Sed0025538 (gene) Chayote v1

Overview


Name	Sed0025538
Type	gene
Organism	Sechium edule (Chayote v1)
Description	histone H2B-like
Location	LG03: 12446141 .. 12447660 (+)
RNA-Seq Expression	Sed0025538
Synteny	Sed0025538

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCAAGACGATCCCGCAGAATAGTGGTGGGTTCTGTGGTCCGGACCACCAGTGAAAGTGGATGTGGTGGAGCGAGAGAGCCAGGAACTGACTCGAGAACCCGAAACCACGACGGAAACTGCAGCCGGGGAAGTGTTCCGGAGGACTCTTCCGGTGGAAGAGAAGACTCCGCCACCGGAACAGCCCCTAACTATGCCGGTGTCGGAAGATTATTCCGAACCGGCTAAGCCTGCAGTTTCCACCTCACAGGTCACTCAAGATGACGACGATGCCACTCCCAACATGGAACCTAAGACCAAGAATGGTAACAATATGAATAAAAAAGACTTTATATCCATTTTGGGATTTTTTATCAAATTATATATTTTTTTTTACAATACATTAAACAAACTTATAATTTTGTGGTCCGTATAGTAATCAATTAATTTTTAATTGTTGATTTTTTTTTTAAATTTAAGCCGTTGATAATCATTAAAATTTTTGCTTAAGCTTAGTTTTACTTAAAATCTTTATTGGAGTTTTCGTTATTTGAATATGTAATGGCCCAACCCTTGTCTGCTTTGGGCCGGGCTCTCGGATTTAATTCTTTATCTAGGAAAATGCATTCTGCTAGAAGAAGGTGTCCAAAGGAGTGTTTCGTTTTTCTTCTCAACCCACGTGGGATTTCCTTATGGGTTTCCACTCCATCGCTAGTCAAGATATTGTCCGTGAGCTAGTGGGCCAAAGCAGACAATATTTTGACTAGCGATGGTCAAACTGTTACAGAATACTAACTAAGTTTCAAAATCATTTTTCTTAATAGTATTTGAATACTAACTAAATTTCAAAAGCTTTTTTTTTCTAAAAAAAAAATTTAGTTTAAATTTTAGAAACATAGATATTGAAGCAAAAAACGAAAAAAACTAATGAAGTGTAACCCGAGAAAAGTAACCGTGGAATTGAAATGATTAACTCCAATCATGATAACCAACGTGCTATTGACCCATTCGGTGCACACAGATCTCGTTTGATGTATTATAATACCCACTTTCAGGTAGGGAAAGTGGATCAAGGAGATCAAAGAAGAGAAGTAGAAGGAAAAGTGGGGGTGAATTAGGGTACAAGAGGTACGTGCACAAGGTTCTAAAACAGGTGCATCCCGAGATGGGGATAGCGGGACGGGCGATGCTGATTTTGAACAATTTGATGGACGACATGTTCGGAAGGCTAGCACAAGAAGCAACTAAGCTCTCTAAATACTCAGGTTACTTATACATTCAAACTTAATATGAATGATCTAATATTATTACCTCTAACTATGAACATATCTACTCAATAGCCCTAAACATGTCGTATTTTTTTTTTCCATATTATATAATTGAACCTAATTTTGTTAATGTATAGGTGGAATGACGCTGTCAGCAAGGGAAATACAGGGGGCGGTGAGGCTAGTTTTGCCGGGGAGTTGGGGAAGCACGCCATTGCCGAGGGAACTAAAGCTGTCTCTAATTACGTCTCTTATCATAATCAACCTTAA

mRNA sequence

ATGGCGCCAAGACGATCCCGCAGAATAGTGGTGGGTTCTGTGCGAGAGAGCCAGGAACTGACTCGAGAACCCGAAACCACGACGGAAACTGCAGCCGGGGAAGTGTTCCGGAGGACTCTTCCGGTGGAAGAGAAGACTCCGCCACCGGAACAGCCCCTAACTATGCCGGTGTCGGAAGATTATTCCGAACCGGCTAAGCCTGCAGTTTCCACCTCACAGGTCACTCAAGATGACGACGATGCCACTCCCAACATGGAACCTAAGACCAAGAATGGTAGGGAAAGTGGATCAAGGAGATCAAAGAAGAGAAGTAGAAGGAAAAGTGGGGGTGAATTAGGGTACAAGAGGTACGTGCACAAGGTTCTAAAACAGGTGCATCCCGAGATGGGGATAGCGGGACGGGCGATGCTGATTTTGAACAATTTGATGGACGACATGTTCGGAAGGCTAGCACAAGAAGCAACTAAGCTCTCTAAATACTCAGGGGGCGGTGAGGCTAGTTTTGCCGGGGAGTTGGGGAAGCACGCCATTGCCGAGGGAACTAAAGCTGTCTCTAATTACGTCTCTTATCATAATCAACCTTAA

Coding sequence (CDS)

ATGGCGCCAAGACGATCCCGCAGAATAGTGGTGGGTTCTGTGCGAGAGAGCCAGGAACTGACTCGAGAACCCGAAACCACGACGGAAACTGCAGCCGGGGAAGTGTTCCGGAGGACTCTTCCGGTGGAAGAGAAGACTCCGCCACCGGAACAGCCCCTAACTATGCCGGTGTCGGAAGATTATTCCGAACCGGCTAAGCCTGCAGTTTCCACCTCACAGGTCACTCAAGATGACGACGATGCCACTCCCAACATGGAACCTAAGACCAAGAATGGTAGGGAAAGTGGATCAAGGAGATCAAAGAAGAGAAGTAGAAGGAAAAGTGGGGGTGAATTAGGGTACAAGAGGTACGTGCACAAGGTTCTAAAACAGGTGCATCCCGAGATGGGGATAGCGGGACGGGCGATGCTGATTTTGAACAATTTGATGGACGACATGTTCGGAAGGCTAGCACAAGAAGCAACTAAGCTCTCTAAATACTCAGGGGGCGGTGAGGCTAGTTTTGCCGGGGAGTTGGGGAAGCACGCCATTGCCGAGGGAACTAAAGCTGTCTCTAATTACGTCTCTTATCATAATCAACCTTAA

Protein sequence

MAPRRSRRIVVGSVRESQELTREPETTTETAAGEVFRRTLPVEEKTPPPEQPLTMPVSEDYSEPAKPAVSTSQVTQDDDDATPNMEPKTKNGRESGSRRSKKRSRRKSGGELGYKRYVHKVLKQVHPEMGIAGRAMLILNNLMDDMFGRLAQEATKLSKYSGGGEASFAGELGKHAIAEGTKAVSNYVSYHNQP

Homology

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BLAST of Sed0025538 vs. NCBI nr
Match: XP_038894659.1 (LOW QUALITY PROTEIN: histone H2B-like [Benincasa hispida])

HSP 1 Score: 192.2 bits (487), Expect = 4.2e-45
Identity = 130/229 (56.77%), Postives = 152/229 (66.38%), Query Frame = 0


Query: 1   MAPRRSRRIVVGSV------------------RESQELTREPET--TTETAAGEVFRRTL 60
           M PRRSRR VVGSV                  +ESQ+LT+EPET  T E   G+VFRRT+
Sbjct: 1   MPPRRSRR-VVGSVVRTTTRMVEETVQVAVLEKESQDLTQEPETTQTAEGRGGDVFRRTI 60

Query: 61  PVEEKTPPPEQPLTMPVSEDYSEPAKPAVSTSQVTQDDDDATPNMEPKTKNGRESGSRRS 120
           PVEEK PP EQP T PVSED+ +  KP  STSQ+T +D  ATP +EP+ +NG++   R+ 
Sbjct: 61  PVEEKAPPREQPKTFPVSEDF-DTRKPTDSTSQLT-EDTAATPEVEPEVRNGKKGRKRKK 120

Query: 121 K-----KRSRRKS---GGELGYKRYVHKVLKQVHPEMGIAGRAMLILNNLMDDMFGRLAQ 180
           K     KR R+ S   GG  GYKRYV KVLKQVHPE+GI+G+AM+ILNN M+DMF RLA 
Sbjct: 121 KMEKEGKRRRKSSGGGGGREGYKRYVFKVLKQVHPEIGISGKAMVILNNFMNDMFQRLAD 180

Query: 181 EATKLSKYSGGGEAS-----------FAGELGKHAIAEGTKAVSNYVSY 191
           EATKLSKY+GG   S             GELGKHAIAEGTKAVS YVSY
Sbjct: 181 EATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSAYVSY 226

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BLAST of Sed0025538 vs. NCBI nr
Match: XP_008462313.1 (PREDICTED: histone H2B type 1-A-like [Cucumis melo])

HSP 1 Score: 181.8 bits (460), Expect = 5.7e-42
Identity = 129/237 (54.43%), Postives = 155/237 (65.40%), Query Frame = 0


Query: 1   MAPRRSRRIVVGSV------------------RESQELTREPETT-TETAAGEVFRRTLP 60
           M PRRSRR VVGSV                  +ESQ+LT+EP+T  T    GE+FRR +P
Sbjct: 1   MPPRRSRR-VVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETADGGGEMFRRPVP 60

Query: 61  VEE-KTP-PPEQPLTMPVSEDYSEPAKPAVSTSQVTQDDDDATPNMEPKTKNGRESGSRR 120
           VEE K+P PPEQP+T PVSE++ E  +   STSQ+T +D   TP MEP+ + G++ G R+
Sbjct: 61  VEEIKSPDPPEQPITHPVSENF-EVRRATDSTSQLT-EDTAVTPEMEPEVQKGKKGGRRK 120

Query: 121 SKK-----------RSRRKSG-GELGYKRYVHKVLKQVHPEMGIAGRAMLILNNLMDDMF 180
            KK           RS+  SG G  GYKRYV KVLKQVHPE+GI+G+AMLILNN M+DMF
Sbjct: 121 KKKEKKREIKEGKRRSKNSSGSGREGYKRYVFKVLKQVHPEIGISGQAMLILNNFMNDMF 180

Query: 181 GRLAQEATKLSKYSGGGEAS-----------FAGELGKHAIAEGTKAVSNYVSYHNQ 194
            RLA+EATKLSKY+GG   S             GELGKHAIAEGTKAVSNYVSY N+
Sbjct: 181 QRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNR 234

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BLAST of Sed0025538 vs. NCBI nr
Match: XP_031736247.1 (histone H2B [Cucumis sativus] >KGN64870.1 hypothetical protein Csa_022747 [Cucumis sativus])

HSP 1 Score: 179.9 bits (455), Expect = 2.1e-41
Identity = 123/237 (51.90%), Postives = 150/237 (63.29%), Query Frame = 0


Query: 1   MAPRRSRRIVVGSV------------------RESQELTREPE-TTTETAAGEVFRRTLP 60
           M PRRSRR VVGSV                  +ESQ+LT+EP+   T    GE+FRRT+P
Sbjct: 1   MPPRRSRR-VVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVP 60

Query: 61  VEEKTPPPEQPLTMPVSEDYSEPAKPAVSTSQVTQDDDDATPNMEPKTKNGRESGSRRSK 120
           VEE    P+QP++ PVSED+ E  +   STSQ+T +D   TP MEPK + G++   RR K
Sbjct: 61  VEEIKAHPQQPISHPVSEDF-ELRRATDSTSQLT-EDTAVTPEMEPKIRKGKKGRRRRKK 120

Query: 121 KRSRRK--------------SGGELGYKRYVHKVLKQVHPEMGIAGRAMLILNNLMDDMF 180
           K+ +++               GG  GYKRYV KVLKQVHPE+GI+G+AMLILNN M+DMF
Sbjct: 121 KKEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMF 180

Query: 181 GRLAQEATKLSKYSGGGEAS-----------FAGELGKHAIAEGTKAVSNYVSYHNQ 194
            RLA+EATKLSKY+GG   S             GELGKHAIAEGTKAVSNYVSY N+
Sbjct: 181 QRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNR 234

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BLAST of Sed0025538 vs. NCBI nr
Match: XP_022937552.1 (histone H2B.6-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 164.9 bits (416), Expect = 7.1e-37
Identity = 118/227 (51.98%), Postives = 141/227 (62.11%), Query Frame = 0


Query: 1   MAPRRSRRIVVGSVR-----------------ESQELTREPETTTETAAGEVFRRTLPVE 60
           M PRRSRRIV   VR                 ESQ++T+EP  T ET    VFRRT+PVE
Sbjct: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEP-ATAETGGDGVFRRTIPVE 60

Query: 61  EKTPPPEQPLTMPVSEDYSEPAKPAVSTSQVTQDDDDATPNMEPKTKNG-RESGSRRSKK 120
           +       P T PV  D  +  +P  STS+VT +D D T  ME K ++G RES  +  KK
Sbjct: 61  D-------PQTSPVWGDV-KLTRPVDSTSEVT-EDKDVTGKMESKARDGVRESRKKNEKK 120

Query: 121 -----RSRRKSGGELGYKRYVHKVLKQVHPEMGIAGRAMLILNNLMDDMFGRLAQEATKL 180
                + RR  GG  GYKRYV KVLKQVHPE+GI+G+AM+ILNNLM+DMF RLA+EATKL
Sbjct: 121 KEREVKKRRSGGGREGYKRYVFKVLKQVHPEVGISGQAMVILNNLMNDMFERLAEEATKL 180

Query: 181 SKYSGGGEAS-----------FAGELGKHAIAEGTKAVSNYVSYHNQ 194
           SKY+GG   S           F GELGKHA+AEGTKAVS YVSY ++
Sbjct: 181 SKYTGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHR 217

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BLAST of Sed0025538 vs. NCBI nr
Match: XP_023537504.1 (histone H2B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 164.5 bits (415), Expect = 9.3e-37
Identity = 117/227 (51.54%), Postives = 141/227 (62.11%), Query Frame = 0


Query: 1   MAPRRSRRIVVGSVR-----------------ESQELTREPETTTETAAGEVFRRTLPVE 60
           M PRRSRRIV   VR                 ESQ++T+EP  T ET    VFRR +PVE
Sbjct: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEP-ATAETGGDGVFRRNIPVE 60

Query: 61  EKTPPPEQPLTMPVSEDYSEPAKPAVSTSQVTQDDDDATPNMEPKTKNG-RESGSRRSKK 120
           +       P T PV  D  +  +P  STS+VT +D D T  ME K +NG RES  +  KK
Sbjct: 61  D-------PQTSPVWGDV-KLTRPVDSTSEVT-EDKDVTGKMESKARNGIRESRKKHEKK 120

Query: 121 -----RSRRKSGGELGYKRYVHKVLKQVHPEMGIAGRAMLILNNLMDDMFGRLAQEATKL 180
                + RR+ GG  GYKRYV +VLKQVHPE+GI+G+AM+ILNNLM+DMF RLA+EATKL
Sbjct: 121 KEREVKKRRRGGGREGYKRYVFRVLKQVHPEVGISGQAMVILNNLMNDMFERLAEEATKL 180

Query: 181 SKYSGGGEAS-----------FAGELGKHAIAEGTKAVSNYVSYHNQ 194
           SKY+GG   S           F GELGKHA+AEGTKAVS YVSY ++
Sbjct: 181 SKYTGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHR 217

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BLAST of Sed0025538 vs. ExPASy Swiss-Prot
Match: A0A2R8Y619 (Histone H2B type 2-E1 OS=Homo sapiens OX=9606 GN=H2BE1 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-17
Identity = 52/115 (45.22%), Postives = 76/115 (66.09%), Query Frame = 0


Query: 86  EPKTKNGRESGSRRSKKRSRRKSGGELGYKRYVHKVLKQVHPEMGIAGRAMLILNNLMDD 145
           +P  + GR SG+++SKKR RRK      Y  Y++KVLKQVHP++GI+ +AM I+N+ ++D
Sbjct: 10  QPGGRGGRSSGNKKSKKRCRRKE----SYSMYIYKVLKQVHPDIGISAKAMSIMNSFVND 69

Query: 146 MFGRLAQEATKLSKYSGGGEAS-----------FAGELGKHAIAEGTKAVSNYVS 190
           +F +LA EA +L++YSG    +             GEL KHA++EGTKAV+ Y S
Sbjct: 70  VFEQLACEAARLAQYSGRTTLTSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTS 120

[Close]

BLAST of Sed0025538 vs. ExPASy Swiss-Prot
Match: Q9SGE3 (Histone H2B.2 OS=Arabidopsis thaliana OX=3702 GN=At1g08170 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.1e-15
Identity = 74/243 (30.45%), Postives = 120/243 (49.38%), Query Frame = 0


Query: 1   MAPR--------RSRRIVVGSVRESQELTREPETTTETAAGEVFRR---TLPVEEKTPPP 60
           MAPR        + +++V  +++ +     +P   TETA  +  +    ++PV E     
Sbjct: 1   MAPRKPKVVSVTKKKKVVEETIKVTVTEEGDPCVITETANDQETQDLTFSIPVGENVTTV 60

Query: 61  EQPLTMPVSEDYSEPAKPAVSTSQVTQDDDDATPNMEPKT-------------------- 120
           E P+ +P  ++ S P    V+T ++  DD D +    P+T                    
Sbjct: 61  EIPVEVP--DERSLPVGENVTTVKIPVDDRDESSPQPPETPVEVRDEPSPQPPETPASKS 120

Query: 121 -----KNGRESGSRRSKKRSRRKSGGELG---YKRYVHKVLKQVHPEMGIAGRAMLILNN 180
                K  +    + +KK+ ++K   +L    Y+RYV+KV+KQVHP++GI  +AM ++N 
Sbjct: 121 EGTLKKTDKVEKKQENKKKKKKKKRDDLAGDEYRRYVYKVMKQVHPDLGITSKAMTVVNM 180

Query: 181 LMDDMFGRLAQEATKLSKYSGGGEAS-----------FAGELGKHAIAEGTKAVSNYVSY 194
            M DMF R+AQEA +LS Y+     S             GEL +HA+AEG+KAVSN+V Y
Sbjct: 181 FMGDMFERIAQEAARLSDYTKRRTLSSREIEAAVRLVLPGELSRHAVAEGSKAVSNFVGY 240

[Close]

BLAST of Sed0025538 vs. ExPASy Swiss-Prot
Match: P07795 (Late histone H2B.2.2 OS=Psammechinus miliaris OX=7660 PE=3 SV=2)

HSP 1 Score: 81.3 bits (199), Expect = 1.4e-14
Identity = 46/109 (42.20%), Postives = 72/109 (66.06%), Query Frame = 0


Query: 92  GRESGSRRSKKRSRRKSGGELGYKRYVHKVLKQVHPEMGIAGRAMLILNNLMDDMFGRLA 151
           GR SG+ ++++R R++S     Y  Y++KVLKQVHP+ GI+ +AM I+N+ ++D+F R+A
Sbjct: 19  GRPSGASKTRRRKRKES-----YGIYIYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIA 78

Query: 152 QEATKLSKYSGGGEAS-----------FAGELGKHAIAEGTKAVSNYVS 190
            EA++LS+Y+     S             GEL KHA++EGTKAV+ Y +
Sbjct: 79  GEASRLSQYNKKSTISSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTT 122

[Close]

BLAST of Sed0025538 vs. ExPASy Swiss-Prot
Match: Q4HTT2 (Histone H2B OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=HTB1 PE=3 SV=3)

HSP 1 Score: 80.5 bits (197), Expect = 2.3e-14
Identity = 51/120 (42.50%), Postives = 72/120 (60.00%), Query Frame = 0


Query: 81  ATPNMEPKTKNGRESGSRRSKKRSRRKSGGELGYKRYVHKVLKQVHPEMGIAGRAMLILN 140
           AT +  P+ K+  +  +    K+ R KS  E  Y  Y++KVLKQVHP+ GI+ RAM ILN
Sbjct: 16  ATASKAPEKKDAGKKTAASGDKKKRSKSRKET-YSSYIYKVLKQVHPDTGISNRAMSILN 75

Query: 141 NLMDDMFGRLAQEATKLSKYSGGGEAS-----------FAGELGKHAIAEGTKAVSNYVS 190
           + ++D+F R+A EA+KL+ Y+     S             GEL KHA++EGTKAV+ Y S
Sbjct: 76  SFVNDIFERVASEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSS 134

[Close]

BLAST of Sed0025538 vs. ExPASy Swiss-Prot
Match: Q9LFF6 (Histone H2B.8 OS=Arabidopsis thaliana OX=3702 GN=At3g53650 PE=1 SV=3)

HSP 1 Score: 79.3 bits (194), Expect = 5.2e-14
Identity = 45/108 (41.67%), Postives = 72/108 (66.67%), Query Frame = 0


Query: 93  RESGSRRSKKRSRRKSGGELGYKRYVHKVLKQVHPEMGIAGRAMLILNNLMDDMFGRLAQ 152
           +E GS + KK+S++       YK Y+ KVLKQVHP++GI+G+AM I+N+ ++D+F +LAQ
Sbjct: 33  KEGGSEKKKKKSKKNIE---TYKIYIFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQ 92

Query: 153 EATKLSKYSGGGEAS-----------FAGELGKHAIAEGTKAVSNYVS 190
           E+++L++Y+     +             GEL KHA++EGTKAV+ + S
Sbjct: 93  ESSRLARYNKKPTITSREIQTAVRLVLPGELSKHAVSEGTKAVTKFTS 137

[Close]

BLAST of Sed0025538 vs. ExPASy TrEMBL
Match: A0A1S3CH74 (histone H2B type 1-A-like OS=Cucumis melo OX=3656 GN=LOC103500693 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.7e-42
Identity = 129/237 (54.43%), Postives = 155/237 (65.40%), Query Frame = 0


Query: 1   MAPRRSRRIVVGSV------------------RESQELTREPETT-TETAAGEVFRRTLP 60
           M PRRSRR VVGSV                  +ESQ+LT+EP+T  T    GE+FRR +P
Sbjct: 1   MPPRRSRR-VVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETADGGGEMFRRPVP 60

Query: 61  VEE-KTP-PPEQPLTMPVSEDYSEPAKPAVSTSQVTQDDDDATPNMEPKTKNGRESGSRR 120
           VEE K+P PPEQP+T PVSE++ E  +   STSQ+T +D   TP MEP+ + G++ G R+
Sbjct: 61  VEEIKSPDPPEQPITHPVSENF-EVRRATDSTSQLT-EDTAVTPEMEPEVQKGKKGGRRK 120

Query: 121 SKK-----------RSRRKSG-GELGYKRYVHKVLKQVHPEMGIAGRAMLILNNLMDDMF 180
            KK           RS+  SG G  GYKRYV KVLKQVHPE+GI+G+AMLILNN M+DMF
Sbjct: 121 KKKEKKREIKEGKRRSKNSSGSGREGYKRYVFKVLKQVHPEIGISGQAMLILNNFMNDMF 180

Query: 181 GRLAQEATKLSKYSGGGEAS-----------FAGELGKHAIAEGTKAVSNYVSYHNQ 194
            RLA+EATKLSKY+GG   S             GELGKHAIAEGTKAVSNYVSY N+
Sbjct: 181 QRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNR 234

[Close]

BLAST of Sed0025538 vs. ExPASy TrEMBL
Match: A0A0A0LSH9 (Histone domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G136770 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.0e-41
Identity = 123/237 (51.90%), Postives = 150/237 (63.29%), Query Frame = 0


Query: 1   MAPRRSRRIVVGSV------------------RESQELTREPE-TTTETAAGEVFRRTLP 60
           M PRRSRR VVGSV                  +ESQ+LT+EP+   T    GE+FRRT+P
Sbjct: 1   MPPRRSRR-VVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVP 60

Query: 61  VEEKTPPPEQPLTMPVSEDYSEPAKPAVSTSQVTQDDDDATPNMEPKTKNGRESGSRRSK 120
           VEE    P+QP++ PVSED+ E  +   STSQ+T +D   TP MEPK + G++   RR K
Sbjct: 61  VEEIKAHPQQPISHPVSEDF-ELRRATDSTSQLT-EDTAVTPEMEPKIRKGKKGRRRRKK 120

Query: 121 KRSRRK--------------SGGELGYKRYVHKVLKQVHPEMGIAGRAMLILNNLMDDMF 180
           K+ +++               GG  GYKRYV KVLKQVHPE+GI+G+AMLILNN M+DMF
Sbjct: 121 KKEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMF 180

Query: 181 GRLAQEATKLSKYSGGGEAS-----------FAGELGKHAIAEGTKAVSNYVSYHNQ 194
            RLA+EATKLSKY+GG   S             GELGKHAIAEGTKAVSNYVSY N+
Sbjct: 181 QRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNR 234

[Close]

BLAST of Sed0025538 vs. ExPASy TrEMBL
Match: A0A6J1FBI7 (histone H2B.6-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443927 PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 3.5e-37
Identity = 118/227 (51.98%), Postives = 141/227 (62.11%), Query Frame = 0


Query: 1   MAPRRSRRIVVGSVR-----------------ESQELTREPETTTETAAGEVFRRTLPVE 60
           M PRRSRRIV   VR                 ESQ++T+EP  T ET    VFRRT+PVE
Sbjct: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEP-ATAETGGDGVFRRTIPVE 60

Query: 61  EKTPPPEQPLTMPVSEDYSEPAKPAVSTSQVTQDDDDATPNMEPKTKNG-RESGSRRSKK 120
           +       P T PV  D  +  +P  STS+VT +D D T  ME K ++G RES  +  KK
Sbjct: 61  D-------PQTSPVWGDV-KLTRPVDSTSEVT-EDKDVTGKMESKARDGVRESRKKNEKK 120

Query: 121 -----RSRRKSGGELGYKRYVHKVLKQVHPEMGIAGRAMLILNNLMDDMFGRLAQEATKL 180
                + RR  GG  GYKRYV KVLKQVHPE+GI+G+AM+ILNNLM+DMF RLA+EATKL
Sbjct: 121 KEREVKKRRSGGGREGYKRYVFKVLKQVHPEVGISGQAMVILNNLMNDMFERLAEEATKL 180

Query: 181 SKYSGGGEAS-----------FAGELGKHAIAEGTKAVSNYVSYHNQ 194
           SKY+GG   S           F GELGKHA+AEGTKAVS YVSY ++
Sbjct: 181 SKYTGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHR 217

[Close]

BLAST of Sed0025538 vs. ExPASy TrEMBL
Match: A0A5A7UF12 (Histone H2B type 1-A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold578G00860 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 2.5e-35
Identity = 116/225 (51.56%), Postives = 137/225 (60.89%), Query Frame = 0


Query: 1   MAPRRSRRIVVGSV------------------RESQELTREPETT-TETAAGEVFRRTLP 60
           M PRRSRR VVGSV                  +ESQ+LT+EP+T  T    GE+FRR +P
Sbjct: 1   MPPRRSRR-VVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETADGGGEMFRRPVP 60

Query: 61  VEE-KTP-PPEQPLTMPVSEDYSEPAKPAVSTSQVTQDDDDATPNMEPKTKNGRESGSRR 120
           VEE K+P PPEQP+T PVSE++ E  +   STSQ+T +D   TP MEP            
Sbjct: 61  VEEIKSPDPPEQPITHPVSENF-EVRRATDSTSQLT-EDTAVTPEMEP------------ 120

Query: 121 SKKRSRRKSGGELGYKRYVHKVLKQVHPEMGIAGRAMLILNNLMDDMFGRLAQEATKLSK 180
                          +RYV KVLKQVHPE+GI+G+AMLILNN M+DMF RLA+EATKLSK
Sbjct: 121 ---------------ERYVFKVLKQVHPEIGISGQAMLILNNFMNDMFQRLAEEATKLSK 180

Query: 181 YSGGGEAS-----------FAGELGKHAIAEGTKAVSNYVSYHNQ 194
           Y+GG   S             GELGKHAIAEGTKAVSNYVSY N+
Sbjct: 181 YTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNR 195

[Close]

BLAST of Sed0025538 vs. ExPASy TrEMBL
Match: A0A6J1I190 (histone H2B, gonadal-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468518 PE=3 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 3.2e-35
Identity = 114/227 (50.22%), Postives = 138/227 (60.79%), Query Frame = 0


Query: 1   MAPRRSRRIVVGSVR-----------------ESQELTREPETTTETAAGEVFRRTLPVE 60
           M PRRSRRIV   VR                 ESQ+LT+EP  T ET   EVFRRT+ VE
Sbjct: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDLTQEP-ATAETGGDEVFRRTIQVE 60

Query: 61  EKTPPPEQPLTMPVSEDYSEPAKPAVSTSQVTQDDDDATPNMEPKTKNGRESGSRRSKK- 120
           +       P T  V  D  +  +P  STS+VT +D D T  ME K +NG     ++++K 
Sbjct: 61  D-------PRTSTVWGDV-KLTRPVDSTSEVT-EDKDVTGKMESKPRNGVRGSRKKNEKK 120

Query: 121 -----RSRRKSGGELGYKRYVHKVLKQVHPEMGIAGRAMLILNNLMDDMFGRLAQEATKL 180
                + RR   G  GYKRYV KVLKQVHPE+GI+G+AM+ILNNLM+DMF RLA+EATKL
Sbjct: 121 KEREVKKRRSREGREGYKRYVFKVLKQVHPEVGISGQAMVILNNLMNDMFERLAEEATKL 180

Query: 181 SKYSGGGEAS-----------FAGELGKHAIAEGTKAVSNYVSYHNQ 194
           SKY+GG   S           F GELGKHA+AEGTKAVS YVSY ++
Sbjct: 181 SKYTGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHR 217

[Close]

BLAST of Sed0025538 vs. TAIR 10
Match: AT1G08170.1 (Histone superfamily protein )

HSP 1 Score: 84.0 bits (206), Expect = 1.5e-16
Identity = 74/243 (30.45%), Postives = 120/243 (49.38%), Query Frame = 0


Query: 1   MAPR--------RSRRIVVGSVRESQELTREPETTTETAAGEVFRR---TLPVEEKTPPP 60
           MAPR        + +++V  +++ +     +P   TETA  +  +    ++PV E     
Sbjct: 1   MAPRKPKVVSVTKKKKVVEETIKVTVTEEGDPCVITETANDQETQDLTFSIPVGENVTTV 60

Query: 61  EQPLTMPVSEDYSEPAKPAVSTSQVTQDDDDATPNMEPKT-------------------- 120
           E P+ +P  ++ S P    V+T ++  DD D +    P+T                    
Sbjct: 61  EIPVEVP--DERSLPVGENVTTVKIPVDDRDESSPQPPETPVEVRDEPSPQPPETPASKS 120

Query: 121 -----KNGRESGSRRSKKRSRRKSGGELG---YKRYVHKVLKQVHPEMGIAGRAMLILNN 180
                K  +    + +KK+ ++K   +L    Y+RYV+KV+KQVHP++GI  +AM ++N 
Sbjct: 121 EGTLKKTDKVEKKQENKKKKKKKKRDDLAGDEYRRYVYKVMKQVHPDLGITSKAMTVVNM 180

Query: 181 LMDDMFGRLAQEATKLSKYSGGGEAS-----------FAGELGKHAIAEGTKAVSNYVSY 194
            M DMF R+AQEA +LS Y+     S             GEL +HA+AEG+KAVSN+V Y
Sbjct: 181 FMGDMFERIAQEAARLSDYTKRRTLSSREIEAAVRLVLPGELSRHAVAEGSKAVSNFVGY 240

[Close]

BLAST of Sed0025538 vs. TAIR 10
Match: AT3G53650.1 (Histone superfamily protein )

HSP 1 Score: 79.3 bits (194), Expect = 3.7e-15
Identity = 45/108 (41.67%), Postives = 72/108 (66.67%), Query Frame = 0


Query: 93  RESGSRRSKKRSRRKSGGELGYKRYVHKVLKQVHPEMGIAGRAMLILNNLMDDMFGRLAQ 152
           +E GS + KK+S++       YK Y+ KVLKQVHP++GI+G+AM I+N+ ++D+F +LAQ
Sbjct: 33  KEGGSEKKKKKSKKNIE---TYKIYIFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQ 92

Query: 153 EATKLSKYSGGGEAS-----------FAGELGKHAIAEGTKAVSNYVS 190
           E+++L++Y+     +             GEL KHA++EGTKAV+ + S
Sbjct: 93  ESSRLARYNKKPTITSREIQTAVRLVLPGELSKHAVSEGTKAVTKFTS 137

[Close]

BLAST of Sed0025538 vs. TAIR 10
Match: AT2G37470.1 (Histone superfamily protein )

HSP 1 Score: 78.2 bits (191), Expect = 8.2e-15
Identity = 46/111 (41.44%), Postives = 72/111 (64.86%), Query Frame = 0


Query: 90  KNGRESGSRRSKKRSRRKSGGELGYKRYVHKVLKQVHPEMGIAGRAMLILNNLMDDMFGR 149
           K  +++G    KK+  +KS     YK Y+ KVLKQVHP++GI+G+AM I+N+ ++D+F +
Sbjct: 30  KISKDAGGSEKKKKKSKKSVET--YKIYIFKVLKQVHPDVGISGKAMGIMNSFINDIFEK 89

Query: 150 LAQEATKLSKYSGGGEAS-----------FAGELGKHAIAEGTKAVSNYVS 190
           LAQE++KL++Y+     +             GEL KHA++EGTKAV+ + S
Sbjct: 90  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 138

[Close]

BLAST of Sed0025538 vs. TAIR 10
Match: AT5G02570.1 (Histone superfamily protein )

HSP 1 Score: 75.9 bits (185), Expect = 4.1e-14
Identity = 44/121 (36.36%), Postives = 74/121 (61.16%), Query Frame = 0


Query: 80  DATPNMEPKTKNGRESGSRRSKKRSRRKSGGELGYKRYVHKVLKQVHPEMGIAGRAMLIL 139
           +  P  + + K  +E G+    K+ ++       YK Y+ KVLKQVHP++GI+G+AM I+
Sbjct: 11  EKAPAPKAEKKIAKEGGTSEIVKKKKKTKKSTETYKIYIFKVLKQVHPDIGISGKAMGIM 70

Query: 140 NNLMDDMFGRLAQEATKLSKYSGGGEAS-----------FAGELGKHAIAEGTKAVSNYV 190
           N+ ++D+F +LAQE+++L++Y+     +             GEL KHA++EGTKAV+ + 
Sbjct: 71  NSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFT 130

[Close]

BLAST of Sed0025538 vs. TAIR 10
Match: AT1G07790.1 (Histone superfamily protein )

HSP 1 Score: 75.1 bits (183), Expect = 6.9e-14
Identity = 48/117 (41.03%), Postives = 74/117 (63.25%), Query Frame = 0


Query: 86  EPKTKNGRESGSRRS--KKRSRRKSGGELGYKRYVHKVLKQVHPEMGIAGRAMLILNNLM 145
           E K K G++   + +  KK+ R K   E  YK Y+ KVLKQVHP++GI+ +AM I+N+ +
Sbjct: 32  EKKPKAGKKLPPKEAGDKKKKRSKKNVET-YKIYIFKVLKQVHPDIGISSKAMGIMNSFI 91

Query: 146 DDMFGRLAQEATKLSKYSGGGEAS-----------FAGELGKHAIAEGTKAVSNYVS 190
           +D+F +LAQE++KL++Y+     +             GEL KHA++EGTKAV+ + S
Sbjct: 92  NDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 147

The following BLAST results are available for this feature:

BLAST of Sed0025538 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038894659.1	4.2e-45	56.77	LOW QUALITY PROTEIN: histone H2B-like [Benincasa hispida]	[more]
XP_008462313.1	5.7e-42	54.43	PREDICTED: histone H2B type 1-A-like [Cucumis melo]	[more]
XP_031736247.1	2.1e-41	51.90	histone H2B [Cucumis sativus] >KGN64870.1 hypothetical protein Csa_022747 [Cucum...	[more]
XP_022937552.1	7.1e-37	51.98	histone H2B.6-like isoform X1 [Cucurbita moschata]	[more]
XP_023537504.1	9.3e-37	51.54	histone H2B-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0025538 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0A2R8Y619	1.3e-17	45.22	Histone H2B type 2-E1 OS=Homo sapiens OX=9606 GN=H2BE1 PE=3 SV=1	[more]
Q9SGE3	2.1e-15	30.45	Histone H2B.2 OS=Arabidopsis thaliana OX=3702 GN=At1g08170 PE=2 SV=1	[more]
P07795	1.4e-14	42.20	Late histone H2B.2.2 OS=Psammechinus miliaris OX=7660 PE=3 SV=2	[more]
Q4HTT2	2.3e-14	42.50	Histone H2B OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / ...	[more]
Q9LFF6	5.2e-14	41.67	Histone H2B.8 OS=Arabidopsis thaliana OX=3702 GN=At3g53650 PE=1 SV=3	[more]

BLAST of Sed0025538 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CH74	2.7e-42	54.43	histone H2B type 1-A-like OS=Cucumis melo OX=3656 GN=LOC103500693 PE=3 SV=1	[more]
A0A0A0LSH9	1.0e-41	51.90	Histone domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G136770 PE=...	[more]
A0A6J1FBI7	3.5e-37	51.98	histone H2B.6-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443927 PE=3...	[more]
A0A5A7UF12	2.5e-35	51.56	Histone H2B type 1-A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A6J1I190	3.2e-35	50.22	histone H2B, gonadal-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468518...	[more]

BLAST of Sed0025538 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08170.1	1.5e-16	30.45	Histone superfamily protein	[more]
AT3G53650.1	3.7e-15	41.67	Histone superfamily protein	[more]
AT2G37470.1	8.2e-15	41.44	Histone superfamily protein	[more]
AT5G02570.1	4.1e-14	36.36	Histone superfamily protein	[more]
AT1G07790.1	6.9e-14	41.03	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 133..153 score: 42.81 coord: 114..132 score: 62.96
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 102..189 e-value: 1.1E-19 score: 81.4
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 34..162 coord: 170..191
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 72..190 e-value: 3.4E-28 score: 100.1
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 87..189
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 63..160 e-value: 6.9E-12 score: 45.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..109
None	No IPR available	PANTHER	PTHR23428:SF238	HISTONE H2B.2	coord: 34..162 coord: 170..191

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0025538.1	Sed0025538.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000786	nucleosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity