Sed0026342 (gene) Chayote v1

Overview
NameSed0026342
Typegene
OrganismSechium edule (Chayote v1)
Descriptionthioredoxin-like protein 4B
LocationLG09: 3350708 .. 3354796 (+)
RNA-Seq ExpressionSed0026342
SyntenySed0026342
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTCCTGATAAATTCCTTGTCAAAAAGAAAAATATAATAACTCCGGTTAAACTTTACGCTCCATCGCACCGCCGTTCGCCGTCGGAAAGACTTCTCTCGCAAATCTCACCGTCGATCTCTCTCACTCTCACCGGTACGATTTCCCATCACAGCTCGAAATCAAAACACGTTTTTGTTTTTCTTTGAACCAGAAATCAAAATATTGTTCATCAATATTTAACACGGACTGAAATTTTCAAAATCGAATGCTAAAATTCAAACTTTTCACAGGCTTTTGGCCTCACTCATTTTGTGTCTTTTGATTGAACCAATTTCTAGTTTCTGGGTATTATTGCTAGCTCCCTTTGTTCATTGCCCTTAACCCTTTTTTTTTTCTTTTTTTTTTTTAAATTTAGTTACAATTTTCTGTTGGAAATCTATGGCATTGAACCATCTTGGATTAATCCAGTGGTGAAAGAGGGACTCAGAGATTTAGATAATTATGGGTTCGATCCATAGTGACCATTTACCTAGGAAATAATTTCTTACACATATAAATATTGTAGGGTTAGTAATATGTCTCGTGAGAATAATCAAGCTGCAAGTAAGTTAGTCCAAACACTCAAGAAAAAAAAAAAAAATCTATGGTATTAGTCTGGTTTTTGCTTGCTGGCTGTAATTTTGTTTGGTTTTAGTTCTGTTTGTTGTTATTTACTGTATTTTGCTGTGACTGTTACTTTCTGGGTGTTTTTTTTTATAGGTTTTAATTTGTGTTAGCTAGCATAGTTTATGGTACGTGAGATGTGTAAAAGATATTAAGAAACAAAAAAATTGCAAGTTCAATTTATGGTGGTCATCTACCTAGGAATTACGGGTTTTCTTGATATCTAAATGTTGTAGGGTCAGATGGTATGTTGCGTGAGAATAGTCGAGGTCAGTGTTTTAAAAGGCGCGCCTAGGCTCAAGTCCCACCTTTTGCGCCTCAATTGTCCCAGGCCAGGCGCGTATAATAAGGCGCGCACCTAATGGCGCCTTACGTGAAGTCCCAGGCGCCAAAAGGCGCGCGCCTTATGGGCTTTTTAATTTTCCTTTGCGTTTTTTGTATTTTAGATCCCCGTACTAGGTCATTCGAAGCGCGTGAAGGTTGATAGTTGAATATTATGTATGTTTTTATATATTATTCTTAGTTAAAACTTCATTTATGTCCATGCAAAGTGTTTTTATTGTGTATACACATATATATATAAATTTTTTGTGTTTTTTTATATAGTGCGCCTTAAGTAAAAAAGCCCTCGCCTTTTGGTGCGCCTTGCGCCTCAGGCTCCAGAGGTCCATTGCGCCTTGCGCTTTTTAAAACACTGGTCGAGGTGCGCTAAGCTTGCCTAGACACTCCCGGGTATTAAAAAATTGTAAAAGATATTGAGAGTTGCATTTATATGGGACGTGTGAGTTTAGAAAAAGTCTAATTAAACAACATATGGTGTCTATGAATCTACTTTAGTTTATTAAACTAAATTAGTTTAGGTGGATTGCAGACGGGAAAGAGGATGAGCTACCTTCTAAGGACCTTAAGAAAGAAGAGAGAAGTGGATTCCATCATTAGGGACACCATTGATAAGGTCCTCATTCTTCGATTTGGCCGGTGTTCCGATTCAGTGTGTCTCCTCCTTGACGATATTGTATATTGCCATATCCCTAACTTTTTTTTTCTTCTTTTAGAGTTGTTGTGTTTATTTTTCAGAATTCATGTTTTTTTTGCTTATGTTTTATTCTTCTTCTATGATCTTAGCTCGCTAAGTGCGCACGGGAAGTTTCGAAGTTTGCTTCAATAGCACTGGTTGATATTGATTCAGAAGAAATACAGGTTTATGTCAAGTACTTTGACATAACTCTTATACCATCCACTGTTTTCTTCTTCAATGCTCATCATATGAAGATGGATGCAGGGTGAGTTTTATCTTGCTGGTCTTTGTTAATGTATTTTTTAAAAATATCTTAGAGTATTTGGGTCAGTTTATGTGCACCTCGATTAATGTCAAACTCTATAACATTTGGAGTCAAAGAAACCTGTAGAATATTAATTCTTAGGTAGACGTTCTGAACTATTGTGACCCATGATGGTTATCTTAGTTAATTTATTGCTTGATTTAGTTTCGAATATGTCTAATATGGATATGTAATGTTGCACATGGTTGATATGTGAGGCCTTAGAAATTTGATGTACATTAGAGCAGCATAACATTTCTTGGGATTATTGACAAACTATTGCGGTCGAAATGAGAAGTAAAGAGTATTTTACATTTCATGGGAATGAGTTCAAACAATGTGGTCACCTAACTAGGATTTAATATCCTACAAATTTTCTTGGAAAACAAATGTAGTAAGGATATACAATTATTTCATGAGAATAGTTGAGACACAAACAAGTAACTTGGACAACCATCGATAGAGTTATTCTTTGACAAGAAAAAGTCCAATTTCATTGATATATATGAACATAGACTCGTTGCCAACTAGAGCAATAACTCAACCGGTATAAGTGCGTGTTCAAACCATGGGATGATGGTATCTAATTATGCTACTTATGCATTCTCTCTTTTTTTATGATGAAAGGGTATTCTTTTGACATGCAGGACTGCAGATCATACAAAGTGGATTGGTGCTTTTAACCAGAAACAGGATTTTATTGATGTGGTGGAGGTAAGTGGTTAATGGGGTTAGAACATAAATGATAAGCTATGAATTAAATAAATTGTTGATTGTTTGTGCTTATGGACTTAATGATTCTTCAGCTAAGAGAGGTCTCAAGTCTCAACATATTTTCGTAATTTTGAGTATCATAGAGAAATGAGAAGAACATTTTAAGTAACTTTTTAATTTTATAATTTTAATGGAATTTATGCCTTCGGATAAGAACTTTCCGTAACATCAAATAGATATAGCATTTGCAATCTTTTCATTGGTTGAAAGAGCTTTCAGTAATCTTTCTTTTATTTGACCATAAAATTTCATAACATCAATCAATGAAATTATTCCCTCTCTATAAAATAAAAGGTTAAATTACAAGTTTGGTTCCTTATCATCTAAAAGTTGTGTCTAATAAGTGTCTGAATTTAAAAAGTTAAATTATTTGGTGCAATTTTATATATGATATGTATTGTAATTTATGGTTGGAAAGGAACACCTATATCTACAAAGATAAGCAACAAAGCATACATACTTTTATTGAGTCTACATCTTTTCTTGCTTTAACTCGAAGTAAACTATTTCCTCCCTTGTGTAAGCGACCACTGGAGGCTTTTTTTTTTTTTTTTTGGTAATTATCCTCTGATAGGATTTTCTTTTACCAATCAATGAAATGATTTATCTTTTTAGCTTAGTCCATTTTCATGAAAAGCTTTGTTTCTTAAAAAGTAAAATCAAATTTATGTTAGATTAGACCCTGCATATTTTGGTTGTCATGCATGTATTCTTTTGGAAACTGGATTTGAAAACATTCTTCTTTTTTTTTTCTTTTTATGACAGGCAATATTTAGGGGAGCAATGAAAGGCAAGCTCATTGTGAATTGTCCATTGCCTCCTGAGCGAGTTCCAAAATACCAATTATTATACAAGGATATGTAGGAGACAAATGGGTATTTAAATGCCTTCCTGTAAGTTTATTTCTAACTAGTTTTACAATGCTATCAGTTCATCTTGCTCTGTAATTTTAGGTGAATCTCAATCAAGTTGCCATAATAAGAATGGGTTAAACTTAATTGAGATTCAGTGAAAAATGTCACAAGATTTCTCTTACTATCTCCATCCTTTGCTGTGAAGTAGTTCAACATTTGTGGTATAAGCTTGAAATTTGGTGAACAGAAGAAAAGTTTATGTGAACTTTTTTCTTGAGCTATGGATTGAAAATGTAAGAAAATGGGAGAACTTGAGAAAGGTCAAGTTATGTACTTGATCCAAGTGGTGAGGTTATATAGTTCTTCATTACCTCTCCTATTTTGTGTAACTAATTTCTCTTTTATTAGTTTGTTAGTGAGGGATTACATCATATATGTAAATGCATCTCCTTATATTTTGTACAGAAGATCAATGAAAATAGAGATTTTTTTTTT

mRNA sequence

ATTTCCTGATAAATTCCTTGTCAAAAAGAAAAATATAATAACTCCGGTTAAACTTTACGCTCCATCGCACCGCCGTTCGCCGTCGGAAAGACTTCTCTCGCAAATCTCACCGTCGATCTCTCTCACTCTCACCGGTGGATTGCAGACGGGAAAGAGGATGAGCTACCTTCTAAGGACCTTAAGAAAGAAGAGAGAAGTGGATTCCATCATTAGGGACACCATTGATAAGGTCCTCATTCTTCGATTTGGCCGGTGTTCCGATTCAGTGTGTCTCCTCCTTGACGATATTCTCGCTAAGTGCGCACGGGAAGTTTCGAAGTTTGCTTCAATAGCACTGGTTGATATTGATTCAGAAGAAATACAGGTTTATGTCAAGTACTTTGACATAACTCTTATACCATCCACTGTTTTCTTCTTCAATGCTCATCATATGAAGATGGATGCAGGGACTGCAGATCATACAAAGTGGATTGGTGCTTTTAACCAGAAACAGGATTTTATTGATGTGGTGGAGGCAATATTTAGGGGAGCAATGAAAGGCAAGCTCATTGTGAATTGTCCATTGCCTCCTGAGCGAGTTCCAAAATACCAATTATTATACAAGGATATGTAGGAGACAAATGGGTATTTAAATGCCTTCCTGTAAGTTTATTTCTAACTAGTTTTACAATGCTATCAGTTCATCTTGCTCTGTAATTTTAGGTGAATCTCAATCAAGTTGCCATAATAAGAATGGGTTAAACTTAATTGAGATTCAGTGAAAAATGTCACAAGATTTCTCTTACTATCTCCATCCTTTGCTGTGAAGTAGTTCAACATTTGTGGTATAAGCTTGAAATTTGGTGAACAGAAGAAAAGTTTATGTGAACTTTTTTCTTGAGCTATGGATTGAAAATGTAAGAAAATGGGAGAACTTGAGAAAGGTCAAGTTATGTACTTGATCCAAGTGGTGAGGTTATATAGTTCTTCATTACCTCTCCTATTTTGTGTAACTAATTTCTCTTTTATTAGTTTGTTAGTGAGGGATTACATCATATATGTAAATGCATCTCCTTATATTTTGTACAGAAGATCAATGAAAATAGAGATTTTTTTTTT

Coding sequence (CDS)

ATGAGCTACCTTCTAAGGACCTTAAGAAAGAAGAGAGAAGTGGATTCCATCATTAGGGACACCATTGATAAGGTCCTCATTCTTCGATTTGGCCGGTGTTCCGATTCAGTGTGTCTCCTCCTTGACGATATTCTCGCTAAGTGCGCACGGGAAGTTTCGAAGTTTGCTTCAATAGCACTGGTTGATATTGATTCAGAAGAAATACAGGTTTATGTCAAGTACTTTGACATAACTCTTATACCATCCACTGTTTTCTTCTTCAATGCTCATCATATGAAGATGGATGCAGGGACTGCAGATCATACAAAGTGGATTGGTGCTTTTAACCAGAAACAGGATTTTATTGATGTGGTGGAGGCAATATTTAGGGGAGCAATGAAAGGCAAGCTCATTGTGAATTGTCCATTGCCTCCTGAGCGAGTTCCAAAATACCAATTATTATACAAGGATATGTAG

Protein sequence

MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTADHTKWIGAFNQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERVPKYQLLYKDM
Homology
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BLAST of Sed0026342 vs. NCBI nr
Match: XP_022152114.1 (thioredoxin-like protein 4B [Momordica charantia] >XP_022152121.1 thioredoxin-like protein 4B [Momordica charantia])

HSP 1 Score: 293.5 bits (750), Expect = 1.0e-75
Identity = 144/151 (95.36%), Postives = 150/151 (99.34%), Query Frame = 0 

Query: 1   MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MSYLLRTL KKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL
Sbjct: 1   MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60

Query: 61  VDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTADHTKWIGAFNQKQDFIDVVEA 120
           VDIDSEEIQVY+KYFDI+LIPSTVFFFNAHHMKMD+GTADHTKWIGAF+QKQDFIDVVEA
Sbjct: 61  VDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEA 120

Query: 121 IFRGAMKGKLIVNCPLPPERVPKYQLLYKDM 152
           IFRGAMKGKLIVNCPLPPER+PKYQLLYKD+
Sbjct: 121 IFRGAMKGKLIVNCPLPPERIPKYQLLYKDL 151

[Close]
BLAST of Sed0026342 vs. NCBI nr
Match: KAG6575968.1 (Thioredoxin-like protein 4B, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014491.1 Thioredoxin-like protein 4B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 291.2 bits (744), Expect = 5.1e-75
Identity = 143/151 (94.70%), Postives = 149/151 (98.68%), Query Frame = 0 

Query: 1   MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MSYLLRTL  KREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL
Sbjct: 1   MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60

Query: 61  VDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTADHTKWIGAFNQKQDFIDVVEA 120
           VDIDSEEIQVY+KYFDITLIPSTVFFFNAHHMKMD+GTADHTKWIGAF++KQDFIDVVEA
Sbjct: 61  VDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHEKQDFIDVVEA 120

Query: 121 IFRGAMKGKLIVNCPLPPERVPKYQLLYKDM 152
           IFRGAMKGKLIVNCPLPPER+PKYQLLYKD+
Sbjct: 121 IFRGAMKGKLIVNCPLPPERIPKYQLLYKDV 151

[Close]
BLAST of Sed0026342 vs. NCBI nr
Match: XP_022991475.1 (thioredoxin-like protein 4B [Cucurbita maxima] >XP_022991476.1 thioredoxin-like protein 4B [Cucurbita maxima])

HSP 1 Score: 290.4 bits (742), Expect = 8.8e-75
Identity = 142/151 (94.04%), Postives = 149/151 (98.68%), Query Frame = 0 

Query: 1   MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MSYLLRTL  KREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL
Sbjct: 1   MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60

Query: 61  VDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTADHTKWIGAFNQKQDFIDVVEA 120
           VDIDSEE+QVY+KYFDITLIPSTVFFFNAHHMKMD+GTADHTKWIGAF++KQDFIDVVEA
Sbjct: 61  VDIDSEELQVYIKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHEKQDFIDVVEA 120

Query: 121 IFRGAMKGKLIVNCPLPPERVPKYQLLYKDM 152
           IFRGAMKGKLIVNCPLPPER+PKYQLLYKD+
Sbjct: 121 IFRGAMKGKLIVNCPLPPERIPKYQLLYKDV 151

[Close]
BLAST of Sed0026342 vs. NCBI nr
Match: XP_004139666.1 (thioredoxin-like protein 4B [Cucumis sativus] >XP_011659173.1 thioredoxin-like protein 4B [Cucumis sativus] >XP_031745245.1 thioredoxin-like protein 4B [Cucumis sativus] >XP_031745246.1 thioredoxin-like protein 4B [Cucumis sativus] >KGN44925.2 hypothetical protein Csa_015728 [Cucumis sativus])

HSP 1 Score: 289.3 bits (739), Expect = 2.0e-74
Identity = 141/151 (93.38%), Postives = 148/151 (98.01%), Query Frame = 0 

Query: 1   MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MSYLLRTL KK EVDS+IRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFAS+AL
Sbjct: 1   MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVAL 60

Query: 61  VDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTADHTKWIGAFNQKQDFIDVVEA 120
           VDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMD+GTADHTKW+GAF+QKQDFIDVVEA
Sbjct: 61  VDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWVGAFHQKQDFIDVVEA 120

Query: 121 IFRGAMKGKLIVNCPLPPERVPKYQLLYKDM 152
           IFRGAMKGKLIVNCPLPPER+PKYQL YKD+
Sbjct: 121 IFRGAMKGKLIVNCPLPPERIPKYQLFYKDV 151

[Close]
BLAST of Sed0026342 vs. NCBI nr
Match: XP_022953679.1 (thioredoxin-like protein 4B [Cucurbita moschata] >XP_022953680.1 thioredoxin-like protein 4B [Cucurbita moschata])

HSP 1 Score: 289.3 bits (739), Expect = 2.0e-74
Identity = 142/151 (94.04%), Postives = 149/151 (98.68%), Query Frame = 0 

Query: 1   MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MSYLLRTL  KREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL
Sbjct: 1   MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60

Query: 61  VDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTADHTKWIGAFNQKQDFIDVVEA 120
           VDIDSEEIQVY+KYFDITLIPSTVFFFNAHHMKMD+GTADHTKWIGAF++KQDFIDVVEA
Sbjct: 61  VDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHEKQDFIDVVEA 120

Query: 121 IFRGAMKGKLIVNCPLPPERVPKYQLLYKDM 152
           IFRGAMKGKLIV+CPLPPER+PKYQLLYKD+
Sbjct: 121 IFRGAMKGKLIVSCPLPPERIPKYQLLYKDV 151

[Close]
BLAST of Sed0026342 vs. ExPASy Swiss-Prot
Match: Q9NX01 (Thioredoxin-like protein 4B OS=Homo sapiens OX=9606 GN=TXNL4B PE=1 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 4.0e-46
Identity = 89/151 (58.94%), Postives = 117/151 (77.48%), Query Frame = 0 

Query: 1   MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MS+LL  L  K+EVD  I+ T +KVL+LRFGR  D VCL LDDIL+K + ++SK A+I L
Sbjct: 1   MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYL 60

Query: 61  VDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTADHTKWIGAFNQKQDFIDVVEA 120
           VD+D  +  VY +YFDI+ IPSTVFFFN  HMK+D G+ DHTK++G+F  KQDFID++E 
Sbjct: 61  VDVD--QTAVYTQYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEV 120

Query: 121 IFRGAMKGKLIVNCPLPPERVPKYQLLYKDM 152
           I+RGAM+GKLIV  P+ P+ +PKY LLY+D+
Sbjct: 121 IYRGAMRGKLIVQSPIDPKNIPKYDLLYQDI 149

[Close]
BLAST of Sed0026342 vs. ExPASy Swiss-Prot
Match: Q8BUH1 (Thioredoxin-like protein 4B OS=Mus musculus OX=10090 GN=Txnl4b PE=2 SV=2)

HSP 1 Score: 185.3 bits (469), Expect = 5.2e-46
Identity = 90/151 (59.60%), Postives = 116/151 (76.82%), Query Frame = 0 

Query: 1   MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MS+LL  L  K+EVD  I+ T +KVL+LRFGR  D VCL LDDIL+K + ++SK A+I L
Sbjct: 1   MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSADLSKMAAIYL 60

Query: 61  VDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTADHTKWIGAFNQKQDFIDVVEA 120
           VD+D     VY +YFDI+ IPSTVFFFN  HMK+D G+ DHTK++G+F  KQDFID++E 
Sbjct: 61  VDVD--HTPVYTQYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEV 120

Query: 121 IFRGAMKGKLIVNCPLPPERVPKYQLLYKDM 152
           I+RGAM+GKLIV  P+ P+ VPKY LLY+D+
Sbjct: 121 IYRGAMRGKLIVQSPIDPKNVPKYDLLYQDI 149

[Close]
BLAST of Sed0026342 vs. ExPASy Swiss-Prot
Match: Q9FE62 (Thioredoxin-like protein YLS8 OS=Arabidopsis thaliana OX=3702 GN=YLS8 PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.1e-17
Identity = 52/137 (37.96%), Postives = 78/137 (56.93%), Query Frame = 0 

Query: 1   MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MSYLL  L     VD  I    ++++++RFG   D  C+ +D++LA  A  +  FA I L
Sbjct: 1   MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDI-DSEEIQVYVKYFDITLIPSTV-FFFNAHHMKMDAGTADHTKWIGAFNQKQDFIDVV 120
           VDI +  +     + +D    PSTV FFF   H+ +D GT ++ K   A   KQ+FID++
Sbjct: 61  VDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDII 120

Query: 121 EAIFRGAMKGKLIVNCP 136
           E ++RGA KG+ +V  P
Sbjct: 121 ETVYRGARKGRGLVIAP 133

[Close]
BLAST of Sed0026342 vs. ExPASy Swiss-Prot
Match: P83876 (Thioredoxin-like protein 4A OS=Homo sapiens OX=9606 GN=TXNL4A PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.6e-17
Identity = 48/135 (35.56%), Postives = 78/135 (57.78%), Query Frame = 0 

Query: 1   MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MSY+L  L    +VD  I    D+V+++RFG   D  C+ +D++L   A +V  FA I L
Sbjct: 1   MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60

Query: 61  VDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTADHTKWIGAFNQKQDFIDVVEA 120
           VDI   E+  + K +++    + +FFF   H+ +D GT ++ K   A   KQ+ +D++E 
Sbjct: 61  VDI--TEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIET 120

Query: 121 IFRGAMKGKLIVNCP 136
           ++RGA KG+ +V  P
Sbjct: 121 VYRGARKGRGLVVSP 133

[Close]
BLAST of Sed0026342 vs. ExPASy Swiss-Prot
Match: P83877 (Thioredoxin-like protein 4A OS=Mus musculus OX=10090 GN=Txnl4a PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.6e-17
Identity = 48/135 (35.56%), Postives = 78/135 (57.78%), Query Frame = 0 

Query: 1   MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MSY+L  L    +VD  I    D+V+++RFG   D  C+ +D++L   A +V  FA I L
Sbjct: 1   MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60

Query: 61  VDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTADHTKWIGAFNQKQDFIDVVEA 120
           VDI   E+  + K +++    + +FFF   H+ +D GT ++ K   A   KQ+ +D++E 
Sbjct: 61  VDI--TEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIET 120

Query: 121 IFRGAMKGKLIVNCP 136
           ++RGA KG+ +V  P
Sbjct: 121 VYRGARKGRGLVVSP 133

[Close]
BLAST of Sed0026342 vs. ExPASy TrEMBL
Match: A0A6J1DGN8 (thioredoxin-like protein 4B OS=Momordica charantia OX=3673 GN=LOC111019903 PE=3 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 5.0e-76
Identity = 144/151 (95.36%), Postives = 150/151 (99.34%), Query Frame = 0 

Query: 1   MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MSYLLRTL KKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL
Sbjct: 1   MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60

Query: 61  VDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTADHTKWIGAFNQKQDFIDVVEA 120
           VDIDSEEIQVY+KYFDI+LIPSTVFFFNAHHMKMD+GTADHTKWIGAF+QKQDFIDVVEA
Sbjct: 61  VDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEA 120

Query: 121 IFRGAMKGKLIVNCPLPPERVPKYQLLYKDM 152
           IFRGAMKGKLIVNCPLPPER+PKYQLLYKD+
Sbjct: 121 IFRGAMKGKLIVNCPLPPERIPKYQLLYKDL 151

[Close]
BLAST of Sed0026342 vs. ExPASy TrEMBL
Match: A0A6J1JT18 (thioredoxin-like protein 4B OS=Cucurbita maxima OX=3661 GN=LOC111488081 PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 4.3e-75
Identity = 142/151 (94.04%), Postives = 149/151 (98.68%), Query Frame = 0 

Query: 1   MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MSYLLRTL  KREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL
Sbjct: 1   MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60

Query: 61  VDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTADHTKWIGAFNQKQDFIDVVEA 120
           VDIDSEE+QVY+KYFDITLIPSTVFFFNAHHMKMD+GTADHTKWIGAF++KQDFIDVVEA
Sbjct: 61  VDIDSEELQVYIKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHEKQDFIDVVEA 120

Query: 121 IFRGAMKGKLIVNCPLPPERVPKYQLLYKDM 152
           IFRGAMKGKLIVNCPLPPER+PKYQLLYKD+
Sbjct: 121 IFRGAMKGKLIVNCPLPPERIPKYQLLYKDV 151

[Close]
BLAST of Sed0026342 vs. ExPASy TrEMBL
Match: A0A6J1GQC5 (thioredoxin-like protein 4B OS=Cucurbita moschata OX=3662 GN=LOC111456136 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 9.5e-75
Identity = 142/151 (94.04%), Postives = 149/151 (98.68%), Query Frame = 0 

Query: 1   MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MSYLLRTL  KREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL
Sbjct: 1   MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60

Query: 61  VDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTADHTKWIGAFNQKQDFIDVVEA 120
           VDIDSEEIQVY+KYFDITLIPSTVFFFNAHHMKMD+GTADHTKWIGAF++KQDFIDVVEA
Sbjct: 61  VDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHEKQDFIDVVEA 120

Query: 121 IFRGAMKGKLIVNCPLPPERVPKYQLLYKDM 152
           IFRGAMKGKLIV+CPLPPER+PKYQLLYKD+
Sbjct: 121 IFRGAMKGKLIVSCPLPPERIPKYQLLYKDV 151

[Close]
BLAST of Sed0026342 vs. ExPASy TrEMBL
Match: A0A1S3BH38 (thioredoxin-like protein 4B OS=Cucumis melo OX=3656 GN=LOC103489754 PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.8e-73
Identity = 139/151 (92.05%), Postives = 149/151 (98.68%), Query Frame = 0 

Query: 1   MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MSYLLRTL KK EVDS+IRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL
Sbjct: 1   MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60

Query: 61  VDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTADHTKWIGAFNQKQDFIDVVEA 120
           VDIDSEE+QVYVKYFDITLIPSTVFFFNAHHMKMD+GTADHTKW+GAF+QKQ+FIDVVEA
Sbjct: 61  VDIDSEEMQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWVGAFHQKQNFIDVVEA 120

Query: 121 IFRGAMKGKLIVNCPLPPERVPKYQLLYKDM 152
           IFRGAMKGKLIVNCPLPPE++PKYQLL+KD+
Sbjct: 121 IFRGAMKGKLIVNCPLPPEQIPKYQLLFKDV 151

[Close]
BLAST of Sed0026342 vs. ExPASy TrEMBL
Match: A0A6P4ATD0 (thioredoxin-like protein 4B OS=Ziziphus jujuba OX=326968 GN=LOC107426724 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 3.7e-71
Identity = 133/151 (88.08%), Postives = 146/151 (96.69%), Query Frame = 0 

Query: 1   MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MSYLL TL KKREVDSII+DTIDKVL+LRFGR SDSVCLLLDD+L+K AREVSKFA+IAL
Sbjct: 1   MSYLLNTLTKKREVDSIIKDTIDKVLVLRFGRASDSVCLLLDDVLSKSAREVSKFATIAL 60

Query: 61  VDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTADHTKWIGAFNQKQDFIDVVEA 120
           VDIDSE++QVYV YFDITLIPST+FFFNAHHMKMD+GTADHTKW+GAF+QKQDFIDVVEA
Sbjct: 61  VDIDSEDVQVYVNYFDITLIPSTIFFFNAHHMKMDSGTADHTKWVGAFHQKQDFIDVVEA 120

Query: 121 IFRGAMKGKLIVNCPLPPERVPKYQLLYKDM 152
           IFRGAMKGKLIVNCPLPPER+PKYQLLYKD+
Sbjct: 121 IFRGAMKGKLIVNCPLPPERIPKYQLLYKDV 151

[Close]
BLAST of Sed0026342 vs. TAIR 10
Match: AT3G24730.1 (mRNA splicing factor, thioredoxin-like U5 snRNP )

HSP 1 Score: 250.4 bits (638), Expect = 9.4e-67
Identity = 115/151 (76.16%), Postives = 138/151 (91.39%), Query Frame = 0 

Query: 1   MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MSYLL+TL  K E+D +IRDTID+VL+LRFGR SD+VCL  D+ILAK  R+VSKFA +AL
Sbjct: 9   MSYLLKTLTTKEEIDRVIRDTIDEVLVLRFGRSSDAVCLQHDEILAKSVRDVSKFAKVAL 68

Query: 61  VDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTADHTKWIGAFNQKQDFIDVVEA 120
           VD+DSE++QVYVKYFDITL PST+FFFNAHHMK+D+GTADHTKW+GAF+ KQDFIDVVEA
Sbjct: 69  VDVDSEDVQVYVKYFDITLFPSTIFFFNAHHMKLDSGTADHTKWVGAFHIKQDFIDVVEA 128

Query: 121 IFRGAMKGKLIVNCPLPPERVPKYQLLYKDM 152
           I+RGAMKGK+IV CP+PPER+PKYQL+YKD+
Sbjct: 129 IYRGAMKGKMIVQCPIPPERIPKYQLVYKDV 159

[Close]
BLAST of Sed0026342 vs. TAIR 10
Match: AT5G08290.1 (mRNA splicing factor, thioredoxin-like U5 snRNP )

HSP 1 Score: 89.0 bits (219), Expect = 3.6e-18
Identity = 52/137 (37.96%), Postives = 78/137 (56.93%), Query Frame = 0 

Query: 1   MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MSYLL  L     VD  I    ++++++RFG   D  C+ +D++LA  A  +  FA I L
Sbjct: 1   MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDI-DSEEIQVYVKYFDITLIPSTV-FFFNAHHMKMDAGTADHTKWIGAFNQKQDFIDVV 120
           VDI +  +     + +D    PSTV FFF   H+ +D GT ++ K   A   KQ+FID++
Sbjct: 61  VDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDII 120

Query: 121 EAIFRGAMKGKLIVNCP 136
           E ++RGA KG+ +V  P
Sbjct: 121 ETVYRGARKGRGLVIAP 133

The following BLAST results are available for this feature:
BLAST of Sed0026342 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022152114.11.0e-7595.36thioredoxin-like protein 4B [Momordica charantia] >XP_022152121.1 thioredoxin-li... [more]
KAG6575968.15.1e-7594.70Thioredoxin-like protein 4B, partial [Cucurbita argyrosperma subsp. sororia] >KA... [more]
XP_022991475.18.8e-7594.04thioredoxin-like protein 4B [Cucurbita maxima] >XP_022991476.1 thioredoxin-like ... [more]
XP_004139666.12.0e-7493.38thioredoxin-like protein 4B [Cucumis sativus] >XP_011659173.1 thioredoxin-like p... [more]
XP_022953679.12.0e-7494.04thioredoxin-like protein 4B [Cucurbita moschata] >XP_022953680.1 thioredoxin-lik... [more]
BLAST of Sed0026342 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9NX014.0e-4658.94Thioredoxin-like protein 4B OS=Homo sapiens OX=9606 GN=TXNL4B PE=1 SV=1[more]
Q8BUH15.2e-4659.60Thioredoxin-like protein 4B OS=Mus musculus OX=10090 GN=Txnl4b PE=2 SV=2[more]
Q9FE625.1e-1737.96Thioredoxin-like protein YLS8 OS=Arabidopsis thaliana OX=3702 GN=YLS8 PE=1 SV=1[more]
P838766.6e-1735.56Thioredoxin-like protein 4A OS=Homo sapiens OX=9606 GN=TXNL4A PE=1 SV=1[more]
P838776.6e-1735.56Thioredoxin-like protein 4A OS=Mus musculus OX=10090 GN=Txnl4a PE=1 SV=1[more]
BLAST of Sed0026342 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DGN85.0e-7695.36thioredoxin-like protein 4B OS=Momordica charantia OX=3673 GN=LOC111019903 PE=3 ... [more]
A0A6J1JT184.3e-7594.04thioredoxin-like protein 4B OS=Cucurbita maxima OX=3661 GN=LOC111488081 PE=3 SV=... [more]
A0A6J1GQC59.5e-7594.04thioredoxin-like protein 4B OS=Cucurbita moschata OX=3662 GN=LOC111456136 PE=3 S... [more]
A0A1S3BH381.8e-7392.05thioredoxin-like protein 4B OS=Cucumis melo OX=3656 GN=LOC103489754 PE=3 SV=1[more]
A0A6P4ATD03.7e-7188.08thioredoxin-like protein 4B OS=Ziziphus jujuba OX=326968 GN=LOC107426724 PE=3 SV... [more]
BLAST of Sed0026342 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G24730.19.4e-6776.16mRNA splicing factor, thioredoxin-like U5 snRNP [more]
AT5G08290.13.6e-1837.96mRNA splicing factor, thioredoxin-like U5 snRNP [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004123Dim1 familySMARTSM01410DIM1_2coord: 4..138
e-value: 1.5E-75
score: 267.0
IPR004123Dim1 familyPIRSFPIRSF017199Dim1coord: 1..144
e-value: 8.4E-50
score: 165.9
IPR004123Dim1 familyPFAMPF02966DIM1coord: 4..137
e-value: 1.6E-48
score: 163.9
IPR004123Dim1 familyPANTHERPTHR12052THIOREDOXIN-LIKE PROTEN 4A, 4Bcoord: 1..150
NoneNo IPR availableGENE3D3.40.30.10Glutaredoxincoord: 1..140
e-value: 1.2E-47
score: 163.0
NoneNo IPR availablePANTHERPTHR12052:SF4THIOREDOXIN-LIKE PROTEIN 4Bcoord: 1..150
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 8..137

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0026342.1Sed0026342.1mRNA
Sed0026342.2Sed0026342.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0006413 translational initiation
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
cellular_component GO:0005682 U5 snRNP
molecular_function GO:0003743 translation initiation factor activity