Sed0025558 (gene) Chayote v1

Overview
NameSed0025558
Typegene
OrganismSechium edule (Chayote v1)
DescriptionRPM1-interacting protein 4-like
LocationLG08: 37578260 .. 37579561 (+)
RNA-Seq ExpressionSed0025558
SyntenySed0025558
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCGGTAAGATTTCTGAATTTCTTACATCTTCTACTCAAACAAATTACGATTCTGTTCATTGGGATGATCAAAAGGGATTGATTAAACCCTAATGGGTGATTAGGCTTTAATAATCTATGAAATTTCATCTCTCGTTTGTATTTTTAGCAATCTGTGAGCACGGAAGTATAATAATCTATGAAAAATATGGAATTATCACTGTTGGTTTCTTTTCTCAAGTGTCACCTAGTTTGTTCAATGTATGTGTGGAATGTTAACTAGATTTACTTTTCAACCATTGTTCTCTGATTGGGGTGCTGTTAGATTGGATACATAGGAATTAGATTTTTTTATTATTATTATTTTTGATAATCTAAGTCAGCTTGCGTGCATTTTGACTATTGTCATGAAATATGTTAGTCTAAACCTACCACACTTGGTTGTCAAGAAAAATCGTTGGAAATTAATTTTTAAGTGATCACCAGAGATTGAATTCATCACCTGTTTGTTCTCCAATGAACTAGATTCTTCGCGAACACCTTTTTTTCAAGTTTAACAATAACATTTGGAAGTTGGGGGATACATACCAATGTACTTTGGCTTTGTGGGTACCATTCTTGGAATGAAATGTTAGTGTATTTCAACATTCTACAATTAGAATAAGTTGGTGTAGTGTAGACAAATCGATGGCAACATTTATTTATAGCTCCACTGTTCAAGAAAACCATGGGGGAGGCTTTTAGAAGTAATGAATGAGCAGCCTTGGCATTGCAGGCTGTCCTTTATCTGAAGGCATTTACTTGCAAAGAGAGATCACATTTAAAAATTTACTACTGGTTGTATAGGGTCAAGGCGGTAGATATATCTCGACAATAATTGAGGTGCGCACAAGTTGGCCCGATCAGTCACGGATATAAAAAAGAAAACTTTAAACGTTTCTTAAAAATGTTAGTACCATGATTAATAAAGTCTAATGTAGATATCAATTATTATTGCATTGTTACAGCAGGACAAGGGTCGACCACTGCCAAAGTTTGGTGAATGGGACGTAAATAACCCTGCATCTGCAGAAGGATTTACGGTCATATTTAACAAGGCTAGAAATGAGAAGAAAACAACCACTGGAACTCCTCTCAATATGGTTTCACCACAAAGTAATGAACCAATCTATAACAATGAAAGCTACCCTCATTCTCCTCCACGCAAGGTCTGTTTTTAATACAAGACTTGAGAATCAATTTGTTCTTCTTCATATCTTTAACATAATCTCTTTTTTTTGTATTTGGATTGCAGAAAAAGTGGTTTTGCTGTGGTTGA

mRNA sequence

ATGGCGTCGCAGGACAAGGGTCGACCACTGCCAAAGTTTGGTGAATGGGACGTAAATAACCCTGCATCTGCAGAAGGATTTACGGTCATATTTAACAAGGCTAGAAATGAGAAGAAAACAACCACTGGAACTCCTCTCAATATGGTTTCACCACAAAGTAATGAACCAATCTATAACAATGAAAGCTACCCTCATTCTCCTCCACGCAAGAAAAAGTGGTTTTGCTGTGGTTGA

Coding sequence (CDS)

ATGGCGTCGCAGGACAAGGGTCGACCACTGCCAAAGTTTGGTGAATGGGACGTAAATAACCCTGCATCTGCAGAAGGATTTACGGTCATATTTAACAAGGCTAGAAATGAGAAGAAAACAACCACTGGAACTCCTCTCAATATGGTTTCACCACAAAGTAATGAACCAATCTATAACAATGAAAGCTACCCTCATTCTCCTCCACGCAAGAAAAAGTGGTTTTGCTGTGGTTGA

Protein sequence

MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTTGTPLNMVSPQSNEPIYNNESYPHSPPRKKKWFCCG
Homology
BLAST of Sed0025558 vs. NCBI nr
Match: XP_022954832.1 (RPM1-interacting protein 4-like [Cucurbita moschata] >XP_023542808.1 RPM1-interacting protein 4-like [Cucurbita pepo subsp. pepo] >KAG6573102.1 Protein NOI4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012289.1 RPM1-interacting protein 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 139.0 bits (349), Expect = 1.7e-29
Identity = 65/77 (84.42%), Postives = 69/77 (89.61%), Query Frame = 0

Query: 1  MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTTGTPLNMVSPQSNEPIYNN 60
          MA QDKGRPLPKFGEWDVNNPASAEGFTVIFNKAR+EKK TTG+  NMVS QSNEP YNN
Sbjct: 1  MAPQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKK-TTGSVANMVSSQSNEPAYNN 60

Query: 61 ESYPHSPPRKKKWFCCG 78
          ES+P SPP KK+WFCCG
Sbjct: 61 ESFPQSPPPKKRWFCCG 76

BLAST of Sed0025558 vs. NCBI nr
Match: XP_022994173.1 (RPM1-interacting protein 4-like [Cucurbita maxima])

HSP 1 Score: 136.0 bits (341), Expect = 1.4e-28
Identity = 64/77 (83.12%), Postives = 68/77 (88.31%), Query Frame = 0

Query: 1  MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTTGTPLNMVSPQSNEPIYNN 60
          MA QDKG PLPKFGEWDVNNPASAEGFTVIFNKAR+EKK TTG+  NMVS QSNEP YNN
Sbjct: 1  MAPQDKGCPLPKFGEWDVNNPASAEGFTVIFNKARDEKK-TTGSVANMVSSQSNEPAYNN 60

Query: 61 ESYPHSPPRKKKWFCCG 78
          ES+P SPP KK+WFCCG
Sbjct: 61 ESFPQSPPPKKRWFCCG 76

BLAST of Sed0025558 vs. NCBI nr
Match: XP_008439256.1 (PREDICTED: RPM1-interacting protein 4 isoform X1 [Cucumis melo])

HSP 1 Score: 136.0 bits (341), Expect = 1.4e-28
Identity = 62/77 (80.52%), Postives = 67/77 (87.01%), Query Frame = 0

Query: 1  MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTTGTPLNMVSPQSNEPIYNN 60
          MASQD+GRPLPKFGEWDVNNPASAEGFTVIFNKARNEKK TTG   NMV  + NEP++NN
Sbjct: 1  MASQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKK-TTGNAANMVPKERNEPVFNN 60

Query: 61 ESYPHSPPRKKKWFCCG 78
          ESYP  PP KK+WFCCG
Sbjct: 61 ESYPQYPPPKKRWFCCG 76

BLAST of Sed0025558 vs. NCBI nr
Match: XP_038894676.1 (protein NOI4 isoform X1 [Benincasa hispida])

HSP 1 Score: 135.6 bits (340), Expect = 1.8e-28
Identity = 63/77 (81.82%), Postives = 67/77 (87.01%), Query Frame = 0

Query: 1  MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTTGTPLNMVSPQSNEPIYNN 60
          MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKK TTGT  N V  Q +EP++NN
Sbjct: 1  MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKK-TTGTAANKVPQQISEPVFNN 60

Query: 61 ESYPHSPPRKKKWFCCG 78
          ESYP  PP KK+WFCCG
Sbjct: 61 ESYPQYPPPKKRWFCCG 76

BLAST of Sed0025558 vs. NCBI nr
Match: XP_004152507.2 (protein NOI4 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 3.1e-28
Identity = 62/77 (80.52%), Postives = 67/77 (87.01%), Query Frame = 0

Query: 1   MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTTGTPLNMVSPQSNEPIYNN 60
           MASQDKGR LPKFG+WDVNNPASAEGFTVIFNKARNEKK TTGT  NMV  + NEP++NN
Sbjct: 59  MASQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKK-TTGTAANMVPQERNEPVFNN 118

Query: 61  ESYPHSPPRKKKWFCCG 78
           ESYP  PP KK+WFCCG
Sbjct: 119 ESYPQYPPPKKRWFCCG 134

BLAST of Sed0025558 vs. ExPASy Swiss-Prot
Match: O22633 (Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.7e-16
Identity = 45/74 (60.81%), Postives = 52/74 (70.27%), Query Frame = 0

Query: 5  DKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKT--TTGTPLNMVSPQSNEPIYNNES 64
          DKGRPLPKFGEWDVN+PASAEGFTVIFNKAR+EKKT    G+P      +S+E    +  
Sbjct: 3  DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSP-----GKSSEGHVKSGG 62

Query: 65 YPHSPPRKKKWFCC 77
             S P+ KKW CC
Sbjct: 63 GDPSKPQPKKWLCC 71

BLAST of Sed0025558 vs. ExPASy Swiss-Prot
Match: Q8GYN5 (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.5e-06
Identity = 26/64 (40.62%), Postives = 38/64 (59.38%), Query Frame = 0

Query: 3   SQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTTGTPLNMVSPQSNEPIYNNES 62
           S +K   +PKFG+WD NNP+SA+G+T IFNK R E+ +        VS  S  P + +  
Sbjct: 141 SPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGAN-----VSGSSRTPTHQSSR 199

Query: 63  YPHS 67
            P++
Sbjct: 201 NPNN 199

BLAST of Sed0025558 vs. ExPASy TrEMBL
Match: A0A6J1GRZ4 (RPM1-interacting protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111456977 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 8.1e-30
Identity = 65/77 (84.42%), Postives = 69/77 (89.61%), Query Frame = 0

Query: 1  MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTTGTPLNMVSPQSNEPIYNN 60
          MA QDKGRPLPKFGEWDVNNPASAEGFTVIFNKAR+EKK TTG+  NMVS QSNEP YNN
Sbjct: 1  MAPQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKK-TTGSVANMVSSQSNEPAYNN 60

Query: 61 ESYPHSPPRKKKWFCCG 78
          ES+P SPP KK+WFCCG
Sbjct: 61 ESFPQSPPPKKRWFCCG 76

BLAST of Sed0025558 vs. ExPASy TrEMBL
Match: A0A6J1K4F5 (RPM1-interacting protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111489992 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 6.8e-29
Identity = 64/77 (83.12%), Postives = 68/77 (88.31%), Query Frame = 0

Query: 1  MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTTGTPLNMVSPQSNEPIYNN 60
          MA QDKG PLPKFGEWDVNNPASAEGFTVIFNKAR+EKK TTG+  NMVS QSNEP YNN
Sbjct: 1  MAPQDKGCPLPKFGEWDVNNPASAEGFTVIFNKARDEKK-TTGSVANMVSSQSNEPAYNN 60

Query: 61 ESYPHSPPRKKKWFCCG 78
          ES+P SPP KK+WFCCG
Sbjct: 61 ESFPQSPPPKKRWFCCG 76

BLAST of Sed0025558 vs. ExPASy TrEMBL
Match: A0A1S3AZ04 (RPM1-interacting protein 4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484092 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 6.8e-29
Identity = 62/77 (80.52%), Postives = 67/77 (87.01%), Query Frame = 0

Query: 1  MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTTGTPLNMVSPQSNEPIYNN 60
          MASQD+GRPLPKFGEWDVNNPASAEGFTVIFNKARNEKK TTG   NMV  + NEP++NN
Sbjct: 1  MASQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKK-TTGNAANMVPKERNEPVFNN 60

Query: 61 ESYPHSPPRKKKWFCCG 78
          ESYP  PP KK+WFCCG
Sbjct: 61 ESYPQYPPPKKRWFCCG 76

BLAST of Sed0025558 vs. ExPASy TrEMBL
Match: A0A0A0LRE5 (AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G050070 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.5e-28
Identity = 62/77 (80.52%), Postives = 67/77 (87.01%), Query Frame = 0

Query: 1   MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTTGTPLNMVSPQSNEPIYNN 60
           MASQDKGR LPKFG+WDVNNPASAEGFTVIFNKARNEKK TTGT  NMV  + NEP++NN
Sbjct: 59  MASQDKGRALPKFGDWDVNNPASAEGFTVIFNKARNEKK-TTGTAANMVPQERNEPVFNN 118

Query: 61  ESYPHSPPRKKKWFCCG 78
           ESYP  PP KK+WFCCG
Sbjct: 119 ESYPQYPPPKKRWFCCG 134

BLAST of Sed0025558 vs. ExPASy TrEMBL
Match: A0A1S3AYE6 (RPM1-interacting protein 4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484092 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 8.4e-27
Identity = 58/75 (77.33%), Postives = 64/75 (85.33%), Query Frame = 0

Query: 3  SQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTTGTPLNMVSPQSNEPIYNNES 62
          + D+GRPLPKFGEWDVNNPASAEGFTVIFNKARNEKK TTG   NMV  + NEP++NNES
Sbjct: 2  ASDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKK-TTGNAANMVPKERNEPVFNNES 61

Query: 63 YPHSPPRKKKWFCCG 78
          YP  PP KK+WFCCG
Sbjct: 62 YPQYPPPKKRWFCCG 75

BLAST of Sed0025558 vs. TAIR 10
Match: AT5G63270.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 90.1 bits (222), Expect = 8.3e-19
Identity = 45/77 (58.44%), Postives = 56/77 (72.73%), Query Frame = 0

Query: 3  SQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTTGT---PLNMVSPQSNE-PIY 62
          +++KG+PLPKFGEWDVNNPASAEGFTVIF+KA +EKKT   +   P ++VSPQ N+    
Sbjct: 2  AENKGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASGAGPNSLVSPQRNQNSDQ 61

Query: 63 NNESYPHSPPRKKKWFC 76
          NN     +P  K KWFC
Sbjct: 62 NNNHSSQNPKAKNKWFC 78

BLAST of Sed0025558 vs. TAIR 10
Match: AT2G04410.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 87.8 bits (216), Expect = 4.1e-18
Identity = 46/72 (63.89%), Postives = 50/72 (69.44%), Query Frame = 0

Query: 5  DKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTTGTPLNMVSPQSNEPIYNNESYP 64
          DKGRPLPKFGEWDVN+P+SAEGFTVIFNKARNEKK    +     SP  +EP YN     
Sbjct: 3  DKGRPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGGKSD----SPGKDEPGYNKNGEV 62

Query: 65 HSPPRKKKWFCC 77
             P  KKWFCC
Sbjct: 63 LEKP-AKKWFCC 69

BLAST of Sed0025558 vs. TAIR 10
Match: AT3G48450.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 85.5 bits (210), Expect = 2.0e-17
Identity = 46/87 (52.87%), Postives = 56/87 (64.37%), Query Frame = 0

Query: 1  MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEK---KTTTGTPLNMVSPQSN-EP 60
          MA+ ++ RPLPKFGEWD  NP SAEGFTVIFNKAR++K   KT    P ++VSP  N EP
Sbjct: 1  MATGNRARPLPKFGEWDATNPGSAEGFTVIFNKARDDKKTMKTAVAGPESIVSPPRNEEP 60

Query: 61 IYNNESYPH--------SPPRKKKWFC 76
            NN ++ H        +P  KKKW C
Sbjct: 61 PKNNNNHHHNHHTRHSQTPRSKKKWLC 87

BLAST of Sed0025558 vs. TAIR 10
Match: AT5G55850.3 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 85.5 bits (210), Expect = 2.0e-17
Identity = 45/75 (60.00%), Postives = 53/75 (70.67%), Query Frame = 0

Query: 4  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKT--TTGTPLNMVSPQSNEPIYNNE 63
          +DKGRPLPKFGEWDVN+PASAEGFTVIFNKAR+EKKT    G+P      +S+E    + 
Sbjct: 18 RDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSP-----GKSSEGHVKSG 77

Query: 64 SYPHSPPRKKKWFCC 77
              S P+ KKW CC
Sbjct: 78 GGDPSKPQPKKWLCC 87

BLAST of Sed0025558 vs. TAIR 10
Match: AT5G55850.2 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 76.6 bits (187), Expect = 9.5e-15
Identity = 34/37 (91.89%), Postives = 37/37 (100.00%), Query Frame = 0

Query: 4  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKT 41
          +DKGRPLPKFGEWDVN+PASAEGFTVIFNKAR+EKKT
Sbjct: 18 RDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKT 54

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022954832.11.7e-2984.42RPM1-interacting protein 4-like [Cucurbita moschata] >XP_023542808.1 RPM1-intera... [more]
XP_022994173.11.4e-2883.12RPM1-interacting protein 4-like [Cucurbita maxima][more]
XP_008439256.11.4e-2880.52PREDICTED: RPM1-interacting protein 4 isoform X1 [Cucumis melo][more]
XP_038894676.11.8e-2881.82protein NOI4 isoform X1 [Benincasa hispida][more]
XP_004152507.23.1e-2880.52protein NOI4 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
O226333.7e-1660.81Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1[more]
Q8GYN53.5e-0640.63RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1GRZ48.1e-3084.42RPM1-interacting protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111456977 PE... [more]
A0A6J1K4F56.8e-2983.12RPM1-interacting protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111489992 PE=4... [more]
A0A1S3AZ046.8e-2980.52RPM1-interacting protein 4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484092 PE... [more]
A0A0A0LRE51.5e-2880.52AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G05... [more]
A0A1S3AYE68.4e-2777.33RPM1-interacting protein 4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484092 PE... [more]
Match NameE-valueIdentityDescription
AT5G63270.18.3e-1958.44RPM1-interacting protein 4 (RIN4) family protein [more]
AT2G04410.14.1e-1863.89RPM1-interacting protein 4 (RIN4) family protein [more]
AT3G48450.12.0e-1752.87RPM1-interacting protein 4 (RIN4) family protein [more]
AT5G55850.32.0e-1760.00RPM1-interacting protein 4 (RIN4) family protein [more]
AT5G55850.29.5e-1591.89RPM1-interacting protein 4 (RIN4) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008700RIN4, pathogenic type III effector avirulence factor Avr cleavage sitePFAMPF05627AvrRpt-cleavagecoord: 5..40
e-value: 7.4E-24
score: 82.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..61
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..77
NoneNo IPR availablePANTHERPTHR33159:SF53SUBFAMILY NOT NAMEDcoord: 3..77
IPR040387RPM1-interacting protein 4/NOI4PANTHERPTHR33159RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEINcoord: 3..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0025558.1Sed0025558.1mRNA