Sed0025859 (gene) Chayote v1

Overview


Name	Sed0025859
Type	gene
Organism	Sechium edule (Chayote v1)
Description	DUF962 domain-containing protein
Location	LG04: 24886180 .. 24886650 (+)
RNA-Seq Expression	Sed0025859
Synteny	Sed0025859

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTTCAGAAGCTTAGATGAGTTCTGGGTGTTCTACATGAACCAGCACTCGAAACCCTCCACGAGACGGTGGCACTTTATCGGAACTCTTTCTTCAATCTTCTTGTTCATTTGTTCCTTACTGTTTAGCTTGTGGTTTCTGTTCTTTGTGCCGTTGACTGGCTATGGGTTCGCGTGGTACAACCATTTCTTCGTCGAGAAGAATCTTCCACCTTCCTTTGGCCATCCATTTTGGTCGCTTCTCTGTGATTTCAAGATGTTTGGATTGATGCTTACAAGGAATATGGACAGGGAAATAAAGAGGCTGGGGAAAAGACCCGTTGTAACGGCCCGGAAAATTCATCCCGGCCTTCCCGGGAGGCCCAGGGGCATTTTGGTAATTTTGGGTCGGGCCGACAGGGCCGGTTTTGAAATTAAATTTGTCGGAATAATTATGAGTCAATTTGAAAAGAATTGGGATTTTTGGTGA

mRNA sequence

ATGAATTTCAGAAGCTTAGATGAGTTCTGGGTGTTCTACATGAACCAGCACTCGAAACCCTCCACGAGACGGTGGCACTTTATCGGAACTCTTTCTTCAATCTTCTTGTTCATTTGTTCCTTACTGTTTAGCTTGTGGTTTCTGTTCTTTGTGCCGTTGACTGGCTATGGGTTCGCGTGGTACAACCATTTCTTCGTCGAGAAGAATCTTCCACCTTCCTTTGGCCATCCATTTTGGTCGCTTCTCTGTGATTTCAAGATGTTTGGATTGATGCTTACAAGGAATATGGACAGGGAAATAAAGAGGCTGGGGAAAAGACCCGTTGTAACGGCCCGGAAAATTCATCCCGGCCTTCCCGGGAGGCCCAGGGGCATTTTGGTAATTTTGGGTCGGGCCGACAGGGCCGGTTTTGAAATTAAATTTGTCGGAATAATTATGAGTCAATTTGAAAAGAATTGGGATTTTTGGTGA

Coding sequence (CDS)

ATGAATTTCAGAAGCTTAGATGAGTTCTGGGTGTTCTACATGAACCAGCACTCGAAACCCTCCACGAGACGGTGGCACTTTATCGGAACTCTTTCTTCAATCTTCTTGTTCATTTGTTCCTTACTGTTTAGCTTGTGGTTTCTGTTCTTTGTGCCGTTGACTGGCTATGGGTTCGCGTGGTACAACCATTTCTTCGTCGAGAAGAATCTTCCACCTTCCTTTGGCCATCCATTTTGGTCGCTTCTCTGTGATTTCAAGATGTTTGGATTGATGCTTACAAGGAATATGGACAGGGAAATAAAGAGGCTGGGGAAAAGACCCGTTGTAACGGCCCGGAAAATTCATCCCGGCCTTCCCGGGAGGCCCAGGGGCATTTTGGTAATTTTGGGTCGGGCCGACAGGGCCGGTTTTGAAATTAAATTTGTCGGAATAATTATGAGTCAATTTGAAAAGAATTGGGATTTTTGGTGA

Protein sequence

MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFLFICSLLFSLWFLFFVPLTGYGFAWYNHFFVEKNLPPSFGHPFWSLLCDFKMFGLMLTRNMDREIKRLGKRPVVTARKIHPGLPGRPRGILVILGRADRAGFEIKFVGIIMSQFEKNWDFW

Homology

[Close]

BLAST of Sed0025859 vs. NCBI nr
Match: XP_022946132.1 (uncharacterized protein LOC111450283 [Cucurbita moschata] >XP_022946207.1 uncharacterized protein LOC111450283 [Cucurbita moschata] >XP_022971548.1 uncharacterized protein LOC111470232 [Cucurbita maxima] >XP_022971549.1 uncharacterized protein LOC111470232 [Cucurbita maxima] >XP_022971550.1 uncharacterized protein LOC111470232 [Cucurbita maxima] >XP_023538975.1 uncharacterized protein LOC111799748 [Cucurbita pepo subsp. pepo] >XP_023538976.1 uncharacterized protein LOC111799748 [Cucurbita pepo subsp. pepo] >XP_038903172.1 uncharacterized protein LOC120089838 [Benincasa hispida] >KAG7027913.1 hypothetical protein SDJN02_09092, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 219.5 bits (558), Expect = 2.0e-53
Identity = 101/111 (90.99%), Postives = 106/111 (95.50%), Query Frame = 0


Query: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFLFICSLLFSLWFLFFVPLTGYGFAW 60
           MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIF F+CSLLFS WFLFFVPLTGYGFAW
Sbjct: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAW 60

Query: 61  YNHFFVEKNLPPSFGHPFWSLLCDFKMFGLMLTRNMDREIKRLGKRPVVTA 112
           Y+HFFVE+N+P SFGHPFWSLLCDFKMFGLMLT NMDREIKRLGKRPV+ A
Sbjct: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQA 111

[Close]

BLAST of Sed0025859 vs. NCBI nr
Match: XP_022145672.1 (uncharacterized protein LOC111015066 [Momordica charantia] >XP_022145673.1 uncharacterized protein LOC111015066 [Momordica charantia])

HSP 1 Score: 215.7 bits (548), Expect = 2.8e-52
Identity = 99/111 (89.19%), Postives = 105/111 (94.59%), Query Frame = 0


Query: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFLFICSLLFSLWFLFFVPLTGYGFAW 60
           MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLS+IF F+CSLLFS WFLFFVPL GYGFAW
Sbjct: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFFVPLFGYGFAW 60

Query: 61  YNHFFVEKNLPPSFGHPFWSLLCDFKMFGLMLTRNMDREIKRLGKRPVVTA 112
           Y+HFFVE+N+P SFGHPFWSLLCDFKMFGLMLT NMDREIKRLGKRPV+ A
Sbjct: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQA 111

[Close]

BLAST of Sed0025859 vs. NCBI nr
Match: XP_008442469.1 (PREDICTED: uncharacterized protein LOC103486326 [Cucumis melo] >XP_016899716.1 PREDICTED: uncharacterized protein LOC103486326 [Cucumis melo] >KAA0044148.1 DUF962 domain-containing protein [Cucumis melo var. makuwa] >TYK24989.1 DUF962 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 214.9 bits (546), Expect = 4.8e-52
Identity = 98/111 (88.29%), Postives = 105/111 (94.59%), Query Frame = 0


Query: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFLFICSLLFSLWFLFFVPLTGYGFAW 60
           MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLS+IF F+CSLLFS WFLF VPLTGYGFAW
Sbjct: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFLVPLTGYGFAW 60

Query: 61  YNHFFVEKNLPPSFGHPFWSLLCDFKMFGLMLTRNMDREIKRLGKRPVVTA 112
           Y+HFFVE+N+P +FGHPFWSLLCDFKMFGLMLT NMDREIKRLGKRPV+ A
Sbjct: 61  YSHFFVEENVPATFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQA 111

[Close]

BLAST of Sed0025859 vs. NCBI nr
Match: XP_004137736.1 (uncharacterized protein LOC101216787 [Cucumis sativus] >KGN58796.1 hypothetical protein Csa_001372 [Cucumis sativus])

HSP 1 Score: 213.0 bits (541), Expect = 1.8e-51
Identity = 96/109 (88.07%), Postives = 104/109 (95.41%), Query Frame = 0


Query: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFLFICSLLFSLWFLFFVPLTGYGFAW 60
           MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLS+IF F+CSLLFS WFLFFVPLTGYGFAW
Sbjct: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFFVPLTGYGFAW 60

Query: 61  YNHFFVEKNLPPSFGHPFWSLLCDFKMFGLMLTRNMDREIKRLGKRPVV 110
           Y+HFF+E+N+P +F HPFWSLLCDFKMFGLMLT NMDREIKRLGKRPV+
Sbjct: 61  YSHFFIEENVPATFAHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVL 109

[Close]

BLAST of Sed0025859 vs. NCBI nr
Match: PQM42170.1 (uncharacterized protein Pyn_13924 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 198.4 bits (503), Expect = 4.7e-47
Identity = 90/109 (82.57%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFLFICSLLFSLWFLFFVPLTGYGFAW 60
           MNFRSL+EFWVFYMNQHSKPSTRRWHF+GTL SIF F+CSLLF+ W LF VPL GYG AW
Sbjct: 1   MNFRSLEEFWVFYMNQHSKPSTRRWHFVGTLVSIFFFLCSLLFNWWLLFLVPLAGYGCAW 60

Query: 61  YNHFFVEKNLPPSFGHPFWSLLCDFKMFGLMLTRNMDREIKRLGKRPVV 110
           Y+HFFVE N+P +FGHPFWSLLCDFKMF LMLT NMDREIKRLGKRPV+
Sbjct: 61  YSHFFVEGNVPATFGHPFWSLLCDFKMFALMLTGNMDREIKRLGKRPVL 109

[Close]

BLAST of Sed0025859 vs. ExPASy TrEMBL
Match: A0A6J1I767 (uncharacterized protein LOC111470232 OS=Cucurbita maxima OX=3661 GN=LOC111470232 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 9.5e-54
Identity = 101/111 (90.99%), Postives = 106/111 (95.50%), Query Frame = 0


Query: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFLFICSLLFSLWFLFFVPLTGYGFAW 60
           MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIF F+CSLLFS WFLFFVPLTGYGFAW
Sbjct: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAW 60

Query: 61  YNHFFVEKNLPPSFGHPFWSLLCDFKMFGLMLTRNMDREIKRLGKRPVVTA 112
           Y+HFFVE+N+P SFGHPFWSLLCDFKMFGLMLT NMDREIKRLGKRPV+ A
Sbjct: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQA 111

[Close]

BLAST of Sed0025859 vs. ExPASy TrEMBL
Match: A0A6J1G2W8 (uncharacterized protein LOC111450283 OS=Cucurbita moschata OX=3662 GN=LOC111450283 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 9.5e-54
Identity = 101/111 (90.99%), Postives = 106/111 (95.50%), Query Frame = 0


Query: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFLFICSLLFSLWFLFFVPLTGYGFAW 60
           MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIF F+CSLLFS WFLFFVPLTGYGFAW
Sbjct: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAW 60

Query: 61  YNHFFVEKNLPPSFGHPFWSLLCDFKMFGLMLTRNMDREIKRLGKRPVVTA 112
           Y+HFFVE+N+P SFGHPFWSLLCDFKMFGLMLT NMDREIKRLGKRPV+ A
Sbjct: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQA 111

[Close]

BLAST of Sed0025859 vs. ExPASy TrEMBL
Match: A0A6J1CWL4 (uncharacterized protein LOC111015066 OS=Momordica charantia OX=3673 GN=LOC111015066 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.4e-52
Identity = 99/111 (89.19%), Postives = 105/111 (94.59%), Query Frame = 0


Query: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFLFICSLLFSLWFLFFVPLTGYGFAW 60
           MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLS+IF F+CSLLFS WFLFFVPL GYGFAW
Sbjct: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFFVPLFGYGFAW 60

Query: 61  YNHFFVEKNLPPSFGHPFWSLLCDFKMFGLMLTRNMDREIKRLGKRPVVTA 112
           Y+HFFVE+N+P SFGHPFWSLLCDFKMFGLMLT NMDREIKRLGKRPV+ A
Sbjct: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQA 111

[Close]

BLAST of Sed0025859 vs. ExPASy TrEMBL
Match: A0A1S4DUQ8 (uncharacterized protein LOC103486326 OS=Cucumis melo OX=3656 GN=LOC103486326 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 2.3e-52
Identity = 98/111 (88.29%), Postives = 105/111 (94.59%), Query Frame = 0


Query: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFLFICSLLFSLWFLFFVPLTGYGFAW 60
           MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLS+IF F+CSLLFS WFLF VPLTGYGFAW
Sbjct: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFLVPLTGYGFAW 60

Query: 61  YNHFFVEKNLPPSFGHPFWSLLCDFKMFGLMLTRNMDREIKRLGKRPVVTA 112
           Y+HFFVE+N+P +FGHPFWSLLCDFKMFGLMLT NMDREIKRLGKRPV+ A
Sbjct: 61  YSHFFVEENVPATFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQA 111

[Close]

BLAST of Sed0025859 vs. ExPASy TrEMBL
Match: A0A5A7TMP5 (DUF962 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001060 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 2.3e-52
Identity = 98/111 (88.29%), Postives = 105/111 (94.59%), Query Frame = 0


Query: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFLFICSLLFSLWFLFFVPLTGYGFAW 60
           MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLS+IF F+CSLLFS WFLF VPLTGYGFAW
Sbjct: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFLVPLTGYGFAW 60

Query: 61  YNHFFVEKNLPPSFGHPFWSLLCDFKMFGLMLTRNMDREIKRLGKRPVVTA 112
           Y+HFFVE+N+P +FGHPFWSLLCDFKMFGLMLT NMDREIKRLGKRPV+ A
Sbjct: 61  YSHFFVEENVPATFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQA 111

[Close]

BLAST of Sed0025859 vs. TAIR 10
Match: AT3G09085.1 (Protein of unknown function (DUF962) )

HSP 1 Score: 166.4 bits (420), Expect = 1.8e-41
Identity = 76/109 (69.72%), Postives = 88/109 (80.73%), Query Frame = 0


Query: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFLFICSLLFSLWFLFFVPLTGYGFAW 60
           MNFRS +EFW FYM QHS PSTRR HFIG ++SI   ICS+L + WFL  VPL GYGFAW
Sbjct: 1   MNFRSFEEFWPFYMMQHSNPSTRRLHFIGIIASIVALICSILINWWFLALVPLLGYGFAW 60

Query: 61  YNHFFVEKNLPPSFGHPFWSLLCDFKMFGLMLTRNMDREIKRLGKRPVV 110
           Y+HFFVE N+P SFGHP WS LCD KMF LMLT +M+RE+KRLGKRP++
Sbjct: 61  YSHFFVEGNVPASFGHPLWSFLCDLKMFSLMLTGSMEREMKRLGKRPLL 109

The following BLAST results are available for this feature:

BLAST of Sed0025859 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946132.1	2.0e-53	90.99	uncharacterized protein LOC111450283 [Cucurbita moschata] >XP_022946207.1 unchar...	[more]
XP_022145672.1	2.8e-52	89.19	uncharacterized protein LOC111015066 [Momordica charantia] >XP_022145673.1 uncha...	[more]
XP_008442469.1	4.8e-52	88.29	PREDICTED: uncharacterized protein LOC103486326 [Cucumis melo] >XP_016899716.1 P...	[more]
XP_004137736.1	1.8e-51	88.07	uncharacterized protein LOC101216787 [Cucumis sativus] >KGN58796.1 hypothetical ...	[more]
PQM42170.1	4.7e-47	82.57	uncharacterized protein Pyn_13924 [Prunus yedoensis var. nudiflora]	[more]

BLAST of Sed0025859 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0025859 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I767	9.5e-54	90.99	uncharacterized protein LOC111470232 OS=Cucurbita maxima OX=3661 GN=LOC111470232...	[more]
A0A6J1G2W8	9.5e-54	90.99	uncharacterized protein LOC111450283 OS=Cucurbita moschata OX=3662 GN=LOC1114502...	[more]
A0A6J1CWL4	1.4e-52	89.19	uncharacterized protein LOC111015066 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A1S4DUQ8	2.3e-52	88.29	uncharacterized protein LOC103486326 OS=Cucumis melo OX=3656 GN=LOC103486326 PE=...	[more]
A0A5A7TMP5	2.3e-52	88.29	DUF962 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of Sed0025859 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09085.1	1.8e-41	69.72	Protein of unknown function (DUF962)	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009305	2-hydroxy-palmitic acid dioxygenase Mpo1-like	PFAM	PF06127	DUF962	coord: 3..96 e-value: 5.3E-26 score: 90.5
None	No IPR available	PANTHER	PTHR34205	TRANSMEMBRANE PROTEIN	coord: 3..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0025859.1	Sed0025859.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane