Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTAATAATAATGAAACGATCAATTTGCTATTTGATTGGTCCTACTGCGTTAATTATATTCAAAAGTTTCGAGAAGCAAATAGTTCTACCATTCTACGCTCGACAAAGCTTTGTACAAATAATGTAAAAAGAGAAATTTTTTGGATTCCTCCAACTAATAACTCTTATAAACTAAATTGTGATGCATCAATTAGAAAGGATTTCTTGGCAGGTGGTGTTGGAGCTATTTTACGAAATAATAAAAGGGAATCGATGCTGACCTTGGCGACACCCTTTCAAGGGATAACATACCCTCTAGTGCTTGAAGCAATAACTGTTCGAGAAGGCCTTTTGATGGTGGCTGACATGGGATTTCAACACCTGGTGGTGGAATCAGACTCGGCTGGATTAATCGCAGGCTTAAATAAGCAACTTCTGAATCGTTCAGAATTAGGTAGAATCCTTGAAGAAATTGCAGGTCTCACAAGGAAGTATTCTTCTGTTACTTTTCAATGGTGCAATCGAAAGGCCAGCGACGTTGCTTATGCACTGGCGAACTTGGCGATTATACTTCAAGATGAAATGTTTTGGATGGAGGAGGTGCCGATATCTGTGGCACCTTTGTATTGCTATGAAAAGATGGCATGTGGCCATTCTATTTCTTTGTCCTTTTAA
mRNA sequence
ATGAGTAATAATAATGAAACGATCAATTTGCTATTTGATTGGTCCTACTGCGTTAATTATATTCAAAAGTTTCGAGAAGCAAATAGTTCTACCATTCTACGCTCGACAAAGCTTTGTACAAATAATGTAAAAAGAGAAATTTTTTGGATTCCTCCAACTAATAACTCTTATAAACTAAATTGTGATGCATCAATTAGAAAGGATTTCTTGGCAGGTGGTGTTGGAGCTATTTTACGAAATAATAAAAGGGAATCGATGCTGACCTTGGCGACACCCTTTCAAGGGATAACATACCCTCTAGTGCTTGAAGCAATAACTGTTCGAGAAGGCCTTTTGATGGTGGCTGACATGGGATTTCAACACCTGGTGGTGGAATCAGACTCGGCTGGATTAATCGCAGGCTTAAATAAGCAACTTCTGAATCGTTCAGAATTAGGTAGAATCCTTGAAGAAATTGCAGGTCTCACAAGGAAGTATTCTTCTGTTACTTTTCAATGGTGCAATCGAAAGGCCAGCGACGTTGCTTATGCACTGGCGAACTTGGCGATTATACTTCAAGATGAAATGTTTTGGATGGAGGAGGTGCCGATATCTGTGGCACCTTTGTATTGCTATGAAAAGATGGCATGTGGCCATTCTATTTCTTTGTCCTTTTAA
Coding sequence (CDS)
ATGAGTAATAATAATGAAACGATCAATTTGCTATTTGATTGGTCCTACTGCGTTAATTATATTCAAAAGTTTCGAGAAGCAAATAGTTCTACCATTCTACGCTCGACAAAGCTTTGTACAAATAATGTAAAAAGAGAAATTTTTTGGATTCCTCCAACTAATAACTCTTATAAACTAAATTGTGATGCATCAATTAGAAAGGATTTCTTGGCAGGTGGTGTTGGAGCTATTTTACGAAATAATAAAAGGGAATCGATGCTGACCTTGGCGACACCCTTTCAAGGGATAACATACCCTCTAGTGCTTGAAGCAATAACTGTTCGAGAAGGCCTTTTGATGGTGGCTGACATGGGATTTCAACACCTGGTGGTGGAATCAGACTCGGCTGGATTAATCGCAGGCTTAAATAAGCAACTTCTGAATCGTTCAGAATTAGGTAGAATCCTTGAAGAAATTGCAGGTCTCACAAGGAAGTATTCTTCTGTTACTTTTCAATGGTGCAATCGAAAGGCCAGCGACGTTGCTTATGCACTGGCGAACTTGGCGATTATACTTCAAGATGAAATGTTTTGGATGGAGGAGGTGCCGATATCTGTGGCACCTTTGTATTGCTATGAAAAGATGGCATGTGGCCATTCTATTTCTTTGTCCTTTTAA
Protein sequence
MSNNNETINLLFDWSYCVNYIQKFREANSSTILRSTKLCTNNVKREIFWIPPTNNSYKLNCDASIRKDFLAGGVGAILRNNKRESMLTLATPFQGITYPLVLEAITVREGLLMVADMGFQHLVVESDSAGLIAGLNKQLLNRSELGRILEEIAGLTRKYSSVTFQWCNRKASDVAYALANLAIILQDEMFWMEEVPISVAPLYCYEKMACGHSISLSF
Homology
BLAST of Sed0025910 vs. NCBI nr
Match:
XP_021763631.1 (uncharacterized protein LOC110728264 [Chenopodium quinoa])
HSP 1 Score: 113.6 bits (283), Expect = 2.1e-21
Identity = 70/206 (33.98%), Postives = 111/206 (53.88%), Query Frame = 0
Query: 8 INLLFDWSYCVNYIQKFREAN----SSTILRSTKLCTNNVKREIFWIPPTNNSYKLNCDA 67
++ L S +N+ ++ AN +++I RS+++ WIPPT++ YKLN DA
Sbjct: 89 VDPLIACSKTLNFFDEYVAANLREPTTSIERSSEVTG-------LWIPPTSSRYKLNTDA 148
Query: 68 SIRKDFLAGGVGAILRNNKRESMLTLATPFQGITYPLVLEAITVREGLLMVADMGFQHLV 127
SI KD GG+G ++R+N + M+T G +EA+ + G+ V D GF+ L
Sbjct: 149 SISKD-RRGGLGMVVRDNIGDVMMTWGKSLNGTGIISEIEAVALLFGMRAVFDAGFRKLE 208
Query: 128 VESDSAGLIAGLNKQLLNRSELGRILEEIAGLTRKYSSVTFQWCNRKASDVAYALANLAI 187
V SD +I LN S I+ +I + V F +C R + VA+++ANL++
Sbjct: 209 VSSDCLQVIELLNGSKHENSPTQLIVTDILSFAYSFDFVCFSFCPRLCNKVAHSMANLSL 268
Query: 188 ILQDEMFWMEEVPISVAPLYCYEKMA 210
L +E FWME+ P SV PL ++K+A
Sbjct: 269 SLSEERFWMEDCPASVYPLVDFDKVA 286
BLAST of Sed0025910 vs. NCBI nr
Match:
XP_030930636.1 (uncharacterized protein LOC115956377 [Quercus lobata])
HSP 1 Score: 103.6 bits (257), Expect = 2.2e-18
Identity = 53/158 (33.54%), Postives = 84/158 (53.16%), Query Frame = 0
Query: 49 WIPPTNNSYKLNCDASIRKDFLAGGVGAILRNNKRESMLTLATPFQGITYPLVLEAITVR 108
W PP ++++KLN DA++ + GVGA++RN K E M ++ + V E I R
Sbjct: 37 WHPPPDSAFKLNFDAAVFSELSCSGVGAMIRNEKGEVMAAMSAKGPHVVDSAVAEVIACR 96
Query: 109 EGLLMVADMGFQHLVVESDSAGLIAGLNKQLLNRSELGRILEEIAGLTRKYSSVTFQWCN 168
L + GF LVVE D+ ++ L + S LG I+++I LTR + V F +
Sbjct: 97 RALEFACEAGFTDLVVEGDNLSVMKSLAASKTDHSWLGHIIQDIKWLTRSFRKVLFSYVR 156
Query: 169 RKASDVAYALANLAIILQDEMFWMEEVPISVAPLYCYE 207
R A+ VA+ LA A + ++M+W+E+ P V Y+
Sbjct: 157 RAANSVAHGLARYAKYVHEDMYWIEDNPPPVLEALYYD 194
BLAST of Sed0025910 vs. NCBI nr
Match:
XP_023928118.1 (uncharacterized protein LOC112039474 [Quercus suber])
HSP 1 Score: 103.2 bits (256), Expect = 2.9e-18
Identity = 54/158 (34.18%), Postives = 82/158 (51.90%), Query Frame = 0
Query: 49 WIPPTNNSYKLNCDASIRKDFLAGGVGAILRNNKRESMLTLATPFQGITYPLVLEAITVR 108
W PP ++++KLN DA + GVGA++RN E M T+ + +V E I R
Sbjct: 154 WRPPPDSTFKLNFDAVVFSKLSCSGVGAMIRNENGEVMATMLARVPHVVDSVVAEVIACR 213
Query: 109 EGLLMVADMGFQHLVVESDSAGLIAGLNKQLLNRSELGRILEEIAGLTRKYSSVTFQWCN 168
+ GF LVVE D+ ++ L + S LG I+++I LTR + V+F +
Sbjct: 214 RAMKFACKAGFTDLVVEGDNLSVMKSLTTSETDLSWLGHIIQDIKWLTRSFRRVSFSYVR 273
Query: 169 RKASDVAYALANLAIILQDEMFWMEEVPISVAPLYCYE 207
R A+ VAY LA A + ++M+WME+ P V Y+
Sbjct: 274 RAANSVAYGLARYAKDIHEDMYWMEDNPPPVLEALYYD 311
BLAST of Sed0025910 vs. NCBI nr
Match:
XP_030968337.1 (uncharacterized protein LOC115988853 [Quercus lobata])
HSP 1 Score: 102.8 bits (255), Expect = 3.7e-18
Identity = 59/178 (33.15%), Postives = 90/178 (50.56%), Query Frame = 0
Query: 19 NYIQKFREANSSTILRSTKLCTNNVKREIFWIPPTNNSYKLNCDASIRKDFLAGGVGAIL 78
+++++FREA + R V RE+ W P N +KLN DA+I + A G GA++
Sbjct: 999 DFLKEFREAQQHLVTR------RQVAREVQWRPSPRNGFKLNFDAAIFDELNATGFGAVI 1058
Query: 79 RNNKRESMLTLATPFQGITYPLVLEAITVREGLLMVADMGFQHLVVESDSAGLIAGLNKQ 138
RN + E M +A ++ E + R L D GF L+VE D+ ++ + +
Sbjct: 1059 RNGEGEVMAAMAAKGPPVSGSEEAEVLACRNALEFAVDAGFTELLVEGDNVSVMQRILRS 1118
Query: 139 LLNRSELGRILEEIAGLTRKYSSVTFQWCNRKASDVAYALANLAIILQDEMFWMEEVP 197
N S LG + E+I L V+ +W +R ++VAY LA A L DE W+EE P
Sbjct: 1119 QPNGSWLGHLYEDIKCLCAGLCVVSVEWVSRTTNEVAYCLAKHARGLVDESVWLEESP 1170
BLAST of Sed0025910 vs. NCBI nr
Match:
XP_023920779.1 (uncharacterized protein LOC112032247 [Quercus suber])
HSP 1 Score: 100.5 bits (249), Expect = 1.9e-17
Identity = 58/188 (30.85%), Postives = 96/188 (51.06%), Query Frame = 0
Query: 20 YIQKFREANSSTILRSTKLCTNNVKREIFWIPPTNNSYKLNCDASIRKDFLAGGVGAILR 79
++ +FR+A LR C E W PP+ +KLN DA++ + G+GA++R
Sbjct: 82 FLDEFRQAQGQ--LRIHVSCPG----ESVWRPPSVFPFKLNFDAAVFSELSCSGIGAVIR 141
Query: 80 NNKRESMLTLATPFQGITYPLVLEAITVREGLLMVADMGFQHLVVESDSAGLIAGLNKQL 139
N+ E M ++ + V E + R + + GF LVVE D+ ++ L
Sbjct: 142 NDNGEVMAAMSARGPLVADSAVAEVLACRRAMEFAREAGFTDLVVEGDNLCVMKALAASE 201
Query: 140 LNRSELGRILEEIAGLTRKYSSVTFQWCNRKASDVAYALANLAIILQDEMFWMEE-VPIS 199
L+RS LG I+++I L R + ++F + R A+ VA+ LA A + ++M+WME+ P
Sbjct: 202 LDRSWLGHIIQDIKWLARNFRRISFSYVRRAANTVAHGLARYAKYIHEDMYWMEDNHPPP 261
Query: 200 VAPLYCYE 207
V CY+
Sbjct: 262 VLEALCYD 263
BLAST of Sed0025910 vs. ExPASy TrEMBL
Match:
A0A803L9N8 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)
HSP 1 Score: 112.5 bits (280), Expect = 2.3e-21
Identity = 69/205 (33.66%), Postives = 110/205 (53.66%), Query Frame = 0
Query: 8 INLLFDWSYCVNYIQKFREAN----SSTILRSTKLCTNNVKREIFWIPPTNNSYKLNCDA 67
++ L S +N+ ++ AN +++I RS+++ WIPPT++ YKLN DA
Sbjct: 89 VDPLIACSKTLNFFDEYVAANLREPTTSIERSSEVTG-------LWIPPTSSRYKLNTDA 148
Query: 68 SIRKDFLAGGVGAILRNNKRESMLTLATPFQGITYPLVLEAITVREGLLMVADMGFQHLV 127
SI KD GG+G ++R+N + M+T G +EA+ + G+ V D GF+ L
Sbjct: 149 SISKD-RRGGLGMVVRDNIGDVMMTWGKSLNGTGIISEIEAVALLFGMRAVFDAGFRKLE 208
Query: 128 VESDSAGLIAGLNKQLLNRSELGRILEEIAGLTRKYSSVTFQWCNRKASDVAYALANLAI 187
V SD +I LN S I+ +I + V F +C R + VA+++ANL++
Sbjct: 209 VSSDCLQVIELLNGSKHENSPTQLIVTDILSFAYSFDFVCFSFCPRLCNKVAHSMANLSL 268
Query: 188 ILQDEMFWMEEVPISVAPLYCYEKM 209
L +E FWME+ P SV PL ++K+
Sbjct: 269 SLSEERFWMEDCPASVYPLVDFDKL 285
BLAST of Sed0025910 vs. ExPASy TrEMBL
Match:
A0A7N2LST3 (RNase H domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)
HSP 1 Score: 97.8 bits (242), Expect = 5.8e-17
Identity = 52/148 (35.14%), Postives = 79/148 (53.38%), Query Frame = 0
Query: 49 WIPPTNNSYKLNCDASIRKDFLAGGVGAILRNNKRESMLTLATPFQGITYPLVLEAITVR 108
W PPT SYK+N DA++ + A G G ++RN + E M +LA + + + R
Sbjct: 9 WEPPTGYSYKINVDAAVFAEINASGFGVVVRNERAEVMASLAAKGPPVQDSEEAKLLACR 68
Query: 109 EGLLMVADMGFQHLVVESDSAGLIAGLNKQLLNRSELGRILEEIAGLTRKYSSVTFQWCN 168
+ L D GF +V+E DS ++ ++ NRS LG I E+I L + S + +
Sbjct: 69 KALEFAVDAGFMDVVLEGDSLNVMRAISTGKANRSRLGHIYEDIQCLAAGFRSYSVSFVK 128
Query: 169 RKASDVAYALANLAIILQDEMFWMEEVP 197
R A+ VA+ALA A + DE+ W+EE P
Sbjct: 129 RSANGVAHALACFAKNVGDELVWLEESP 156
BLAST of Sed0025910 vs. ExPASy TrEMBL
Match:
A0A5B6V4L7 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_008285 PE=4 SV=1)
HSP 1 Score: 96.7 bits (239), Expect = 1.3e-16
Identity = 53/171 (30.99%), Postives = 88/171 (51.46%), Query Frame = 0
Query: 37 KLCTNNVKREIFWIPPTNNSYKLNCDASIRKDFLAGGVGAILRNNKRESMLTLATPFQGI 96
+L T N W PP N+ K+N DAS + G I RN + +M P++ I
Sbjct: 318 RLRTTNESTAPVWKPPANDIIKINFDASFNRLTRCSNSGIIARNKEGLTMAACTFPWENI 377
Query: 97 TYPLVLEAITVREGLLMVADMGFQHLVVESDSAGLIAGLNKQLLNRSELGRILEEIAGLT 156
P++ EA + ++M +MGFQ + +E D+ +I L +RS + +++EI G
Sbjct: 378 PNPVMAEARACLQAIIMAEEMGFQDVCIEGDALSVIRKLKAAEEDRSCISNLIKEIKGKV 437
Query: 157 RKYSSVTFQWCNRKASDVAYALANLAIILQDEMFWMEEVPISVAPLYCYEK 208
+ SV+F++ R+A+ VA+A+A + +W+EE P +V L EK
Sbjct: 438 VNFRSVSFKYVPREANKVAHAMAQEGARYEQPRYWIEEAPHAVEVLVNQEK 488
BLAST of Sed0025910 vs. ExPASy TrEMBL
Match:
A0A7J8YG77 (RNase H domain-containing protein OS=Gossypium aridum OX=34290 GN=Goari_000289 PE=4 SV=1)
HSP 1 Score: 95.5 bits (236), Expect = 2.9e-16
Identity = 58/192 (30.21%), Postives = 95/192 (49.48%), Query Frame = 0
Query: 18 VNYIQKF-REANSSTILRSTKLCTNNVKREIFWIPPTNNSYKLNCDASIRKDFLAGGVGA 77
VN+I+ + RE T+L RE+FW P + K N DA+ + + G
Sbjct: 99 VNFIRAYLRELGQVKSSIKTRLS----PREVFWRPLKEDQVKANFDAAYSRQDMTATAGV 158
Query: 78 ILRNNKRESMLTLATPFQGITYPLVLEAITVREGLLMVADMGFQHLVVESDSAGLIAGLN 137
I+RN++ M P I P EA ++ +MGF+ LVVE DS +I L
Sbjct: 159 IIRNHEGFVMGACPYPLGRIGDPTTTEAKACLHAVIFGEEMGFRDLVVEGDSLTVIKKLK 218
Query: 138 KQLLNRSELGRILEEIAGLTRKYSSVTFQWCNRKASDVAYALANLAIILQDEMFWMEEVP 197
++RS +G I+ EI + +++F++ RK S+ A+ALA L + +W+EEVP
Sbjct: 219 SDSVDRSVIGNIISEIQRKKLSFGTLSFEYTPRKTSEEAHALATREYNLDNPSYWIEEVP 278
Query: 198 ISVAPLYCYEKM 209
+ P+ +++
Sbjct: 279 TKIEPIIANDQI 286
BLAST of Sed0025910 vs. ExPASy TrEMBL
Match:
A0A2P5EYY2 (Ribonuclease H-like domain containing protein OS=Trema orientale OX=63057 GN=TorRG33x02_133770 PE=4 SV=1)
HSP 1 Score: 95.5 bits (236), Expect = 2.9e-16
Identity = 55/186 (29.57%), Postives = 95/186 (51.08%), Query Frame = 0
Query: 14 WSYCVNYIQKFREANSSTILRSTKLCTNNVKREIFWIPPTNNSYKLNCDASIRKDFLAGG 73
+++C+NY+++F+ A R++ T + R I W PP+ + YKLN DA+I + G
Sbjct: 4 FTWCLNYLREFQTAQQQ---RASVSSTQSAPRPIKWQPPSTHGYKLNVDAAISESQRCVG 63
Query: 74 VGAILRNNKRESMLTLATPFQGITYPLVLEAITVREGLLMVADMGFQHLVVESDSAGLIA 133
GAI+R+ + +A F P E + G+ + VE+D+ +++
Sbjct: 64 FGAIIRDTTGFVLAAVAKKFHNPLKPKTAEVAALSFGINWATKVFPSFEAVETDAQAVVS 123
Query: 134 GLNKQLLNRSELGRILEEIAGLTRKYSSVTFQWCNRKASDVAYALANLAIILQDEMFWME 193
L RSELG L+++ L V+ + R+ ++ Y LA LA+ L DE+FWME
Sbjct: 124 ALKTAHSYRSELGCFLKDVTSLLTTPPGVSVSYVPRECNNTTYGLAKLALRL-DELFWME 183
Query: 194 EVPISV 200
++ S+
Sbjct: 184 KISFSI 185
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A803L9N8 | 2.3e-21 | 33.66 | Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | [more] |
A0A7N2LST3 | 5.8e-17 | 35.14 | RNase H domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1 | [more] |
A0A5B6V4L7 | 1.3e-16 | 30.99 | Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_008285 PE=4 SV=1 | [more] |
A0A7J8YG77 | 2.9e-16 | 30.21 | RNase H domain-containing protein OS=Gossypium aridum OX=34290 GN=Goari_000289 P... | [more] |
A0A2P5EYY2 | 2.9e-16 | 29.57 | Ribonuclease H-like domain containing protein OS=Trema orientale OX=63057 GN=Tor... | [more] |
Match Name | E-value | Identity | Description | |