Sed0025738 (gene) Chayote v1

Overview


Name	Sed0025738
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Dynein light chain
Location	LG07: 11291142 .. 11292116 (-)
RNA-Seq Expression	Sed0025738
Synteny	Sed0025738

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGAAGGCAAAGCTTTGGTGCAGGACACAGATATGCCTAACAAGATGCAGATCCAAGCCATGGATGCTGCTTCTAAAGCTCTGGATCTCTATGATGTTGTTGACTGCAAATCCATTGCTGCCCACATCAAAAAGGTTCTCTTCTCTCTCCATCTCTCATTTCTCATGTACAACAAAAAAGGAAAGGAAAGATCTTTTTTGGCAGCTACCTGCTCATTATAATCAAATGACTTGATTCCATCAGTTCCTTGATTGAATCCAAGTAATTTCAGCTAATTGTAAGCAGATAGATTATGAGCAATAAGTTCAACAGATTGATGAAAACAAATGCATAAAAATTTGCTATTGATGAAATATTTTAGAAAAAGTGTTATAATTAAAGGGTTGGTGACGTGTTGATTGGTTTGCTGAACTTTCACGATCACCAATTTAATCTTAAAAAGCGGTGTTTAGTTGTTCATCTTTGTAAGGTTTGTAGTCTTTCTCTCCAATTTAAACTAAAAGATTAAGACCTTCACGATCACCAATTCAATCCTAAACACCGGTTTTTGGTTGTCCATCTTTGTAAGGTTTGTAGTCTTCTCTCCAATTTAAACTAAAAAATTAAGACCCATTTAATAACCATTTTATATTTAGTTTTTTATTTTTGAAATTTAACCCTATTACAACTAGCATAGCGTCTGTTTTTCTTTGCTTATATATCTACATCTTATCTATATTTTCTACCATTTGGCGGTTCTTATTTCTGAGTGAAAAAGAGAAGAGGTGGTAAGGGAATCTCATGTTTTGATTTCTGAACTTGTTTGGTTTTTGGATTTGTAGGATTTTGACAACAGATATGGGAGTGGATGGCAATGTGTGGTGGGCTCAAATTTTGGTTGTTTCTTCACCCACTCCAAAGGCTCTTTCATCTACTTCAAACTGGGGACTCTTAACTTTCTCATCTTCAAAGGGGTGGCTTCTTCAGCCTAG

mRNA sequence

ATGTTGGAAGGCAAAGCTTTGGTGCAGGACACAGATATGCCTAACAAGATGCAGATCCAAGCCATGGATGCTGCTTCTAAAGCTCTGGATCTCTATGATGTTGTTGACTGCAAATCCATTGCTGCCCACATCAAAAAGGATTTTGACAACAGATATGGGAGTGGATGGCAATGTGTGGTGGGCTCAAATTTTGGTTGTTTCTTCACCCACTCCAAAGGCTCTTTCATCTACTTCAAACTGGGGACTCTTAACTTTCTCATCTTCAAAGGGGTGGCTTCTTCAGCCTAG

Coding sequence (CDS)

ATGTTGGAAGGCAAAGCTTTGGTGCAGGACACAGATATGCCTAACAAGATGCAGATCCAAGCCATGGATGCTGCTTCTAAAGCTCTGGATCTCTATGATGTTGTTGACTGCAAATCCATTGCTGCCCACATCAAAAAGGATTTTGACAACAGATATGGGAGTGGATGGCAATGTGTGGTGGGCTCAAATTTTGGTTGTTTCTTCACCCACTCCAAAGGCTCTTTCATCTACTTCAAACTGGGGACTCTTAACTTTCTCATCTTCAAAGGGGTGGCTTCTTCAGCCTAG

Protein sequence

MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVASSA

Homology

[Close]

BLAST of Sed0025738 vs. NCBI nr
Match: XP_038897874.1 (dynein light chain LC6, flagellar outer arm-like [Benincasa hispida])

HSP 1 Score: 185.7 bits (470), Expect = 1.9e-43
Identity = 90/95 (94.74%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVV 60
          MLEGKAL+QDTDMP KMQIQAMDAASKALDLYDV DCKSIAAHIKKDFDNRYGSGWQCVV
Sbjct: 1  MLEGKALIQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVASSA 96
          GSNFGCFFTHSKGSFIYFKL TLNFLIFKGV SSA
Sbjct: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSA 95

[Close]

BLAST of Sed0025738 vs. NCBI nr
Match: XP_023513963.1 (dynein light chain LC6, flagellar outer arm-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 185.7 bits (470), Expect = 1.9e-43
Identity = 90/94 (95.74%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVV 60
          MLEGKA VQDTDMPNKMQIQAMDAASKALDLYDV DCKSIAAHIKKDFD+RYGSGWQCVV
Sbjct: 1  MLEGKASVQDTDMPNKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDHRYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVASS 95
          GSNFGCFFTHSKGSFIYFKLGTLNFLIFKGV SS
Sbjct: 61 GSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVTSS 94

[Close]

BLAST of Sed0025738 vs. NCBI nr
Match: XP_008462164.1 (PREDICTED: dynein light chain LC6, flagellar outer arm-like [Cucumis melo] >KAA0059304.1 dynein light chain LC6, flagellar outer arm-like [Cucumis melo var. makuwa] >TYK04024.1 dynein light chain LC6, flagellar outer arm-like [Cucumis melo var. makuwa])

HSP 1 Score: 184.9 bits (468), Expect = 3.3e-43
Identity = 90/95 (94.74%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVV 60
          MLEGKALVQDTDMP KMQIQAMDAASKALDLYDV DCKSIAAHIKKDFDN+YGSGWQCVV
Sbjct: 1  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVASSA 96
          GSNFGCFFTHSKGSFIYFKL TLNFLIFKGV SSA
Sbjct: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSA 95

[Close]

BLAST of Sed0025738 vs. NCBI nr
Match: XP_022964212.1 (dynein light chain LC6, flagellar outer arm-like isoform X1 [Cucurbita moschata] >XP_023000412.1 dynein light chain LC6, flagellar outer arm-like [Cucurbita maxima] >KAG6593463.1 hypothetical protein SDJN03_12939, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025803.1 hypothetical protein SDJN02_12301 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 183.7 bits (465), Expect = 7.3e-43
Identity = 89/94 (94.68%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVV 60
          MLEGKA VQDTDMP+KMQIQAMDAASKALDLYDV DCKSIAAHIKKDFD+RYGSGWQCVV
Sbjct: 1  MLEGKASVQDTDMPSKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDHRYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVASS 95
          GSNFGCFFTHSKGSFIYFKLGTLNFLIFKGV SS
Sbjct: 61 GSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVTSS 94

[Close]

BLAST of Sed0025738 vs. NCBI nr
Match: XP_011659570.1 (dynein light chain LC6, flagellar outer arm [Cucumis sativus] >KGN45379.1 hypothetical protein Csa_016911 [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 9.5e-43
Identity = 89/94 (94.68%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVV 60
          MLEGKALVQDTDMP KMQIQAMDAASKALDLYDV DCKSIAAHIKKDFDN+YGSGWQCVV
Sbjct: 1  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVASS 95
          GSNFGCFFTHSKGSFIYFKL TLNFLIFKGV SS
Sbjct: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSS 94

[Close]

BLAST of Sed0025738 vs. ExPASy Swiss-Prot
Match: O02414 (Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=1043166 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.6e-16
Identity = 42/89 (47.19%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVV 60
          M E KA++++ DMP  MQ  A+D A++AL+ +++   K IAA+IKK+FD +Y   W C+V
Sbjct: 1  MSERKAVIKNADMPEDMQQDAVDCATQALEKFNIE--KDIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLGTLNFLIFK 90
          G NFG + TH    FIYF LG +  L+FK
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAVLLFK 87

[Close]

BLAST of Sed0025738 vs. ExPASy Swiss-Prot
Match: Q22799 (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.7e-16
Identity = 41/89 (46.07%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVV 60
          M++ KA++++ DM + MQ  A+D A++AL+ Y++   K IAA+IKK+FD +Y   W C+V
Sbjct: 1  MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLGTLNFLIFK 90
          G NFG + TH    FIYF LG +  L+FK
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFK 87

[Close]

BLAST of Sed0025738 vs. ExPASy Swiss-Prot
Match: P61285 (Dynein light chain 1, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL1 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.6e-16
Identity = 40/89 (44.94%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVV 60
          M + KA++++ DM  +MQ  +++ A++AL+ Y++   K IAAHIKK+FD +Y   W C+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKKEFDKKYNPTWHCIV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLGTLNFLIFK 90
          G NFG + TH    FIYF LG +  L+FK
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFK 87

[Close]

BLAST of Sed0025738 vs. ExPASy Swiss-Prot
Match: Q24117 (Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=ctp PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.6e-16
Identity = 41/89 (46.07%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVV 60
          M + KA++++ DM  +MQ  A+D A++AL+ Y++   K IAA+IKK+FD +Y   W C+V
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLGTLNFLIFK 90
          G NFG + TH    FIYF LG +  L+FK
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFK 87

[Close]

BLAST of Sed0025738 vs. ExPASy Swiss-Prot
Match: P63167 (Dynein light chain 1, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL1 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.6e-16
Identity = 40/89 (44.94%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVV 60
          M + KA++++ DM  +MQ  +++ A++AL+ Y++   K IAAHIKK+FD +Y   W C+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKKEFDKKYNPTWHCIV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLGTLNFLIFK 90
          G NFG + TH    FIYF LG +  L+FK
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFK 87

[Close]

BLAST of Sed0025738 vs. ExPASy TrEMBL
Match: A0A5A7UW48 (Dynein light chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002230 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.6e-43
Identity = 90/95 (94.74%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVV 60
          MLEGKALVQDTDMP KMQIQAMDAASKALDLYDV DCKSIAAHIKKDFDN+YGSGWQCVV
Sbjct: 1  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVASSA 96
          GSNFGCFFTHSKGSFIYFKL TLNFLIFKGV SSA
Sbjct: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSA 95

[Close]

BLAST of Sed0025738 vs. ExPASy TrEMBL
Match: A0A1S3CGU5 (Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103500588 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.6e-43
Identity = 90/95 (94.74%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVV 60
          MLEGKALVQDTDMP KMQIQAMDAASKALDLYDV DCKSIAAHIKKDFDN+YGSGWQCVV
Sbjct: 1  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVASSA 96
          GSNFGCFFTHSKGSFIYFKL TLNFLIFKGV SSA
Sbjct: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSA 95

[Close]

BLAST of Sed0025738 vs. ExPASy TrEMBL
Match: A0A6J1KDK4 (Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111494671 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.5e-43
Identity = 89/94 (94.68%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVV 60
          MLEGKA VQDTDMP+KMQIQAMDAASKALDLYDV DCKSIAAHIKKDFD+RYGSGWQCVV
Sbjct: 1  MLEGKASVQDTDMPSKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDHRYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVASS 95
          GSNFGCFFTHSKGSFIYFKLGTLNFLIFKGV SS
Sbjct: 61 GSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVTSS 94

[Close]

BLAST of Sed0025738 vs. ExPASy TrEMBL
Match: A0A6J1HH84 (Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111464299 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.5e-43
Identity = 89/94 (94.68%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVV 60
          MLEGKA VQDTDMP+KMQIQAMDAASKALDLYDV DCKSIAAHIKKDFD+RYGSGWQCVV
Sbjct: 1  MLEGKASVQDTDMPSKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDHRYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVASS 95
          GSNFGCFFTHSKGSFIYFKLGTLNFLIFKGV SS
Sbjct: 61 GSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVTSS 94

[Close]

BLAST of Sed0025738 vs. ExPASy TrEMBL
Match: A0A0A0K947 (Dynein light chain OS=Cucumis sativus OX=3659 GN=Csa_7G446940 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 4.6e-43
Identity = 89/94 (94.68%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVV 60
          MLEGKALVQDTDMP KMQIQAMDAASKALDLYDV DCKSIAAHIKKDFDN+YGSGWQCVV
Sbjct: 1  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVASS 95
          GSNFGCFFTHSKGSFIYFKL TLNFLIFKGV SS
Sbjct: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSS 94

[Close]

BLAST of Sed0025738 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 155.6 bits (392), Expect = 2.0e-38
Identity = 73/93 (78.49%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVV 60
          MLEGKA+V+D+DMP KMQ+QAM  AS+ALDL+DV DCKSIA HIKK+FD RYGSGWQCVV
Sbjct: 1  MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVAS 94
          GSNFGCFFTHSKG+FIYF+L TL FLIFKG ++
Sbjct: 61 GSNFGCFFTHSKGTFIYFQLETLKFLIFKGAST 93

[Close]

BLAST of Sed0025738 vs. TAIR 10
Match: AT3G16120.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 151.0 bits (380), Expect = 4.9e-37
Identity = 72/90 (80.00%), Postives = 81/90 (90.00%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVV 60
          MLEGKA V++TDMP KMQ+QAM  AS++LDL+DV D  SIAAHIKK+FD RYGSGWQCVV
Sbjct: 1  MLEGKAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLGTLNFLIFKG 91
          G+NFGCFFTHSKG+FIYF LGTLNFLIFKG
Sbjct: 61 GTNFGCFFTHSKGTFIYFHLGTLNFLIFKG 90

[Close]

BLAST of Sed0025738 vs. TAIR 10
Match: AT4G27360.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 108.2 bits (269), Expect = 3.6e-24
Identity = 51/90 (56.67%), Postives = 65/90 (72.22%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVV 60
          MLEGKA++ DTDM   M+  A+  ASKALD +DV +   IA  IKK+FD  YGSGWQC+V
Sbjct: 1  MLEGKAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLGTLNFLIFKG 91
          G++FG F TH  G FI+F +G+L  L+FKG
Sbjct: 61 GTHFGSFVTHCSGCFIHFSVGSLTILLFKG 90

[Close]

BLAST of Sed0025738 vs. TAIR 10
Match: AT1G52240.1 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 100.1 bits (248), Expect = 9.9e-22
Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCV 60
          MLEGKA+V+D+DMP KMQ+QAM  AS+ALDL+DV DCKSIA HIKK+FD RYGSGWQCV
Sbjct: 1  MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCV 59

[Close]

BLAST of Sed0025738 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-14
Identity = 37/78 (47.44%), Postives = 46/78 (58.97%), Query Frame = 0


Query: 12  DMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHS 71
           DMP  MQ  A   A   LD  +    K +A ++KK+FD  YG  W C+VGS+FG F THS
Sbjct: 123 DMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFGSFVTHS 182

Query: 72  KGSFIYFKLGTLNFLIFK 90
            G FIYF +  L  L+FK
Sbjct: 183 TGCFIYFSMDKLYVLLFK 200

The following BLAST results are available for this feature:

BLAST of Sed0025738 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897874.1	1.9e-43	94.74	dynein light chain LC6, flagellar outer arm-like [Benincasa hispida]	[more]
XP_023513963.1	1.9e-43	95.74	dynein light chain LC6, flagellar outer arm-like [Cucurbita pepo subsp. pepo]	[more]
XP_008462164.1	3.3e-43	94.74	PREDICTED: dynein light chain LC6, flagellar outer arm-like [Cucumis melo] >KAA0...	[more]
XP_022964212.1	7.3e-43	94.68	dynein light chain LC6, flagellar outer arm-like isoform X1 [Cucurbita moschata]...	[more]
XP_011659570.1	9.5e-43	94.68	dynein light chain LC6, flagellar outer arm [Cucumis sativus] >KGN45379.1 hypoth...	[more]

BLAST of Sed0025738 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O02414	1.6e-16	47.19	Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=10431...	[more]
Q22799	2.7e-16	46.07	Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=...	[more]
P61285	4.6e-16	44.94	Dynein light chain 1, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL1 PE=1 SV=1	[more]
Q24117	4.6e-16	46.07	Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=ctp PE=1...	[more]
P63167	4.6e-16	44.94	Dynein light chain 1, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL1 PE=1 SV=1	[more]

BLAST of Sed0025738 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UW48	1.6e-43	94.74	Dynein light chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G0...	[more]
A0A1S3CGU5	1.6e-43	94.74	Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103500588 PE=3 SV=1	[more]
A0A6J1KDK4	3.5e-43	94.68	Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111494671 PE=3 SV=1	[more]
A0A6J1HH84	3.5e-43	94.68	Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111464299 PE=3 SV=1	[more]
A0A0A0K947	4.6e-43	94.68	Dynein light chain OS=Cucumis sativus OX=3659 GN=Csa_7G446940 PE=3 SV=1	[more]

BLAST of Sed0025738 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52240.2	2.0e-38	78.49	RHO guanyl-nucleotide exchange factor 11	[more]
AT3G16120.1	4.9e-37	80.00	Dynein light chain type 1 family protein	[more]
AT4G27360.1	3.6e-24	56.67	Dynein light chain type 1 family protein	[more]
AT1G52240.1	9.9e-22	77.97	RHO guanyl-nucleotide exchange factor 11	[more]
AT5G20110.1	1.2e-14	47.44	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 1..90 e-value: 1.5E-41 score: 154.0
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 5..89 e-value: 2.5E-32 score: 111.1
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 1..91
IPR037177	Dynein light chain superfamily	GENE3D	3.30.740.10	Protein Inhibitor Of Neuronal Nitric Oxide Synthase;	coord: 2..90 e-value: 8.0E-32 score: 111.1
IPR037177	Dynein light chain superfamily	SUPERFAMILY	54648	DLC	coord: 1..89
None	No IPR available	PANTHER	PTHR11886:SF78	DYNEIN LIGHT CHAIN	coord: 1..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0025738.1	Sed0025738.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
biological_process	GO:0050790	regulation of catalytic activity
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0030286	dynein complex
cellular_component	GO:0005874	microtubule
molecular_function	GO:0045505	dynein intermediate chain binding
molecular_function	GO:0051959	dynein light intermediate chain binding
molecular_function	GO:0005085	guanyl-nucleotide exchange factor activity