Sed0026190 (gene) Chayote v1

Overview


Name	Sed0026190
Type	gene
Organism	Sechium edule (Chayote v1)
Description	S4 RNA-binding domain-containing protein
Location	LG04: 30623321 .. 30629634 (-)
RNA-Seq Expression	Sed0026190
Synteny	Sed0026190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATAAGCAGATAATAAAATGTGAGAAAACCTGGCGCACATAAGAAGTTGAGAGCTCAAAGCCCTAACCATGGCGGCAACGACGACAAGCATTGGGGCTCTGTGGAGTCTAAGAAGAGCAGCAACTCATTCTTCCAGTTTCCGAAATCATCTTCCCGTTAACCTCAACAACCTCTCCTTCCACGGCGCTCGCTTTCCATCTTCTCCTCTGCGCTCCTCAGGTTTCATTTCGCTTCTTCTCCATTCACTGTTCTTCGGCATTTCAAATCATCCTCAATGTTATAGAAATATATGAACTATGATTGTTTAGTATTCGGATTTGTGCGCTGTGATTGCTGCTTATATCGAATTAATTGGACAATTAGGTCGGGAGATAAGGAGCTTTGTATTGTGCATCAATTGGAATTGATTTTCCGTTTGTCTTTAATTAGTCAGATTCCATTTCGATTGAGAGAGCATGATGGATGACTTAGGACTTGGTGCTGATTTGGGTTAACTTCCTTAGTGATTTTGGATGGCTAAAAGTTTTTTTTTTGGTGAAACCTAGAGCGTTAAAATACAAAATCATAACCATCGTTTTTAAACAAGGGTAACTACGCCTGTCCCTAGGCCAGGTACCGGAGACATCGAAGGAGTAACGTCACAGATGAGTCTCGAACCCGGATCTTAAGGGGAGCATACCCTCAAAGTTAGAGATGTCCGTTTTCCCCGTGGGGACCCGCCCCTAACGGGGCGGGGAACGAGGCCGGGGACGGGGAAAAAATTCCCTATGGGTTAATCGGGGCCGGGGATGGGGAATGTATTCCCCGTCCCCGATTCCCCGATTACTTTTTTTATTTTTTATATTTTTTTCTATACTTTACCTCTTTTATTTCAAATAAAAATATATTTTTTGATGAAATTATCCATGCATATAAGTGTTTTTCTTTAATAATTAACATTATAGTTGAAATTTATAAATATTTTCTAAGAAAATCTAATTATTTAAGAGTATTGTCTAAAAAAATATTAAAAAAATGTAATTTTTTTTTTTTTTTCAAAAATCCCCGCGGGGACCCGATCCCCGCCGGGAATCCCCGCCCCGATCCCCGAAAAAAAACCGGGGATTTTTCCGGGGACGGGGATTAAATTAAGTGGCGGGGATGGGGACGGGGAAGCCATTCCCCGGCCCCTCCCCGCCCTGTGGACATCTCTACTCAAAGCCCTAGTCTTCAACTACTACGCCATCCCTTGGGGTAAAAAAATCATAACCATCTTGGGTTGACCTGATAGTCAAAACGGTCTTTGAGGACTAAGAGATTATAAGTTCAATTCATAGTGTACACCTATATGTGAATTAGTTTCTTACGATTTTTATTGACAACCAAATGTTTTAGTAGTGATAGATGTTTCTGTGAAATTTGTTAAGGTGTGCATAAGTTGGCTCAAAAACTCAGAAATCAGAATAACAAGAAAAAAAATTCATTTTAGACCTAATTAAATTGGTTGAATCATTTTTTGGAGAAACCACTTTAAAGTTGATAATCCAAAAAATGATTGCCAATCACTTTAGAATCACTTCAATATTTGGTAGAACGTACTTTCTCCTAAGCTATGCGTACACCAACTTGTTTCCTACACATATAAATTCCTTGGATTATGTCACTTGCATTTTTAACTCTACAAGTGATACGTATTTTACTTGGGATAAAGGAAAAAAACTCAGTTTTACTTCTTGATGCAATCCTGATTGTCAACCCAAGTATTGTTACTTAAATGATTCAATATTTGCATTTTAATAACTTATTAATCTCCCCATTGGCATTTCAGGAATATGCCAATTAGCACAAGCTGTAAAGGGAGACATTGATGTTTTACTCAATGGAGTTGCAGATAAAGGTGTTATTGTAGACGTGAAACATATTCTTGTGATGGTACTGAGTCTTGATAAACTTTTACTAACATGTTAGTATATTAGACTAGAGCCTTAACAATCTTGTTACTGTATTTTCTTTTTCATCGCCTTTTTTACCCATGTTGCTAAGACTGAATAAGCATGGATCTACAATTTCTTAAGAATCAAAGGGAAAAAGGAAACCCCTTTTCGTCTTCTATTTTGATGAGATTTGTACAAAAACAGCAATACATTAACCCTTTTATCTTTTGGTTGTGAGAGATGATTCTGGTTCTTTACTCTTTTTGCTTTCATTTAGGTCAAACGTTCATTATCAAGACGGGAAGTTCTTCATACGAACTTTCTCACCCCACCTGTGGTTAAAGAGTCAATGCTAGCTATTCAAAAACTAGCTGAAGTGAAGGCAATAGCTCAGGGAGGTTACCCAGAGGTGAAAATTTAAAAGTTTTGCTTTTTTTTTTCAGTTGGGAATTCAGTTTATAAATCTAAGGTCTGTTGCTGATACCACACTTCTTTCAAGTTGACGAAATGTTTAGGCAGAGCGCTGCCGGATTTCAGTTGGACATGCAGATGAACTTACAACTGATCCAGACATCATTTCAGCATTGAGGTATCGTTGGTTGATCTTCCACATTAATTCATTTTAATTGAGCTCTGGTAAAATCTTTTGTTCTTTTGTTCTTTCCTCTTTTTTAAGTACTTTTTTTCCTTCTCAGTATTACAGGAAATTTTATGTTTCACCCTTGCTCACATGGAGACTTCCTTGGATCAATTCTTGGTACAGGCATTGCTAGGGAAAAGCTTGGTGATATCATACTCCAGGTATCATTGTATTCAAATTTAAGTATAAATGTAACTACAACCGTTTTGTTCTTATTCTTACTGCACATTGCTATTGTTTGTTTCTTTTTAATGATTTGTATTTGTGCAAGGACTGTTTGAATTTATAACTCGTTAAGTATTATAAATGCTTGATACTTTGGTCATCTGTGGGTTAGTTTTATGATGACCAAAGTAGAATTCTCTTTGTCAAATCCAAAACTGATGGTAAAATTGTGTTTTGGGTTATTTTGCTCTTGCTGCCTCCTGACTATGTTCAGAAGTTTGATCATAACTGCTAAAATTTATTTTTCAATTCCTCCTTGTGGAACAAAACTTTTTTCAATCATTCGATTCAATATAGATTAATGCTACAACGTCTAGTTTCATGCGTTGTCGATATCCAGAAGCAACTTTGTGTACAATTTTGTAGGTTATTAATAAAAGATAGCGACAAGGTTGCATGGGCCAGATTTCTTTTCTTCTCTTATTGTTACCGTATTTTATAGGAAGACAAGGGAGCTCAAGTAGTTATTGCTCCAGAACTTGTCGACTTCCTTGCATCATCTCTGCGCAAGGTATCGTCCTTATCTTGGGTCGTTGCTTCTAACATTCATACAAAAATTAACATGAGATTGAAAATATGTTTTTACCTGACTGCATTTCCTTTGTGTATAAAACAAATTGTGATATATTTTAGTGAAGCCTGCATAGCATATAGCTATTCAATTCAAACTATTTGTACATTTGGCTTCATTGATCTCTTTATTTGTTGTGGAAACCTTAATTTCAGGTTGGCAATGTCACAGTTTCTTGTACAAGGATTCCATTGTCAGCTCTTGATTACGAACCACCAAAGTACGAAGTTATATTGTTTATATTTCACATTGATTTCCATGTTTATTTTAATTTAGTTTTTTTTTCCAATTTTTTTTATTTGCAGGACTAAGACATTTAAAACGATTGAGGCATCTCTTAGGGTGGATGCCATTGCAAGTGCTGGCTTCAAGATTTCACGGTCTAAACTAGTGGACTTGATCAGGTACATTGGCTTCCTATTATTTTTTCACATTGTGATTACTAGTATGGAATGAGTCAATTATATATTTTTCTTTATTATTTTTTCACATTGGCTTCCCAAACTTTCATAAATTATATTTCAATTTTCTTCTTTCCAAATTCAAGAATTCGAAGAACTAGTTTCTAAGTTACTATCCCTAAAAAGAAAAAGAATAATTTATGAGGCCTTGTTTGGTTTGTGAGTTGGGATCTGGATTCTTGGAATTTGGATTCCCCAAATTCAATACCTTATTCAAATTCTCTGGAATCTTGATTACGGTGTTTGGTTTGTTGTATTGATATTTCAAAATAAAAAATGTTGTTTGGTTTGTTTAAAAGACAAGGTTTATAAACCCCCGGATTCCCACGGCAAGCCAAACAAGGCCTGAAATTTTTTTGTGTTGTCGAATATTTTGCAATATGCTTCTCTGTTACCTATGCTTACTAGTGGTGTAGAATATGGTTGACTTCTATTAATAATTTCACACCTTTTGCTCAATATTAATGAAAGCACACGAGGTTACATTAAATGGGAATGTACTACTACTATTAGATAGTATAATGTCCCATTTCAAAATTAATTGGCAATAATTGAAATAACACATCTTTTTTATAAATGTTATGAAGTATCCTCACATTTCCAATGTGACAATATGCCTTCTCAAGATGGTCCTCTTTGGATCCACCATTCGTAATCGAATTTCAATTTCTTTTTATTGAACCGAATATCCATTTGAATTTAATGGACCTTAATACCATATTAGGTAATATAGAAGTTCATCGTAAAACTATTGGTAATGAGTGAAGTAACTCATCTTCTTGTTAATGTTGGAGGTATCCCGTCTTTCCATGTAAAATCCTCAACTACAAGTCTACAACGAACTTTTATAATGTATAAGTTTGCTTGTATACTTTTTTGATTTGCTTGTTAGACTGGTATTATGTTGAGAATCCTGCATTTGAAAGATGGGGAGGCTACAACATTTATAAGACACATGAGGTTCTTCTTTCGTAGCCAATTGCTTTTGAGATGGAACTCATGATTATCTAATATATTAATATAAAATTTAGGTGTCATTTTGAAGTACTTGTAGGTAGTTAGATTGTGCCATCATATGGTAATGAATGATGAGTGACAACTTCAAAGTATCTGGGGAGTTGGGTGTTCCTGCGTCTTATCTCCTACTTCTTTTGTGAAAGTATTTGAAATTTTAATTGTTACATGAGCAGTAGCGGCGATGTTCGTGTCAATTGGACGACAATTACAAAAAACGGAACCATACTAAAGACTGGTGATATTGTTTCTGTTAGCGGGAAAGGGAGACTAAAGGTGGGCTTTCCAATCATTCGTAACCAAAACTAGTTCCTCGGACCCATTTGATAACTATTTGGTTTTTTAATTTGATATTTGAAAATTAAGTCTATAAATACTATTTTCGATAAATTTCCTTGTTTCCTTTGTTTTGTTGTTTACTTTTTACATGTATTTTAAAAGATCAGGTCATGTTTTGAAAACTTTTCGATATTTGTGAGTGGGGTCAGTTTGTGTGCATCTTGACTTGTCTCGCAAAGAATACCATGTGATCTTACGACATTTAGATGTCAAAGAAATCTGCAAAAAAATTAACGTGCTTTTGGTTTCTTAGTATCCTTTTGACTAAAAGATATTTTTCAAAATCTTGTTTTTTTCTTATGGAATTTGACTAAAGTTCAACTGCCTCCTCAAGAGAACAAGCTTAATTTTGAAAAAATAAAAACAAAAACCTATGGCCCCGTTTGATAACCATTTGATTTTTGGTTTTTGAAATTTAAGCCTATTCTTAAGCAAATTTCTTACAATGTGTTTCATCTTTCCTACAATCTATCCATTTTTTTTTAAGAAAGTAGGTGAATGTTAACCAACTTTTAAAAACTAAAACAAACTTTTGGAAGCTTACTTTTTTTGTTTCAAAATTTTGGTTTAGTTTCTACAAATATAAGTGAGAGGTAGATATTCAAGTAAAAAAAAACATATGGTAAGGTAGTTGTTGTAGGCTTAAATTTAAAAAACCAAAAATAAAAAATGAAATGGTTATCAAACGGGGCATATGGGATGGAGGCCAATATTTTTGATATTACTGAATTCTGGTTATTTTGCTCATATTCAGATTGGAGAAATAAATTCTACAAAAAAGGGGAAATTTGGTGTTGAGCTTATCAGGTATGTATAAGCTGTGAGGATATTGGAGATTATTATCATGGAATCTCCCATTGGGATTAACATCAGGATTGCTTCCTCATGAGTAATAAAAGTAAGTCATTAACCTGATTGTACATGTTAAAATCAGAACATCCATTCTTCAAAAATTTTCATTTGGAAACTCTCTGCCAGTGATTATGATGTTCTTTACTGGAATGAATTATCCTTCAAACTAATGTTGTCATGCAGAGTTATAGCTTCACATTAACCATTTGTATATTCAATGATCAGTTTATTTCCATCCCATTTCTAGATGTGTATTTGTCTGTTGTTTCTTTTGAATTCCTCAATGTTTGAAGCAGAG

mRNA sequence

AAATAAGCAGATAATAAAATGTGAGAAAACCTGGCGCACATAAGAAGTTGAGAGCTCAAAGCCCTAACCATGGCGGCAACGACGACAAGCATTGGGGCTCTGTGGAGTCTAAGAAGAGCAGCAACTCATTCTTCCAGTTTCCGAAATCATCTTCCCGTTAACCTCAACAACCTCTCCTTCCACGGCGCTCGCTTTCCATCTTCTCCTCTGCGCTCCTCAGGAATATGCCAATTAGCACAAGCTGTAAAGGGAGACATTGATGTTTTACTCAATGGAGTTGCAGATAAAGGTGTTATTGTAGACGTGAAACATATTCTTGTGATGGTCAAACGTTCATTATCAAGACGGGAAGTTCTTCATACGAACTTTCTCACCCCACCTGTGGTTAAAGAGTCAATGCTAGCTATTCAAAAACTAGCTGAAGTGAAGGCAATAGCTCAGGGAGGTTACCCAGAGGCAGAGCGCTGCCGGATTTCAGTTGGACATGCAGATGAACTTACAACTGATCCAGACATCATTTCAGCATTGAGTATTACAGGAAATTTTATGTTTCACCCTTGCTCACATGGAGACTTCCTTGGATCAATTCTTGGTACAGGCATTGCTAGGGAAAAGCTTGGTGATATCATACTCCAGGAAGACAAGGGAGCTCAAGTAGTTATTGCTCCAGAACTTGTCGACTTCCTTGCATCATCTCTGCGCAAGGTTGGCAATGTCACAGTTTCTTGTACAAGGATTCCATTGTCAGCTCTTGATTACGAACCACCAAAGACTAAGACATTTAAAACGATTGAGGCATCTCTTAGGGTGGATGCCATTGCAAGTGCTGGCTTCAAGATTTCACGGTCTAAACTAGTGGACTTGATCAGTAGCGGCGATGTTCGTGTCAATTGGACGACAATTACAAAAAACGGAACCATACTAAAGACTGGTGATATTGTTTCTGTTAGCGGGAAAGGGAGACTAAAGATTGGAGAAATAAATTCTACAAAAAAGGGGAAATTTGGTGTTGAGCTTATCAGGTATGTATAAGCTGTGAGGATATTGGAGATTATTATCATGGAATCTCCCATTGGGATTAACATCAGGATTGCTTCCTCATGAGTAATAAAAGTAAGTCATTAACCTGATTGTACATGTTAAAATCAGAACATCCATTCTTCAAAAATTTTCATTTGGAAACTCTCTGCCAGTGATTATGATGTTCTTTACTGGAATGAATTATCCTTCAAACTAATGTTGTCATGCAGAGTTATAGCTTCACATTAACCATTTGTATATTCAATGATCAGTTTATTTCCATCCCATTTCTAGATGTGTATTTGTCTGTTGTTTCTTTTGAATTCCTCAATGTTTGAAGCAGAG

Coding sequence (CDS)

ATGGCGGCAACGACGACAAGCATTGGGGCTCTGTGGAGTCTAAGAAGAGCAGCAACTCATTCTTCCAGTTTCCGAAATCATCTTCCCGTTAACCTCAACAACCTCTCCTTCCACGGCGCTCGCTTTCCATCTTCTCCTCTGCGCTCCTCAGGAATATGCCAATTAGCACAAGCTGTAAAGGGAGACATTGATGTTTTACTCAATGGAGTTGCAGATAAAGGTGTTATTGTAGACGTGAAACATATTCTTGTGATGGTCAAACGTTCATTATCAAGACGGGAAGTTCTTCATACGAACTTTCTCACCCCACCTGTGGTTAAAGAGTCAATGCTAGCTATTCAAAAACTAGCTGAAGTGAAGGCAATAGCTCAGGGAGGTTACCCAGAGGCAGAGCGCTGCCGGATTTCAGTTGGACATGCAGATGAACTTACAACTGATCCAGACATCATTTCAGCATTGAGTATTACAGGAAATTTTATGTTTCACCCTTGCTCACATGGAGACTTCCTTGGATCAATTCTTGGTACAGGCATTGCTAGGGAAAAGCTTGGTGATATCATACTCCAGGAAGACAAGGGAGCTCAAGTAGTTATTGCTCCAGAACTTGTCGACTTCCTTGCATCATCTCTGCGCAAGGTTGGCAATGTCACAGTTTCTTGTACAAGGATTCCATTGTCAGCTCTTGATTACGAACCACCAAAGACTAAGACATTTAAAACGATTGAGGCATCTCTTAGGGTGGATGCCATTGCAAGTGCTGGCTTCAAGATTTCACGGTCTAAACTAGTGGACTTGATCAGTAGCGGCGATGTTCGTGTCAATTGGACGACAATTACAAAAAACGGAACCATACTAAAGACTGGTGATATTGTTTCTGTTAGCGGGAAAGGGAGACTAAAGATTGGAGAAATAAATTCTACAAAAAAGGGGAAATTTGGTGTTGAGCTTATCAGGTATGTATAA

Protein sequence

MAATTTSIGALWSLRRAATHSSSFRNHLPVNLNNLSFHGARFPSSPLRSSGICQLAQAVKGDIDVLLNGVADKGVIVDVKHILVMVKRSLSRREVLHTNFLTPPVVKESMLAIQKLAEVKAIAQGGYPEAERCRISVGHADELTTDPDIISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEDKGAQVVIAPELVDFLASSLRKVGNVTVSCTRIPLSALDYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTTITKNGTILKTGDIVSVSGKGRLKIGEINSTKKGKFGVELIRYV

Homology

[Close]

BLAST of Sed0026190 vs. NCBI nr
Match: XP_008456024.1 (PREDICTED: putative RNA-binding protein YlmH isoform X2 [Cucumis melo])

HSP 1 Score: 549.7 bits (1415), Expect = 1.7e-152
Identity = 288/320 (90.00%), Postives = 299/320 (93.44%), Query Frame = 0


Query: 1   MAATTTSIGALWSLRRAATHSSSFRNHLPVNLNNLSFHGARFPSSPLRSSGICQLAQAVK 60
           MAATTT+IGALWSL R A+  SSFR  LPVNLN L FH  RFPSSPL +SGICQL QAVK
Sbjct: 1   MAATTTTIGALWSL-RIASQFSSFRRPLPVNLNRLYFHETRFPSSPLGTSGICQLVQAVK 60

Query: 61  GDIDVLLNGVADKGVIVDVKHILVMVKRSLSRREVLHTNFLTPPVVKESMLAIQKLAEVK 120
           GDIDVLLNGV DKGVIVDVK ILVM KRSLSRREVLHTNFLTPPVVKESMLAIQKLA+VK
Sbjct: 61  GDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVK 120

Query: 121 AIAQGGYPEAERCRISVGHADELTTDPDIISALSITGNFMFHPCSHGDFLGSILGTGIAR 180
           AIAQGGYPEAERCRISVGH+DELT+DPDIISALSITGNF FHPCSHGDFLGSILGTGIAR
Sbjct: 121 AIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAR 180

Query: 181 EKLGDIILQEDKGAQVVIAPELVDFLASSLRKVGNVTVSCTRIPLSALDYEPPKTKTFKT 240
           EKLGDII+QE+ GAQVVI PELVDFL SSLRKVGNVTVSCTRIPL+AL+YEPPKTKTFKT
Sbjct: 181 EKLGDIIIQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKT 240

Query: 241 IEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTTITKNGTILKTGDIVSVSGKGRLK 300
           IEASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWT ITKNGTILKTGDIVSVSGKGRLK
Sbjct: 241 IEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLK 300

Query: 301 IGEINSTKKGKFGVELIRYV 321
           IGEINSTKKGKF VELIRYV
Sbjct: 301 IGEINSTKKGKFAVELIRYV 319

[Close]

BLAST of Sed0026190 vs. NCBI nr
Match: XP_038899605.1 (putative RNA-binding protein YlmH [Benincasa hispida])

HSP 1 Score: 547.7 bits (1410), Expect = 6.5e-152
Identity = 288/318 (90.57%), Postives = 299/318 (94.03%), Query Frame = 0


Query: 6   TSIGALWSLRRAATHSSSFRNHLPVNLNNLSFHGARF---PSSPLRSSGICQLAQAVKGD 65
           TSIGA WSLRRAA  SSSFR+ L VNLN LSFH ARF   PSSPL SSGICQL QAVKGD
Sbjct: 4   TSIGARWSLRRAA-QSSSFRSPLAVNLNKLSFHEARFPSSPSSPLGSSGICQLVQAVKGD 63

Query: 66  IDVLLNGVADKGVIVDVKHILVMVKRSLSRREVLHTNFLTPPVVKESMLAIQKLAEVKAI 125
           IDVLLNGV DKGVIVDVKHILVM KRSLSRR VLHTNFLTPPVVKES+LA+QKLA+VKAI
Sbjct: 64  IDVLLNGVGDKGVIVDVKHILVMAKRSLSRRVVLHTNFLTPPVVKESILALQKLADVKAI 123

Query: 126 AQGGYPEAERCRISVGHADELTTDPDIISALSITGNFMFHPCSHGDFLGSILGTGIAREK 185
           AQGGYPEAERCRISVGHADEL +DPDI+SALSITGNFMFHPCSHGDFLG+ILGTGIAREK
Sbjct: 124 AQGGYPEAERCRISVGHADELLSDPDIVSALSITGNFMFHPCSHGDFLGAILGTGIAREK 183

Query: 186 LGDIILQEDKGAQVVIAPELVDFLASSLRKVGNVTVSCTRIPLSALDYEPPKTKTFKTIE 245
           LGDIILQE+KGAQVV+ PELVDFLASSLRKVGNVTVSCTRIPL+ALDYEPPKTKTFKTIE
Sbjct: 184 LGDIILQEEKGAQVVVVPELVDFLASSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIE 243

Query: 246 ASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTTITKNGTILKTGDIVSVSGKGRLKIG 305
           ASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWT ITKNGTILKTGDIVSVSGKGRLKIG
Sbjct: 244 ASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIG 303

Query: 306 EINSTKKGKFGVELIRYV 321
           EINSTKKGKF VELIRYV
Sbjct: 304 EINSTKKGKFAVELIRYV 320

[Close]

BLAST of Sed0026190 vs. NCBI nr
Match: XP_004146247.1 (uncharacterized protein LOC101221944 [Cucumis sativus] >XP_031738291.1 uncharacterized protein LOC101221944 [Cucumis sativus] >KGN57626.1 hypothetical protein Csa_011390 [Cucumis sativus])

HSP 1 Score: 547.7 bits (1410), Expect = 6.5e-152
Identity = 289/320 (90.31%), Postives = 299/320 (93.44%), Query Frame = 0


Query: 1   MAATTTSIGALWSLRRAATHSSSFRNHLPVNLNNLSFHGARFPSSPLRSSGICQLAQAVK 60
           MAAT TSI ALWSLRRAA   SSFR  L +NLN L F+ ARFPSSPL +SGICQL QAVK
Sbjct: 1   MAATATSIAALWSLRRAA-QFSSFRRPLALNLNRLCFNEARFPSSPLGTSGICQLVQAVK 60

Query: 61  GDIDVLLNGVADKGVIVDVKHILVMVKRSLSRREVLHTNFLTPPVVKESMLAIQKLAEVK 120
           GDIDVLLNGV DKGVIVDVK ILVM KRSLSRREVLHTNFLTPPVVKESMLAIQKLA+VK
Sbjct: 61  GDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVK 120

Query: 121 AIAQGGYPEAERCRISVGHADELTTDPDIISALSITGNFMFHPCSHGDFLGSILGTGIAR 180
           AIAQGGYPEAERCRISVGHADELT+DPDIISALSITGNF FHPCSHGDFLGSILGTGIAR
Sbjct: 121 AIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAR 180

Query: 181 EKLGDIILQEDKGAQVVIAPELVDFLASSLRKVGNVTVSCTRIPLSALDYEPPKTKTFKT 240
           EKLGDI+LQE+ GAQVVI PELVDFL SSLRKVGNVTVSCTRIPL+AL+YEPPKTKTFKT
Sbjct: 181 EKLGDIMLQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKT 240

Query: 241 IEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTTITKNGTILKTGDIVSVSGKGRLK 300
           IEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWT+ITKNGTILKTGDIVSVSGKGRLK
Sbjct: 241 IEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGRLK 300

Query: 301 IGEINSTKKGKFGVELIRYV 321
           IGEINSTKKGKF VELIRYV
Sbjct: 301 IGEINSTKKGKFAVELIRYV 319

[Close]

BLAST of Sed0026190 vs. NCBI nr
Match: XP_022981895.1 (uncharacterized protein LOC111480897 isoform X1 [Cucurbita maxima])

HSP 1 Score: 541.6 bits (1394), Expect = 4.6e-150
Identity = 285/323 (88.24%), Postives = 298/323 (92.26%), Query Frame = 0


Query: 1   MAATTTSIGALWSLRRAATHSSSFRNHLPVNLNNLSFHGARF---PSSPLRSSGICQLAQ 60
           MAA T SIGALWSLRRAA  SSS R  L VNL+ +SFH ARF   PSSPL SSG+CQL Q
Sbjct: 1   MAAATASIGALWSLRRAA-QSSSLRTPLAVNLSKVSFHEARFPTSPSSPLGSSGMCQLVQ 60

Query: 61  AVKGDIDVLLNGVADKGVIVDVKHILVMVKRSLSRREVLHTNFLTPPVVKESMLAIQKLA 120
           AVKGDIDVLLNGV DKGVIVDVKHILVM KRSLSRREVLHTNFLTPPVVKESMLAI+KLA
Sbjct: 61  AVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIKKLA 120

Query: 121 EVKAIAQGGYPEAERCRISVGHADELTTDPDIISALSITGNFMFHPCSHGDFLGSILGTG 180
           +VKAIAQGGYPEAERCRISVGHADELT+DPD++SALSITGNFMFH C+HGDFLG+ILGTG
Sbjct: 121 DVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFMFHTCTHGDFLGAILGTG 180

Query: 181 IAREKLGDIILQEDKGAQVVIAPELVDFLASSLRKVGNVTVSCTRIPLSALDYEPPKTKT 240
           IAREKLGDIILQE+KGAQVVI PELVDFL SSL KVGNVTVSCTRIPL+ LDYEPPKTKT
Sbjct: 181 IAREKLGDIILQEEKGAQVVIVPELVDFLVSSLHKVGNVTVSCTRIPLTDLDYEPPKTKT 240

Query: 241 FKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTTITKNGTILKTGDIVSVSGKG 300
           FKTIEASLRVDA+ASAGFKISRSKLVD ISSGDVRVNWTTITKNGTILKTGDIVSVSGKG
Sbjct: 241 FKTIEASLRVDALASAGFKISRSKLVDFISSGDVRVNWTTITKNGTILKTGDIVSVSGKG 300

Query: 301 RLKIGEINSTKKGKFGVELIRYV 321
           RLKIGEIN TKKGKF VELIRYV
Sbjct: 301 RLKIGEINPTKKGKFAVELIRYV 322

[Close]

BLAST of Sed0026190 vs. NCBI nr
Match: KAG6600381.1 (hypothetical protein SDJN03_05614, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031043.1 ylmH [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 540.8 bits (1392), Expect = 7.9e-150
Identity = 282/323 (87.31%), Postives = 298/323 (92.26%), Query Frame = 0


Query: 1   MAATTTSIGALWSLRRAATHSSSFRNHLPVNLNNLSFHGARF---PSSPLRSSGICQLAQ 60
           MAA T SIGALWSLRRAA  SSSFR  L +NL  +SFH ARF   PSSPL +SG+CQL Q
Sbjct: 1   MAAATASIGALWSLRRAA-QSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQ 60

Query: 61  AVKGDIDVLLNGVADKGVIVDVKHILVMVKRSLSRREVLHTNFLTPPVVKESMLAIQKLA 120
           AVKGDIDVLLNGV DKGVIVDVKHILVM KRSLSRREVLHTNFLTPPVVKESMLAIQKLA
Sbjct: 61  AVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLA 120

Query: 121 EVKAIAQGGYPEAERCRISVGHADELTTDPDIISALSITGNFMFHPCSHGDFLGSILGTG 180
           +VKAIAQGGYPEAERCRISVGHADELT+DPD++SALSITGNF+FH C+HGDFLG+ILGTG
Sbjct: 121 DVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTG 180

Query: 181 IAREKLGDIILQEDKGAQVVIAPELVDFLASSLRKVGNVTVSCTRIPLSALDYEPPKTKT 240
           IAREKLGDIILQE+KGAQVVI PELVDFL SSLRKVGNVTVSCTRIPL+ LDYEPPKTKT
Sbjct: 181 IAREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKT 240

Query: 241 FKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTTITKNGTILKTGDIVSVSGKG 300
           FKTIEASLRVDA+ASAGFKISRSKLVD IS GDVRVNWTTITKNGTILKTGDIVSVSGKG
Sbjct: 241 FKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKG 300

Query: 301 RLKIGEINSTKKGKFGVELIRYV 321
           RLKIGEIN TKKGKF +ELI+YV
Sbjct: 301 RLKIGEINPTKKGKFAIELIKYV 322

[Close]

BLAST of Sed0026190 vs. ExPASy Swiss-Prot
Match: P71020 (Putative RNA-binding protein YlmH OS=Bacillus subtilis (strain 168) OX=224308 GN=ylmH PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.8e-19
Identity = 69/225 (30.67%), Postives = 114/225 (50.67%), Query Frame = 0


Query: 98  TNFLTPPVVKESML--AIQKLAEVKAIAQGGYPEAERCRISVGHADELTTDPDI-ISALS 157
           T+FL P   +E ++  A+   A+V     GGY  AER R  +        + D  + A +
Sbjct: 35  TDFLDP---REQVILSAVTGQADVGLAFSGGYDRAERKRAILFPEYITPEESDFELQAFN 94

Query: 158 ITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEDKGAQVVIAPELVDFLASSLRKVG 217
           +     F    H   LG+++G G+ R+K GDI+  E    Q++++ +  DF+A+ L + G
Sbjct: 95  VRYADKFVSVDHRSLLGALMGIGLKRQKFGDIVFSE-TAVQLIVSADTADFVAAQLTQAG 154

Query: 218 NVTVSCTRIPLSALDYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVN 277
              VS  +I LS L+      +      +SLR+DA+ ++  + SR K   L+ +G V+VN
Sbjct: 155 KAAVSLEKIDLSDLNIPAVDVEIRDDTVSSLRLDAVCASMSRQSRQKSQTLVKNGLVKVN 214

Query: 278 WTTITKNGTILKTGDIVSVSGKGRLKIGEI-NSTKKGKFGVELIR 319
           W  +     I+  GD++S+ G GR  + +I   TKK K+ V   R
Sbjct: 215 WKVVEDPSYIVAEGDMLSIRGFGRCSLTKIEGKTKKDKWRVTFER 255

[Close]

BLAST of Sed0026190 vs. ExPASy TrEMBL
Match: A0A1S3C3I2 (putative RNA-binding protein YlmH isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496076 PE=4 SV=1)

HSP 1 Score: 549.7 bits (1415), Expect = 8.2e-153
Identity = 288/320 (90.00%), Postives = 299/320 (93.44%), Query Frame = 0


Query: 1   MAATTTSIGALWSLRRAATHSSSFRNHLPVNLNNLSFHGARFPSSPLRSSGICQLAQAVK 60
           MAATTT+IGALWSL R A+  SSFR  LPVNLN L FH  RFPSSPL +SGICQL QAVK
Sbjct: 1   MAATTTTIGALWSL-RIASQFSSFRRPLPVNLNRLYFHETRFPSSPLGTSGICQLVQAVK 60

Query: 61  GDIDVLLNGVADKGVIVDVKHILVMVKRSLSRREVLHTNFLTPPVVKESMLAIQKLAEVK 120
           GDIDVLLNGV DKGVIVDVK ILVM KRSLSRREVLHTNFLTPPVVKESMLAIQKLA+VK
Sbjct: 61  GDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVK 120

Query: 121 AIAQGGYPEAERCRISVGHADELTTDPDIISALSITGNFMFHPCSHGDFLGSILGTGIAR 180
           AIAQGGYPEAERCRISVGH+DELT+DPDIISALSITGNF FHPCSHGDFLGSILGTGIAR
Sbjct: 121 AIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAR 180

Query: 181 EKLGDIILQEDKGAQVVIAPELVDFLASSLRKVGNVTVSCTRIPLSALDYEPPKTKTFKT 240
           EKLGDII+QE+ GAQVVI PELVDFL SSLRKVGNVTVSCTRIPL+AL+YEPPKTKTFKT
Sbjct: 181 EKLGDIIIQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKT 240

Query: 241 IEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTTITKNGTILKTGDIVSVSGKGRLK 300
           IEASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWT ITKNGTILKTGDIVSVSGKGRLK
Sbjct: 241 IEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLK 300

Query: 301 IGEINSTKKGKFGVELIRYV 321
           IGEINSTKKGKF VELIRYV
Sbjct: 301 IGEINSTKKGKFAVELIRYV 319

[Close]

BLAST of Sed0026190 vs. ExPASy TrEMBL
Match: A0A0A0LC56 (S4 RNA-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G233470 PE=4 SV=1)

HSP 1 Score: 547.7 bits (1410), Expect = 3.1e-152
Identity = 289/320 (90.31%), Postives = 299/320 (93.44%), Query Frame = 0


Query: 1   MAATTTSIGALWSLRRAATHSSSFRNHLPVNLNNLSFHGARFPSSPLRSSGICQLAQAVK 60
           MAAT TSI ALWSLRRAA   SSFR  L +NLN L F+ ARFPSSPL +SGICQL QAVK
Sbjct: 1   MAATATSIAALWSLRRAA-QFSSFRRPLALNLNRLCFNEARFPSSPLGTSGICQLVQAVK 60

Query: 61  GDIDVLLNGVADKGVIVDVKHILVMVKRSLSRREVLHTNFLTPPVVKESMLAIQKLAEVK 120
           GDIDVLLNGV DKGVIVDVK ILVM KRSLSRREVLHTNFLTPPVVKESMLAIQKLA+VK
Sbjct: 61  GDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVK 120

Query: 121 AIAQGGYPEAERCRISVGHADELTTDPDIISALSITGNFMFHPCSHGDFLGSILGTGIAR 180
           AIAQGGYPEAERCRISVGHADELT+DPDIISALSITGNF FHPCSHGDFLGSILGTGIAR
Sbjct: 121 AIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAR 180

Query: 181 EKLGDIILQEDKGAQVVIAPELVDFLASSLRKVGNVTVSCTRIPLSALDYEPPKTKTFKT 240
           EKLGDI+LQE+ GAQVVI PELVDFL SSLRKVGNVTVSCTRIPL+AL+YEPPKTKTFKT
Sbjct: 181 EKLGDIMLQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKT 240

Query: 241 IEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTTITKNGTILKTGDIVSVSGKGRLK 300
           IEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWT+ITKNGTILKTGDIVSVSGKGRLK
Sbjct: 241 IEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGRLK 300

Query: 301 IGEINSTKKGKFGVELIRYV 321
           IGEINSTKKGKF VELIRYV
Sbjct: 301 IGEINSTKKGKFAVELIRYV 319

[Close]

BLAST of Sed0026190 vs. ExPASy TrEMBL
Match: A0A6J1J103 (uncharacterized protein LOC111480897 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111480897 PE=4 SV=1)

HSP 1 Score: 541.6 bits (1394), Expect = 2.2e-150
Identity = 285/323 (88.24%), Postives = 298/323 (92.26%), Query Frame = 0


Query: 1   MAATTTSIGALWSLRRAATHSSSFRNHLPVNLNNLSFHGARF---PSSPLRSSGICQLAQ 60
           MAA T SIGALWSLRRAA  SSS R  L VNL+ +SFH ARF   PSSPL SSG+CQL Q
Sbjct: 1   MAAATASIGALWSLRRAA-QSSSLRTPLAVNLSKVSFHEARFPTSPSSPLGSSGMCQLVQ 60

Query: 61  AVKGDIDVLLNGVADKGVIVDVKHILVMVKRSLSRREVLHTNFLTPPVVKESMLAIQKLA 120
           AVKGDIDVLLNGV DKGVIVDVKHILVM KRSLSRREVLHTNFLTPPVVKESMLAI+KLA
Sbjct: 61  AVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIKKLA 120

Query: 121 EVKAIAQGGYPEAERCRISVGHADELTTDPDIISALSITGNFMFHPCSHGDFLGSILGTG 180
           +VKAIAQGGYPEAERCRISVGHADELT+DPD++SALSITGNFMFH C+HGDFLG+ILGTG
Sbjct: 121 DVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFMFHTCTHGDFLGAILGTG 180

Query: 181 IAREKLGDIILQEDKGAQVVIAPELVDFLASSLRKVGNVTVSCTRIPLSALDYEPPKTKT 240
           IAREKLGDIILQE+KGAQVVI PELVDFL SSL KVGNVTVSCTRIPL+ LDYEPPKTKT
Sbjct: 181 IAREKLGDIILQEEKGAQVVIVPELVDFLVSSLHKVGNVTVSCTRIPLTDLDYEPPKTKT 240

Query: 241 FKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTTITKNGTILKTGDIVSVSGKG 300
           FKTIEASLRVDA+ASAGFKISRSKLVD ISSGDVRVNWTTITKNGTILKTGDIVSVSGKG
Sbjct: 241 FKTIEASLRVDALASAGFKISRSKLVDFISSGDVRVNWTTITKNGTILKTGDIVSVSGKG 300

Query: 301 RLKIGEINSTKKGKFGVELIRYV 321
           RLKIGEIN TKKGKF VELIRYV
Sbjct: 301 RLKIGEINPTKKGKFAVELIRYV 322

[Close]

BLAST of Sed0026190 vs. ExPASy TrEMBL
Match: A0A6J1FU11 (uncharacterized protein LOC111446880 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446880 PE=4 SV=1)

HSP 1 Score: 538.1 bits (1385), Expect = 2.5e-149
Identity = 282/323 (87.31%), Postives = 297/323 (91.95%), Query Frame = 0


Query: 1   MAATTTSIGALWSLRRAATHSSSFRNHLPVNLNNLSFHGARF---PSSPLRSSGICQLAQ 60
           MAA T SIGALWSLRRAA  SSSFR  L VNL  +SFH ARF   PSSPL +SG+CQL Q
Sbjct: 1   MAAATASIGALWSLRRAA-RSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQ 60

Query: 61  AVKGDIDVLLNGVADKGVIVDVKHILVMVKRSLSRREVLHTNFLTPPVVKESMLAIQKLA 120
           AVKGDIDVLLNGV DKGVIVDVKHILVM KRSLSRREVLHTNFLTPPVVKESMLAIQKLA
Sbjct: 61  AVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLA 120

Query: 121 EVKAIAQGGYPEAERCRISVGHADELTTDPDIISALSITGNFMFHPCSHGDFLGSILGTG 180
           +VKAIAQGGYPEAERCRISVGHADELT+DPD++SALSITGNF+F  C+HGDFLG+ILGTG
Sbjct: 121 DVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTG 180

Query: 181 IAREKLGDIILQEDKGAQVVIAPELVDFLASSLRKVGNVTVSCTRIPLSALDYEPPKTKT 240
           IAREKLGDIILQE+KGAQVVI PELVDFL SSLRKVGNVTVSCTRIPL+ LDYEPPKTKT
Sbjct: 181 IAREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKT 240

Query: 241 FKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTTITKNGTILKTGDIVSVSGKG 300
           FKTIEASLRVDA+ASAGFKISRSKLVD IS GDVRVNWTTITKNGTILKTGDIVSVSGKG
Sbjct: 241 FKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKG 300

Query: 301 RLKIGEINSTKKGKFGVELIRYV 321
           RLKIGEIN TKKGKF +ELI+YV
Sbjct: 301 RLKIGEINPTKKGKFAIELIKYV 322

[Close]

BLAST of Sed0026190 vs. ExPASy TrEMBL
Match: A0A6J1FSF6 (uncharacterized protein LOC111446880 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446880 PE=4 SV=1)

HSP 1 Score: 535.0 bits (1377), Expect = 2.1e-148
Identity = 283/324 (87.35%), Postives = 298/324 (91.98%), Query Frame = 0


Query: 1   MAATTTSIGALWSLRRAATHSSSFRNHLPVNLNNLSFHGARF---PSSPLRSSGICQLAQ 60
           MAA T SIGALWSLRRAA  SSSFR  L VNL  +SFH ARF   PSSPL +SG+CQL Q
Sbjct: 1   MAAATASIGALWSLRRAA-RSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQ 60

Query: 61  AVKGDIDVLLNGVADKGVIVDVKHILVMVKRSLSRREVLHTNFLTPPVVKESMLAIQKLA 120
           AVKGDIDVLLNGV DKGVIVDVKHILVM KRSLSRREVLHTNFLTPPVVKESMLAIQKLA
Sbjct: 61  AVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLA 120

Query: 121 EVKAIAQGGYPEAERCRISVGHADELTTDPDIISALSITGNFMFHPCSHGDFLGSILGTG 180
           +VKAIAQGGYPEAERCRISVGHADELT+DPD++SALSITGNF+F  C+HGDFLG+ILGTG
Sbjct: 121 DVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTG 180

Query: 181 IAREKLGDIILQEDKGAQVVIAPELVDFLASSLRKVGNVTVSCTRIPLSALDYEPPKTKT 240
           IAREKLGDIILQE+KGAQVVI PELVDFL SSLRKVGNVTVSCTRIPL+ LDYEPPKTKT
Sbjct: 181 IAREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKT 240

Query: 241 FKTIEASLRVDAIASAGFKISRSKLVDLISS-GDVRVNWTTITKNGTILKTGDIVSVSGK 300
           FKTIEASLRVDA+ASAGFKISRSKLVD ISS GDVRVNWTTITKNGTILKTGDIVSVSGK
Sbjct: 241 FKTIEASLRVDALASAGFKISRSKLVDFISSGGDVRVNWTTITKNGTILKTGDIVSVSGK 300

Query: 301 GRLKIGEINSTKKGKFGVELIRYV 321
           GRLKIGEIN TKKGKF +ELI+YV
Sbjct: 301 GRLKIGEINPTKKGKFAIELIKYV 323

[Close]

BLAST of Sed0026190 vs. TAIR 10
Match: AT1G53120.1 (RNA-binding S4 domain-containing protein )

HSP 1 Score: 416.0 bits (1068), Expect = 2.7e-116
Identity = 210/317 (66.25%), Postives = 259/317 (81.70%), Query Frame = 0


Query: 6   TSIGALWSLRRAATHSSSFRNHLPVNLNNLSFHGARFPSSPLRSSGI--CQLAQAVKGDI 65
           TS+   W + R A  S +  + L  N   L  + +   S PLR S +  C  A+A+KGD+
Sbjct: 4   TSLAPPWVILRLAFRSVAASSCLHTNQKTLITNLSIPTSFPLRQSALRRCYSAEAIKGDV 63

Query: 66  DVLLNGVADKGVIVDVKHILVMVKRSLSRREVLHTNFLTPPVVKESMLAIQKLAEVKAIA 125
           D LL GV D+ V  +VK IL M +R+ S+REVLHT+FLTPP+VKES+  ++K A+VK +A
Sbjct: 64  DFLLKGVGDQAVAKEVKQILEMARRASSKREVLHTDFLTPPIVKESVSLLEKFADVKIVA 123

Query: 126 QGGYPEAERCRISVGHADELTTDPDIISALSITGNFMFHPCSHGDFLGSILGTGIAREKL 185
           QGGYPEAERCRIS+GH D LT+DPDI++ALSITGNF F PCSHGDFLG+ILGTGI+REKL
Sbjct: 124 QGGYPEAERCRISIGHPDVLTSDPDIVAALSITGNFGFQPCSHGDFLGAILGTGISREKL 183

Query: 186 GDIILQEDKGAQVVIAPELVDFLASSLRKVGNVTVSCTRIPLSALDYEPPKTKTFKTIEA 245
           GDI++QE+KGAQV+I PELVDF+ ++L KVGNV V+C++IPL AL+YEPP+T +FKT+EA
Sbjct: 184 GDILIQEEKGAQVLIVPELVDFVVTALDKVGNVGVTCSKIPLLALEYEPPRTNSFKTVEA 243

Query: 246 SLRVDAIASAGFKISRSKLVDLISSGDVRVNWTTITKNGTILKTGDIVSVSGKGRLKIGE 305
           SLR+DA+ASAGFKISRSKLVDLISS DVRVNW T+TKNGTI+KTGD+VSVSGKGRLKIGE
Sbjct: 244 SLRIDAVASAGFKISRSKLVDLISSKDVRVNWATVTKNGTIVKTGDVVSVSGKGRLKIGE 303

Query: 306 INSTKKGKFGVELIRYV 321
           IN TKKGKF VE+IRY+
Sbjct: 304 INETKKGKFAVEIIRYL 320

The following BLAST results are available for this feature:

BLAST of Sed0026190 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456024.1	1.7e-152	90.00	PREDICTED: putative RNA-binding protein YlmH isoform X2 [Cucumis melo]	[more]
XP_038899605.1	6.5e-152	90.57	putative RNA-binding protein YlmH [Benincasa hispida]	[more]
XP_004146247.1	6.5e-152	90.31	uncharacterized protein LOC101221944 [Cucumis sativus] >XP_031738291.1 uncharact...	[more]
XP_022981895.1	4.6e-150	88.24	uncharacterized protein LOC111480897 isoform X1 [Cucurbita maxima]	[more]
KAG6600381.1	7.9e-150	87.31	hypothetical protein SDJN03_05614, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Sed0026190 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P71020	1.8e-19	30.67	Putative RNA-binding protein YlmH OS=Bacillus subtilis (strain 168) OX=224308 GN...	[more]

BLAST of Sed0026190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C3I2	8.2e-153	90.00	putative RNA-binding protein YlmH isoform X2 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A0A0LC56	3.1e-152	90.31	S4 RNA-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G233...	[more]
A0A6J1J103	2.2e-150	88.24	uncharacterized protein LOC111480897 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1FU11	2.5e-149	87.31	uncharacterized protein LOC111446880 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1FSF6	2.1e-148	87.35	uncharacterized protein LOC111446880 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Sed0026190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G53120.1	2.7e-116	66.25	RNA-binding S4 domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002942	RNA-binding S4 domain	SMART	SM00363	s4_6	coord: 245..305 e-value: 1.7E-10 score: 50.9
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 246..291 e-value: 1.2E-7 score: 31.3
IPR002942	RNA-binding S4 domain	CDD	cd00165	S4	coord: 246..300 e-value: 1.82013E-10 score: 54.1778
IPR036986	RNA-binding S4 domain superfamily	GENE3D	3.10.290.10		coord: 237..296 e-value: 1.9E-7 score: 32.4
IPR017506	Photosystem II S4	TIGRFAM	TIGR03069	TIGR03069	coord: 78..318 e-value: 2.1E-94 score: 313.4
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 147..228 e-value: 3.4E-22 score: 80.1
IPR040591	YlmH, putative RNA-binding domain	PFAM	PF17774	YlmH_RBD	coord: 151..225 e-value: 3.0E-14 score: 53.1
None	No IPR available	PANTHER	PTHR32219	RNA-BINDING PROTEIN YLMH-RELATED	coord: 51..320
None	No IPR available	PANTHER	PTHR32219:SF3	RNA-BINDING PROTEIN YLMH-RELATED	coord: 51..320
None	No IPR available	PROSITE	PS50889	S4	coord: 245..305 score: 13.403615
None	No IPR available	SUPERFAMILY	55174	Alpha-L RNA-binding motif	coord: 128..307

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0026190.1	Sed0026190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding