Sed0025475 (gene) Chayote v1

Overview


Name	Sed0025475
Type	gene
Organism	Sechium edule (Chayote v1)
Description	ABC transporter A family protein
Location	LG05: 2571741 .. 2574277 (-)
RNA-Seq Expression	Sed0025475
Synteny	Sed0025475

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATTTTGCAATTTACGGGTGGTAGAAAGAACACGGTTCGGGGACAGAAAAGCGAAGCCGAAGAACGAAATGGGTTATGTGCTGAGAGTGAGATTTGCTTCCTTCTTCGCCGGAGCGGCGGTTGCGTCGTGTCTAGGGTTTTATATTCTCCACAAAGATTACAAGATCGCTTATGAATCCATTTCGCATAAGGTATTCTCCGATTCTTCTTCATCGCGTTTTACATGGATTACTTTTTCCTTCGTTCGATTTGTGCGCTTTGTTTCTGATTCTTTACGATTTTAGATTTGATTTTTGTGAATTTTTCGAATTATCGGGCTAGGTGGTGGCTGGAGATACAGATTTATGTTTGATGCTCGTTTAGAAACTCGTTTCTGTGCGGAATCTTGAGGAGAAATTTGAAAATTAGGGGTTTTTGTTGGATAAGAGTCAGGTTCTCATATGGTTAGATTTCATTGGTCGGTGGGTAATTCATGGCTTGTAGTTGTATCCAATGTTGATGGGCTCTGGTCACTACAACATATTTCCATCGGCTTTCGGTTTTTTTATTTTTTATATATATACACCCGTGAGTGTCTGGGTTAGCTTGCATGCATCTCGAACATAATGTCTGACCCTACAACTTATGGACGTCAAGAAAATCCCTAGGAAATGAATTCCTGGTAGTTGACTCGATTGAATCTATGACTTCTTAGTTCCCCAAGACTCTCTTGACCATTAGACTACTCCATGGTGGTTGATTTTGAGCTTCTTGTTGTTAAATAGCTGCGGAAATTTCCTTTCCTGGTTCAATAAGAAAAAAATTGCAAGAGCAAGATGGAGATCAATAGAGAAAAAAGGTTGGATTCTGGGCATCAACTTCTGTAATCTTTTCTACACCCTTCTAAGTGTTGGATTCCAGGCAAACTTCTTAGGAGGTTGTCTCTGAGCAGCCACAGCATGCCATATCTTGCACGTTGCACCTCTTTGACAACCTTCGCTTAGAGAAGACCCTAGGTAATGAGGATTAATGACGACCCTTTAACTCATACAAAGTTCGCATCGGTTTCCAACAAGAAAATGGAAAATAATATTTACATCAACTAGAACAGGTGTGCTATCCTCAAGATTTTGGTTCGAGACTAATCTGTGACATTAATTTGTAGACACCTTCCATGTCTCTATTCCTTTGATGTCTCCCAATGGCCTAGGGACAACATAGTACCTTAAGTATAGTGGAGTGAAGTTTTGATTTTCCGGTCTTCGAAAAAAAGGATGGTTCAAATTGCTTGAATTATTAGCAACTGCGAACTATTCTCTAAGGGGTGGCACAATAGTTGAAGATTTGAGTTTTGAAGGTATGCTCTCTCAAGGTCCCAGGTTTGAAACTCACTTGTGATATTACTTCTTCGATGTCTACTGGAGTGGAGCCTGGCCTAGGAATGGGCATGGTTACCCTTGTTTAAAAAAAAAAAAAATATAGAAACTGCAAACTGTTCCTAACAGATGGATGTGGTAATCCCTTTATCCAATAAGAGTCTACTAAGACTTTTGTACATTCAATTTTAACGAAACATAAAAGTATGTTAATTATTAAACCTTCATTATTTAGATGTATTTTGTAATAAGAAACTTGTGCATTTTATATGCTTGTATTTATAAATAATTTATAGAACTCTACTAGTTGCAACTACTTGTGCATTTTCTATGCTTGTATATATAAATAATTTATAGAACTCTACTAGTGCAACTAAACGGTCTTTTAATTTCAGTAATTTTCAAGTGTAACTTTGCCTCCTCTCTCTCTCTTGTTTGGCTTTTTTTCCTGATGTTCGTCCTTTCTTAAATATTGTTTGCAAAGTCTTATTTGTGGTGTTTTGAAGATGATCAAGGAATATTCTGAAAAAAGGACTTTAATGTCCGACGTGGCATGTTCAAGAGTTCATTGTTTGAAACATAAAAAAGAAATTTGAAGTTCGCCCCATTACATATTTGTAGGCACCTGCACCCGTCCCAAGATTTTAATTTGAGAGACAATAAAAGAATTTACAATTAAGCTCACTTGTTTTGTAATGGTGTTATTTAGATGGAAGGGCTGCATGATTCTCTGGAGAGTAGAATTTCGGCACTCGAAAAGCTGAAGCAGAATGATGATTCTCAACATGTTCAAACATCTGAGTAGACACTGGAGGCCAAGCCAGGATAGGGCCTTGGAATATAAAGAATTTAGGAGGAATAACAACAGCACAAAAACTGGTCTTCTTTGTGTGCTAAACAAGATGTCAAGTTTTTTCTTGGAAAATTTGTTGATTTAGTGTATGAATTCTGATCTTTGTTGTTATCAGATTTAGGTTTGTACTGAACTCCAACTTTACTTAAAGTTGATGTGGCTGAATGATCCATCCCTTCACTTTGGATCATAGCCTTCTTCCTTTGCTCTTTTTCATTTTGTCAATGATGGAAGTTTCATGCAAGACTTGGTAATGAAATTTGTGGGAAGCAGAAAAAAAAAAAAATAGCTCCTTAAAGTTCCAGTCATTGTGAATTTTAGAAAGTTT

mRNA sequence

TAATTTTGCAATTTACGGGTGGTAGAAAGAACACGGTTCGGGGACAGAAAAGCGAAGCCGAAGAACGAAATGGGTTATGTGCTGAGAGTGAGATTTGCTTCCTTCTTCGCCGGAGCGGCGGTTGCGTCGTGTCTAGGGTTTTATATTCTCCACAAAGATTACAAGATCGCTTATGAATCCATTTCGCATAAGATGGAAGGGCTGCATGATTCTCTGGAGAGTAGAATTTCGGCACTCGAAAAGCTGAAGCAGAATGATGATTCTCAACATGTTCAAACATCTGAGTAGACACTGGAGGCCAAGCCAGGATAGGGCCTTGGAATATAAAGAATTTAGGAGGAATAACAACAGCACAAAAACTGGTCTTCTTTGTGTGCTAAACAAGATGTCAAGTTTTTTCTTGGAAAATTTGTTGATTTAGTGTATGAATTCTGATCTTTGTTGTTATCAGATTTAGGTTTGTACTGAACTCCAACTTTACTTAAAGTTGATGTGGCTGAATGATCCATCCCTTCACTTTGGATCATAGCCTTCTTCCTTTGCTCTTTTTCATTTTGTCAATGATGGAAGTTTCATGCAAGACTTGGTAATGAAATTTGTGGGAAGCAGAAAAAAAAAAAAATAGCTCCTTAAAGTTCCAGTCATTGTGAATTTTAGAAAGTTT

Coding sequence (CDS)

ATGGGTTATGTGCTGAGAGTGAGATTTGCTTCCTTCTTCGCCGGAGCGGCGGTTGCGTCGTGTCTAGGGTTTTATATTCTCCACAAAGATTACAAGATCGCTTATGAATCCATTTCGCATAAGATGGAAGGGCTGCATGATTCTCTGGAGAGTAGAATTTCGGCACTCGAAAAGCTGAAGCAGAATGATGATTCTCAACATGTTCAAACATCTGAGTAG

Protein sequence

MGYVLRVRFASFFAGAAVASCLGFYILHKDYKIAYESISHKMEGLHDSLESRISALEKLKQNDDSQHVQTSE

Homology

[Close]

BLAST of Sed0025475 vs. NCBI nr
Match: KAG7035773.1 (hypothetical protein SDJN02_02571, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 114.8 bits (286), Expect = 3.1e-22
Identity = 59/72 (81.94%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1  MGYVLRVRFASFFAGAAVASCLGFYILHKDYKIAYESISHKMEGLHDSLESRISALEKLK 60
          MGY+LRVR ASFFAGAAVAS LGFY+L +DYKIAY+SIS KM GLHDSLESRISALEKL 
Sbjct: 27 MGYILRVRLASFFAGAAVASSLGFYVLQRDYKIAYDSISQKMGGLHDSLESRISALEKLN 86

Query: 61 QNDDSQHVQTSE 73
          QND SQHVQ +E
Sbjct: 87 QNDGSQHVQRAE 98

[Close]

BLAST of Sed0025475 vs. NCBI nr
Match: XP_022138131.1 (uncharacterized protein LOC111009377 [Momordica charantia])

HSP 1 Score: 112.8 bits (281), Expect = 1.2e-21
Identity = 59/72 (81.94%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 1  MGYVLRVRFASFFAGAAVASCLGFYILHKDYKIAYESISHKMEGLHDSLESRISALEKLK 60
          MGYVLRVR ASFFAGAAVAS LG Y+L +DYKIAY+SIS KM GLHDSLESRISALEKL 
Sbjct: 1  MGYVLRVRLASFFAGAAVASSLGLYLLQRDYKIAYDSISQKMGGLHDSLESRISALEKLN 60

Query: 61 QNDDSQHVQTSE 73
          QND SQHV T+E
Sbjct: 61 QNDGSQHVHTAE 72

[Close]

BLAST of Sed0025475 vs. NCBI nr
Match: XP_008437667.1 (PREDICTED: uncharacterized protein LOC103483008 [Cucumis melo])

HSP 1 Score: 112.5 bits (280), Expect = 1.6e-21
Identity = 58/72 (80.56%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 1  MGYVLRVRFASFFAGAAVASCLGFYILHKDYKIAYESISHKMEGLHDSLESRISALEKLK 60
          MGYVLRVR ASFFAGAAVAS LG Y+L +DYKIAY+SISHKM GLHDS+ SRISALEKL 
Sbjct: 1  MGYVLRVRMASFFAGAAVASSLGLYLLQRDYKIAYDSISHKMGGLHDSMGSRISALEKLN 60

Query: 61 QNDDSQHVQTSE 73
          QND SQHVQ +E
Sbjct: 61 QNDGSQHVQAAE 72

[Close]

BLAST of Sed0025475 vs. NCBI nr
Match: XP_023551615.1 (uncharacterized protein LOC111809395 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 112.1 bits (279), Expect = 2.0e-21
Identity = 58/72 (80.56%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 1  MGYVLRVRFASFFAGAAVASCLGFYILHKDYKIAYESISHKMEGLHDSLESRISALEKLK 60
          MGYVLRVR ASFFAGAAVAS LG Y+L +DYKIAY+SIS KM GLHDS+ESRISALEKL 
Sbjct: 1  MGYVLRVRLASFFAGAAVASSLGLYLLQRDYKIAYDSISQKMGGLHDSMESRISALEKLN 60

Query: 61 QNDDSQHVQTSE 73
          QND SQHVQ +E
Sbjct: 61 QNDGSQHVQAAE 72

[Close]

BLAST of Sed0025475 vs. NCBI nr
Match: XP_011654572.1 (uncharacterized protein LOC101210533 [Cucumis sativus] >KGN49815.1 hypothetical protein Csa_000286 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 2.0e-21
Identity = 58/72 (80.56%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 1  MGYVLRVRFASFFAGAAVASCLGFYILHKDYKIAYESISHKMEGLHDSLESRISALEKLK 60
          MGYVLRVR ASFFAGAAVAS LG Y+L +DYKIAY+SISHKM GLHDSL SRISALEKL 
Sbjct: 1  MGYVLRVRMASFFAGAAVASSLGLYLLQRDYKIAYDSISHKMGGLHDSLGSRISALEKLN 60

Query: 61 QNDDSQHVQTSE 73
          +ND SQHVQ +E
Sbjct: 61 KNDSSQHVQAAE 72

[Close]

BLAST of Sed0025475 vs. ExPASy TrEMBL
Match: A0A6J1C8U6 (uncharacterized protein LOC111009377 OS=Momordica charantia OX=3673 GN=LOC111009377 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 5.8e-22
Identity = 59/72 (81.94%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 1  MGYVLRVRFASFFAGAAVASCLGFYILHKDYKIAYESISHKMEGLHDSLESRISALEKLK 60
          MGYVLRVR ASFFAGAAVAS LG Y+L +DYKIAY+SIS KM GLHDSLESRISALEKL 
Sbjct: 1  MGYVLRVRLASFFAGAAVASSLGLYLLQRDYKIAYDSISQKMGGLHDSLESRISALEKLN 60

Query: 61 QNDDSQHVQTSE 73
          QND SQHV T+E
Sbjct: 61 QNDGSQHVHTAE 72

[Close]

BLAST of Sed0025475 vs. ExPASy TrEMBL
Match: A0A1S3AUK7 (uncharacterized protein LOC103483008 OS=Cucumis melo OX=3656 GN=LOC103483008 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 7.6e-22
Identity = 58/72 (80.56%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 1  MGYVLRVRFASFFAGAAVASCLGFYILHKDYKIAYESISHKMEGLHDSLESRISALEKLK 60
          MGYVLRVR ASFFAGAAVAS LG Y+L +DYKIAY+SISHKM GLHDS+ SRISALEKL 
Sbjct: 1  MGYVLRVRMASFFAGAAVASSLGLYLLQRDYKIAYDSISHKMGGLHDSMGSRISALEKLN 60

Query: 61 QNDDSQHVQTSE 73
          QND SQHVQ +E
Sbjct: 61 QNDGSQHVQAAE 72

[Close]

BLAST of Sed0025475 vs. ExPASy TrEMBL
Match: A0A6J1IFZ7 (uncharacterized protein LOC111472986 OS=Cucurbita maxima OX=3661 GN=LOC111472986 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 9.9e-22
Identity = 58/72 (80.56%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 1  MGYVLRVRFASFFAGAAVASCLGFYILHKDYKIAYESISHKMEGLHDSLESRISALEKLK 60
          MGYVLRVR ASFFAGAAVAS LG Y+L +DYKIAY+SIS KM GLHDS+ESRISALEKL 
Sbjct: 24 MGYVLRVRLASFFAGAAVASSLGLYLLQRDYKIAYDSISQKMGGLHDSMESRISALEKLN 83

Query: 61 QNDDSQHVQTSE 73
          QND SQHVQ +E
Sbjct: 84 QNDGSQHVQAAE 95

[Close]

BLAST of Sed0025475 vs. ExPASy TrEMBL
Match: A0A0A0KJB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138470 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 9.9e-22
Identity = 58/72 (80.56%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 1  MGYVLRVRFASFFAGAAVASCLGFYILHKDYKIAYESISHKMEGLHDSLESRISALEKLK 60
          MGYVLRVR ASFFAGAAVAS LG Y+L +DYKIAY+SISHKM GLHDSL SRISALEKL 
Sbjct: 1  MGYVLRVRMASFFAGAAVASSLGLYLLQRDYKIAYDSISHKMGGLHDSLGSRISALEKLN 60

Query: 61 QNDDSQHVQTSE 73
          +ND SQHVQ +E
Sbjct: 61 KNDSSQHVQAAE 72

[Close]

BLAST of Sed0025475 vs. ExPASy TrEMBL
Match: A0A6J1E8L7 (uncharacterized protein LOC111430397 OS=Cucurbita moschata OX=3662 GN=LOC111430397 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.9e-21
Identity = 57/72 (79.17%), Postives = 62/72 (86.11%), Query Frame = 0


Query: 1  MGYVLRVRFASFFAGAAVASCLGFYILHKDYKIAYESISHKMEGLHDSLESRISALEKLK 60
          MGYVLRVR ASFF GAAVAS LG Y+L +DYKIAY+SIS KM GLHDS+ESRISALEKL 
Sbjct: 1  MGYVLRVRLASFFTGAAVASSLGLYLLQRDYKIAYDSISQKMGGLHDSMESRISALEKLN 60

Query: 61 QNDDSQHVQTSE 73
          QND SQHVQ +E
Sbjct: 61 QNDGSQHVQAAE 72

[Close]

BLAST of Sed0025475 vs. TAIR 10
Match: AT5G53650.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 83.2 bits (204), Expect = 9.5e-17
Identity = 42/72 (58.33%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 1  MGYVLRVRFASFFAGAAVASCLGFYILHKDYKIAYESISHKMEGLHDSLESRISALEKLK 60
          MGYV RVR ASFFAGAA AS +G  +L+KDYK+A+ESIS + +  HDSL+ RIS LE L+
Sbjct: 1  MGYVFRVRLASFFAGAATASFIGLSVLYKDYKVAHESISQQAKSFHDSLDRRISTLESLR 60

Query: 61 QNDDSQHVQTSE 73
          Q++  Q  +T+E
Sbjct: 61 QSEAPQLAETTE 72

The following BLAST results are available for this feature:

BLAST of Sed0025475 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7035773.1	3.1e-22	81.94	hypothetical protein SDJN02_02571, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022138131.1	1.2e-21	81.94	uncharacterized protein LOC111009377 [Momordica charantia]	[more]
XP_008437667.1	1.6e-21	80.56	PREDICTED: uncharacterized protein LOC103483008 [Cucumis melo]	[more]
XP_023551615.1	2.0e-21	80.56	uncharacterized protein LOC111809395 [Cucurbita pepo subsp. pepo]	[more]
XP_011654572.1	2.0e-21	80.56	uncharacterized protein LOC101210533 [Cucumis sativus] >KGN49815.1 hypothetical ...	[more]

BLAST of Sed0025475 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0025475 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C8U6	5.8e-22	81.94	uncharacterized protein LOC111009377 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A1S3AUK7	7.6e-22	80.56	uncharacterized protein LOC103483008 OS=Cucumis melo OX=3656 GN=LOC103483008 PE=...	[more]
A0A6J1IFZ7	9.9e-22	80.56	uncharacterized protein LOC111472986 OS=Cucurbita maxima OX=3661 GN=LOC111472986...	[more]
A0A0A0KJB2	9.9e-22	80.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138470 PE=4 SV=1	[more]
A0A6J1E8L7	2.9e-21	79.17	uncharacterized protein LOC111430397 OS=Cucurbita moschata OX=3662 GN=LOC1114303...	[more]

BLAST of Sed0025475 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G53650.1	9.5e-17	58.33	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34970	ABC TRANSPORTER A FAMILY PROTEIN	coord: 1..71
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..21 score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0025475.1	Sed0025475.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane