Sed0025286 (gene) Chayote v1

Overview


Name	Sed0025286
Type	gene
Organism	Sechium edule (Chayote v1)
Description	SANT domain-containing protein
Location	LG01: 2302818 .. 2303433 (-)
RNA-Seq Expression	Sed0025286
Synteny	Sed0025286

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAGAGGGAAGATTAGGAAAGGAGAGAGATGGTGATTCTTTTTACACTTACAATTATATTTGGTATTTGTTGGTGTGCATCTTTGTCTTCTCTCCCACTTCCATTTTGTGGTTCCTAAATAGACAAATCATTCAAAATTCTCTCTTTTCCCCTTTTCCCTTTATTATATATCTCCTTCTCCAATAACTCTTCTTGCTCACTTACATCCATGGCTTCCTTGTCCTCCCATGACTCTAGCTCTTGGACTCCCAAGCAAAACAAAGCCTTTGAAAGGGCCTTGGCTATCTTTGACAAGGACACCCCCGATCGTTGGCTCAATGTCGCCAAGGTCGTCGGTGACAAGACTGTCGATGAAGTCAAACAACATTTCGAGCTTCTTGTCGAGGATGTCAAACACATTGAATCTGGTCGCATCCCCTTCCCTAATTACACTTCCTCCGCCTCGGCCACCACCAATGGCAACATCAATGACCAAGAACAAAGGTAGCTCTTTATAATGTACTTTTTAAACTTTCCTCTATCATTTTTCTACAATGTATTATTTCTAAAGTTTGAATGAAAATCAAACTTTCAATATTAGAGAAAAAAAAAATGAATGTTGTTGTTATCATCCCAC

mRNA sequence

TGAGAGGGAAGATTAGGAAAGGAGAGAGATGGTGATTCTTTTTACACTTACAATTATATTTGGTATTTGTTGGTGTGCATCTTTGTCTTCTCTCCCACTTCCATTTTGTGGTTCCTAAATAGACAAATCATTCAAAATTCTCTCTTTTCCCCTTTTCCCTTTATTATATATCTCCTTCTCCAATAACTCTTCTTGCTCACTTACATCCATGGCTTCCTTGTCCTCCCATGACTCTAGCTCTTGGACTCCCAAGCAAAACAAAGCCTTTGAAAGGGCCTTGGCTATCTTTGACAAGGACACCCCCGATCGTTGGCTCAATGTCGCCAAGGTCGTCGGTGACAAGACTGTCGATGAAGTCAAACAACATTTCGAGCTTCTTGTCGAGGATGTCAAACACATTGAATCTGGTCGCATCCCCTTCCCTAATTACACTTCCTCCGCCTCGGCCACCACCAATGGCAACATCAATGACCAAGAACAAAGGTAGCTCTTTATAATGTACTTTTTAAACTTTCCTCTATCATTTTTCTACAATGTATTATTTCTAAAGTTTGAATGAAAATCAAACTTTCAATATTAGAGAAAAAAAAAATGAATGTTGTTGTTATCATCCCAC

Coding sequence (CDS)

ATGGCTTCCTTGTCCTCCCATGACTCTAGCTCTTGGACTCCCAAGCAAAACAAAGCCTTTGAAAGGGCCTTGGCTATCTTTGACAAGGACACCCCCGATCGTTGGCTCAATGTCGCCAAGGTCGTCGGTGACAAGACTGTCGATGAAGTCAAACAACATTTCGAGCTTCTTGTCGAGGATGTCAAACACATTGAATCTGGTCGCATCCCCTTCCCTAATTACACTTCCTCCGCCTCGGCCACCACCAATGGCAACATCAATGACCAAGAACAAAGGTAG

Protein sequence

MASLSSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVEDVKHIESGRIPFPNYTSSASATTNGNINDQEQR

Homology

[Close]

BLAST of Sed0025286 vs. NCBI nr
Match: XP_023515007.1 (transcription factor RADIALIS-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 154.1 bits (388), Expect = 6.0e-34
Identity = 77/94 (81.91%), Postives = 85/94 (90.43%), Query Frame = 0


Query: 1  MASL-SSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVE 60
          MAS+ SSHDS+SW+P QNKAFERALA+FDKDTPDRWLNVAK VGDKT DEVK+HFELLVE
Sbjct: 1  MASISSSHDSTSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTADEVKRHFELLVE 60

Query: 61 DVKHIESGRIPFPNYT-SSASATTNGNINDQEQR 93
          DVKHIESG +PFPNYT SSA  T++ NINDQEQR
Sbjct: 61 DVKHIESGLVPFPNYTSSSAPRTSHDNINDQEQR 94

[Close]

BLAST of Sed0025286 vs. NCBI nr
Match: KAG7035087.1 (Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 152.1 bits (383), Expect = 2.3e-33
Identity = 77/96 (80.21%), Postives = 86/96 (89.58%), Query Frame = 0


Query: 1  MASL-SSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVE 60
          MAS+ SSH SSSW+P QNKAFERALA+FDKDTPDRWLNVAK VGDKTVDEVK+HFELLVE
Sbjct: 1  MASISSSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVE 60

Query: 61 DVKHIESGRIPFPNYTSSASA---TTNGNINDQEQR 93
          DVKHIESG +PFPNYTSS+S+   T+  NINDQE+R
Sbjct: 61 DVKHIESGLVPFPNYTSSSSSAPRTSYDNINDQEKR 96

[Close]

BLAST of Sed0025286 vs. NCBI nr
Match: XP_022946976.1 (transcription factor RADIALIS-like [Cucurbita moschata])

HSP 1 Score: 151.4 bits (381), Expect = 3.9e-33
Identity = 76/96 (79.17%), Postives = 86/96 (89.58%), Query Frame = 0


Query: 1  MASL-SSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVE 60
          MAS+ SSHDS+SW+P QNKAFE ALA+FDKDTPDRWLNVAK VGDKTVDEVK+HFELLVE
Sbjct: 1  MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVE 60

Query: 61 DVKHIESGRIPFPNYTSSASA---TTNGNINDQEQR 93
          DVKHIESG +PFPNYTSS+S+   T++ NIN QEQR
Sbjct: 61 DVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQR 96

[Close]

BLAST of Sed0025286 vs. NCBI nr
Match: KAG6605078.1 (Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 150.2 bits (378), Expect = 8.6e-33
Identity = 76/96 (79.17%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 1  MASL-SSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVE 60
          MAS+ SSH SSSW+P QNKAFERALA+FDKDTPDRWLNVAK VGDKTVDEVK+HFELLVE
Sbjct: 1  MASISSSHGSSSWSPNQNKAFERALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVE 60

Query: 61 DVKHIESGRIPFPNYTSSASAT---TNGNINDQEQR 93
          DVKHIESG +PFPNYTSS+S+    +  NINDQE+R
Sbjct: 61 DVKHIESGLVPFPNYTSSSSSAPRISYDNINDQEKR 96

[Close]

BLAST of Sed0025286 vs. NCBI nr
Match: XP_022944318.1 (protein RADIALIS-like 2 [Cucurbita moschata])

HSP 1 Score: 149.4 bits (376), Expect = 1.5e-32
Identity = 78/96 (81.25%), Postives = 84/96 (87.50%), Query Frame = 0


Query: 1  MASL-SSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVV-GDKTVDEVKQHFELLV 60
          MAS+ SSH SSSWTPKQNKAFERALA+FDKDTPDRWLNVAK V G KT DEVK HF+LLV
Sbjct: 1  MASMASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60

Query: 61 EDVKHIESGRIPFPNY--TSSASATTNGNINDQEQR 93
          EDVKHIESG +PFPNY  T+SAS T+N NINDQEQR
Sbjct: 61 EDVKHIESGHVPFPNYSSTASASGTSNANINDQEQR 96

[Close]

BLAST of Sed0025286 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.8e-26
Identity = 55/91 (60.44%), Postives = 73/91 (80.22%), Query Frame = 0


Query: 2  ASLSSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVEDV 61
          +S+SS  S SWT KQNKAFE+ALA +D+DTP+RW NVAKVVG KT +EVK+H+ELLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KHIESGRIPFPNYTSSASATTNGNINDQEQR 93
            IE+G +PFPNY +S    TNG ++ +E+R
Sbjct: 64 NSIENGHVPFPNYRTSGGC-TNGRLSQEEKR 93

[Close]

BLAST of Sed0025286 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.6e-24
Identity = 49/90 (54.44%), Postives = 70/90 (77.78%), Query Frame = 0


Query: 3  SLSSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVEDVK 62
          S+SS+ S SWT KQNKAFERALA++D+DTPDRW NVA+ VG KT +E K+ ++LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 HIESGRIPFPNYTSSASATTNGNINDQEQR 93
           IE+G +PFP+Y ++   +  G + D+E+R
Sbjct: 65 SIENGHVPFPDYKTTTGNSNRGRLRDEEKR 94

[Close]

BLAST of Sed0025286 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.3e-23
Identity = 49/81 (60.49%), Postives = 65/81 (80.25%), Query Frame = 0


Query: 12 WTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVEDVKHIESGRIPF 71
          W+ K+NKAFERALA++DKDTPDRW NVA+ V  +T +EVK+H+E+LVED+K+IESG++PF
Sbjct: 11 WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPF 70

Query: 72 PNYTSSASATTNGNINDQEQR 93
          PNY      TT GN+   E+R
Sbjct: 71 PNY-----RTTGGNMKTDEKR 86

[Close]

BLAST of Sed0025286 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-22
Identity = 54/92 (58.70%), Postives = 69/92 (75.00%), Query Frame = 0


Query: 1  MASLSSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVED 60
          MAS S    S WT  QNK FERALA++DKDTPDRW NVAK VG KTV+EVK+H+++LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKHIESGRIPFPNYTSSASATTNGNINDQEQR 93
          + +IE+GR+P PNY +  S   + +IND + R
Sbjct: 61 LINIETGRVPLPNYKTFES--NSRSINDFDTR 90

[Close]

BLAST of Sed0025286 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 5.5e-22
Identity = 50/92 (54.35%), Postives = 66/92 (71.74%), Query Frame = 0


Query: 1  MASLSSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVED 60
          MAS S   SSSWT KQNK FERALA++DKDTPDRW NVAK VG K+ +EVK+H+++LVED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKHIESGRIPFPNYTSSASATTNGNINDQEQR 93
          + +IE   +P P Y +    + +  I+D + R
Sbjct: 61 LMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLR 92

[Close]

BLAST of Sed0025286 vs. ExPASy TrEMBL
Match: A0A6J1G543 (transcription factor RADIALIS-like OS=Cucurbita moschata OX=3662 GN=LOC111450995 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.9e-33
Identity = 76/96 (79.17%), Postives = 86/96 (89.58%), Query Frame = 0


Query: 1  MASL-SSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVE 60
          MAS+ SSHDS+SW+P QNKAFE ALA+FDKDTPDRWLNVAK VGDKTVDEVK+HFELLVE
Sbjct: 1  MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVE 60

Query: 61 DVKHIESGRIPFPNYTSSASA---TTNGNINDQEQR 93
          DVKHIESG +PFPNYTSS+S+   T++ NIN QEQR
Sbjct: 61 DVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQR 96

[Close]

BLAST of Sed0025286 vs. ExPASy TrEMBL
Match: A0A6J1FXX9 (protein RADIALIS-like 2 OS=Cucurbita moschata OX=3662 GN=LOC111448798 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 7.1e-33
Identity = 78/96 (81.25%), Postives = 84/96 (87.50%), Query Frame = 0


Query: 1  MASL-SSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVV-GDKTVDEVKQHFELLV 60
          MAS+ SSH SSSWTPKQNKAFERALA+FDKDTPDRWLNVAK V G KT DEVK HF+LLV
Sbjct: 1  MASMASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60

Query: 61 EDVKHIESGRIPFPNY--TSSASATTNGNINDQEQR 93
          EDVKHIESG +PFPNY  T+SAS T+N NINDQEQR
Sbjct: 61 EDVKHIESGHVPFPNYSSTASASGTSNANINDQEQR 96

[Close]

BLAST of Sed0025286 vs. ExPASy TrEMBL
Match: A0A6J1CYR5 (protein RADIALIS-like 2 OS=Momordica charantia OX=3673 GN=LOC111015511 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 9.3e-33
Identity = 70/93 (75.27%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 1  MASLSSHDSS-SWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVE 60
          MA++SS DSS SWTP QNKAFERALA+FDKDTPDRW NVA  VG KT DEVK+HF+LLVE
Sbjct: 1  MAAMSSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVE 60

Query: 61 DVKHIESGRIPFPNYTSSASATTNGNINDQEQR 93
          DVKHIESGRIPFPNYT++ + ++NGN+ND+E+R
Sbjct: 61 DVKHIESGRIPFPNYTATTTGSSNGNVNDEEKR 93

[Close]

BLAST of Sed0025286 vs. ExPASy TrEMBL
Match: A0A6J1JBS7 (protein RADIALIS-like 2 OS=Cucurbita maxima OX=3661 GN=LOC111484324 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 6.0e-32
Identity = 76/96 (79.17%), Postives = 84/96 (87.50%), Query Frame = 0


Query: 1  MASL-SSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVV-GDKTVDEVKQHFELLV 60
          MAS+ SSH SSSWTPK+NKAFERALA+FDKDTPDRWLNVAK V G KT DEVK HF+LLV
Sbjct: 1  MASMSSSHHSSSWTPKENKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60

Query: 61 EDVKHIESGRIPFPNYTSSASA--TTNGNINDQEQR 93
          EDVKHIE G +PFPNY+S+ASA  T+N NINDQEQR
Sbjct: 61 EDVKHIEFGHVPFPNYSSTASATGTSNANINDQEQR 96

[Close]

BLAST of Sed0025286 vs. ExPASy TrEMBL
Match: A0A0A0LL58 (MYB transcription factor MYB142 OS=Cucumis sativus OX=3659 GN=Csa_2G247060 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.9e-30
Identity = 74/95 (77.89%), Postives = 82/95 (86.32%), Query Frame = 0


Query: 1  MASLSSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVV-GDKTVDEVKQHFELLVE 60
          MAS+SS  SSSWTP QNKAFERALA+FDKDTPDRWLNVAK V G KT DEVK+HF+ LVE
Sbjct: 1  MASISS-SSSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVE 60

Query: 61 DVKHIESGRIPFPNYTSSASA--TTNGNINDQEQR 93
          DVKHIESGR+PFP YTSS+S+  T+N NI DQEQR
Sbjct: 61 DVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQR 94

[Close]

BLAST of Sed0025286 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 119.0 bits (297), Expect = 2.0e-27
Identity = 55/91 (60.44%), Postives = 73/91 (80.22%), Query Frame = 0


Query: 2  ASLSSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVEDV 61
          +S+SS  S SWT KQNKAFE+ALA +D+DTP+RW NVAKVVG KT +EVK+H+ELLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KHIESGRIPFPNYTSSASATTNGNINDQEQR 93
            IE+G +PFPNY +S    TNG ++ +E+R
Sbjct: 64 NSIENGHVPFPNYRTSGGC-TNGRLSQEEKR 93

[Close]

BLAST of Sed0025286 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 112.5 bits (280), Expect = 1.9e-25
Identity = 49/90 (54.44%), Postives = 70/90 (77.78%), Query Frame = 0


Query: 3  SLSSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVEDVK 62
          S+SS+ S SWT KQNKAFERALA++D+DTPDRW NVA+ VG KT +E K+ ++LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 HIESGRIPFPNYTSSASATTNGNINDQEQR 93
           IE+G +PFP+Y ++   +  G + D+E+R
Sbjct: 65 SIENGHVPFPDYKTTTGNSNRGRLRDEEKR 94

[Close]

BLAST of Sed0025286 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 107.1 bits (266), Expect = 7.8e-24
Identity = 54/92 (58.70%), Postives = 69/92 (75.00%), Query Frame = 0


Query: 1  MASLSSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVED 60
          MAS S    S WT  QNK FERALA++DKDTPDRW NVAK VG KTV+EVK+H+++LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKHIESGRIPFPNYTSSASATTNGNINDQEQR 93
          + +IE+GR+P PNY +  S   + +IND + R
Sbjct: 61 LINIETGRVPLPNYKTFES--NSRSINDFDTR 90

[Close]

BLAST of Sed0025286 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 107.1 bits (266), Expect = 7.8e-24
Identity = 54/92 (58.70%), Postives = 69/92 (75.00%), Query Frame = 0


Query: 1  MASLSSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVED 60
          MAS S    S WT  QNK FERALA++DKDTPDRW NVAK VG KTV+EVK+H+++LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKHIESGRIPFPNYTSSASATTNGNINDQEQR 93
          + +IE+GR+P PNY +  S   + +IND + R
Sbjct: 61 LINIETGRVPLPNYKTFES--NSRSINDFDTR 90

[Close]

BLAST of Sed0025286 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 104.8 bits (260), Expect = 3.9e-23
Identity = 50/92 (54.35%), Postives = 66/92 (71.74%), Query Frame = 0


Query: 1  MASLSSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVED 60
          MAS S   SSSWT KQNK FERALA++DKDTPDRW NVAK VG K+ +EVK+H+++LVED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKHIESGRIPFPNYTSSASATTNGNINDQEQR 93
          + +IE   +P P Y +    + +  I+D + R
Sbjct: 61 LMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLR 92

The following BLAST results are available for this feature:

BLAST of Sed0025286 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023515007.1	6.0e-34	81.91	transcription factor RADIALIS-like [Cucurbita pepo subsp. pepo]	[more]
KAG7035087.1	2.3e-33	80.21	Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. argyrosper...	[more]
XP_022946976.1	3.9e-33	79.17	transcription factor RADIALIS-like [Cucurbita moschata]	[more]
KAG6605078.1	8.6e-33	79.17	Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022944318.1	1.5e-32	81.25	protein RADIALIS-like 2 [Cucurbita moschata]	[more]

BLAST of Sed0025286 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JVB8	2.8e-26	60.44	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q9SIJ5	2.6e-24	54.44	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
Q58FS3	1.3e-23	60.49	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
Q1A173	1.1e-22	58.70	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
Q8GW75	5.5e-22	54.35	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]

BLAST of Sed0025286 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G543	1.9e-33	79.17	transcription factor RADIALIS-like OS=Cucurbita moschata OX=3662 GN=LOC111450995...	[more]
A0A6J1FXX9	7.1e-33	81.25	protein RADIALIS-like 2 OS=Cucurbita moschata OX=3662 GN=LOC111448798 PE=4 SV=1	[more]
A0A6J1CYR5	9.3e-33	75.27	protein RADIALIS-like 2 OS=Momordica charantia OX=3673 GN=LOC111015511 PE=4 SV=1	[more]
A0A6J1JBS7	6.0e-32	79.17	protein RADIALIS-like 2 OS=Cucurbita maxima OX=3661 GN=LOC111484324 PE=4 SV=1	[more]
A0A0A0LL58	1.9e-30	77.89	MYB transcription factor MYB142 OS=Cucumis sativus OX=3659 GN=Csa_2G247060 PE=4 ...	[more]

BLAST of Sed0025286 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39250.1	2.0e-27	60.44	RAD-like 1	[more]
AT2G21650.1	1.9e-25	54.44	Homeodomain-like superfamily protein	[more]
AT1G75250.1	7.8e-24	58.70	RAD-like 6	[more]
AT1G75250.2	7.8e-24	58.70	RAD-like 6	[more]
AT1G19510.1	3.9e-23	54.35	RAD-like 5	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 8..60 e-value: 6.3E-6 score: 35.7
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 12..58 e-value: 2.31315E-5 score: 36.3994
None	No IPR available	GENE3D	1.10.10.60		coord: 3..71 e-value: 3.7E-22 score: 79.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..92
None	No IPR available	PANTHER	PTHR43952:SF74	PROTEIN RADIALIS-LIKE 2	coord: 5..76
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 5..76
IPR017884	SANT domain	PROSITE	PS51293	SANT	coord: 7..62 score: 9.96536
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 10..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0025286.1	Sed0025286.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity