Sed0025765 (gene) Chayote v1

Overview


Name	Sed0025765
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Endoglucanase
Location	LG07: 1131198 .. 1134990 (-)
RNA-Seq Expression	Sed0025765
Synteny	Sed0025765

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTATAGTAATTTTATGAGTGATGTTGGAGAGAAAGGTATTTATCAGTATTAGGGTTTGTGAAGCATTTGGGGGGTCGCAGTGTGAGGGAGATGGCGGGTGCTTTTTGGGGGACTCGGATTTTGGAGATTGTGAAGAAGCACGACTCTGGAGGTAAAGTCTGGAAGAGAGTTAAGCTCACCACTACTCGCAAAGCCAACGCCAAGAAAAGGCTTCTTCGTGTTTGGCAGGTTCAATCTCAATCTCAATCTCAATCTCAATTCTATTTTTATGCCCGCCATTAGGGTTTCTAGATTTTTATTCGATTTGATTCTTCCTGCTACAAATAGCTCTCGAGATTAGGAGTGGAAATTTGGGGGCTTTGGATATAATTGCAACAAGGGTTGGATTGATTTTGTTTTTGCCTCAGAGTGGAGTGACAGTTTTCTGGAAGCAATGTACAATATATTGGAAACAATATCTTACGTCCCCAAGGACAACCTTGATGGCAGAGGCTTGGGGTCTCCAAAATGGTCAAATTGGGGGTGAAACGCAAAGCTAACACTGTTTTTTCTCATAGATTGAAAGAACCTTGTCAAGAACATTCAATAATAGTATCCACACGAAAGCTTGAATCTCTACTCTTAGAAGTTTTTTTTTGAAACAAGGGTAACCACACGCCTGTTTCTAGGCTAGGCACCGGAGACATCGAAGAAGTAGTGTCACTGGCGAGTCTCGAACCCGGGACCTTGAGGGAAGCATACCTTCAAAGTCCAAGTTTTCAACCACTGCGCCATCTCTTGGTAGGAACCTTTTTGTCAATGTGATTTCCTTAGTAGGAACCATTCAAGAGGCCTCCCACATTAAGGGTTTCAATGTGGGAACCAATGTTTTCCAAGTTGGTTATCTTCAATTTGCTTATGGTATCCTCTATTTTCATGGAATAAGTGTTTAATCTCTTCAAAATTCGTAAGGAGTCTTTAGGTCCAAGTACTATCCCATCCATTACGAAGTTCCTCATTTTAAATTCCTAAAATCATATCTGGAGAATTTGGTTTCCTACCCACTTTAGCTTATCTCTAAATATAAATTTCAAGAAGACTTTTTTGTAAACTTGTTCATTGAAATTTTTTATTTCAAGCCAGATAGATGGAAAAAAAGATTCCCCTACCAAACTCTGGTCGTTCCATCCTCATCTCAACTGTTCTTCTAAACCTTCCAACTCACTAGATGTTCCTTTATTCATTAGTGGTGGACAACATCGGCATGATTATAATTAATTCCTTTTGTGAGGGAACATTTAATGAAGGAAGCTCCCAACTTGTCTTTTAGTTTTGGCGTAACTATGATATTTGTCCTGTGCTTTTAGATTGTAGTTATTTTCTGTATTCTTTCCTTTTTCTCAATTCAAGATCAGTTTCTTGCAAAAAGAAAACAAGAGCTTTTCATGATTGGCAGCGGCAGTAAAATAAAATTTTGGGACTGCCCGCACTTAAATATTGGCTGGCCTCCCCAGACGTTTCCTTCTTTCCGATAACAAAAATTCCATCACTAGTTCATACCTCGAAGTGCATCATCTCCAAAAAGGGATAGAACCTCAATCTTAGAAGAAATCTGAATGTCTCTTAGGCGCAATAATAGAACTCTCTCACGAACATCCTTAACTTAAAGAAACATCTCAATGGCATGTTTTCTTCACTTGCCCATATGCTTCTAATTTTTGTGTTTGCACTTTCAAGTGGGCTTCTTAACGGCATCCAAAGCAACCTTTCCCTTATCTCTTCCCTCTAAAATGGAATAGTGTAGTTTTATTTGAGCAAGAAAAACCTTTGATTATTTTTGGCAAAATATTCTTTAAACTTTTTTTTTTTGAAACAAGGTAACCACGCCCATCCTTAGGCCCTTATTCTTTAAACTTGAGGAAACTAAAGGACAACCCATAAAACAGATCCTCCTCAAGTAAGGTCGTTGGCAAAATATTCTTCTTTCTCGTTGTCACTTTATGTAACTTCCATAGAGTGGTTCTTTCCCTCTCTTTTTTTGAGTTCTACAACAATTGAGGGAGGGGGATTCGAATTCATGCACTGTTGGACACTGGGTACACACTTATGGTGCTCAGCTAGCTCTGGTTGGTGCTTCTCTCCCCTCTTTTTGTGTGTAAATTTTATTTAATCATTGAAATTGTATATTCTTATAGAAAAAGTAAAGAAAATCATAGAAGAAAAGGCTTTTCTGCTTTGATGAATGGAATTCAAAGTTTGTAGGTTCATTTTCTTACTTTTCTTGAAAATGGAATGTCTATTTAGTGAAATAAACTTTGCGAGGATCAGCTTAGATATTTACTATTTAGCTTTTAGAATTGCCTCCTATAAAGCTATTCTTACTAAGGAACTTGTAGAATTAAGAAGTTGTGAGCTCAGTCCATGGTGACCACTTTCTTAGGAATTAATTTTTTTGCGGGTTTTCTTGACAACTAAATATTGTAGGGTCAAACGGTTATTTAAGAGAAGTCAAGGTGCACATAAGCTTACCAAACATTCATTGATATAAAAACATTACTTTCTATTTAATCAATTTATCCTGTTAAGAATGTCGTCCTTATATGCTAAAAAAGAAATTATGTGCAGATTCTCTCTTTATAACAATATTTTGGAGGTAATTGTTTAGTCTTAGCTATGCTGAAAATGGTGCCTTGACTGTTTATTGTTTAGGGAGTGAGTACAATTTATTTTTAGGTGACTTCTATGCAATAAATTATGCTTCTCAACTACCTCTTGGTCATTGGGAAATTGTTTAGTGTTAGCTTTGGTGAAGTTGGTTCATTCAAGAGCCAATGCATTTCTCCCCCAATTTCTCTATTTTTTGATACTTCTGTATTTGTACTTTTGAAACATAGATGACAATGCCATGGCCTTTTGGTTGTTTGTTACCGTGGAATTCTATTTTGAATTTCTGTTCTTTTCTTGTTTTAAATATTGCTATTTTGTAAATGAAAAATTTACAATTCTAGAAACATCTTTTAAATTGTTGATTTTTGTTCTAAATTCATATTATTCCTTCTTTCCAGAATGAGGCTGTTTTGAAGGCATGTTCCGAGCCACCTCCGGCTAAATCTTCAGGAGATAAAATTAGCTAAATCGGAAATAATGATCAAGAACTCCATATGAGGATCCAAAAGGATTTGCCAACTTCGACATTGCAGTGTCAGTTTCTTTCCTTATTTAGGCCTTTTAGTAAGGAAGAGTAGACATGAAGTAGATTTTAGCGATGTCAAATGTTTTCATTCTCATATGTAAGTGATGACGATACACTATTGTGCAATTCCTCACCTGGAGTTTCACATAATTTTTATTCAGGATTTTGAGTTTTTCTTGGCCCTTGCTTCATTATGAATGGCTCTTGTCTTTCAGTAAAAATATTTGGTATTTAGCTTTCTGAGCATATTCACTATTGACGTTTAGGCTGAAAATATCTGAACTGGAGAAGGCAAGCCTCGAAGAAAAAGTAAATCCTTTCTATTCAGTTTTGTGCAGTGTATTCTTAACAGGTTGATTAGAATAAGCCTTCCAGGTAGGTGGATGGAAGATGTAACTATGTGCACTCTTATTATATTGCTTACTCCTCACTCCTTTATGTTGGACTGGCAGAAAATATGAATATGACATATTGGTGCTATCCAAACTCTTATGAGGTAACAGGTCGGAAGAAAGCAATAGGTATTATGATTTAATCCTCAGTTGAAAAACCTTGACTTGTATTGTTTTGAATGTGACTGATATGAACTGTACGTGCCGTTCTAATTTGTTACTCCTGGG

mRNA sequence

GTTATAGTAATTTTATGAGTGATGTTGGAGAGAAAGGTATTTATCAGTATTAGGGTTTGTGAAGCATTTGGGGGGTCGCAGTGTGAGGGAGATGGCGGGTGCTTTTTGGGGGACTCGGATTTTGGAGATTGTGAAGAAGCACGACTCTGGAGGTAAAGTCTGGAAGAGAGTTAAGCTCACCACTACTCGCAAAGCCAACGCCAAGAAAAGGCTTCTTCGTGTTTGGCAGAATGAGGCTGTTTTGAAGGCATGTTCCGAGCCACCTCCGGCTAAATCTTCAGGAGATAAAATTAGCTAAATCGGAAATAATGATCAAGAACTCCATATGAGGATCCAAAAGGATTTGCCAACTTCGACATTGCAGTGTCAGTTTCTTTCCTTATTTAGGCCTTTTAGTAAGGAAGAGTAGACATGAAGTAGATTTTAGCGATGTCAAATGTTTTCATTCTCATATGTAAGTGATGACGATACACTATTGTGCAATTCCTCACCTGGAGTTTCACATAATTTTTATTCAGGATTTTGAGTTTTTCTTGGCCCTTGCTTCATTATGAATGGCTCTTGTCTTTCAGTAAAAATATTTGGTATTTAGCTTTCTGAGCATATTCACTATTGACGTTTAGGCTGAAAATATCTGAACTGGAGAAGGCAAGCCTCGAAGAAAAAGTAAATCCTTTCTATTCAGTTTTGTGCAGTGTATTCTTAACAGGTTGATTAGAATAAGCCTTCCAGGTAGGTGGATGGAAGATGTAACTATGTGCACTCTTATTATATTGCTTACTCCTCACTCCTTTATGTTGGACTGGCAGAAAATATGAATATGACATATTGGTGCTATCCAAACTCTTATGAGGTAACAGGTCGGAAGAAAGCAATAGGTATTATGATTTAATCCTCAGTTGAAAAACCTTGACTTGTATTGTTTTGAATGTGACTGATATGAACTGTACGTGCCGTTCTAATTTGTTACTCCTGGG

Coding sequence (CDS)

ATGGCGGGTGCTTTTTGGGGGACTCGGATTTTGGAGATTGTGAAGAAGCACGACTCTGGAGGTAAAGTCTGGAAGAGAGTTAAGCTCACCACTACTCGCAAAGCCAACGCCAAGAAAAGGCTTCTTCGTGTTTGGCAGAATGAGGCTGTTTTGAAGGCATGTTCCGAGCCACCTCCGGCTAAATCTTCAGGAGATAAAATTAGCTAA

Protein sequence

MAGAFWGTRILEIVKKHDSGGKVWKRVKLTTTRKANAKKRLLRVWQNEAVLKACSEPPPAKSSGDKIS

Homology

[Close]

BLAST of Sed0025765 vs. NCBI nr
Match: KAG6576111.1 (hypothetical protein SDJN03_26750, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 134.4 bits (337), Expect = 3.6e-28
Identity = 64/68 (94.12%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MAGAFWGTRILEIVKKHDSGGKVWKRVKLTTTRKANAKKRLLRVWQNEAVLKACSEPPPA 60
          MAGAFWGTR+LEIVKKHDSGG VWKR+KLTTTRKANAKKRLLRVWQNEAVLKACSEPPP 
Sbjct: 1  MAGAFWGTRVLEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLKACSEPPPP 60

Query: 61 KSSGDKIS 69
          KSSGDKIS
Sbjct: 61 KSSGDKIS 68

[Close]

BLAST of Sed0025765 vs. NCBI nr
Match: KAG7014631.1 (hypothetical protein SDJN02_24810, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 134.4 bits (337), Expect = 3.6e-28
Identity = 64/68 (94.12%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MAGAFWGTRILEIVKKHDSGGKVWKRVKLTTTRKANAKKRLLRVWQNEAVLKACSEPPPA 60
          MAGAFWGTR+LEIVKKHDSGG VWKR+KLTTTRKANAKKRLLRVWQNEAVLKACSEPPP 
Sbjct: 25 MAGAFWGTRVLEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLKACSEPPPP 84

Query: 61 KSSGDKIS 69
          KSSGDKIS
Sbjct: 85 KSSGDKIS 92

[Close]

BLAST of Sed0025765 vs. NCBI nr
Match: XP_038875024.1 (uncharacterized protein LOC120067546 [Benincasa hispida])

HSP 1 Score: 134.4 bits (337), Expect = 3.6e-28
Identity = 64/68 (94.12%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MAGAFWGTRILEIVKKHDSGGKVWKRVKLTTTRKANAKKRLLRVWQNEAVLKACSEPPPA 60
          MAGAFWGTR+LEIVKKHDSGG VWKR+KLTTTRKANAKKRLLRVWQNEAVLKACSEPPP 
Sbjct: 1  MAGAFWGTRVLEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLKACSEPPPP 60

Query: 61 KSSGDKIS 69
          KSSGDKIS
Sbjct: 61 KSSGDKIS 68

[Close]

BLAST of Sed0025765 vs. NCBI nr
Match: XP_023515314.1 (uncharacterized protein LOC111779382 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132.1 bits (331), Expect = 1.8e-27
Identity = 63/68 (92.65%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1  MAGAFWGTRILEIVKKHDSGGKVWKRVKLTTTRKANAKKRLLRVWQNEAVLKACSEPPPA 60
          MAGAFWGTR+LEIVKKHDSGG VWKR+KLTTTRKANAKKRLLRVWQNEAVLKACSEPPP 
Sbjct: 1  MAGAFWGTRVLEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLKACSEPPPT 60

Query: 61 KSSGDKIS 69
          KSSGD IS
Sbjct: 61 KSSGDGIS 68

[Close]

BLAST of Sed0025765 vs. NCBI nr
Match: XP_022960352.1 (uncharacterized protein LOC111461104 [Cucurbita moschata])

HSP 1 Score: 131.7 bits (330), Expect = 2.4e-27
Identity = 63/68 (92.65%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1  MAGAFWGTRILEIVKKHDSGGKVWKRVKLTTTRKANAKKRLLRVWQNEAVLKACSEPPPA 60
          MAGAFWGTR+LEIVKKHDSGG VWKR+KLTTTRKANAKKRLLRVWQNEAVLKACSEPPP 
Sbjct: 1  MAGAFWGTRVLEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLKACSEPPPP 60

Query: 61 KSSGDKIS 69
          KSSGD IS
Sbjct: 61 KSSGDGIS 68

[Close]

BLAST of Sed0025765 vs. ExPASy TrEMBL
Match: A0A6J1H761 (uncharacterized protein LOC111461104 OS=Cucurbita moschata OX=3662 GN=LOC111461104 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.1e-27
Identity = 63/68 (92.65%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1  MAGAFWGTRILEIVKKHDSGGKVWKRVKLTTTRKANAKKRLLRVWQNEAVLKACSEPPPA 60
          MAGAFWGTR+LEIVKKHDSGG VWKR+KLTTTRKANAKKRLLRVWQNEAVLKACSEPPP 
Sbjct: 1  MAGAFWGTRVLEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLKACSEPPPP 60

Query: 61 KSSGDKIS 69
          KSSGD IS
Sbjct: 61 KSSGDGIS 68

[Close]

BLAST of Sed0025765 vs. ExPASy TrEMBL
Match: A0A1S3CB86 (uncharacterized protein LOC103498876 OS=Cucumis melo OX=3656 GN=LOC103498876 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.5e-27
Identity = 62/67 (92.54%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1  MAGAFWGTRILEIVKKHDSGGKVWKRVKLTTTRKANAKKRLLRVWQNEAVLKACSEPPPA 60
          MAGAFWGTR+LEIVKKHDSGG VWKR+KLTTTRKANAKKRL RVWQNEAVLKACSEPPP 
Sbjct: 1  MAGAFWGTRVLEIVKKHDSGGLVWKRIKLTTTRKANAKKRLHRVWQNEAVLKACSEPPPP 60

Query: 61 KSSGDKI 68
          KSSGDKI
Sbjct: 61 KSSGDKI 67

[Close]

BLAST of Sed0025765 vs. ExPASy TrEMBL
Match: A0A0A0KDH2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G092000 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.3e-27
Identity = 62/68 (91.18%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 1  MAGAFWGTRILEIVKKHDSGGKVWKRVKLTTTRKANAKKRLLRVWQNEAVLKACSEPPPA 60
          MAGAFWGTR+LEIVKKHDSGG VWKR+KLTTTRKANAKKRL RVWQNEAVLKACSEPPP 
Sbjct: 1  MAGAFWGTRVLEIVKKHDSGGLVWKRIKLTTTRKANAKKRLHRVWQNEAVLKACSEPPPP 60

Query: 61 KSSGDKIS 69
          KSSGD IS
Sbjct: 61 KSSGDNIS 68

[Close]

BLAST of Sed0025765 vs. ExPASy TrEMBL
Match: A0A6J1KU88 (uncharacterized protein LOC111497673 OS=Cucurbita maxima OX=3661 GN=LOC111497673 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.1e-26
Identity = 61/68 (89.71%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 1  MAGAFWGTRILEIVKKHDSGGKVWKRVKLTTTRKANAKKRLLRVWQNEAVLKACSEPPPA 60
          MAGAFWGTR+LEIVKKHDSGG VWKR+KLTTTRKANAKKRLLRVWQNEAVLKACSEPPP 
Sbjct: 1  MAGAFWGTRVLEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLKACSEPPPP 60

Query: 61 KSSGDKIS 69
          KSS D I+
Sbjct: 61 KSSRDGIN 68

[Close]

BLAST of Sed0025765 vs. ExPASy TrEMBL
Match: A0A6J1D5J5 (uncharacterized protein LOC111017505 OS=Momordica charantia OX=3673 GN=LOC111017505 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 6.2e-26
Identity = 59/64 (92.19%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  MAGAFWGTRILEIVKKHDSGGKVWKRVKLTTTRKANAKKRLLRVWQNEAVLKACSEPPPA 60
          MAGAFWGTR+LEIVKKHDSGG VWKR+KLTTTRKANAKKRLLRVWQNEAVL+ACSEPPP 
Sbjct: 1  MAGAFWGTRVLEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLRACSEPPPP 60

Query: 61 KSSG 65
          KSSG
Sbjct: 61 KSSG 64

[Close]

BLAST of Sed0025765 vs. TAIR 10
Match: AT1G27435.1 (unknown protein; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 98.6 bits (244), Expect = 2.1e-21
Identity = 48/69 (69.57%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 3  GAFWGTRILEIVKKHDSGGKVWKRVKLTTTRKANAKKRLLRVWQNEAVLKACSE---PPP 62
          GAFWGTR++E+VKKHDSGG +WKR+KLT TRKANAK RL RVWQNEAVL+AC E   P P
Sbjct: 6  GAFWGTRVMELVKKHDSGGLLWKRIKLTPTRKANAKTRLRRVWQNEAVLRACGESDAPNP 65

Query: 63 AKSSGDKIS 69
            +S  K S
Sbjct: 66 PGASNTKSS 74

The following BLAST results are available for this feature:

BLAST of Sed0025765 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6576111.1	3.6e-28	94.12	hypothetical protein SDJN03_26750, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7014631.1	3.6e-28	94.12	hypothetical protein SDJN02_24810, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_038875024.1	3.6e-28	94.12	uncharacterized protein LOC120067546 [Benincasa hispida]	[more]
XP_023515314.1	1.8e-27	92.65	uncharacterized protein LOC111779382 [Cucurbita pepo subsp. pepo]	[more]
XP_022960352.1	2.4e-27	92.65	uncharacterized protein LOC111461104 [Cucurbita moschata]	[more]

BLAST of Sed0025765 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0025765 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H761	1.1e-27	92.65	uncharacterized protein LOC111461104 OS=Cucurbita moschata OX=3662 GN=LOC1114611...	[more]
A0A1S3CB86	2.5e-27	92.54	uncharacterized protein LOC103498876 OS=Cucumis melo OX=3656 GN=LOC103498876 PE=...	[more]
A0A0A0KDH2	4.3e-27	91.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G092000 PE=4 SV=1	[more]
A0A6J1KU88	2.1e-26	89.71	uncharacterized protein LOC111497673 OS=Cucurbita maxima OX=3661 GN=LOC111497673...	[more]
A0A6J1D5J5	6.2e-26	92.19	uncharacterized protein LOC111017505 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]

BLAST of Sed0025765 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G27435.1	2.1e-21	69.57	unknown protein; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37703	RIBOSOMAL PROTEIN L31-RELATED	coord: 2..64
None	No IPR available	PANTHER	PTHR37703:SF2	RIBOSOMAL PROTEIN L31-RELATED	coord: 2..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0025765.1	Sed0025765.1	mRNA