPNCRFQAIQCSSSLLGSFTSSKIHLSLAYATPPLKPASA 61
           AAACSSLS IRRGFKYHPQRNPNCRFQA +CSSS+L SFT+SK+HLSLAYAT PLKP  A
Sbjct: 6   AAACSSLSCIRRGFKYHPQRNPNCRFQATKCSSSMLDSFTTSKLHLSLAYATAPLKP--A 65

Query: 62  AAYEVARTIPIALQDASMAASDFMNSMTLADLDPATAKLAIGFLGPFFSLFSFLFIARIV 121
           AAYE ARTIP ALQDASM+ASDFMN++ LADLDP  AKLAIGFLGPF S FSFLFIARIV
Sbjct: 66  AAYEAARTIPFALQDASMSASDFMNNVALADLDPGMAKLAIGFLGPFLSAFSFLFIARIV 125

Query: 122 MSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIPPLAGVDVTPVVWFGLVSFLNEILLGPQ 181
           MSWYP +PVGKFPYVIAY PTEPLL ATRKVIPPL GVDVTPVVWFGLVSFLNEILLGPQ
Sbjct: 126 MSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQ 185

Query: 182 GLLVLLSQQVS 193
           GLLVLLSQQVS
Sbjct: 186 GLLVLLSQQVS 194

[Close]

BLAST of Sed0026401 vs. NCBI nr
Match: XP_004136017.2 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X3 [Cucumis sativus])

HSP 1 Score: 319.3 bits (817), Expect = 2.2e-83
Identity = 167/191 (87.43%), Postives = 173/191 (90.58%), Query Frame = 0


Query: 2   AAACSSLSSIRRGFKYHPQRNPNCRFQAIQCSSSLLGSFTSSKIHLSLAYATPPLKPASA 61
           A ACSSLSSIRRGFKYHPQRNPNC+FQAI+CSSSLLGSFTSSK  LSLAY  PPLKP  A
Sbjct: 3   ATACSSLSSIRRGFKYHPQRNPNCKFQAIKCSSSLLGSFTSSKSLLSLAYVIPPLKP--A 62

Query: 62  AAYEVARTIPIALQDASMAASDFMNSMTLADLDPATAKLAIGFLGPFFSLFSFLFIARIV 121
           AAYE ARTIP  LQDASMAASDF+NSMTLADLDP TAKLAI FLGP  S+FSFLFIARIV
Sbjct: 63  AAYEAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIV 122

Query: 122 MSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIPPLAGVDVTPVVWFGLVSFLNEILLGPQ 181
           MSWYP +PVGKFPYVIAY PTEPLL ATRKVIPPL GVDVTPVVWFGL+SFLNEILLGPQ
Sbjct: 123 MSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDVTPVVWFGLISFLNEILLGPQ 182

Query: 182 GLLVLLSQQVS 193
           GLLVLLSQQVS
Sbjct: 183 GLLVLLSQQVS 191

[Close]

BLAST of Sed0026401 vs. NCBI nr
Match: XP_008451549.1 (PREDICTED: protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic [Cucumis melo])

HSP 1 Score: 316.2 bits (809), Expect = 1.9e-82
Identity = 168/190 (88.42%), Postives = 173/190 (91.05%), Query Frame = 0


Query: 3   AACSSLSSIRRGFKYHPQRNPNCRFQAIQCSSSLLGSFTSSKIHLSLAYATPPLKPASAA 62
           AACSSLSSIRRGFKYHPQRNPN +FQAI+CSSSLLGSFTSSKI  SLAY  PPLKP  AA
Sbjct: 5   AACSSLSSIRRGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKP--AA 64

Query: 63  AYEVARTIPIALQDASMAASDFMNSMTLADLDPATAKLAIGFLGPFFSLFSFLFIARIVM 122
           AYE ARTIP ALQDASMAASDF+NSMTLADLDP TAKLAI FLGP  S+FSFLFIARIVM
Sbjct: 65  AYEAARTIPFALQDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVM 124

Query: 123 SWYPNVPVGKFPYVIAYVPTEPLLTATRKVIPPLAGVDVTPVVWFGLVSFLNEILLGPQG 182
           SWYP +PVGKFPYVIAY PTEPLL ATRKVIPPL GVDVTPVVWFGLVSFLNEILLGPQG
Sbjct: 125 SWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQG 184

Query: 183 LLVLLSQQVS 193
           LLVLLSQQVS
Sbjct: 185 LLVLLSQQVS 192

[Close]

BLAST of Sed0026401 vs. NCBI nr
Match: XP_022953720.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic [Cucurbita moschata])

HSP 1 Score: 313.2 bits (801), Expect = 1.6e-81
Identity = 163/191 (85.34%), Postives = 170/191 (89.01%), Query Frame = 0


Query: 2   AAACSSLSSIRRGFKYHPQRNPNCRFQAIQCSSSLLGSFTSSKIHLSLAYATPPLKPASA 61
           A ACSSLS+IRRGF YHPQ NPNCRFQA +CSSSLLGSFTSSKIHL L YATPPLKPA  
Sbjct: 3   ATACSSLSAIRRGFNYHPQSNPNCRFQAFKCSSSLLGSFTSSKIHLPLVYATPPLKPA-- 62

Query: 62  AAYEVARTIPIALQDASMAASDFMNSMTLADLDPATAKLAIGFLGPFFSLFSFLFIARIV 121
                ARTIP ALQDAS+AASDFMN+++LADLDP TAKLAIGFLGPF S FSFLFIARIV
Sbjct: 63  -----ARTIPFALQDASVAASDFMNNVSLADLDPGTAKLAIGFLGPFLSAFSFLFIARIV 122

Query: 122 MSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIPPLAGVDVTPVVWFGLVSFLNEILLGPQ 181
           MSWYP +PVGKFPYVIAY PTEPLL ATRKVIPPL GVDVTPVVWFGLVSFLNEILLGPQ
Sbjct: 123 MSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQ 182

Query: 182 GLLVLLSQQVS 193
           GLLVLLSQQVS
Sbjct: 183 GLLVLLSQQVS 186

[Close]

BLAST of Sed0026401 vs. NCBI nr
Match: XP_023548988.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 312.0 bits (798), Expect = 3.6e-81
Identity = 163/191 (85.34%), Postives = 168/191 (87.96%), Query Frame = 0


Query: 2   AAACSSLSSIRRGFKYHPQRNPNCRFQAIQCSSSLLGSFTSSKIHLSLAYATPPLKPASA 61
           A ACSSLS+IRRGF YHPQ NPNCRFQA +CSSSLLGSFTSSKIHL L YATPPLKPA  
Sbjct: 3   ATACSSLSAIRRGFNYHPQSNPNCRFQAFKCSSSLLGSFTSSKIHLPLVYATPPLKPA-- 62

Query: 62  AAYEVARTIPIALQDASMAASDFMNSMTLADLDPATAKLAIGFLGPFFSLFSFLFIARIV 121
                ARTIP ALQDASMAASDFMN++ LADLDP TAKLAIG LGPF S FSFLFIARIV
Sbjct: 63  -----ARTIPFALQDASMAASDFMNNVALADLDPGTAKLAIGLLGPFLSAFSFLFIARIV 122

Query: 122 MSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIPPLAGVDVTPVVWFGLVSFLNEILLGPQ 181
           MSWYP +PVGKFPYVIAY PTEPLL ATRKVIPPL GVDVTPVVWFGLVSFLNEILLGPQ
Sbjct: 123 MSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQ 182

Query: 182 GLLVLLSQQVS 193
           GLLVLLSQQVS
Sbjct: 183 GLLVLLSQQVS 186

[Close]

BLAST of Sed0026401 vs. ExPASy Swiss-Prot
Match: Q8RWM7 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CCB3 PE=1 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.1e-40
Identity = 89/136 (65.44%), Postives = 107/136 (78.68%), Query Frame = 0


Query: 55  PLKPASAAAYEVARTIPIALQDASMAASDFMNSMTLADLDPATAKLAIGFLGPFFSLFSF 114
           P+  A+ +  E A T    ++  + + S+ + +++LADLDP TAKLAIG LGP  S F F
Sbjct: 37  PIVSATLSHIEEAATTTNLIRQTN-SISESLRNISLADLDPGTAKLAIGILGPALSAFGF 96

Query: 115 LFIARIVMSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIPPLAGVDVTPVVWFGLVSFLN 174
           LFI RIVMSWYP +PV KFPYV+AY PTEP+L  TRKVIPPLAGVDVTPVVWFGLVSFL+
Sbjct: 97  LFILRIVMSWYPKLPVDKFPYVLAYAPTEPILVQTRKVIPPLAGVDVTPVVWFGLVSFLS 156

Query: 175 EILLGPQGLLVLLSQQ 191
           EIL+GPQGLLVL+SQQ
Sbjct: 157 EILVGPQGLLVLVSQQ 171

[Close]

BLAST of Sed0026401 vs. ExPASy Swiss-Prot
Match: O78424 (Uncharacterized protein ycf19 OS=Guillardia theta OX=55529 GN=ycf19 PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 8.2e-04
Identity = 23/74 (31.08%), Postives = 44/74 (59.46%), Query Frame = 0


Query: 104 FLGPFFSLFSFLFIARIVMSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIPPLAGVDVTP 163
           F+G F  ++  L + R+ ++W+PNV     P+      T+P L   R ++PPL G+D++P
Sbjct: 12  FIG-FLQIYLILLLIRVSLTWFPNVNWYGQPFYSLSRITDPYLKMFRGIVPPLIGIDISP 71

Query: 164 VVWFGLVSFLNEIL 178
           ++ F L+  + +I+
Sbjct: 72  ILGFILLQCIMQIV 84

[Close]

BLAST of Sed0026401 vs. ExPASy TrEMBL
Match: A0A1S3BSI7 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492796 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 9.2e-83
Identity = 168/190 (88.42%), Postives = 173/190 (91.05%), Query Frame = 0


Query: 3   AACSSLSSIRRGFKYHPQRNPNCRFQAIQCSSSLLGSFTSSKIHLSLAYATPPLKPASAA 62
           AACSSLSSIRRGFKYHPQRNPN +FQAI+CSSSLLGSFTSSKI  SLAY  PPLKP  AA
Sbjct: 5   AACSSLSSIRRGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKP--AA 64

Query: 63  AYEVARTIPIALQDASMAASDFMNSMTLADLDPATAKLAIGFLGPFFSLFSFLFIARIVM 122
           AYE ARTIP ALQDASMAASDF+NSMTLADLDP TAKLAI FLGP  S+FSFLFIARIVM
Sbjct: 65  AYEAARTIPFALQDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVM 124

Query: 123 SWYPNVPVGKFPYVIAYVPTEPLLTATRKVIPPLAGVDVTPVVWFGLVSFLNEILLGPQG 182
           SWYP +PVGKFPYVIAY PTEPLL ATRKVIPPL GVDVTPVVWFGLVSFLNEILLGPQG
Sbjct: 125 SWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQG 184

Query: 183 LLVLLSQQVS 193
           LLVLLSQQVS
Sbjct: 185 LLVLLSQQVS 192

[Close]

BLAST of Sed0026401 vs. ExPASy TrEMBL
Match: A0A6J1GQG0 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111456167 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 7.8e-82
Identity = 163/191 (85.34%), Postives = 170/191 (89.01%), Query Frame = 0


Query: 2   AAACSSLSSIRRGFKYHPQRNPNCRFQAIQCSSSLLGSFTSSKIHLSLAYATPPLKPASA 61
           A ACSSLS+IRRGF YHPQ NPNCRFQA +CSSSLLGSFTSSKIHL L YATPPLKPA  
Sbjct: 3   ATACSSLSAIRRGFNYHPQSNPNCRFQAFKCSSSLLGSFTSSKIHLPLVYATPPLKPA-- 62

Query: 62  AAYEVARTIPIALQDASMAASDFMNSMTLADLDPATAKLAIGFLGPFFSLFSFLFIARIV 121
                ARTIP ALQDAS+AASDFMN+++LADLDP TAKLAIGFLGPF S FSFLFIARIV
Sbjct: 63  -----ARTIPFALQDASVAASDFMNNVSLADLDPGTAKLAIGFLGPFLSAFSFLFIARIV 122

Query: 122 MSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIPPLAGVDVTPVVWFGLVSFLNEILLGPQ 181
           MSWYP +PVGKFPYVIAY PTEPLL ATRKVIPPL GVDVTPVVWFGLVSFLNEILLGPQ
Sbjct: 123 MSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQ 182

Query: 182 GLLVLLSQQVS 193
           GLLVLLSQQVS
Sbjct: 183 GLLVLLSQQVS 186

[Close]

BLAST of Sed0026401 vs. ExPASy TrEMBL
Match: A0A0A0K9A7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398190 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 3.3e-80
Identity = 167/210 (79.52%), Postives = 173/210 (82.38%), Query Frame = 0


Query: 2   AAACSSLSSIR-------------------RGFKYHPQRNPNCRFQAIQCSSSLLGSFTS 61
           A ACSSLSSIR                   RGFKYHPQRNPNC+FQAI+CSSSLLGSFTS
Sbjct: 3   ATACSSLSSIRVIGIGSSPLTPNHGNSNFCRGFKYHPQRNPNCKFQAIKCSSSLLGSFTS 62

Query: 62  SKIHLSLAYATPPLKPASAAAYEVARTIPIALQDASMAASDFMNSMTLADLDPATAKLAI 121
           SK  LSLAY  PPLKP  AAAYE ARTIP  LQDASMAASDF+NSMTLADLDP TAKLAI
Sbjct: 63  SKSLLSLAYVIPPLKP--AAAYEAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLAI 122

Query: 122 GFLGPFFSLFSFLFIARIVMSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIPPLAGVDVT 181
            FLGP  S+FSFLFIARIVMSWYP +PVGKFPYVIAY PTEPLL ATRKVIPPL GVDVT
Sbjct: 123 SFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDVT 182

Query: 182 PVVWFGLVSFLNEILLGPQGLLVLLSQQVS 193
           PVVWFGL+SFLNEILLGPQGLLVLLSQQVS
Sbjct: 183 PVVWFGLISFLNEILLGPQGLLVLLSQQVS 210

[Close]

BLAST of Sed0026401 vs. ExPASy TrEMBL
Match: A0A6J1JVN7 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111487957 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 4.0e-78
Identity = 160/191 (83.77%), Postives = 165/191 (86.39%), Query Frame = 0


Query: 2   AAACSSLSSIRRGFKYHPQRNPNCRFQAIQCSSSLLGSFTSSKIHLSLAYATPPLKPASA 61
           A ACSSLS+IRRGF YHPQ NPNCRFQA +CSSSLLGSFTSSKI L L  ATP LKPA  
Sbjct: 3   ATACSSLSAIRRGFNYHPQSNPNCRFQAFKCSSSLLGSFTSSKIPLPLVSATPLLKPA-- 62

Query: 62  AAYEVARTIPIALQDASMAASDFMNSMTLADLDPATAKLAIGFLGPFFSLFSFLFIARIV 121
                ARTIP ALQDASMAASDF N++ LADLDP TAKLAIGFLGPF S FSFLFIARIV
Sbjct: 63  -----ARTIPFALQDASMAASDFTNNVALADLDPGTAKLAIGFLGPFLSAFSFLFIARIV 122

Query: 122 MSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIPPLAGVDVTPVVWFGLVSFLNEILLGPQ 181
           MSWYP +PVGKFPYVIAY PTEPLL ATRKVIPPL GVDVTPVVWFGLVSFLNEILLGPQ
Sbjct: 123 MSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQ 182

Query: 182 GLLVLLSQQVS 193
           GLLVLLSQQVS
Sbjct: 183 GLLVLLSQQVS 186

[Close]

BLAST of Sed0026401 vs. ExPASy TrEMBL
Match: A0A5A7VQJ0 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001630 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.5e-77
Identity = 158/181 (87.29%), Postives = 164/181 (90.61%), Query Frame = 0


Query: 12  RRGFKYHPQRNPNCRFQAIQCSSSLLGSFTSSKIHLSLAYATPPLKPASAAAYEVARTIP 71
           +RGFKYHPQRNPN +FQAI+CSSSLLGSFTSSKI  SLAY  PPLKP  AAAYE ARTIP
Sbjct: 23  QRGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKP--AAAYEAARTIP 82

Query: 72  IALQDASMAASDFMNSMTLADLDPATAKLAIGFLGPFFSLFSFLFIARIVMSWYPNVPVG 131
            ALQDASMAASDF+NSMTLADLDP TAKLAI FLGP  S+FSFLFIARIVMSWYP +PVG
Sbjct: 83  FALQDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVG 142

Query: 132 KFPYVIAYVPTEPLLTATRKVIPPLAGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQV 191
           KFPYVIAY PTEPLL ATRKVIPPL GVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQV
Sbjct: 143 KFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQV 201

Query: 192 S 193
           S
Sbjct: 203 S 201

[Close]

BLAST of Sed0026401 vs. TAIR 10
Match: AT5G36120.1 (cofactor assembly, complex C (B6F) )

HSP 1 Score: 167.9 bits (424), Expect = 7.8e-42
Identity = 89/136 (65.44%), Postives = 107/136 (78.68%), Query Frame = 0


Query: 55  PLKPASAAAYEVARTIPIALQDASMAASDFMNSMTLADLDPATAKLAIGFLGPFFSLFSF 114
           P+  A+ +  E A T    ++  + + S+ + +++LADLDP TAKLAIG LGP  S F F
Sbjct: 37  PIVSATLSHIEEAATTTNLIRQTN-SISESLRNISLADLDPGTAKLAIGILGPALSAFGF 96

Query: 115 LFIARIVMSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIPPLAGVDVTPVVWFGLVSFLN 174
           LFI RIVMSWYP +PV KFPYV+AY PTEP+L  TRKVIPPLAGVDVTPVVWFGLVSFL+
Sbjct: 97  LFILRIVMSWYPKLPVDKFPYVLAYAPTEPILVQTRKVIPPLAGVDVTPVVWFGLVSFLS 156

Query: 175 EILLGPQGLLVLLSQQ 191
           EIL+GPQGLLVL+SQQ
Sbjct: 157 EILVGPQGLLVLVSQQ 171

[Close]

BLAST of Sed0026401 vs. TAIR 10
Match: AT4G27990.1 (YGGT family protein )

HSP 1 Score: 43.5 bits (101), Expect = 2.2e-04
Identity = 23/79 (29.11%), Postives = 44/79 (55.70%), Query Frame = 0


Query: 105 LGPFFSLFSFLFIARIVMSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIPPLAG-VDVTP 164
           L  +  ++S + + R+++SW+PN+P  + P        +P L   R +IPP+   +DV+P
Sbjct: 140 LSKWLDIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSP 199

Query: 165 VVWFGLVSFLNEILLGPQG 183
           ++ F ++  L  IL   +G
Sbjct: 200 LLAFAVLGTLGSILNNSRG 218

The following BLAST results are available for this feature:

BLAST of Sed0026401 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896183.1	1.7e-83	86.91	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X2 ...	[more]
XP_004136017.2	2.2e-83	87.43	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X3 ...	[more]
XP_008451549.1	1.9e-82	88.42	PREDICTED: protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic ...	[more]
XP_022953720.1	1.6e-81	85.34	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic [Cucurbita ...	[more]
XP_023548988.1	3.6e-81	85.34	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X2 ...	[more]

BLAST of Sed0026401 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWM7	1.1e-40	65.44	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic OS=Arabidop...	[more]
O78424	8.2e-04	31.08	Uncharacterized protein ycf19 OS=Guillardia theta OX=55529 GN=ycf19 PE=3 SV=1	[more]

BLAST of Sed0026401 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BSI7	9.2e-83	88.42	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic OS=Cucumis ...	[more]
A0A6J1GQG0	7.8e-82	85.34	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic OS=Cucurbit...	[more]
A0A0A0K9A7	3.3e-80	79.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398190 PE=4 SV=1	[more]
A0A6J1JVN7	4.0e-78	83.77	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X2 ...	[more]
A0A5A7VQJ0	1.5e-77	87.29	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3 OS=Cucumis melo var. makuw...	[more]

BLAST of Sed0026401 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G36120.1	7.8e-42	65.44	cofactor assembly, complex C (B6F)	[more]
AT4G27990.1	2.2e-04	29.11	YGGT family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003425	CCB3/YggT	PFAM	PF02325	YGGT	coord: 108..177 e-value: 3.5E-15 score: 56.1
IPR003425	CCB3/YggT	PANTHER	PTHR33219	YLMG HOMOLOG PROTEIN 2, CHLOROPLASTIC	coord: 9..191
None	No IPR available	PANTHER	PTHR33219:SF11	PROTEIN COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, CHLOROPLASTIC	coord: 9..191

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0026401.1	Sed0026401.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane