Sed0025072 (gene) Chayote v1

Overview


Name	Sed0025072
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Transcription initiation factor IIF subunit beta
Location	LG03: 264684 .. 267066 (-)
RNA-Seq Expression	Sed0025072
Synteny	Sed0025072

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGTCCATGACAAATCCATCGACCGCTGCAGTTCAAGAAAACTCCAAAGCGATAACAACATTGCCGTCGGAACCAACTTCTTAGAGACGAACAAGGCGGACACAGAAATGCGGCTCTTTAAATCCCCTCAACCCGTATCTGGCGCCTTTCTAATTCCCCGGGTTACCCTTCTCGTCCGGTCGCTAAGGTCACCATTTCGGTTGATCCTCTGCAATCGAATAACGTCGATGATGATGATAATTCTTCTGCAGATGAGGTATATAATCTGTTTCCATTAATTGGAGTTATATTCATAGATTACTCACATGTTTCTTTCTTGTTAATTGATCTTTCACTATTACGTTCTCGATCCTGATGTTTTTCTATGAATTATATCAACATCATCCATTTGCTTGCTTTCTTCAGCTAACAATTGATCTACATGTGATTTTAGTTCACTATGGAATTGACTGGCTCTGACTCTGAATATGCATTTAGCGCCTACTCGTTGAACATGTCCACATACTTCTATCCGATGTCCGTATTTTCTGACTCAACACAAGGTTGGTTTATGTAGAGCTCTAGCCTTGTCACTAAGAAATGACCCGTCGATATTTATGATGCTTTCAAATGTTTGCTTGTAAGCTGGATGAAATACTGTTACTCTGATTGTGATATGAAATCCAATTTCATCAATCTTGGATGTGAATATCTTTCTTTATTTACTTTAGACCTATGGGCATCAATACCAACAGGGGTTCTTAATCATTTTCCATTCAGCCTTTTGCACCAGGGTTCTTGAATGTTAGTAGAGAGGATTTACAATATTGATTGAGTTATAGGTATTAATTGGGAACTTGTAGTCAAATTCTACCAGTTTGATCTTTCATCTTGAAATTAAAACTTATTTAAAAGCCTAGCAAATAATACCGATAGTTTTTGTGTACTAGAGAGAGACTTCAAGAAAGAAACCTAGATCAGCTATAACTTGTAGTTTTTATGTTCAAATTTTGTAATTATTCACTGGACGAACATATATATATGACCGGTAAGCTTTGTGGGTGTTGTAGAATATCTGACTTATGGTCTGTTGTTGATTCATTTTAGGGAAGGTTACTGTCGAAGGAAAAATACTGAAAAAATTTGACATGAAGCCGCAGAATTTTGCGAGGTACGGGAAACTGTATCGGGAAAGAAATCGCAAGCGTGAGACCGAGAGGAGAAAGACTAAGGTCTCCTTTGTAACTTGCTGCTGTTATGCATTCATTGTACAATATGGGTGTTTGGCTTATTTGTTTCTTGTTAAAAATTCCAACTATTCCATACATACAGGTGATTGACCATGTCCCAGAAGAACATATGAGCCCTATGCCAAGGATGGATGTACGTGTTTTCATTTGGACGCCTTCTTAATTTCCACTTTGTTTCACTTTCATACATGTTTTTCTTTAAGACCCTGGAAACTTGGAGCTTTGCTCCTCTAAACCACCCCGTCCCTAAACTTGGAAGCGAAATTTGGGGGTCACTTTGATACATACTTTTGTAAGGATTGTAGTCTCTTTCTTTCTTTTTGAAAAGGTAAGGATACTAGTGTTACAAGAACAGAATCTGAATCATTCTCTCAAGTACATCGATCGCCTTCTCTCAGTCTGAATCATTCTTTCTCTATTTATAACAAGCTCTCTTAGTTACTAATACTCCTTATTACTTATACTATGCCTGGTACCTTACAGCTTTGCTGTATCTATGTACCCTTGAAGTCAGTGAAAAAGAAGGTTGTCCAAGAATATTACGTTTTACTATTGTGAGCATCTTTGCAGATACTAAATTTGGTACTGGAGAAAAAGAAAGCGACCAGGAGAAGGAGCAGGAGGGTGAGGAAGGATAGTGGTGAATTGGAGAGCATCATTTTTAGGCTCTTTGAAACACAGCCATATTGGACATTCAAACAATTGATTCAACATACCGACCAGCCCGAAGTAAGATTTATCTTCACTTCTTAACACCTTGTTGGAGATATTCATTGTGGTGCAATTATCCCACATTGATAAGGTGAGGATTCTTCAACACATTTATAAAGGATATGAGTTACTCCCCTCATTGCCAATTGGTTTTGAGGTGGAACCCCATATTCTCTAATACACCTACTTCCAATACTAACTTAGCACTTGTAGCTGTTCGTCAGCTGCTTTTTCACTCGCAAAAAAAATGTACTGAGTTGCTAAGGATGAAACATCCATCAGGGTCTGCATGTTGTAAAAATCTTTGTTTATTTTGCAGCAATATATGAGAGAAATCCTTAAAAGGCTTTGTGTCTCCTGCAAAAAGGGTGTTGAGAAAAGAAAATGTTATGAGCTGAAGCCAGAATTCCAAGGAGGAAATGAGATTGGTGTAATTTGA

mRNA sequence

ATGGCCGTCCATGACAAATCCATCGACCGCTGCAGTTCAAGAAAACTCCAAAGCGATAACAACATTGCCGTCGGAACCAACTTCTTAGAGACGAACAAGGCGGACACAGAAATGCGGCTCTTTAAATCCCCTCAACCCGTATCTGGCGCCTTTCTAATTCCCCGGGTTACCCTTCTCTTCACTATGGAATTGACTGGCTCTGACTCTGAATATGCATTTAGCGCCTACTCGTTGAACATGTCCACATACTTCTATCCGATGTCCGTATTTTCTGACTCAACACAAGGGAAGGTTACTGTCGAAGGAAAAATACTGAAAAAATTTGACATGAAGCCGCAGAATTTTGCGAGGTACGGGAAACTGTATCGGGAAAGAAATCGCAAGCGTGAGACCGAGAGGAGAAAGACTAAGGTGATTGACCATGTCCCAGAAGAACATATGAGCCCTATGCCAAGGATGGATGTACGTAAAAAGAAAGCGACCAGGAGAAGGAGCAGGAGGGTGAGGAAGGATAGTGGTGAATTGGAGAGCATCATTTTTAGGCTCTTTGAAACACAGCCATATTGGACATTCAAACAATTGATTCAACATACCGACCAGCCCGAACAATATATGAGAGAAATCCTTAAAAGGCTTTGTGTCTCCTGCAAAAAGGGTGTTGAGAAAAGAAAATGTTATGAGCTGAAGCCAGAATTCCAAGGAGGAAATGAGATTGGTGTAATTTGA

Coding sequence (CDS)

ATGGCCGTCCATGACAAATCCATCGACCGCTGCAGTTCAAGAAAACTCCAAAGCGATAACAACATTGCCGTCGGAACCAACTTCTTAGAGACGAACAAGGCGGACACAGAAATGCGGCTCTTTAAATCCCCTCAACCCGTATCTGGCGCCTTTCTAATTCCCCGGGTTACCCTTCTCTTCACTATGGAATTGACTGGCTCTGACTCTGAATATGCATTTAGCGCCTACTCGTTGAACATGTCCACATACTTCTATCCGATGTCCGTATTTTCTGACTCAACACAAGGGAAGGTTACTGTCGAAGGAAAAATACTGAAAAAATTTGACATGAAGCCGCAGAATTTTGCGAGGTACGGGAAACTGTATCGGGAAAGAAATCGCAAGCGTGAGACCGAGAGGAGAAAGACTAAGGTGATTGACCATGTCCCAGAAGAACATATGAGCCCTATGCCAAGGATGGATGTACGTAAAAAGAAAGCGACCAGGAGAAGGAGCAGGAGGGTGAGGAAGGATAGTGGTGAATTGGAGAGCATCATTTTTAGGCTCTTTGAAACACAGCCATATTGGACATTCAAACAATTGATTCAACATACCGACCAGCCCGAACAATATATGAGAGAAATCCTTAAAAGGCTTTGTGTCTCCTGCAAAAAGGGTGTTGAGAAAAGAAAATGTTATGAGCTGAAGCCAGAATTCCAAGGAGGAAATGAGATTGGTGTAATTTGA

Protein sequence

MAVHDKSIDRCSSRKLQSDNNIAVGTNFLETNKADTEMRLFKSPQPVSGAFLIPRVTLLFTMELTGSDSEYAFSAYSLNMSTYFYPMSVFSDSTQGKVTVEGKILKKFDMKPQNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMPRMDVRKKKATRRRSRRVRKDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQYMREILKRLCVSCKKGVEKRKCYELKPEFQGGNEIGVI

Homology

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BLAST of Sed0025072 vs. NCBI nr
Match: XP_038889594.1 (general transcription factor IIF subunit 2-like [Benincasa hispida] >XP_038889595.1 general transcription factor IIF subunit 2-like [Benincasa hispida] >XP_038889596.1 general transcription factor IIF subunit 2-like [Benincasa hispida])

HSP 1 Score: 244.2 bits (622), Expect = 1.2e-60
Identity = 154/272 (56.62%), Postives = 173/272 (63.60%), Query Frame = 0


Query: 1   MAVHDKSIDRCSSRKLQSDNNIAVGTNFLETNKADTEMRLFKSPQPVSGAF--------- 60
           M V  KSIDRCSSRKLQ +NN  VGT+FLETNKAD  M L K PQ V+ A          
Sbjct: 1   MDVDGKSIDRCSSRKLQINNNSVVGTDFLETNKADRAMWLLKCPQVVTRALSNSPDGPSR 60

Query: 61  ----LIPRVTLL------------FTMELTGSDSEYAFSAYSLNMSTYFYPMSVFSDSTQ 120
               +I  V  L            FTMEL G+DS     +YSLNMST F PMSVFS+S+Q
Sbjct: 61  PVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNTLRSYSLNMSTDFIPMSVFSESSQ 120

Query: 121 GKVTVEGKILKKFDMKP--QNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMPRM 180
           GK TVEGKIL KFDMKP  QN  RYGKL RER  K  T+ R+ +VIDHV   HM PMP M
Sbjct: 121 GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGM 180

Query: 181 DV------RKKKATRRRS--RRVRKDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQYM 238
           DV       KKK   + S  +R+RK+ GELE IIFRLFE Q YWT KQLIQ TDQPEQYM
Sbjct: 181 DVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQSYWTSKQLIQETDQPEQYM 240

[Close]

BLAST of Sed0025072 vs. NCBI nr
Match: XP_022133483.1 (general transcription factor IIF subunit 2-like [Momordica charantia])

HSP 1 Score: 239.6 bits (610), Expect = 2.8e-59
Identity = 154/275 (56.00%), Postives = 175/275 (63.64%), Query Frame = 0


Query: 1   MAVHDKSIDRCSSRKLQSDNN--IAVGTNFLETNKADTEMRLFKSPQPVSGAF------- 60
           M V DK IDRCSSRKLQ++NN     GT+FLETNKAD  M L K PQ V+ A        
Sbjct: 1   MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGP 60

Query: 61  ------LIPRVTLL------------FTMELTGSDSEYAFSAYSLNMSTYFYPMSVFSDS 120
                 +I  V  L            FTMEL G+DS  +  +YSLNMST F PMSVFS+S
Sbjct: 61  SRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVFSES 120

Query: 121 TQGKVTVEGKILKKFDMKP--QNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMP 180
             GK TVEGKIL KFDMKP  QN  RYGKL RER  K  T+ R+ +VIDHV   HM PMP
Sbjct: 121 PPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMP 180

Query: 181 RMDV------RKKKATRRRS--RRVRKDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQ 238
            MDV       KKK   + S  +R+RK+ GELE IIFRLFE QPYWT KQLIQ TDQPEQ
Sbjct: 181 GMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQ 240

[Close]

BLAST of Sed0025072 vs. NCBI nr
Match: XP_004143805.1 (general transcription factor IIF subunit 2 isoform X3 [Cucumis sativus] >KGN51637.2 hypothetical protein Csa_008814 [Cucumis sativus])

HSP 1 Score: 236.1 bits (601), Expect = 3.1e-58
Identity = 151/273 (55.31%), Postives = 175/273 (64.10%), Query Frame = 0


Query: 1   MAVHDKSIDRCSSRKLQSDNN-IAVGTNFLETNKADTEMRLFKSPQPVSGAF-------- 60
           M V  KSIDR +SRK Q++NN I VGT+FLETNKAD  M L K PQ V+ A         
Sbjct: 1   MDVDGKSIDRSTSRKHQTNNNSIVVGTDFLETNKADRAMWLLKCPQLVTRALSNSPDAPS 60

Query: 61  -----LIPRVTLL------------FTMELTGSDSEYAFSAYSLNMSTYFYPMSVFSDST 120
                +I  V  L            FTMEL  +DS  A  +YSLNMST F PMSVFS+S+
Sbjct: 61  RPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALRSYSLNMSTDFIPMSVFSESS 120

Query: 121 QGKVTVEGKILKKFDMKP--QNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMPR 180
           QGK T+EGKIL KFDMKP  QN  RYGKL RER  K  T+ R+ +VIDHV   HM PMP 
Sbjct: 121 QGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPG 180

Query: 181 MDV------RKKKATRRRS--RRVRKDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQY 238
           MDV       KKK   + S  +R+RK+ GELE IIF+LFE QPYWT KQLIQ TDQPEQY
Sbjct: 181 MDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFKLFERQPYWTSKQLIQETDQPEQY 240

[Close]

BLAST of Sed0025072 vs. NCBI nr
Match: XP_008465665.1 (PREDICTED: general transcription factor IIF subunit 2 isoform X2 [Cucumis melo])

HSP 1 Score: 235.7 bits (600), Expect = 4.1e-58
Identity = 151/273 (55.31%), Postives = 175/273 (64.10%), Query Frame = 0


Query: 1   MAVHDKSIDRCSSRKLQ-SDNNIAVGTNFLETNKADTEMRLFKSPQPVSGAF-------- 60
           M V  KSIDR +SRK Q ++NNI VGT+FLETNKAD  M L K PQ V+ A         
Sbjct: 1   MDVDGKSIDRSTSRKHQTNNNNIVVGTDFLETNKADRAMWLLKCPQVVTRALSNSPDAPS 60

Query: 61  -----LIPRVTLL------------FTMELTGSDSEYAFSAYSLNMSTYFYPMSVFSDST 120
                +I  V  L            FTMEL  +DS  A  +Y+LNMST F PMSVFS+S+
Sbjct: 61  RPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALRSYTLNMSTDFIPMSVFSESS 120

Query: 121 QGKVTVEGKILKKFDMKP--QNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMPR 180
           QGK TVEGKIL KFDMKP  QN  RYGKL RER  K  T+ R+ +VIDHV   HM PMP 
Sbjct: 121 QGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPG 180

Query: 181 MDV------RKKKATRRRS--RRVRKDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQY 238
           MDV       KKK   + S  +R+RK+ GELE IIF+LFE QPYWT KQLIQ TDQPEQY
Sbjct: 181 MDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFKLFERQPYWTSKQLIQETDQPEQY 240

[Close]

BLAST of Sed0025072 vs. NCBI nr
Match: XP_022964851.1 (general transcription factor IIF subunit 2-like [Cucurbita moschata])

HSP 1 Score: 233.0 bits (593), Expect = 2.7e-57
Identity = 149/264 (56.44%), Postives = 168/264 (63.64%), Query Frame = 0


Query: 5   DKSIDRCSSRKLQSDNNIAVGTNFLETNKADTEMRLFKSPQPVSGAF------------- 64
           DK IDR SSRKL S+++ A GT+FLETNKAD  M L K PQ V+ A              
Sbjct: 5   DKPIDRGSSRKLHSNSSTAAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAK 64

Query: 65  LIPRVTLL------------FTMELTGSDSEYAFSAYSLNMSTYFYPMSVFSDSTQGKVT 124
           +I  V  L            FTMEL  +DS  A  AYSLNMST F PMSVFS+S QGK T
Sbjct: 65  VIVSVDPLQSNDDDDSSSTEFTMELADTDSGKALRAYSLNMSTDFIPMSVFSESAQGKFT 124

Query: 125 VEGKILKKFDMKP--QNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMPRMDV-- 184
           VEGKIL KFDMKP  QN   YGKL RER  K  T+ R+ +VIDHV   HM PMP MDV  
Sbjct: 125 VEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLS 184

Query: 185 ----RKKKATRRRS--RRVRKDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQYMREIL 234
                KKK   + S  +R+RK+ GELE IIFRLFE QPYWT KQLIQ TDQPEQYM+EIL
Sbjct: 185 FGAAEKKKVVSKGSENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEIL 244

[Close]

BLAST of Sed0025072 vs. ExPASy Swiss-Prot
Match: Q8R0A0 (General transcription factor IIF subunit 2 OS=Mus musculus OX=10090 GN=Gtf2f2 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-09
Identity = 40/149 (26.85%), Postives = 81/149 (54.36%), Query Frame = 0


Query: 87  MSVFSDSTQGKVTVEGKILKKFDMKPQNFARYGKLYRERNRKRETERRKTKVIDHVPEEH 146
           ++VF++S+  K+++EG ++++ + +P     Y KL R +  +     R ++ +D V   +
Sbjct: 93  LTVFTESSSDKLSLEGIVVQRAECRPAASENYMKLKRLQIEESSKPVRLSQQLDKVVTTN 152

Query: 147 MSPMP--RMDVRKKKATRRRSRRVRKDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQY 206
             P+   + ++  ++  +   +R R D   +  ++F  FE   Y+  K L+  T QP  Y
Sbjct: 153 YKPVANHQYNIEYERKKKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGY 212

Query: 207 MREILKRLCVSCKKGVEKRKCYELKPEFQ 234
           ++EILK + +   KG+ K   +ELKPE++
Sbjct: 213 LKEILKEIGIQNVKGIHK-NTWELKPEYR 240

[Close]

BLAST of Sed0025072 vs. ExPASy Swiss-Prot
Match: P13984 (General transcription factor IIF subunit 2 OS=Homo sapiens OX=9606 GN=GTF2F2 PE=1 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 2.1e-09
Identity = 40/149 (26.85%), Postives = 81/149 (54.36%), Query Frame = 0


Query: 87  MSVFSDSTQGKVTVEGKILKKFDMKPQNFARYGKLYRERNRKRETERRKTKVIDHVPEEH 146
           ++VF++S+  K+++EG ++++ + +P     Y +L R +  +     R ++ +D V   +
Sbjct: 93  LTVFTESSSDKLSLEGIVVQRAECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTN 152

Query: 147 MSPMP--RMDVRKKKATRRRSRRVRKDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQY 206
             P+   + ++  ++  +   +R R D   +  ++F  FE   Y+  K L+  T QP  Y
Sbjct: 153 YKPVANHQYNIEYERKKKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVY 212

Query: 207 MREILKRLCVSCKKGVEKRKCYELKPEFQ 234
           ++EILK + V   KG+ K   +ELKPE++
Sbjct: 213 LKEILKEIGVQNVKGIHK-NTWELKPEYR 240

[Close]

BLAST of Sed0025072 vs. ExPASy Swiss-Prot
Match: Q01750 (General transcription factor IIF subunit 2 OS=Rattus norvegicus OX=10116 GN=Gtf2f2 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.8e-09
Identity = 40/149 (26.85%), Postives = 80/149 (53.69%), Query Frame = 0


Query: 87  MSVFSDSTQGKVTVEGKILKKFDMKPQNFARYGKLYRERNRKRETERRKTKVIDHVPEEH 146
           ++VF++S+  K+++EG ++++ + +P     Y KL R +  +     R ++  D V   +
Sbjct: 93  LTVFTESSSDKLSLEGIVVQRAECRPAASENYMKLKRLQIEESSKPVRLSQQADKVVTTN 152

Query: 147 MSPMP--RMDVRKKKATRRRSRRVRKDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQY 206
             P+   + ++  ++  +   +R R D   +  ++F  FE   Y+  K L+  T QP  Y
Sbjct: 153 YKPVANHQYNIEYERKKKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGY 212

Query: 207 MREILKRLCVSCKKGVEKRKCYELKPEFQ 234
           ++EILK + +   KG+ K   +ELKPE++
Sbjct: 213 LKEILKEIGIQNVKGIHK-NTWELKPEYR 240

[Close]

BLAST of Sed0025072 vs. ExPASy Swiss-Prot
Match: Q2T9L9 (General transcription factor IIF subunit 2 OS=Bos taurus OX=9913 GN=GTF2F2 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.7e-09
Identity = 39/149 (26.17%), Postives = 81/149 (54.36%), Query Frame = 0


Query: 87  MSVFSDSTQGKVTVEGKILKKFDMKPQNFARYGKLYRERNRKRETERRKTKVIDHVPEEH 146
           ++VF++S+  K+++EG ++++ + +P     Y +L R +  +     R ++ +D V   +
Sbjct: 93  LTVFTESSSDKLSLEGIVVQRAECRPAANENYMRLKRLQIEESSKPVRLSQQLDKVVTTN 152

Query: 147 MSPMP--RMDVRKKKATRRRSRRVRKDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQY 206
             P+   + ++  ++  +   +R R D   +  ++F  FE   Y+  K L+  T QP  Y
Sbjct: 153 YKPVANHQYNIEYERKKKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVSY 212

Query: 207 MREILKRLCVSCKKGVEKRKCYELKPEFQ 234
           +++ILK + V   KG+ K   +ELKPE++
Sbjct: 213 LKDILKEIGVQNVKGIHK-NTWELKPEYR 240

[Close]

BLAST of Sed0025072 vs. ExPASy Swiss-Prot
Match: Q54KT7 (General transcription factor IIF subunit 2 OS=Dictyostelium discoideum OX=44689 GN=gtf2f2 PE=3 SV=2)

HSP 1 Score: 58.9 bits (141), Expect = 9.0e-08
Identity = 43/156 (27.56%), Postives = 82/156 (52.56%), Query Frame = 0


Query: 86  PMSVFSDSTQGKVTVEGKILKKFDMK-PQNFARYGKLYRERNRKRETERRKTKVIDH--- 145
           P+ +FS+   G + +EG I  + D+K      +Y  L + R+ K  T+ R T+VID    
Sbjct: 79  PLKIFSEDKDGALALEGNIGLRCDIKIDVESPQYRDLMKSRHTKYNTKTRMTQVIDESEL 138

Query: 146 ----VPEEHMSPMPRMDVRKKKATRRRSRRVRKDSGELESIIFRLFETQPYWTFKQLIQH 205
               + + +   +  + + +KK +  +  ++ +D  E+  +IF  F  + +   K L   
Sbjct: 139 FTPTLFDANKVKVSTVGITQKKKSTDKKEKLPED--EVLDLIFSAFRAEKHLDLKTLESF 198

Query: 206 TDQPEQYMREILKRLCVSCKKGVEKRKCYELKPEFQ 234
           T+QP+ +++ IL+++C+  K+G      YELKPEF+
Sbjct: 199 TEQPKNHLKTILEKVCILNKRG-PYHHLYELKPEFR 231

[Close]

BLAST of Sed0025072 vs. ExPASy TrEMBL
Match: A0A6J1BZ89 (Transcription initiation factor IIF subunit beta OS=Momordica charantia OX=3673 GN=LOC111006053 PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 1.4e-59
Identity = 154/275 (56.00%), Postives = 175/275 (63.64%), Query Frame = 0


Query: 1   MAVHDKSIDRCSSRKLQSDNN--IAVGTNFLETNKADTEMRLFKSPQPVSGAF------- 60
           M V DK IDRCSSRKLQ++NN     GT+FLETNKAD  M L K PQ V+ A        
Sbjct: 1   MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGP 60

Query: 61  ------LIPRVTLL------------FTMELTGSDSEYAFSAYSLNMSTYFYPMSVFSDS 120
                 +I  V  L            FTMEL G+DS  +  +YSLNMST F PMSVFS+S
Sbjct: 61  SRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVFSES 120

Query: 121 TQGKVTVEGKILKKFDMKP--QNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMP 180
             GK TVEGKIL KFDMKP  QN  RYGKL RER  K  T+ R+ +VIDHV   HM PMP
Sbjct: 121 PPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMP 180

Query: 181 RMDV------RKKKATRRRS--RRVRKDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQ 238
            MDV       KKK   + S  +R+RK+ GELE IIFRLFE QPYWT KQLIQ TDQPEQ
Sbjct: 181 GMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQ 240

[Close]

BLAST of Sed0025072 vs. ExPASy TrEMBL
Match: A0A1S3CPB8 (Transcription initiation factor IIF subunit beta OS=Cucumis melo OX=3656 GN=LOC103503304 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 2.0e-58
Identity = 151/273 (55.31%), Postives = 175/273 (64.10%), Query Frame = 0


Query: 1   MAVHDKSIDRCSSRKLQ-SDNNIAVGTNFLETNKADTEMRLFKSPQPVSGAF-------- 60
           M V  KSIDR +SRK Q ++NNI VGT+FLETNKAD  M L K PQ V+ A         
Sbjct: 1   MDVDGKSIDRSTSRKHQTNNNNIVVGTDFLETNKADRAMWLLKCPQVVTRALSNSPDAPS 60

Query: 61  -----LIPRVTLL------------FTMELTGSDSEYAFSAYSLNMSTYFYPMSVFSDST 120
                +I  V  L            FTMEL  +DS  A  +Y+LNMST F PMSVFS+S+
Sbjct: 61  RPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALRSYTLNMSTDFIPMSVFSESS 120

Query: 121 QGKVTVEGKILKKFDMKP--QNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMPR 180
           QGK TVEGKIL KFDMKP  QN  RYGKL RER  K  T+ R+ +VIDHV   HM PMP 
Sbjct: 121 QGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPG 180

Query: 181 MDV------RKKKATRRRS--RRVRKDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQY 238
           MDV       KKK   + S  +R+RK+ GELE IIF+LFE QPYWT KQLIQ TDQPEQY
Sbjct: 181 MDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFKLFERQPYWTSKQLIQETDQPEQY 240

[Close]

BLAST of Sed0025072 vs. ExPASy TrEMBL
Match: A0A6J1HK34 (Transcription initiation factor IIF subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111464830 PE=3 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 1.3e-57
Identity = 149/264 (56.44%), Postives = 168/264 (63.64%), Query Frame = 0


Query: 5   DKSIDRCSSRKLQSDNNIAVGTNFLETNKADTEMRLFKSPQPVSGAF------------- 64
           DK IDR SSRKL S+++ A GT+FLETNKAD  M L K PQ V+ A              
Sbjct: 5   DKPIDRGSSRKLHSNSSTAAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAK 64

Query: 65  LIPRVTLL------------FTMELTGSDSEYAFSAYSLNMSTYFYPMSVFSDSTQGKVT 124
           +I  V  L            FTMEL  +DS  A  AYSLNMST F PMSVFS+S QGK T
Sbjct: 65  VIVSVDPLQSNDDDDSSSTEFTMELADTDSGKALRAYSLNMSTDFIPMSVFSESAQGKFT 124

Query: 125 VEGKILKKFDMKP--QNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMPRMDV-- 184
           VEGKIL KFDMKP  QN   YGKL RER  K  T+ R+ +VIDHV   HM PMP MDV  
Sbjct: 125 VEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLS 184

Query: 185 ----RKKKATRRRS--RRVRKDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQYMREIL 234
                KKK   + S  +R+RK+ GELE IIFRLFE QPYWT KQLIQ TDQPEQYM+EIL
Sbjct: 185 FGAAEKKKVVSKGSENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEIL 244

[Close]

BLAST of Sed0025072 vs. ExPASy TrEMBL
Match: A0A6J1JIQ3 (Transcription initiation factor IIF subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111487292 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 3.7e-57
Identity = 148/264 (56.06%), Postives = 167/264 (63.26%), Query Frame = 0


Query: 5   DKSIDRCSSRKLQSDNNIAVGTNFLETNKADTEMRLFKSPQPVSGAF------------- 64
           DK IDR SSRKL S+++   GT+FLETNKAD  M L K PQ V+ A              
Sbjct: 5   DKPIDRGSSRKLHSNSSTVAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAK 64

Query: 65  LIPRVTLL------------FTMELTGSDSEYAFSAYSLNMSTYFYPMSVFSDSTQGKVT 124
           +I  V  L            FTMEL  +DS  A  AYSLNMST F PMSVFS+S QGK T
Sbjct: 65  VIVSVDPLQSNDDDDSSSTEFTMELADTDSGKALRAYSLNMSTDFIPMSVFSESAQGKFT 124

Query: 125 VEGKILKKFDMKP--QNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMPRMDV-- 184
           VEGKIL KFDMKP  QN   YGKL RER  K  T+ R+ +VIDHV   HM PMP MDV  
Sbjct: 125 VEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLS 184

Query: 185 ----RKKKATRRRS--RRVRKDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQYMREIL 234
                KKK   + S  +R+RK+ GELE IIFRLFE QPYWT KQLIQ TDQPEQYM+EIL
Sbjct: 185 FGAAEKKKVVSKGSENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEIL 244

[Close]

BLAST of Sed0025072 vs. ExPASy TrEMBL
Match: A0A1S3CPE2 (Transcription initiation factor IIF subunit beta OS=Cucumis melo OX=3656 GN=LOC103503304 PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 1.9e-56
Identity = 151/279 (54.12%), Postives = 175/279 (62.72%), Query Frame = 0


Query: 1   MAVHDKSIDRCSSRKLQ-SDNNIAVGTNFLETNKADTEMRLFKSPQPVSGAF-------- 60
           M V  KSIDR +SRK Q ++NNI VGT+FLETNKAD  M L K PQ V+ A         
Sbjct: 1   MDVDGKSIDRSTSRKHQTNNNNIVVGTDFLETNKADRAMWLLKCPQVVTRALSNSPDAPS 60

Query: 61  -----LIPRVTLL------------FTMELTGSDSEYAFSAYSLNMSTYFYPMSVFSDST 120
                +I  V  L            FTMEL  +DS  A  +Y+LNMST F PMSVFS+S+
Sbjct: 61  RPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALRSYTLNMSTDFIPMSVFSESS 120

Query: 121 Q------GKVTVEGKILKKFDMKP--QNFARYGKLYRERNRKRETERRKTKVIDHVPEEH 180
           Q      GK TVEGKIL KFDMKP  QN  RYGKL RER  K  T+ R+ +VIDHV   H
Sbjct: 121 QDSSFVLGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGH 180

Query: 181 MSPMPRMDV------RKKKATRRRS--RRVRKDSGELESIIFRLFETQPYWTFKQLIQHT 238
           M PMP MDV       KKK   + S  +R+RK+ GELE IIF+LFE QPYWT KQLIQ T
Sbjct: 181 MRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFKLFERQPYWTSKQLIQET 240

[Close]

BLAST of Sed0025072 vs. TAIR 10
Match: AT3G52270.1 (Transcription initiation factor IIF, beta subunit )

HSP 1 Score: 143.3 bits (360), Expect = 2.6e-34
Identity = 85/183 (46.45%), Postives = 116/183 (63.39%), Query Frame = 0


Query: 60  FTMELTGSDSEYAFSAYSLNMSTYFYPMSVFSDSTQGKVTVEGKILKKFDMKP--QNFAR 119
           F MEL  +DS      Y+L+MS  F PM+VF +S+ GK++VEGKI  KFDM+P  +N   
Sbjct: 83  FVMELARADSGNMPRRYTLDMSKDFIPMNVFCESSDGKMSVEGKIKNKFDMRPHNENIES 142

Query: 120 YGKLYRERNRKRETERRKTKVIDHVPEEHMSPMPRMDV-----RKKKATRRRS--RRVRK 179
           YG+L RER  K   + R+ +VID+    HM PMP M +      KKK T R S  +R R+
Sbjct: 143 YGRLCRERTNKYMGKNRQIQVIDNARGMHMRPMPGMIIPTAAPEKKKLTNRTSEMKRTRR 202

Query: 180 DSGELESIIFRLFETQPYWTFKQLIQHTDQPEQYMREILKRLCVSCKKGVEKRKCYELKP 234
           D  E+E ++F LFE Q  WT + LIQ TDQPEQ+++++LK LC+   KG   +  YELKP
Sbjct: 203 DRREMEEVMFNLFERQSNWTLRLLIQETDQPEQFLKDLLKDLCIYNNKG-SNQGTYELKP 262

[Close]

BLAST of Sed0025072 vs. TAIR 10
Match: AT1G75510.1 (Transcription initiation factor IIF, beta subunit )

HSP 1 Score: 134.0 bits (336), Expect = 1.6e-31
Identity = 83/190 (43.68%), Postives = 110/190 (57.89%), Query Frame = 0


Query: 60  FTMELTGSDSEYAFSAYSLNMSTYFYPMSVFSDSTQGKVTVEGKILKKFDMKP--QNFAR 119
           F M + G++       Y+LNM T F PM  FSD  QG    EGK+  KFDMKP  +    
Sbjct: 67  FKMYMVGAEYGNMPKCYALNMFTDFVPMGGFSDVNQGCAAAEGKVDHKFDMKPYGETIEE 126

Query: 120 YGKLYRERNRKRETERRKTKVIDHVPEEHMSPMPRM---------DVRKKKATRRRS-RR 179
           Y +L RER  K   + R+ +VID+    HM PMP M         + RK    ++   +R
Sbjct: 127 YARLCRERTSKAMVKNRQIQVIDNDRGVHMRPMPGMLGLVSSNSKEKRKPPPVKQTEVKR 186

Query: 180 VRKDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQYMREILKRLCVSCKKGVEKRKCYE 238
            R+D GELE+I+F+LFE QP WT KQL+Q TDQP Q+++EIL  LCV  K+G   +  YE
Sbjct: 187 TRRDRGELEAIMFKLFEGQPNWTLKQLVQETDQPAQFLKEILNELCVYNKRG-SNQGTYE 246

The following BLAST results are available for this feature:

BLAST of Sed0025072 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889594.1	1.2e-60	56.62	general transcription factor IIF subunit 2-like [Benincasa hispida] >XP_03888959...	[more]
XP_022133483.1	2.8e-59	56.00	general transcription factor IIF subunit 2-like [Momordica charantia]	[more]
XP_004143805.1	3.1e-58	55.31	general transcription factor IIF subunit 2 isoform X3 [Cucumis sativus] >KGN5163...	[more]
XP_008465665.1	4.1e-58	55.31	PREDICTED: general transcription factor IIF subunit 2 isoform X2 [Cucumis melo]	[more]
XP_022964851.1	2.7e-57	56.44	general transcription factor IIF subunit 2-like [Cucurbita moschata]	[more]

BLAST of Sed0025072 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8R0A0	1.3e-09	26.85	General transcription factor IIF subunit 2 OS=Mus musculus OX=10090 GN=Gtf2f2 PE...	[more]
P13984	2.1e-09	26.85	General transcription factor IIF subunit 2 OS=Homo sapiens OX=9606 GN=GTF2F2 PE=...	[more]
Q01750	2.8e-09	26.85	General transcription factor IIF subunit 2 OS=Rattus norvegicus OX=10116 GN=Gtf2...	[more]
Q2T9L9	3.7e-09	26.17	General transcription factor IIF subunit 2 OS=Bos taurus OX=9913 GN=GTF2F2 PE=2 ...	[more]
Q54KT7	9.0e-08	27.56	General transcription factor IIF subunit 2 OS=Dictyostelium discoideum OX=44689 ...	[more]

BLAST of Sed0025072 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BZ89	1.4e-59	56.00	Transcription initiation factor IIF subunit beta OS=Momordica charantia OX=3673 ...	[more]
A0A1S3CPB8	2.0e-58	55.31	Transcription initiation factor IIF subunit beta OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A6J1HK34	1.3e-57	56.44	Transcription initiation factor IIF subunit beta OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1JIQ3	3.7e-57	56.06	Transcription initiation factor IIF subunit beta OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A1S3CPE2	1.9e-56	54.12	Transcription initiation factor IIF subunit beta OS=Cucumis melo OX=3656 GN=LOC1...	[more]

BLAST of Sed0025072 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52270.1	2.6e-34	46.45	Transcription initiation factor IIF, beta subunit	[more]
AT1G75510.1	1.6e-31	43.68	Transcription initiation factor IIF, beta subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040450	TFIIF beta subunit, HTH domain	PFAM	PF02270	TFIIF_beta	coord: 168..233 e-value: 1.2E-16 score: 60.6
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 167..234 e-value: 8.5E-24 score: 85.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..148
None	No IPR available	PANTHER	PTHR10445:SF2	TRANSCRIPTION INITIATION FACTOR IIF, BETA SUBUNIT	coord: 58..233
IPR003196	Transcription initiation factor IIF, beta subunit	PANTHER	PTHR10445	GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2	coord: 58..233
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 168..234

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0025072.1	Sed0025072.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
biological_process	GO:0006366	transcription by RNA polymerase II
cellular_component	GO:0005674	transcription factor TFIIF complex