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Sed0025558 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGTCGGTAAGATTTCTGAATTTCTTACATCTTCTACTCAAACAAATTACGATTCTGTTCATTGGGATGATCAAAAGGGATTGATTAAACCCTAATGGGTGATTAGGCTTTAATAATCTATGAAATTTCATCTCTCGTTTGTATTTTTAGCAATCTGTGAGCACGGAAGTATAATAATCTATGAAAAATATGGAATTATCACTGTTGGTTTCTTTTCTCAAGTGTCACCTAGTTTGTTCAATGTATGTGTGGAATGTTAACTAGATTTACTTTTCAACCATTGTTCTCTGATTGGGGTGCTGTTAGATTGGATACATAGGAATTAGATTTTTTTATTATTATTATTTTTGATAATCTAAGTCAGCTTGCGTGCATTTTGACTATTGTCATGAAATATGTTAGTCTAAACCTACCACACTTGGTTGTCAAGAAAAATCGTTGGAAATTAATTTTTAAGTGATCACCAGAGATTGAATTCATCACCTGTTTGTTCTCCAATGAACTAGATTCTTCGCGAACACCTTTTTTTCAAGTTTAACAATAACATTTGGAAGTTGGGGGATACATACCAATGTACTTTGGCTTTGTGGGTACCATTCTTGGAATGAAATGTTAGTGTATTTCAACATTCTACAATTAGAATAAGTTGGTGTAGTGTAGACAAATCGATGGCAACATTTATTTATAGCTCCACTGTTCAAGAAAACCATGGGGGAGGCTTTTAGAAGTAATGAATGAGCAGCCTTGGCATTGCAGGCTGTCCTTTATCTGAAGGCATTTACTTGCAAAGAGAGATCACATTTAAAAATTTACTACTGGTTGTATAGGGTCAAGGCGGTAGATATATCTCGACAATAATTGAGGTGCGCACAAGTTGGCCCGATCAGTCACGGATATAAAAAAGAAAACTTTAAACGTTTCTTAAAAATGTTAGTACCATGATTAATAAAGTCTAATGTAGATATCAATTATTATTGCATTGTTACAGCAGGACAAGGGTCGACCACTGCCAAAGTTTGGTGAATGGGACGTAAATAACCCTGCATCTGCAGAAGGATTTACGGTCATATTTAACAAGGCTAGAAATGAGAAGAAAACAACCACTGGAACTCCTCTCAATATGGTTTCACCACAAAGTAATGAACCAATCTATAACAATGAAAGCTACCCTCATTCTCCTCCACGCAAGGTCTGTTTTTAATACAAGACTTGAGAATCAATTTGTTCTTCTTCATATCTTTAACATAATCTCTTTTTTTTGTATTTGGATTGCAGAAAAAGTGGTTTTGCTGTGGTTGA ATGGCGTCGCAGGACAAGGGTCGACCACTGCCAAAGTTTGGTGAATGGGACGTAAATAACCCTGCATCTGCAGAAGGATTTACGGTCATATTTAACAAGGCTAGAAATGAGAAGAAAACAACCACTGGAACTCCTCTCAATATGGTTTCACCACAAAGTAATGAACCAATCTATAACAATGAAAGCTACCCTCATTCTCCTCCACGCAAGAAAAAGTGGTTTTGCTGTGGTTGA ATGGCGTCGCAGGACAAGGGTCGACCACTGCCAAAGTTTGGTGAATGGGACGTAAATAACCCTGCATCTGCAGAAGGATTTACGGTCATATTTAACAAGGCTAGAAATGAGAAGAAAACAACCACTGGAACTCCTCTCAATATGGTTTCACCACAAAGTAATGAACCAATCTATAACAATGAAAGCTACCCTCATTCTCCTCCACGCAAGAAAAAGTGGTTTTGCTGTGGTTGA MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTTGTPLNMVSPQSNEPIYNNESYPHSPPRKKKWFCCG Homology
BLAST of Sed0025558 vs. NCBI nr
Match: XP_022954832.1 (RPM1-interacting protein 4-like [Cucurbita moschata] >XP_023542808.1 RPM1-interacting protein 4-like [Cucurbita pepo subsp. pepo] >KAG6573102.1 Protein NOI4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012289.1 RPM1-interacting protein 4 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 139.0 bits (349), Expect = 1.7e-29 Identity = 65/77 (84.42%), Postives = 69/77 (89.61%), Query Frame = 0
BLAST of Sed0025558 vs. NCBI nr
Match: XP_022994173.1 (RPM1-interacting protein 4-like [Cucurbita maxima]) HSP 1 Score: 136.0 bits (341), Expect = 1.4e-28 Identity = 64/77 (83.12%), Postives = 68/77 (88.31%), Query Frame = 0
BLAST of Sed0025558 vs. NCBI nr
Match: XP_008439256.1 (PREDICTED: RPM1-interacting protein 4 isoform X1 [Cucumis melo]) HSP 1 Score: 136.0 bits (341), Expect = 1.4e-28 Identity = 62/77 (80.52%), Postives = 67/77 (87.01%), Query Frame = 0
BLAST of Sed0025558 vs. NCBI nr
Match: XP_038894676.1 (protein NOI4 isoform X1 [Benincasa hispida]) HSP 1 Score: 135.6 bits (340), Expect = 1.8e-28 Identity = 63/77 (81.82%), Postives = 67/77 (87.01%), Query Frame = 0
BLAST of Sed0025558 vs. NCBI nr
Match: XP_004152507.2 (protein NOI4 [Cucumis sativus]) HSP 1 Score: 134.8 bits (338), Expect = 3.1e-28 Identity = 62/77 (80.52%), Postives = 67/77 (87.01%), Query Frame = 0
BLAST of Sed0025558 vs. ExPASy Swiss-Prot
Match: O22633 (Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1) HSP 1 Score: 85.1 bits (209), Expect = 3.7e-16 Identity = 45/74 (60.81%), Postives = 52/74 (70.27%), Query Frame = 0
BLAST of Sed0025558 vs. ExPASy Swiss-Prot
Match: Q8GYN5 (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1) HSP 1 Score: 52.0 bits (123), Expect = 3.5e-06 Identity = 26/64 (40.62%), Postives = 38/64 (59.38%), Query Frame = 0
BLAST of Sed0025558 vs. ExPASy TrEMBL
Match: A0A6J1GRZ4 (RPM1-interacting protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111456977 PE=4 SV=1) HSP 1 Score: 139.0 bits (349), Expect = 8.1e-30 Identity = 65/77 (84.42%), Postives = 69/77 (89.61%), Query Frame = 0
BLAST of Sed0025558 vs. ExPASy TrEMBL
Match: A0A6J1K4F5 (RPM1-interacting protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111489992 PE=4 SV=1) HSP 1 Score: 136.0 bits (341), Expect = 6.8e-29 Identity = 64/77 (83.12%), Postives = 68/77 (88.31%), Query Frame = 0
BLAST of Sed0025558 vs. ExPASy TrEMBL
Match: A0A1S3AZ04 (RPM1-interacting protein 4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484092 PE=4 SV=1) HSP 1 Score: 136.0 bits (341), Expect = 6.8e-29 Identity = 62/77 (80.52%), Postives = 67/77 (87.01%), Query Frame = 0
BLAST of Sed0025558 vs. ExPASy TrEMBL
Match: A0A0A0LRE5 (AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G050070 PE=4 SV=1) HSP 1 Score: 134.8 bits (338), Expect = 1.5e-28 Identity = 62/77 (80.52%), Postives = 67/77 (87.01%), Query Frame = 0
BLAST of Sed0025558 vs. ExPASy TrEMBL
Match: A0A1S3AYE6 (RPM1-interacting protein 4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484092 PE=4 SV=1) HSP 1 Score: 129.0 bits (323), Expect = 8.4e-27 Identity = 58/75 (77.33%), Postives = 64/75 (85.33%), Query Frame = 0
BLAST of Sed0025558 vs. TAIR 10
Match: AT5G63270.1 (RPM1-interacting protein 4 (RIN4) family protein ) HSP 1 Score: 90.1 bits (222), Expect = 8.3e-19 Identity = 45/77 (58.44%), Postives = 56/77 (72.73%), Query Frame = 0
BLAST of Sed0025558 vs. TAIR 10
Match: AT2G04410.1 (RPM1-interacting protein 4 (RIN4) family protein ) HSP 1 Score: 87.8 bits (216), Expect = 4.1e-18 Identity = 46/72 (63.89%), Postives = 50/72 (69.44%), Query Frame = 0
BLAST of Sed0025558 vs. TAIR 10
Match: AT3G48450.1 (RPM1-interacting protein 4 (RIN4) family protein ) HSP 1 Score: 85.5 bits (210), Expect = 2.0e-17 Identity = 46/87 (52.87%), Postives = 56/87 (64.37%), Query Frame = 0
BLAST of Sed0025558 vs. TAIR 10
Match: AT5G55850.3 (RPM1-interacting protein 4 (RIN4) family protein ) HSP 1 Score: 85.5 bits (210), Expect = 2.0e-17 Identity = 45/75 (60.00%), Postives = 53/75 (70.67%), Query Frame = 0
BLAST of Sed0025558 vs. TAIR 10
Match: AT5G55850.2 (RPM1-interacting protein 4 (RIN4) family protein ) HSP 1 Score: 76.6 bits (187), Expect = 9.5e-15 Identity = 34/37 (91.89%), Postives = 37/37 (100.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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