Sed0026034 (gene) Chayote v1

Overview


Name	Sed0026034
Type	gene
Organism	Sechium edule (Chayote v1)
Description	DNA-directed RNA polymerase subunit beta
Location	LG12: 32946151 .. 32946867 (-)
RNA-Seq Expression	Sed0026034
Synteny	Sed0026034

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAATAATGGTATTGTACCATACAAAAAAGGATGTGGCTATAGTTAACTTTATGGAAAATTATTTAAGACTTTTCACAATTGTGTCTCGTGATAGGAAATGTCGATCGTAGATTCAAGTTTTATCTTCACGGGTCTCTCTGCCATACCAAATCCCCAAATTTTCAACAACAACAATGGCCGAAAACTCAGAACCACATCGGCAAAACGAGCAGACGATTCCGATTCCGATTCATCGTCGCAAGCTAGTCAACTCAAGTTTCCATCGCTGATCGTTTCGAATCCACTTCTCGCCCGATCTGTCGTTTCGGTACTCGGATTAGGGTTCGTCGATGCAGGGTATGTAATTTTTGCTTGATTTCGTCTCGTAATTTCGATCTTTTTGTTTCTGTTTCTACTGAAATTGAAGTCGAATTAGGGCTTGGAATGGTTAGGTACAGTGGAGATTGGTCTAGAATTGGAGCGATTTCGAAGGAGAATGAAGATTTGTTGAAGATTGGCGCTTTCTTCGTGGTTCCGTTTTGCGTATTTCTCATTTTTTCTTTCTCTGAAAAGGCGGAGTCCTCCTAGCTGTACTCCACTACCAAGCTTACATTATGTTTATGGCTGTTTTTCATATTTTTGGAAACTATGTTTTTATTTTTAAAATAGATGAAGGTAAACTACTATATTTGGCAGTTAAAAATGGAGAATTATGCCAAAAATTCGCTTGGAGCTA

mRNA sequence

AAAAATAATGGTATTGTACCATACAAAAAAGGATGTGGCTATAGTTAACTTTATGGAAAATTATTTAAGACTTTTCACAATTGTGTCTCGTGATAGGAAATGTCGATCGTAGATTCAAGTTTTATCTTCACGGGTCTCTCTGCCATACCAAATCCCCAAATTTTCAACAACAACAATGGCCGAAAACTCAGAACCACATCGGCAAAACGAGCAGACGATTCCGATTCCGATTCATCGTCGCAAGCTAGTCAACTCAAGTTTCCATCGCTGATCGTTTCGAATCCACTTCTCGCCCGATCTGTCGTTTCGGTACTCGGATTAGGGTTCGTCGATGCAGGGTACAGTGGAGATTGGTCTAGAATTGGAGCGATTTCGAAGGAGAATGAAGATTTGTTGAAGATTGGCGCTTTCTTCGTGGTTCCGTTTTGCGTATTTCTCATTTTTTCTTTCTCTGAAAAGGCGGAGTCCTCCTAGCTGTACTCCACTACCAAGCTTACATTATGTTTATGGCTGTTTTTCATATTTTTGGAAACTATGTTTTTATTTTTAAAATAGATGAAGGTAAACTACTATATTTGGCAGTTAAAAATGGAGAATTATGCCAAAAATTCGCTTGGAGCTA

Coding sequence (CDS)

ATGTCGATCGTAGATTCAAGTTTTATCTTCACGGGTCTCTCTGCCATACCAAATCCCCAAATTTTCAACAACAACAATGGCCGAAAACTCAGAACCACATCGGCAAAACGAGCAGACGATTCCGATTCCGATTCATCGTCGCAAGCTAGTCAACTCAAGTTTCCATCGCTGATCGTTTCGAATCCACTTCTCGCCCGATCTGTCGTTTCGGTACTCGGATTAGGGTTCGTCGATGCAGGGTACAGTGGAGATTGGTCTAGAATTGGAGCGATTTCGAAGGAGAATGAAGATTTGTTGAAGATTGGCGCTTTCTTCGTGGTTCCGTTTTGCGTATTTCTCATTTTTTCTTTCTCTGAAAAGGCGGAGTCCTCCTAG

Protein sequence

MSIVDSSFIFTGLSAIPNPQIFNNNNGRKLRTTSAKRADDSDSDSSSQASQLKFPSLIVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAISKENEDLLKIGAFFVVPFCVFLIFSFSEKAESS

Homology

[Close]

BLAST of Sed0026034 vs. NCBI nr
Match: XP_023531156.1 (uncharacterized protein LOC111793484 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 185.7 bits (470), Expect = 2.5e-43
Identity = 97/124 (78.23%), Postives = 109/124 (87.90%), Query Frame = 0


Query: 1   MSIVDSSFIFTGLSAIPNPQIFNNNNGRKLRTTSAKRADDSDSDSSSQASQLKFPSLIVS 60
           M I DS+FIFTGLSA+P+P + +NNN RK  TTSAKR  DSDSDS S ++QLKFPSL V+
Sbjct: 1   MPIADSTFIFTGLSALPHPLLLSNNNARKFGTTSAKRTGDSDSDSIS-STQLKFPSLRVA 60

Query: 61  NPLLARSVVSVLGLGFVDAGYSGDWSRIGAISKENEDLLKIGAFFVVPFCVFLIFSFSEK 120
           NPLLARSVV+VLGLGFVDAGYSGDWSRIGAI+KE EDLLKIGAF VVPFCVFLIFSFSE+
Sbjct: 61  NPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGAFLVVPFCVFLIFSFSEQ 120

Query: 121 AESS 125
            +SS
Sbjct: 121 TDSS 123

[Close]

BLAST of Sed0026034 vs. NCBI nr
Match: XP_023004836.1 (uncharacterized protein LOC111498016 [Cucurbita maxima])

HSP 1 Score: 183.7 bits (465), Expect = 9.5e-43
Identity = 98/124 (79.03%), Postives = 106/124 (85.48%), Query Frame = 0


Query: 1   MSIVDSSFIFTGLSAIPNPQIFNNNNGRKLRTTSAKRADDSDSDSSSQASQLKFPSLIVS 60
           M I DSSFIFTGLSA+P+P I +NNN RK  TTSAKR  DSDS SS   +QLKFPSL VS
Sbjct: 1   MPIADSSFIFTGLSALPHPLILSNNNARKFGTTSAKRTGDSDSISS---TQLKFPSLRVS 60

Query: 61  NPLLARSVVSVLGLGFVDAGYSGDWSRIGAISKENEDLLKIGAFFVVPFCVFLIFSFSEK 120
           NPLLARSVV+VLGLGFVDAGYSGDWSRIGAI+KE ED LKIGAF VVPFCVFLIFSFSE+
Sbjct: 61  NPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDFLKIGAFLVVPFCVFLIFSFSEQ 120

Query: 121 AESS 125
            +SS
Sbjct: 121 TDSS 121

[Close]

BLAST of Sed0026034 vs. NCBI nr
Match: XP_022933449.1 (uncharacterized protein LOC111440861 [Cucurbita moschata] >KAG6587801.1 hypothetical protein SDJN03_16366, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035696.1 hypothetical protein SDJN02_02494, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 183.3 bits (464), Expect = 1.2e-42
Identity = 97/124 (78.23%), Postives = 107/124 (86.29%), Query Frame = 0


Query: 1   MSIVDSSFIFTGLSAIPNPQIFNNNNGRKLRTTSAKRADDSDSDSSSQASQLKFPSLIVS 60
           M I DSSFIFTGLSA+P+P + +NNN RK  TTSAKR  DSDS SS   +QLKFPSL V+
Sbjct: 1   MPIADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRTGDSDSISS---TQLKFPSLRVA 60

Query: 61  NPLLARSVVSVLGLGFVDAGYSGDWSRIGAISKENEDLLKIGAFFVVPFCVFLIFSFSEK 120
           NPLLARSVV+VLGLGFVDAGYSGDWSRIGAI+KE EDLLKIGAF VVPFCVFLIFSFSE+
Sbjct: 61  NPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGAFLVVPFCVFLIFSFSEQ 120

Query: 121 AESS 125
            +SS
Sbjct: 121 TDSS 121

[Close]

BLAST of Sed0026034 vs. NCBI nr
Match: XP_008443827.1 (PREDICTED: uncharacterized protein LOC103487329 [Cucumis melo])

HSP 1 Score: 177.9 bits (450), Expect = 5.2e-41
Identity = 93/121 (76.86%), Postives = 105/121 (86.78%), Query Frame = 0


Query: 1   MSIVDSSFIFTGLSAIPNPQIFN--NNNGRKLRTTSAKRADDSDSDSSSQASQLKFPSLI 60
           M++VDSSFIF G+SA+P+P + N  NNNGRK   TSAKR  DSDS SS+Q +Q KFPSL 
Sbjct: 1   MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPSLR 60

Query: 61  VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAISKENEDLLKIGAFFVVPFCVFLIFSFS 120
           VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAI+KE E+LLKIGAF VVPFCVFL+FSFS
Sbjct: 61  VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGAFLVVPFCVFLVFSFS 120

[Close]

BLAST of Sed0026034 vs. NCBI nr
Match: XP_004146667.1 (uncharacterized protein LOC101206545 [Cucumis sativus] >KGN65187.1 hypothetical protein Csa_020133 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 7.5e-40
Identity = 93/121 (76.86%), Postives = 103/121 (85.12%), Query Frame = 0


Query: 1   MSIVDSSFIFTGLSAIPNPQIFNNNNGRKLRTTSAKRADDSDSD--SSSQASQLKFPSLI 60
           M++VDSSFIF G S +P+P + NNNNGRK   TSAKR  DSDSD  SS+Q +Q KFPSL 
Sbjct: 1   MAMVDSSFIFIGFSPVPHP-LLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLR 60

Query: 61  VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAISKENEDLLKIGAFFVVPFCVFLIFSFS 120
           VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAI+KE EDLLKIGA  VVPFCVFL+FSFS
Sbjct: 61  VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGALLVVPFCVFLVFSFS 120

[Close]

BLAST of Sed0026034 vs. ExPASy TrEMBL
Match: A0A6J1KT82 (uncharacterized protein LOC111498016 OS=Cucurbita maxima OX=3661 GN=LOC111498016 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.6e-43
Identity = 98/124 (79.03%), Postives = 106/124 (85.48%), Query Frame = 0


Query: 1   MSIVDSSFIFTGLSAIPNPQIFNNNNGRKLRTTSAKRADDSDSDSSSQASQLKFPSLIVS 60
           M I DSSFIFTGLSA+P+P I +NNN RK  TTSAKR  DSDS SS   +QLKFPSL VS
Sbjct: 1   MPIADSSFIFTGLSALPHPLILSNNNARKFGTTSAKRTGDSDSISS---TQLKFPSLRVS 60

Query: 61  NPLLARSVVSVLGLGFVDAGYSGDWSRIGAISKENEDLLKIGAFFVVPFCVFLIFSFSEK 120
           NPLLARSVV+VLGLGFVDAGYSGDWSRIGAI+KE ED LKIGAF VVPFCVFLIFSFSE+
Sbjct: 61  NPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDFLKIGAFLVVPFCVFLIFSFSEQ 120

Query: 121 AESS 125
            +SS
Sbjct: 121 TDSS 121

[Close]

BLAST of Sed0026034 vs. ExPASy TrEMBL
Match: A0A6J1EZT4 (uncharacterized protein LOC111440861 OS=Cucurbita moschata OX=3662 GN=LOC111440861 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 6.0e-43
Identity = 97/124 (78.23%), Postives = 107/124 (86.29%), Query Frame = 0


Query: 1   MSIVDSSFIFTGLSAIPNPQIFNNNNGRKLRTTSAKRADDSDSDSSSQASQLKFPSLIVS 60
           M I DSSFIFTGLSA+P+P + +NNN RK  TTSAKR  DSDS SS   +QLKFPSL V+
Sbjct: 1   MPIADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRTGDSDSISS---TQLKFPSLRVA 60

Query: 61  NPLLARSVVSVLGLGFVDAGYSGDWSRIGAISKENEDLLKIGAFFVVPFCVFLIFSFSEK 120
           NPLLARSVV+VLGLGFVDAGYSGDWSRIGAI+KE EDLLKIGAF VVPFCVFLIFSFSE+
Sbjct: 61  NPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGAFLVVPFCVFLIFSFSEQ 120

Query: 121 AESS 125
            +SS
Sbjct: 121 TDSS 121

[Close]

BLAST of Sed0026034 vs. ExPASy TrEMBL
Match: A0A1S3B903 (uncharacterized protein LOC103487329 OS=Cucumis melo OX=3656 GN=LOC103487329 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.5e-41
Identity = 93/121 (76.86%), Postives = 105/121 (86.78%), Query Frame = 0


Query: 1   MSIVDSSFIFTGLSAIPNPQIFN--NNNGRKLRTTSAKRADDSDSDSSSQASQLKFPSLI 60
           M++VDSSFIF G+SA+P+P + N  NNNGRK   TSAKR  DSDS SS+Q +Q KFPSL 
Sbjct: 1   MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPSLR 60

Query: 61  VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAISKENEDLLKIGAFFVVPFCVFLIFSFS 120
           VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAI+KE E+LLKIGAF VVPFCVFL+FSFS
Sbjct: 61  VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGAFLVVPFCVFLVFSFS 120

[Close]

BLAST of Sed0026034 vs. ExPASy TrEMBL
Match: A0A0A0LWH4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257930 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.6e-40
Identity = 93/121 (76.86%), Postives = 103/121 (85.12%), Query Frame = 0


Query: 1   MSIVDSSFIFTGLSAIPNPQIFNNNNGRKLRTTSAKRADDSDSD--SSSQASQLKFPSLI 60
           M++VDSSFIF G S +P+P + NNNNGRK   TSAKR  DSDSD  SS+Q +Q KFPSL 
Sbjct: 1   MAMVDSSFIFIGFSPVPHP-LLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLR 60

Query: 61  VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAISKENEDLLKIGAFFVVPFCVFLIFSFS 120
           VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAI+KE EDLLKIGA  VVPFCVFL+FSFS
Sbjct: 61  VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGALLVVPFCVFLVFSFS 120

[Close]

BLAST of Sed0026034 vs. ExPASy TrEMBL
Match: A0A6J1C0R6 (uncharacterized protein LOC111007301 OS=Momordica charantia OX=3673 GN=LOC111007301 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.3e-34
Identity = 82/122 (67.21%), Postives = 99/122 (81.15%), Query Frame = 0


Query: 3   IVDSSFIFTGLSAIPNPQIFNNNNGRKLRTTSAKRADDSDSDSSSQASQLKFPSLIVSNP 62
           + DS+FIF+G SA+ +  +FN NN R  RT  AKR DDS +  S+Q +Q +FPSL V NP
Sbjct: 1   MADSTFIFSGPSAV-SRSLFNVNNRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVPNP 60

Query: 63  LLARSVVSVLGLGFVDAGYSGDWSRIGAISKENEDLLKIGAFFVVPFCVFLIFSFSEKAE 122
           L+AR VVSVLGLGFVDAGYSGDWSRIGAI+KE+EDLLKIGAF VVPFCVFLI SF+++ +
Sbjct: 61  LVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVVPFCVFLISSFAKQTD 120

Query: 123 SS 125
           SS
Sbjct: 121 SS 121

[Close]

BLAST of Sed0026034 vs. TAIR 10
Match: AT4G30845.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 90.1 bits (222), Expect = 1.3e-18
Identity = 53/100 (53.00%), Postives = 65/100 (65.00%), Query Frame = 0


Query: 26  NGRKLR------TTSAKRADDSD-SDSSSQASQLKFPSLIVSNPLLARSVVSVLGLGFVD 85
           N  KLR      T  +KR D S+ S+      ++K P     N ++ARS ++VL LGF+D
Sbjct: 15  NDNKLRSFANGVTIMSKRRDFSEKSNEERPILRIKVP-----NTIVARSAIAVLSLGFID 74

Query: 86  AGYSGDWSRIGAISKENEDLLKIGAFFVVPFCVFLIFSFS 119
           AGYSGDWSRIG ISKE E+LLKI AF VVP C+FL  SFS
Sbjct: 75  AGYSGDWSRIGVISKETEELLKIAAFLVVPLCIFLALSFS 109

The following BLAST results are available for this feature:

BLAST of Sed0026034 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023531156.1	2.5e-43	78.23	uncharacterized protein LOC111793484 [Cucurbita pepo subsp. pepo]	[more]
XP_023004836.1	9.5e-43	79.03	uncharacterized protein LOC111498016 [Cucurbita maxima]	[more]
XP_022933449.1	1.2e-42	78.23	uncharacterized protein LOC111440861 [Cucurbita moschata] >KAG6587801.1 hypothet...	[more]
XP_008443827.1	5.2e-41	76.86	PREDICTED: uncharacterized protein LOC103487329 [Cucumis melo]	[more]
XP_004146667.1	7.5e-40	76.86	uncharacterized protein LOC101206545 [Cucumis sativus] >KGN65187.1 hypothetical ...	[more]

BLAST of Sed0026034 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0026034 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KT82	4.6e-43	79.03	uncharacterized protein LOC111498016 OS=Cucurbita maxima OX=3661 GN=LOC111498016...	[more]
A0A6J1EZT4	6.0e-43	78.23	uncharacterized protein LOC111440861 OS=Cucurbita moschata OX=3662 GN=LOC1114408...	[more]
A0A1S3B903	2.5e-41	76.86	uncharacterized protein LOC103487329 OS=Cucumis melo OX=3656 GN=LOC103487329 PE=...	[more]
A0A0A0LWH4	3.6e-40	76.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257930 PE=4 SV=1	[more]
A0A6J1C0R6	1.3e-34	67.21	uncharacterized protein LOC111007301 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]

BLAST of Sed0026034 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30845.1	1.3e-18	53.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..51
None	No IPR available	PANTHER	PTHR38389	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA	coord: 1..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0026034.1	Sed0026034.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane