Sed0026026 (gene) Chayote v1

Overview


Name	Sed0026026
Type	gene
Organism	Sechium edule (Chayote v1)
Description	TCP transcription factor
Location	LG09: 3297146 .. 3299629 (-)
RNA-Seq Expression	Sed0026026
Synteny	Sed0026026

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGAGAAGAGTATTTTTAGATTTGGTTCTTCAGGACTTGTCTACAATTTGTATTGATAGGTTAGTGAAAAAATTTGCTTGCAACTTCGTTTTTTATGGAAGATTTGAGGAAAAATCCTAGTAAAGACCATGGATTATTCTTAAGCCCATCATTCAAACTTTTTTTTTTTTTTTTTTAATTTGTATAGGGTTTTTATTCTTTATGGGGTTTAAATCTTGCCGAAGTTGGATATGTGTAGTAGCTCAAACAACGAAGTTTCTTCCTCGAATTCCTCCATGAAAACCAAATTTCAAAAGTTTAACAATGGAGCTTTTTTTTCTTGGCGTGTGATGGAGAGATAAACCAGTGACTCTTTATAGCTTAACGATGAGTCCAATTGAACTTTTATGATAGTTGAGGGACCAAAATGGTAATCCAAAAAAATAATATAAAATAAATATTATTTACCATATCTACCCTCCAAAACATTAATCGCCAAACAACTATGTCATATATCAAAATCACTCAACTTCTTCCTCCCTTTCCACCTTCTCTCCTCTCCTCTTTTCCACACAAAAACCCAATCACCTCCTGAGAGTAAGATAATCGGCAATAGTCATTCAATCGTGAATCGAGTGATGAGTTCAATCGATAGACGAAGGATACACAAATATAAAAAAGAAGAAGAAAGAACTCAATGATGGAGGACCCCCATCTCTTGTCTTTATCCTCTCATCAAAAAATCCCATCCTCTCATAAACCCCCCCACTAGTCCACAAAGAGGAACCCACCAATTCCTTTGGGTCCTCCCCTCCCCATATCCCCACAACAAATCAACAAACCAAATCAACAAACATGGCAGATCACAACAACAACAACAAGAAGATCAGTCAGGGACAAGCATCATCATCATCAGACACAAAGGAATTGAACATCAAAACCACAAACACAGAGCAATTAGCTCCAAAACGTACCTCCAACAAGGACCGGCACAAGAAGGTGGACGGGCGCGGGCGGAGGATCCGAATGCCGGCCCTGTGCGCGGCCCGCGTGTTCCAACTGACCCGCGAGTTGGGCCACAAGACCGACGGCGAGACCATCCAGTGGCTGCTCCAGCAGGCCGAGCCCTCCATCTTCGCCGCCACCGGCTCCGGCACCATCCCCGCCTCCGCCCTCTCCGCCGCCGACCACCACTCCGCCGTGACCCGGGGGAACTGGGCCGGGCTGTGGACCGGGTTCGAGTACCCGGGGCCGATCGTGCCGAAGCTAGGGCTCCATGGGCTGGAATTGGGGCTTTCGCAGGAAGGGAATCATAATAATAGTAATAATCTCAGAGGAGGGATGTTGAATTACGCGCAGATTTACCAGCAATTTGGGCAATTTGGGCAATTAGGGCAGAATCCGCCATTGGAGATGGATCAAGCTCCTGCTAAAGACGAATCCAGATGATTTGGGGATTTGGGGATTTCTAGGGCTATAAAATATATTAGGGGTTTTTAAATTGTGTAATCAAATGAAGATGATGAAGATTTTATGATTTTCAGGTAATTTTTTTTCCCCCTCATTATAATTTTATGGACTCTTTTTTTTTTTTAATTATATTTATAGAAAGCATAAAAATGGTTCTTACTTCTTCTTCCTTTCAAAATAATAAATTGGATTTACAAAAAGAAAATTTTATTTTGGAATTTCAAATTTTTGGGTTGTTTTTTGGGAGATTTTCAACAAGCAAATTTATAATTTAAAATTTTGGGGTTGTTTTTGAGAGATTTTCAACAAGCAAATTTTAAATTAAATTAAAAAAAAAATCAAGTTAGGAAATTGTTGTAAATGATAAATTATAGTATTCGTATTTTAATTAGATTAATTTTTAATAAAATATTTAGTATTTAATTTTTTTGAAATGGATAAAGTTTTGAAATCTATCAATTTAGTTGATTCATTTAATTGGAGTATTTTGTTACCAATTTAGGGAAGATATTTGGATGTATTGTTCATGATTTTATTTTTATGTATAATTCAAAATATATAATTGAAGTTTTTCTTTTCAAAGGTAAATAAAAGTTTTAGAAGAAAAGGGAAATATGGTTAATAAAGAATTTAATTTCCACGTAATTCTCGAACAACACCTTCACTTTTACAGACCCAAATGCAAACCCAGTAAAGGAAGTGACTATTTCAAAATAATAATCTAGTGAATATATTAGCAAATAACAATAATGGGAAACCAGTTAAAATAAAATAAAATAATAAAAATAGCTCAATTGGATGATATATGATTTTTAAATTTTTTTTTAAAAGTAATGATATATGATCTTTTTTTTCCAATAACGAAGTTATAAGTTTAAATCTAAGAATTAATAATAATAATAATAATAATAAAATCTTATATTTTTTTAATTGGTTTTGGATTTTAGTGTTTGATTTGTAACATGCAGGAGAAGGTTGAGGAGAAGTGTGATTTCAGTGCAAGATTGATTTGACTTTCTTTTCTTCAAATTTGAG

mRNA sequence

GGGAGAAGAGTATTTTTAGATTTGGTTCTTCAGGACTTGTCTACAATTTGTATTGATAGGTTAGTGAAAAAATTTGCTTGCAACTTCGTTTTTTATGGAAGATTTGAGGAAAAATCCTAGTAAAGACCATGGATTATTCTTAAGCCCATCATTCAAACTTTTTTTTTTTTTTTTTTAATTTGTATAGGGTTTTTATTCTTTATGGGGTTTAAATCTTGCCGAAGTTGGATATGTGTAGTAGCTCAAACAACGAAGTTTCTTCCTCGAATTCCTCCATGAAAACCAAATTTCAAAAGTTTAACAATGGAGCTTTTTTTTCTTGGCGTGTGATGGAGAGATAAACCAGTGACTCTTTATAGCTTAACGATGAGTCCAATTGAACTTTTATGATAGTTGAGGGACCAAAATGGTAATCCAAAAAAATAATATAAAATAAATATTATTTACCATATCTACCCTCCAAAACATTAATCGCCAAACAACTATGTCATATATCAAAATCACTCAACTTCTTCCTCCCTTTCCACCTTCTCTCCTCTCCTCTTTTCCACACAAAAACCCAATCACCTCCTGAGAGTAAGATAATCGGCAATAGTCATTCAATCGTGAATCGAGTGATGAGTTCAATCGATAGACGAAGGATACACAAATATAAAAAAGAAGAAGAAAGAACTCAATGATGGAGGACCCCCATCTCTTGTCTTTATCCTCTCATCAAAAAATCCCATCCTCTCATAAACCCCCCCACTAGTCCACAAAGAGGAACCCACCAATTCCTTTGGGTCCTCCCCTCCCCATATCCCCACAACAAATCAACAAACCAAATCAACAAACATGGCAGATCACAACAACAACAACAAGAAGATCAGTCAGGGACAAGCATCATCATCATCAGACACAAAGGAATTGAACATCAAAACCACAAACACAGAGCAATTAGCTCCAAAACGTACCTCCAACAAGGACCGGCACAAGAAGGTGGACGGGCGCGGGCGGAGGATCCGAATGCCGGCCCTGTGCGCGGCCCGCGTGTTCCAACTGACCCGCGAGTTGGGCCACAAGACCGACGGCGAGACCATCCAGTGGCTGCTCCAGCAGGCCGAGCCCTCCATCTTCGCCGCCACCGGCTCCGGCACCATCCCCGCCTCCGCCCTCTCCGCCGCCGACCACCACTCCGCCGTGACCCGGGGGAACTGGGCCGGGCTGTGGACCGGGTTCGAGTACCCGGGGCCGATCGTGCCGAAGCTAGGGCTCCATGGGCTGGAATTGGGGCTTTCGCAGGAAGGGAATCATAATAATAGTAATAATCTCAGAGGAGGGATGTTGAATTACGCGCAGATTTACCAGCAATTTGGGCAATTTGGGCAATTAGGGCAGAATCCGCCATTGGAGATGGATCAAGCTCCTGCTAAAGACGAATCCAGATGATTTGGGGATTTGGGGATTTCTAGGGCTATAAAATATATTAGGGGTTTTTAAATTGTGTAATCAAATGAAGATGATGAAGATTTTATGATTTTCAGGAGAAGGTTGAGGAGAAGTGTGATTTCAGTGCAAGATTGATTTGACTTTCTTTTCTTCAAATTTGAG

Coding sequence (CDS)

ATGGCAGATCACAACAACAACAACAAGAAGATCAGTCAGGGACAAGCATCATCATCATCAGACACAAAGGAATTGAACATCAAAACCACAAACACAGAGCAATTAGCTCCAAAACGTACCTCCAACAAGGACCGGCACAAGAAGGTGGACGGGCGCGGGCGGAGGATCCGAATGCCGGCCCTGTGCGCGGCCCGCGTGTTCCAACTGACCCGCGAGTTGGGCCACAAGACCGACGGCGAGACCATCCAGTGGCTGCTCCAGCAGGCCGAGCCCTCCATCTTCGCCGCCACCGGCTCCGGCACCATCCCCGCCTCCGCCCTCTCCGCCGCCGACCACCACTCCGCCGTGACCCGGGGGAACTGGGCCGGGCTGTGGACCGGGTTCGAGTACCCGGGGCCGATCGTGCCGAAGCTAGGGCTCCATGGGCTGGAATTGGGGCTTTCGCAGGAAGGGAATCATAATAATAGTAATAATCTCAGAGGAGGGATGTTGAATTACGCGCAGATTTACCAGCAATTTGGGCAATTTGGGCAATTAGGGCAGAATCCGCCATTGGAGATGGATCAAGCTCCTGCTAAAGACGAATCCAGATGA

Protein sequence

MADHNNNNKKISQGQASSSSDTKELNIKTTNTEQLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIFAATGSGTIPASALSAADHHSAVTRGNWAGLWTGFEYPGPIVPKLGLHGLELGLSQEGNHNNSNNLRGGMLNYAQIYQQFGQFGQLGQNPPLEMDQAPAKDESR

Homology

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BLAST of Sed0026026 vs. NCBI nr
Match: XP_038876191.1 (transcription factor TCP20-like [Benincasa hispida])

HSP 1 Score: 203.8 bits (517), Expect = 1.4e-48
Identity = 148/282 (52.48%), Postives = 160/282 (56.74%), Query Frame = 0


Query: 1   MADH---NNNNKKISQGQASS-----SSDTKELNI-------KTTNTEQLAPKRTSNKDR 60
           MADH   NNNN K S   ASS     SSD K+ +I          N +QLAPKRTSNKDR
Sbjct: 1   MADHNNNNNNNNKPSVAAASSTPITPSSDIKDFSIIISNKDQNNNNNKQLAPKRTSNKDR 60

Query: 61  HKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIFAATGSGTIPAS 120
           HKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSI AATGSGTIPAS
Sbjct: 61  HKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPAS 120

Query: 121 ALSAA-----DHHS-------------AVTRGNWA---------------------GLWT 180
           AL AA     DH S             AV R NWA                     G+ T
Sbjct: 121 ALHAAGVSLSDHDSSVSVSATLTPKIDAVPRPNWAMMGTNLNRSHMATTGFWPSLGGIGT 180

Query: 181 GF--EYPGPIVPKLGLH--------------------------GLELGLSQEGNHNNSNN 198
           GF  E PG I+PK G H                          GLELGLSQ+G     NN
Sbjct: 181 GFVSENPGSIMPKFGFHGFEFQGMNLGSVNFPTIIGNQHQQIPGLELGLSQDG-----NN 240

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BLAST of Sed0026026 vs. NCBI nr
Match: XP_008459878.1 (PREDICTED: transcription factor TCP20-like [Cucumis melo] >XP_016902500.1 PREDICTED: transcription factor TCP20-like [Cucumis melo] >KAA0039830.1 transcription factor TCP20-like [Cucumis melo var. makuwa] >TYK24669.1 transcription factor TCP20-like [Cucumis melo var. makuwa])

HSP 1 Score: 192.2 bits (487), Expect = 4.2e-45
Identity = 145/298 (48.66%), Postives = 157/298 (52.68%), Query Frame = 0


Query: 1   MADHNNNNKK--------ISQGQASS----------SSDTKELNI-------------KT 60
           MAD NNNN           S   +SS          SSD K+  +               
Sbjct: 1   MADQNNNNNNNNKHHPLLPSPATSSSPLTTPPLPTPSSDIKDFTLIISNKDQNNSNSNSN 60

Query: 61  TNTEQLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQA 120
            N +QLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQA
Sbjct: 61  NNNKQLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQA 120

Query: 121 EPSIFAATGSGTIPASALSAA-----DHHS-------------AVTRGNWA--------- 180
           EPSI AATGSGTIPASAL AA     DH S             AV R NWA         
Sbjct: 121 EPSIIAATGSGTIPASALHAAGVSLSDHDSSVSVSASLTPKIEAVPRTNWAMMGANLSRS 180

Query: 181 ------------GLWTGF--EYPGPIVPKLGLH--------------------------G 198
                       G+ TGF  E PG I+PK G H                          G
Sbjct: 181 HMATPGFWPSLGGIGTGFVSENPGSIMPKFGFHGFEFQGMNLGSVNFPGMIGNQHQQIPG 240

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BLAST of Sed0026026 vs. NCBI nr
Match: XP_011656799.1 (transcription factor TCP20 [Cucumis sativus] >XP_031743603.1 transcription factor TCP20 [Cucumis sativus] >KGN46444.1 hypothetical protein Csa_005032 [Cucumis sativus])

HSP 1 Score: 188.0 bits (476), Expect = 8.0e-44
Identity = 143/296 (48.31%), Postives = 156/296 (52.70%), Query Frame = 0


Query: 1   MADHNNNNKK------ISQGQASS----------SSDTKELNI-------------KTTN 60
           MAD NNNN         S   +SS          SSD K+  +                N
Sbjct: 1   MADQNNNNNNKHHPLLPSPATSSSPLTTPPLPTTSSDIKDFTLIISNKDQNNSNSNNNIN 60

Query: 61  TEQLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEP 120
            +QLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEP
Sbjct: 61  NKQLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEP 120

Query: 121 SIFAATGSGTIPASAL-----SAADHHS-------------AVTRGNWA----------- 180
           SI AATGSGTIPASAL     S +DH S             AV R NWA           
Sbjct: 121 SIIAATGSGTIPASALHAVGVSLSDHDSSVSVSASLTPKIEAVPRTNWAMMGANLSRSHM 180

Query: 181 ----------GLWTGF--EYPGPIVPKLGLH--------------------------GLE 198
                     G+ TGF  E PG I+PK G H                          GLE
Sbjct: 181 ASQGFWPSLGGIGTGFVSENPGSIMPKFGFHGFELQGMNLGSVNFPAMIGNQHQQIPGLE 240

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BLAST of Sed0026026 vs. NCBI nr
Match: XP_023004307.1 (transcription factor TCP20-like [Cucurbita maxima])

HSP 1 Score: 183.7 bits (465), Expect = 1.5e-42
Identity = 138/280 (49.29%), Postives = 153/280 (54.64%), Query Frame = 0


Query: 1   MADHNNNNKKISQGQAS---------SSSDTKELNI------KTTNTEQLAPKRTSNKDR 60
           MA+H  NNKK S   ++         +S+D K+ NI      ++   +QLAPKRTSNKDR
Sbjct: 1   MAEH--NNKKPSPPASTPTTITPPPPASADIKDFNIIIASKDESKPHQQLAPKRTSNKDR 60

Query: 61  HKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIFAATGSGTIPAS 120
           HKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSI AATGSGTIPAS
Sbjct: 61  HKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPAS 120

Query: 121 ALSAA-----DHHSA-----------VTRGNWA---------------------GLWTGF 180
           AL AA     D  ++           V R NWA                     G+ TGF
Sbjct: 121 ALHAAGVSVSDQETSISAALTPKLDGVARPNWAMMGANLNRSHMATAGFWPSLGGIGTGF 180

Query: 181 --EYPGPIVPKLGLH---------------------------GLELGLSQEGNHNNSNNL 197
             E  G I+PK G H                           GLELGLSQEG     NNL
Sbjct: 181 VSENSGSIMPKFGFHGFEFQGMNLGSMNFPTIIGNQHQQHVPGLELGLSQEG-----NNL 240

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BLAST of Sed0026026 vs. NCBI nr
Match: KAG6592804.1 (Transcription factor TCP20, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020288.1 Transcription factor TCP20, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 182.6 bits (462), Expect = 3.4e-42
Identity = 138/281 (49.11%), Postives = 151/281 (53.74%), Query Frame = 0


Query: 1   MADHNNNNKKISQGQASS----------SSDTKELNI------KTTNTEQLAPKRTSNKD 60
           MA+H   NKK     AS+          S+D K+ NI      +  + +QLAPKRTSNKD
Sbjct: 1   MAEH---NKKKPSPPASTPTTITPPPPPSADIKDFNIIIASKDENKHHQQLAPKRTSNKD 60

Query: 61  RHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIFAATGSGTIPA 120
           RHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSI AATGSGTIPA
Sbjct: 61  RHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPA 120

Query: 121 SALSAA-----DHHSA-----------VTRGNWA---------------------GLWTG 180
           SAL AA     D  ++           V R NWA                     G+ TG
Sbjct: 121 SALHAAGVSVSDQETSISAALTPKLDGVARPNWAMMGANLNRSHMATAGFWPSLGGIGTG 180

Query: 181 F--EYPGPIVPKLGLH---------------------------GLELGLSQEGNHNNSNN 197
           F  E  G I+PK G H                           GLELGLSQEG     NN
Sbjct: 181 FVSENSGSIMPKFGFHGFEFQGMNLGSMNFPTIIGNQHQQHVPGLELGLSQEG-----NN 240

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BLAST of Sed0026026 vs. ExPASy Swiss-Prot
Match: Q9LSD5 (Transcription factor TCP20 OS=Arabidopsis thaliana OX=3702 GN=TCP20 PE=1 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 8.3e-36
Identity = 113/252 (44.84%), Postives = 133/252 (52.78%), Query Frame = 0


Query: 1   MADHNNN-NKKISQGQASSSSDTKELNIKTTNTEQLAPKRTSNKDRHKKVDGRGRRIRMP 60
           ++D N     +I   Q   S+  KE N K+ N  QL PKR+SNKDRH KV+GRGRRIRMP
Sbjct: 36  VSDENRKPTTEIKDFQIVVSASDKEPNKKSQNQNQLGPKRSSNKDRHTKVEGRGRRIRMP 95

Query: 61  ALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIFAATGSGTIPASALSA----ADHH-- 120
           ALCAAR+FQLTRELGHK+DGETIQWLLQQAEPSI AATGSGTIPASAL++    ++HH  
Sbjct: 96  ALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALASSAATSNHHQG 155

Query: 121 SAVTRG------------------NW--------------AGLW---------------- 176
            ++T G                  NW               GLW                
Sbjct: 156 GSLTAGLMISHDLDGGSSSSGRPLNWGIGGGEGVSRSSLPTGLWPNVAGFGSGVPTTGLM 215

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BLAST of Sed0026026 vs. ExPASy Swiss-Prot
Match: Q9C9L2 (Transcription factor TCP15 OS=Arabidopsis thaliana OX=3702 GN=TCP15 PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.9e-27
Identity = 70/113 (61.95%), Postives = 86/113 (76.11%), Query Frame = 0


Query: 3   DHNNN-NKKISQGQASSSSDTKELNIKTTNTE------QLAPKRTSNKDRHKKVDGRGRR 62
           DHN+  N  +    +S+SS +  L I +T +E      +  PKRTS KDRH KV+GRGRR
Sbjct: 6   DHNHRPNFPLQLLDSSTSSSSTSLAIISTTSEPNSEPKKPPPKRTSTKDRHTKVEGRGRR 65

Query: 63  IRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIFAATGSGTIPASALS 109
           IRMPA+CAARVFQLTRELGHK+DGETI+WLLQQAEP++ AATG+GTIPA+  S
Sbjct: 66  IRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTS 118

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BLAST of Sed0026026 vs. ExPASy Swiss-Prot
Match: Q93Z00 (Transcription factor TCP14 OS=Arabidopsis thaliana OX=3702 GN=TCP14 PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.2e-26
Identity = 66/103 (64.08%), Postives = 76/103 (73.79%), Query Frame = 0


Query: 12  SQGQASSSSDTKELNIKTTNTEQLAP------KRTSNKDRHKKVDGRGRRIRMPALCAAR 71
           SQ Q S    T++  ++T     +        KR S KDRH KVDGRGRRIRMPALCAAR
Sbjct: 81  SQSQKSQPQTTQKELLQTQEESAVVAAKKPPLKRASTKDRHTKVDGRGRRIRMPALCAAR 140

Query: 72  VFQLTRELGHKTDGETIQWLLQQAEPSIFAATGSGTIPASALS 109
           VFQLTRELGHK+DGETI+WLLQQAEPS+ AATG+GTIPA+  S
Sbjct: 141 VFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTS 183

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BLAST of Sed0026026 vs. ExPASy Swiss-Prot
Match: Q53PH2 (Transcription factor PCF3 OS=Oryza sativa subsp. japonica OX=39947 GN=PCF3 PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.6e-26
Identity = 63/87 (72.41%), Postives = 69/87 (79.31%), Query Frame = 0


Query: 36  APKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIFA 95
           A  +   KDRH KV+GRGRRIRMPALCAARVFQLTRELGHKTDGETI+WLLQQAEP+I A
Sbjct: 146 AGAKRPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVA 205

Query: 96  ATGSGTIPA-------SALSAADHHSA 116
           ATG+GTIPA       S  SAA H S+
Sbjct: 206 ATGTGTIPANFSSLAVSLRSAASHSSS 232

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BLAST of Sed0026026 vs. ExPASy Swiss-Prot
Match: Q9C518 (Transcription factor TCP8 OS=Arabidopsis thaliana OX=3702 GN=TCP8 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 6.0e-26
Identity = 79/167 (47.31%), Postives = 93/167 (55.69%), Query Frame = 0


Query: 29  TTNTEQLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQ 88
           T++T      + S KDRH KVDGRGRRIRMPALCAARVFQLTRELGHK+DGETI+WLLQQ
Sbjct: 47  TSSTATATTTKRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQ 106

Query: 89  AEPSIFAATGSGTIPA--SALSAADHHSAVTRGNWAGLWTGFEYPGPIVPKLGLHGLELG 148
           AEP+I AATG+GTIPA  S LS +   S  T             P   VP  G  GL   
Sbjct: 107 AEPAIVAATGTGTIPANFSTLSVSLRSSGSTLS---------APPSKSVPLYGALGL--- 166

Query: 149 LSQEGNHNNSNNLRGGMLNYAQIYQQFGQFGQLGQNPPLEMDQAPAK 194
                 H+  +   GG +  A      G   QL  +     +Q P +
Sbjct: 167 -----THHQYDEQGGGGVFAAHTSPLLGFHHQLQHHQNQNQNQDPVE 196

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BLAST of Sed0026026 vs. ExPASy TrEMBL
Match: A0A1S3CAQ4 (transcription factor TCP20-like OS=Cucumis melo OX=3656 GN=LOC103498864 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.1e-45
Identity = 145/298 (48.66%), Postives = 157/298 (52.68%), Query Frame = 0


Query: 1   MADHNNNNKK--------ISQGQASS----------SSDTKELNI-------------KT 60
           MAD NNNN           S   +SS          SSD K+  +               
Sbjct: 1   MADQNNNNNNNNKHHPLLPSPATSSSPLTTPPLPTPSSDIKDFTLIISNKDQNNSNSNSN 60

Query: 61  TNTEQLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQA 120
            N +QLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQA
Sbjct: 61  NNNKQLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQA 120

Query: 121 EPSIFAATGSGTIPASALSAA-----DHHS-------------AVTRGNWA--------- 180
           EPSI AATGSGTIPASAL AA     DH S             AV R NWA         
Sbjct: 121 EPSIIAATGSGTIPASALHAAGVSLSDHDSSVSVSASLTPKIEAVPRTNWAMMGANLSRS 180

Query: 181 ------------GLWTGF--EYPGPIVPKLGLH--------------------------G 198
                       G+ TGF  E PG I+PK G H                          G
Sbjct: 181 HMATPGFWPSLGGIGTGFVSENPGSIMPKFGFHGFEFQGMNLGSVNFPGMIGNQHQQIPG 240

[Close]

BLAST of Sed0026026 vs. ExPASy TrEMBL
Match: A0A5A7T992 (Transcription factor TCP20-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002190 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.1e-45
Identity = 145/298 (48.66%), Postives = 157/298 (52.68%), Query Frame = 0


Query: 1   MADHNNNNKK--------ISQGQASS----------SSDTKELNI-------------KT 60
           MAD NNNN           S   +SS          SSD K+  +               
Sbjct: 1   MADQNNNNNNNNKHHPLLPSPATSSSPLTTPPLPTPSSDIKDFTLIISNKDQNNSNSNSN 60

Query: 61  TNTEQLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQA 120
            N +QLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQA
Sbjct: 61  NNNKQLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQA 120

Query: 121 EPSIFAATGSGTIPASALSAA-----DHHS-------------AVTRGNWA--------- 180
           EPSI AATGSGTIPASAL AA     DH S             AV R NWA         
Sbjct: 121 EPSIIAATGSGTIPASALHAAGVSLSDHDSSVSVSASLTPKIEAVPRTNWAMMGANLSRS 180

Query: 181 ------------GLWTGF--EYPGPIVPKLGLH--------------------------G 198
                       G+ TGF  E PG I+PK G H                          G
Sbjct: 181 HMATPGFWPSLGGIGTGFVSENPGSIMPKFGFHGFEFQGMNLGSVNFPGMIGNQHQQIPG 240

[Close]

BLAST of Sed0026026 vs. ExPASy TrEMBL
Match: A0A0A0KC88 (TCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G093640 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 3.9e-44
Identity = 143/296 (48.31%), Postives = 156/296 (52.70%), Query Frame = 0


Query: 1   MADHNNNNKK------ISQGQASS----------SSDTKELNI-------------KTTN 60
           MAD NNNN         S   +SS          SSD K+  +                N
Sbjct: 1   MADQNNNNNNKHHPLLPSPATSSSPLTTPPLPTTSSDIKDFTLIISNKDQNNSNSNNNIN 60

Query: 61  TEQLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEP 120
            +QLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEP
Sbjct: 61  NKQLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEP 120

Query: 121 SIFAATGSGTIPASAL-----SAADHHS-------------AVTRGNWA----------- 180
           SI AATGSGTIPASAL     S +DH S             AV R NWA           
Sbjct: 121 SIIAATGSGTIPASALHAVGVSLSDHDSSVSVSASLTPKIEAVPRTNWAMMGANLSRSHM 180

Query: 181 ----------GLWTGF--EYPGPIVPKLGLH--------------------------GLE 198
                     G+ TGF  E PG I+PK G H                          GLE
Sbjct: 181 ASQGFWPSLGGIGTGFVSENPGSIMPKFGFHGFELQGMNLGSVNFPAMIGNQHQQIPGLE 240

[Close]

BLAST of Sed0026026 vs. ExPASy TrEMBL
Match: A0A6J1KQ25 (transcription factor TCP20-like OS=Cucurbita maxima OX=3661 GN=LOC111497669 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 7.3e-43
Identity = 138/280 (49.29%), Postives = 153/280 (54.64%), Query Frame = 0


Query: 1   MADHNNNNKKISQGQAS---------SSSDTKELNI------KTTNTEQLAPKRTSNKDR 60
           MA+H  NNKK S   ++         +S+D K+ NI      ++   +QLAPKRTSNKDR
Sbjct: 1   MAEH--NNKKPSPPASTPTTITPPPPASADIKDFNIIIASKDESKPHQQLAPKRTSNKDR 60

Query: 61  HKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIFAATGSGTIPAS 120
           HKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSI AATGSGTIPAS
Sbjct: 61  HKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPAS 120

Query: 121 ALSAA-----DHHSA-----------VTRGNWA---------------------GLWTGF 180
           AL AA     D  ++           V R NWA                     G+ TGF
Sbjct: 121 ALHAAGVSVSDQETSISAALTPKLDGVARPNWAMMGANLNRSHMATAGFWPSLGGIGTGF 180

Query: 181 --EYPGPIVPKLGLH---------------------------GLELGLSQEGNHNNSNNL 197
             E  G I+PK G H                           GLELGLSQEG     NNL
Sbjct: 181 VSENSGSIMPKFGFHGFEFQGMNLGSMNFPTIIGNQHQQHVPGLELGLSQEG-----NNL 240

[Close]

BLAST of Sed0026026 vs. ExPASy TrEMBL
Match: A0A6J1H7H8 (transcription factor TCP20-like OS=Cucurbita moschata OX=3662 GN=LOC111460886 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.6e-42
Identity = 138/281 (49.11%), Postives = 151/281 (53.74%), Query Frame = 0


Query: 1   MADHNNNNKKISQGQASS----------SSDTKELNI------KTTNTEQLAPKRTSNKD 60
           MA+H   NKK     AS+          S+D K+ NI      +  + +QLAPKRTSNKD
Sbjct: 1   MAEH---NKKKPSPPASTPTTITPPPPPSADIKDFNIIIASKDENKHHQQLAPKRTSNKD 60

Query: 61  RHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIFAATGSGTIPA 120
           RHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSI AATGSGTIPA
Sbjct: 61  RHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPA 120

Query: 121 SALSAA-----DHHSA-----------VTRGNWA---------------------GLWTG 180
           SAL AA     D  ++           V R NWA                     G+ TG
Sbjct: 121 SALHAAGVSVSDQETSISAALTPKLDGVARPNWAMMGANLNRSHMATAGFWPSLGGIGTG 180

Query: 181 F--EYPGPIVPKLGLH---------------------------GLELGLSQEGNHNNSNN 197
           F  E  G I+PK G H                           GLELGLSQEG     NN
Sbjct: 181 FVSENSGSIMPKFGFHGFEFQGMNLGSMNFPTIIGNQHQQHVPGLELGLSQEG-----NN 240

[Close]

BLAST of Sed0026026 vs. TAIR 10
Match: AT3G27010.1 (TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 )

HSP 1 Score: 151.8 bits (382), Expect = 5.9e-37
Identity = 113/252 (44.84%), Postives = 133/252 (52.78%), Query Frame = 0


Query: 1   MADHNNN-NKKISQGQASSSSDTKELNIKTTNTEQLAPKRTSNKDRHKKVDGRGRRIRMP 60
           ++D N     +I   Q   S+  KE N K+ N  QL PKR+SNKDRH KV+GRGRRIRMP
Sbjct: 36  VSDENRKPTTEIKDFQIVVSASDKEPNKKSQNQNQLGPKRSSNKDRHTKVEGRGRRIRMP 95

Query: 61  ALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIFAATGSGTIPASALSA----ADHH-- 120
           ALCAAR+FQLTRELGHK+DGETIQWLLQQAEPSI AATGSGTIPASAL++    ++HH  
Sbjct: 96  ALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALASSAATSNHHQG 155

Query: 121 SAVTRG------------------NW--------------AGLW---------------- 176
            ++T G                  NW               GLW                
Sbjct: 156 GSLTAGLMISHDLDGGSSSSGRPLNWGIGGGEGVSRSSLPTGLWPNVAGFGSGVPTTGLM 215

[Close]

BLAST of Sed0026026 vs. TAIR 10
Match: AT1G69690.1 (TCP family transcription factor )

HSP 1 Score: 124.0 bits (310), Expect = 1.3e-28
Identity = 70/113 (61.95%), Postives = 86/113 (76.11%), Query Frame = 0


Query: 3   DHNNN-NKKISQGQASSSSDTKELNIKTTNTE------QLAPKRTSNKDRHKKVDGRGRR 62
           DHN+  N  +    +S+SS +  L I +T +E      +  PKRTS KDRH KV+GRGRR
Sbjct: 6   DHNHRPNFPLQLLDSSTSSSSTSLAIISTTSEPNSEPKKPPPKRTSTKDRHTKVEGRGRR 65

Query: 63  IRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIFAATGSGTIPASALS 109
           IRMPA+CAARVFQLTRELGHK+DGETI+WLLQQAEP++ AATG+GTIPA+  S
Sbjct: 66  IRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTS 118

[Close]

BLAST of Sed0026026 vs. TAIR 10
Match: AT3G47620.1 (TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 )

HSP 1 Score: 121.3 bits (303), Expect = 8.6e-28
Identity = 66/103 (64.08%), Postives = 76/103 (73.79%), Query Frame = 0


Query: 12  SQGQASSSSDTKELNIKTTNTEQLAP------KRTSNKDRHKKVDGRGRRIRMPALCAAR 71
           SQ Q S    T++  ++T     +        KR S KDRH KVDGRGRRIRMPALCAAR
Sbjct: 81  SQSQKSQPQTTQKELLQTQEESAVVAAKKPPLKRASTKDRHTKVDGRGRRIRMPALCAAR 140

Query: 72  VFQLTRELGHKTDGETIQWLLQQAEPSIFAATGSGTIPASALS 109
           VFQLTRELGHK+DGETI+WLLQQAEPS+ AATG+GTIPA+  S
Sbjct: 141 VFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTS 183

[Close]

BLAST of Sed0026026 vs. TAIR 10
Match: AT1G58100.1 (TCP family transcription factor )

HSP 1 Score: 119.0 bits (297), Expect = 4.3e-27
Identity = 79/167 (47.31%), Postives = 93/167 (55.69%), Query Frame = 0


Query: 29  TTNTEQLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQ 88
           T++T      + S KDRH KVDGRGRRIRMPALCAARVFQLTRELGHK+DGETI+WLLQQ
Sbjct: 47  TSSTATATTTKRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQ 106

Query: 89  AEPSIFAATGSGTIPA--SALSAADHHSAVTRGNWAGLWTGFEYPGPIVPKLGLHGLELG 148
           AEP+I AATG+GTIPA  S LS +   S  T             P   VP  G  GL   
Sbjct: 107 AEPAIVAATGTGTIPANFSTLSVSLRSSGSTLS---------APPSKSVPLYGALGL--- 166

Query: 149 LSQEGNHNNSNNLRGGMLNYAQIYQQFGQFGQLGQNPPLEMDQAPAK 194
                 H+  +   GG +  A      G   QL  +     +Q P +
Sbjct: 167 -----THHQYDEQGGGGVFAAHTSPLLGFHHQLQHHQNQNQNQDPVE 196

[Close]

BLAST of Sed0026026 vs. TAIR 10
Match: AT5G51910.1 (TCP family transcription factor )

HSP 1 Score: 118.2 bits (295), Expect = 7.3e-27
Identity = 56/73 (76.71%), Postives = 67/73 (91.78%), Query Frame = 0


Query: 36  APKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIFA 95
           APKR ++KDRH KV+GRGRRIRMPA CAARVFQLTRELGHK+DGETI+WLL++AEP+I  
Sbjct: 51  APKRPTSKDRHTKVEGRGRRIRMPAGCAARVFQLTRELGHKSDGETIRWLLERAEPAIIE 110

Query: 96  ATGSGTIPASALS 109
           ATG+GT+PA A+S
Sbjct: 111 ATGTGTVPAIAVS 123

The following BLAST results are available for this feature:

BLAST of Sed0026026 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038876191.1	1.4e-48	52.48	transcription factor TCP20-like [Benincasa hispida]	[more]
XP_008459878.1	4.2e-45	48.66	PREDICTED: transcription factor TCP20-like [Cucumis melo] >XP_016902500.1 PREDIC...	[more]
XP_011656799.1	8.0e-44	48.31	transcription factor TCP20 [Cucumis sativus] >XP_031743603.1 transcription facto...	[more]
XP_023004307.1	1.5e-42	49.29	transcription factor TCP20-like [Cucurbita maxima]	[more]
KAG6592804.1	3.4e-42	49.11	Transcription factor TCP20, partial [Cucurbita argyrosperma subsp. sororia] >KAG...	[more]

BLAST of Sed0026026 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LSD5	8.3e-36	44.84	Transcription factor TCP20 OS=Arabidopsis thaliana OX=3702 GN=TCP20 PE=1 SV=1	[more]
Q9C9L2	1.9e-27	61.95	Transcription factor TCP15 OS=Arabidopsis thaliana OX=3702 GN=TCP15 PE=1 SV=1	[more]
Q93Z00	1.2e-26	64.08	Transcription factor TCP14 OS=Arabidopsis thaliana OX=3702 GN=TCP14 PE=1 SV=1	[more]
Q53PH2	4.6e-26	72.41	Transcription factor PCF3 OS=Oryza sativa subsp. japonica OX=39947 GN=PCF3 PE=2 ...	[more]
Q9C518	6.0e-26	47.31	Transcription factor TCP8 OS=Arabidopsis thaliana OX=3702 GN=TCP8 PE=1 SV=1	[more]

BLAST of Sed0026026 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CAQ4	2.1e-45	48.66	transcription factor TCP20-like OS=Cucumis melo OX=3656 GN=LOC103498864 PE=4 SV=...	[more]
A0A5A7T992	2.1e-45	48.66	Transcription factor TCP20-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A0A0KC88	3.9e-44	48.31	TCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G093640 PE=4 SV...	[more]
A0A6J1KQ25	7.3e-43	49.29	transcription factor TCP20-like OS=Cucurbita maxima OX=3661 GN=LOC111497669 PE=4...	[more]
A0A6J1H7H8	1.6e-42	49.11	transcription factor TCP20-like OS=Cucurbita moschata OX=3662 GN=LOC111460886 PE...	[more]

BLAST of Sed0026026 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27010.1	5.9e-37	44.84	TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20	[more]
AT1G69690.1	1.3e-28	61.95	TCP family transcription factor	[more]
AT3G47620.1	8.6e-28	64.08	TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14	[more]
AT1G58100.1	4.3e-27	47.31	TCP family transcription factor	[more]
AT5G51910.1	7.3e-27	76.71	TCP family transcription factor	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017887	Transcription factor TCP subgroup	PFAM	PF03634	TCP	coord: 40..114 e-value: 1.4E-29 score: 103.7
IPR017887	Transcription factor TCP subgroup	PROSITE	PS51369	TCP	coord: 42..96 score: 26.800056
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 177..197
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	PANTHER	PTHR31072:SF4	TRANSCRIPTION FACTOR TCP16-RELATED	coord: 5..114
IPR005333	Transcription factor, TCP	PANTHER	PTHR31072	TRANSCRIPTION FACTOR TCP4-RELATED	coord: 5..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0026026.1	Sed0026026.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003700	DNA-binding transcription factor activity