Sed0025058 (gene) Chayote v1

Overview


Name	Sed0025058
Type	gene
Organism	Sechium edule (Chayote v1)
Description	50S ribosomal protein L18-like
Location	LG11: 32282135 .. 32285246 (-)
RNA-Seq Expression	Sed0025058
Synteny	Sed0025058

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTTAAATATTTCTCGAAATATTGTAAAGAAAATGTTGGTGGTCGTGGATAAGTCCGACTGCACAAAAAATGGCGGAATGAACAACTGAATCCCAACAATGGCGTTCACAGCAATCTCTTCTTCTTCTTCTTGTGTGCGTTCCGTTCTCTCCTCACAGTGGCTATCAACTCCCACAACTCCATCGCCGAAACCCTCGTCTCTCTCGTGGGCTTCTTCGTTTCCGCCCATTACCCTTTCCACTGGCTCCCCTTTCGTCTCTTCCAACCCCGCTCATCCCAAGGTACCATTTCTTGATTCGATTCCCTCTTTATTCCGCTGGATTTATTGTTTGCGTCTTCAATTTTATGATTTATCTGTTCTGGACCTCGAATTTCTTTGCACCAAACGTGGATTTAGTTTTGATGTGAAAAAAAAAAAAAAAAAACTCTGGAATTAGCGGATTTAGAATGGCGAAACAAGTTGCTTTAGAGATTTTAGATTTATTTTTTCTGTTTTTTCTATGATTGGGAGACGTTATGTGAAATTCAAGCTTTGGCAGAATCGCTTGTGGTACTGATTGTAATCTCTCTTTTTTTAAGAAACGGAAATATTTGATTGATTAAGATGAAAGTGTTACAGAGTTAGTGATTATACACTGAGATAATAGGGTAAATGCAAATTTGTATCTCTCGACAAGTTGAACATCCAACTTTAAGTCCTAAGAGAGAAAGGAATGTGTATCCGAGTGATTATTTCATGAATCGGCTACACATTTGAGAGATAGAAAATGTCATTTTTGAGTTCTGCAATAATTAGGGATGGGGGATTCGAAACTATGACTTCTTGGTCATTGGATATGCATGGATGTTGCTGAGCAACTGCTTTTGTTGACCGGAAATAGAAAACATATATTGGGAAATCTCACTCGAAACTGGTATAGAGGAAAAAAGGGGAAGATCAAGACTTATCTCATCTCGACGCTAGATTGTGAGGTGTGTGGAGGAGAACCACAATCGATCACCAATCGGTTGGTGGTCGATTACTAATCTCTTAATCAACTGGAAACGCGAAATCTGAAACCCTAGTGTAAAATTCAGGGAAAGAGAGTTGTTTGTGAGGAAGTTAGTATTTTGTGGTTTTCTTCCGGTCGTGTAATCAAGCCAATTGTCAATACGAACTCGACCATATCGTGAACTTCCTATTATTTGCCGCATGGTAAAGGAAAGTCTTTTTCAGGATATGGTTTGAGATTTTGAAAGAATACTCCCTGTAGTCATCTTTAGGAGAATGGTTTTGCTGTTATTTTGGCTGGAAAAACACAAATGACTGTTATATTGTGTATAGAGTTCTCAACTATTTTTTACTCCTTTCCAAGTTAAATGATCTTATTGCTTTTGTGATACGATCCGGACCTTGGAGTTTTAGGAATATTAGTATTAGTATTTATTATTTATTAGTTAATTGCTATTTTAATTGTATTGGGCTTGGGCCTATTATTAGTCTTTTATTTAATTAGGGTTTAGGGTTATAAATAGGAGATGATAGGTCTTTGTTAATCATTCATTGAATTATCGTCGTTGTACTCTGGACTCTTTGAGAGATTCTCTCGAGAGATTTATCGTAGTTTAATATAATATTGTGGTAGATTCTATCATTGTGCTAATCAATTATCCTGTTCCAAACTCATCATTCTCTACCTTCTACTTAAAAGTGGGCTTGAAATGAAGGACAACATTTCAAATTTTGAAATTTGTTGCAATAAACAGCCTTTGAGTTTCGAAGTCCTAGGTTCGAGATTCACCTGTGGCATTACTTCTTCGATGTCTCCCGGTGCCTGGCCTAGGGACAGACGTGGTTATCCTTGTTTAAAAAAAAAACAGCCTCGAGTCCTTCTTTTGGGACCATTCTTTGCCACGACAGCTAGTCTTATTTGGGTTGAAGGTGTCAAAGCAGTTCGAAAGAGTACTCTAGTTGGTGTTTTGTGGTACCCCCATCCATTTTCTCTCCTTATTGATGTCTTGGAAGAGTTCTCTAAGGAGTTAAGCTAATGTAGTATAGTTCGTTACAGAGCCTTACAAGCTAAGTGATTATGACGTTTTCCTCGAGTGTCCAACTCCTTTTGACATAAGGTTATTGTGAGTATGGACAATGGTTGTTAAACTCGTATGATGCTGTATCGTCCGACATCCGAGTCAAAACGACTTGGAAGAAAAACGATTCAGATCATGTGTTTGACTTATTTCTTATCTTGAATTGTAAGAAACGAAATGAAGGATATCGTGAAACCATCGATAGTTTTCCAACCATTTACTTGCATATGTACTTATTCACCCGTCAATTATTGCCTTATTTTAAAAATATCAAGCCAGTGTATTTTGTTTCGTTGCTTCCATCGGCTAGATTCTGTTTAGAGAAAGACCTACATTACTTAGAGCAAGGCCAGGTAAGCTGCATATAGTTAATAAATTCATGCATTTATTCACTCTCTTAACAGAGCCAAATAAATGTTAATATGCTTTTTTTTTCTTTTGATTAACTACCAGCATGTTTACACTTGCAGGTTTTATTTATACAATCAGCTTGGACAAGAAGGTCACGAGGGGAGGCTGCGAAGCGACCGAACAAGAAATCATGGAAACAACGAACGGATATGTACATGAGGCCATTTTTACTAAACGTTTTCTTTTCAAAGAAGTTTATCCATGCGAAGGTAATGCATAGAGGCACAAGCAAAGTGATATCAGTGGCGACAACAAATGCAAAGGATCTTAGGACCAGTTTACCATCACTTACTGATCACAATGCATGTAGAGTAATAGGGAAGATTATTGCAGAGAGATCGAAGGAAGCGGATGTATACGCAATCTCGTACGAGCCGAGGAAGGATGAAAGAATTGAAGGTAAGCTTGGTATTGTTATTGACACCATTAAGGAGAATGGGATCATGTTTGTACCTTGAGTTTAAATATTGAGAAGAATGAAAAAACTTAAAGCCTCTTATGTTGGCAGTAAAGGATTAGACTTTGAAGCTGTCATTTTTCTGTTTAGCTTGTTTGAAATATCTGAAATCATCCTTTTTTTTTGTTATGACTTCTCTTTCCTCTGAATGATAAGGTTCATTGAACTTCTCG

mRNA sequence

AATTTAAATATTTCTCGAAATATTGTAAAGAAAATGTTGGTGGTCGTGGATAAGTCCGACTGCACAAAAAATGGCGGAATGAACAACTGAATCCCAACAATGGCGTTCACAGCAATCTCTTCTTCTTCTTCTTGTGTGCGTTCCGTTCTCTCCTCACAGTGGCTATCAACTCCCACAACTCCATCGCCGAAACCCTCGTCTCTCTCGTGGGCTTCTTCGTTTCCGCCCATTACCCTTTCCACTGGCTCCCCTTTCGTCTCTTCCAACCCCGCTCATCCCAAGGTTTTATTTATACAATCAGCTTGGACAAGAAGGTCACGAGGGGAGGCTGCGAAGCGACCGAACAAGAAATCATGGAAACAACGAACGGATATGTACATGAGGCCATTTTTACTAAACGTTTTCTTTTCAAAGAAGTTTATCCATGCGAAGGTAATGCATAGAGGCACAAGCAAAGTGATATCAGTGGCGACAACAAATGCAAAGGATCTTAGGACCAGTTTACCATCACTTACTGATCACAATGCATGTAGAGTAATAGGGAAGATTATTGCAGAGAGATCGAAGGAAGCGGATGTATACGCAATCTCGTACGAGCCGAGGAAGGATGAAAGAATTGAAGGTAAGCTTGGTATTGTTATTGACACCATTAAGGAGAATGGGATCATGTTTGTACCTTGAGTTTAAATATTGAGAAGAATGAAAAAACTTAAAGCCTCTTATGTTGGCAGTAAAGGATTAGACTTTGAAGCTGTCATTTTTCTGTTTAGCTTGTTTGAAATATCTGAAATCATCCTTTTTTTTTGTTATGACTTCTCTTTCCTCTGAATGATAAGGTTCATTGAACTTCTCG

Coding sequence (CDS)

ATGGCGTTCACAGCAATCTCTTCTTCTTCTTCTTGTGTGCGTTCCGTTCTCTCCTCACAGTGGCTATCAACTCCCACAACTCCATCGCCGAAACCCTCGTCTCTCTCGTGGGCTTCTTCGTTTCCGCCCATTACCCTTTCCACTGGCTCCCCTTTCGTCTCTTCCAACCCCGCTCATCCCAAGGTTTTATTTATACAATCAGCTTGGACAAGAAGGTCACGAGGGGAGGCTGCGAAGCGACCGAACAAGAAATCATGGAAACAACGAACGGATATGTACATGAGGCCATTTTTACTAAACGTTTTCTTTTCAAAGAAGTTTATCCATGCGAAGGTAATGCATAGAGGCACAAGCAAAGTGATATCAGTGGCGACAACAAATGCAAAGGATCTTAGGACCAGTTTACCATCACTTACTGATCACAATGCATGTAGAGTAATAGGGAAGATTATTGCAGAGAGATCGAAGGAAGCGGATGTATACGCAATCTCGTACGAGCCGAGGAAGGATGAAAGAATTGAAGGTAAGCTTGGTATTGTTATTGACACCATTAAGGAGAATGGGATCATGTTTGTACCTTGA

Protein sequence

MAFTAISSSSSCVRSVLSSQWLSTPTTPSPKPSSLSWASSFPPITLSTGSPFVSSNPAHPKVLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRTSLPSLTDHNACRVIGKIIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGIMFVP

Homology

[Close]

BLAST of Sed0025058 vs. NCBI nr
Match: XP_023521951.1 (uncharacterized protein LOC111785799 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 337.8 bits (865), Expect = 6.1e-89
Identity = 179/196 (91.33%), Postives = 185/196 (94.39%), Query Frame = 0


Query: 1   MAFTAISS---SSSCVRSVLSSQWLSTPTTPSPKPSSLSWASSFPPITLSTGSPFVSSNP 60
           MAFTAISS   SS+ VRS+LSSQ +STPTTPS K SSLSWASSFP I+LS GSPFVSSNP
Sbjct: 1   MAFTAISSSMPSSASVRSILSSQCISTPTTPSQKSSSLSWASSFPSISLSRGSPFVSSNP 60

Query: 61  AHPKVLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGT 120
           AH KVLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGT
Sbjct: 61  AHAKVLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGT 120

Query: 121 SKVISVATTNAKDLRTSLPSLTDHNACRVIGKIIAERSKEADVYAISYEPRKDERIEGKL 180
           SKVISVATTNAKDLR SLPSLTDHNACRVIGK+IAERSKEADVYA+SYEPRKDERIEGKL
Sbjct: 121 SKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKL 180

Query: 181 GIVIDTIKENGIMFVP 194
           GIVIDTIKENGIMFVP
Sbjct: 181 GIVIDTIKENGIMFVP 196

[Close]

BLAST of Sed0025058 vs. NCBI nr
Match: XP_022152485.1 (uncharacterized protein LOC111020202 [Momordica charantia])

HSP 1 Score: 335.9 bits (860), Expect = 2.3e-88
Identity = 176/196 (89.80%), Postives = 183/196 (93.37%), Query Frame = 0


Query: 1   MAFTAISS---SSSCVRSVLSSQWLSTPTTPSPKPSSLSWASSFPPITLSTGSPFVSSNP 60
           MAFTA+SS   S S VRSVLSSQWLS PTTPS KPSSLSW SSFP I++STGS  +SSNP
Sbjct: 7   MAFTAVSSSLPSCSSVRSVLSSQWLSDPTTPSRKPSSLSWVSSFPNISISTGSSSISSNP 66

Query: 61  AHPKVLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGT 120
           AH KVLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGT
Sbjct: 67  AHAKVLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGT 126

Query: 121 SKVISVATTNAKDLRTSLPSLTDHNACRVIGKIIAERSKEADVYAISYEPRKDERIEGKL 180
           SKVISVATTNAKDLR SLPSLTDHNACRVIGK+IAERSKEADVYA+SYEPRKDER+EGKL
Sbjct: 127 SKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERVEGKL 186

Query: 181 GIVIDTIKENGIMFVP 194
           GIVIDTIKENGIMFVP
Sbjct: 187 GIVIDTIKENGIMFVP 202

[Close]

BLAST of Sed0025058 vs. NCBI nr
Match: XP_022963861.1 (uncharacterized protein LOC111464045 [Cucurbita moschata])

HSP 1 Score: 334.3 bits (856), Expect = 6.8e-88
Identity = 177/196 (90.31%), Postives = 184/196 (93.88%), Query Frame = 0


Query: 1   MAFTAISS---SSSCVRSVLSSQWLSTPTTPSPKPSSLSWASSFPPITLSTGSPFVSSNP 60
           MAFTAISS   SS+ VRS+LSSQ +STPTTPS K SSLSWASSFP I+LS GSPFVSSNP
Sbjct: 1   MAFTAISSSMPSSAFVRSILSSQCISTPTTPSQKSSSLSWASSFPSISLSRGSPFVSSNP 60

Query: 61  AHPKVLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGT 120
           AH KVLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKF+HAKVMHRGT
Sbjct: 61  AHAKVLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFMHAKVMHRGT 120

Query: 121 SKVISVATTNAKDLRTSLPSLTDHNACRVIGKIIAERSKEADVYAISYEPRKDERIEGKL 180
           SKVISVATTNAKDLR SLPSLTDHNACRVIGK+IAERSKEADVYA+SYEPRKDERIEGKL
Sbjct: 121 SKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKL 180

Query: 181 GIVIDTIKENGIMFVP 194
           GIVID IKENGIMFVP
Sbjct: 181 GIVIDAIKENGIMFVP 196

[Close]

BLAST of Sed0025058 vs. NCBI nr
Match: XP_022990182.1 (uncharacterized protein LOC111487153 [Cucurbita maxima])

HSP 1 Score: 332.4 bits (851), Expect = 2.6e-87
Identity = 178/196 (90.82%), Postives = 184/196 (93.88%), Query Frame = 0


Query: 1   MAFTAISS---SSSCVRSVLSSQWLSTPTTPSPKPSSLSWASSFPPITLSTGSPFVSSNP 60
           MAFTAISS   SS+ VRS+LSSQ +STPTTP  K SSLSWASSFP I+LS GSPFVSSNP
Sbjct: 1   MAFTAISSSMPSSASVRSILSSQCISTPTTPQ-KSSSLSWASSFPSISLSRGSPFVSSNP 60

Query: 61  AHPKVLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGT 120
           AH KVLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGT
Sbjct: 61  AHAKVLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGT 120

Query: 121 SKVISVATTNAKDLRTSLPSLTDHNACRVIGKIIAERSKEADVYAISYEPRKDERIEGKL 180
           SKVISVATTNAKDLR SLPSLTDHNACRVIGK+IAERSKEADVYA+SYEPRKDERIEGKL
Sbjct: 121 SKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKL 180

Query: 181 GIVIDTIKENGIMFVP 194
           GIVIDTIKENGIMFVP
Sbjct: 181 GIVIDTIKENGIMFVP 195

[Close]

BLAST of Sed0025058 vs. NCBI nr
Match: KAG7033427.1 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 323.6 bits (828), Expect = 1.2e-84
Identity = 174/193 (90.16%), Postives = 181/193 (93.78%), Query Frame = 0


Query: 1   MAFTAISS---SSSCVRSVLSSQWLSTPTTPSPKPSSLSWASSFPPITLSTGSPFVSSNP 60
           MAFTAISS   SS+ VRS+LSSQ +STPTTP  K SSLSWASSFP I+LS GSPFVSSNP
Sbjct: 1   MAFTAISSSMPSSAFVRSILSSQCISTPTTPQ-KSSSLSWASSFPSISLSRGSPFVSSNP 60

Query: 61  AHPKVLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGT 120
           AH KVLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGT
Sbjct: 61  AHAKVLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGT 120

Query: 121 SKVISVATTNAKDLRTSLPSLTDHNACRVIGKIIAERSKEADVYAISYEPRKDERIEGKL 180
           SKVISVATTNAKDLR SLPSLTDHNACRVIGK+IAERSKEADVYA+SYEPRKDERIEGKL
Sbjct: 121 SKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKL 180

Query: 181 GIVIDTIKENGIM 191
           GIVIDTIKENGI+
Sbjct: 181 GIVIDTIKENGII 192

[Close]

BLAST of Sed0025058 vs. ExPASy Swiss-Prot
Match: Q5P316 (50S ribosomal protein L18 OS=Aromatoleum aromaticum (strain EbN1) OX=76114 GN=rplR PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.7e-07
Identity = 38/121 (31.40%), Postives = 67/121 (55.37%), Query Frame = 0


Query: 71  RRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKD 130
           RR+R   AK    KS +           L VF +   I+A+V+    S+V++ A+T   D
Sbjct: 9   RRARKTRAKIAELKSVR-----------LTVFRTNSHIYAQVIDGSGSRVLAAASTVEAD 68

Query: 131 LRTSLPSLTDHNACRVIGKIIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGIM 190
           +R+ LP+  +  A +V+GK+IAER+K A V A++++ R   +  G++  + +  +E G+ 
Sbjct: 69  VRSQLPNGGNKQAAQVVGKLIAERAKAAGVEAVAFD-RAGFQYHGRVKALAEAAREGGLK 117

Query: 191 F 192
           F
Sbjct: 129 F 117

[Close]

BLAST of Sed0025058 vs. ExPASy Swiss-Prot
Match: A9BG02 (50S ribosomal protein L18 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) OX=403833 GN=rplR PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.8e-06
Identity = 34/121 (28.10%), Postives = 65/121 (53.72%), Query Frame = 0


Query: 79  KRPNKKSWKQRTDMYMRPFL--------LNVFFSKKFIHAKVMHRGTSKVISVATTNAKD 138
           K+ +KK+ +Q+  + +R  +        L VF S+K I+A+++       ++ A+T  K 
Sbjct: 3   KQLDKKALRQKRHLRVRKNVRGTSEKPRLTVFKSQKHIYAQIIDDTKGVTLASASTTQKQ 62

Query: 139 LRTSLPSLTDHNACRVIGKIIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGIM 192
           L+  L    D NA + +GK+IAE++KE  +  I ++ R   +  GK+  + +  +E G+ 
Sbjct: 63  LKEKLEKTWDENAAKEVGKLIAEKAKEKGITEIVFD-RSGYKYHGKVKALAEAARETGLK 122

[Close]

BLAST of Sed0025058 vs. ExPASy Swiss-Prot
Match: B7L0T4 (50S ribosomal protein L18 OS=Methylorubrum extorquens (strain CM4 / NCIMB 13688) OX=440085 GN=rplR PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.7e-06
Identity = 29/93 (31.18%), Postives = 53/93 (56.99%), Query Frame = 0


Query: 99  LNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRTSLPSLTDHNACRVIGKIIAERSKEA 158
           L+VF S K I+ +V+     + ++ A++  KDL++SL +  D  A   +GK++AER+K A
Sbjct: 29  LSVFRSSKQIYVQVIDDAAGRTLAAASSLDKDLKSSLKTGADKAAAEAVGKLVAERAKAA 88

Query: 159 DVYAISYEPRKDERIEGKLGIVIDTIKENGIMF 192
            V  + ++ R      G++  + D  +E G+ F
Sbjct: 89  GVTKVVFD-RSGYIFHGRVKALADAAREGGLDF 120

[Close]

BLAST of Sed0025058 vs. ExPASy Swiss-Prot
Match: A9W4S4 (50S ribosomal protein L18 OS=Methylorubrum extorquens (strain PA1) OX=419610 GN=rplR PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.7e-06
Identity = 29/93 (31.18%), Postives = 53/93 (56.99%), Query Frame = 0


Query: 99  LNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRTSLPSLTDHNACRVIGKIIAERSKEA 158
           L+VF S K I+ +V+     + ++ A++  KDL++SL +  D  A   +GK++AER+K A
Sbjct: 29  LSVFRSSKQIYVQVIDDAAGRTLAAASSLDKDLKSSLKTGADKAAAEAVGKLVAERAKAA 88

Query: 159 DVYAISYEPRKDERIEGKLGIVIDTIKENGIMF 192
            V  + ++ R      G++  + D  +E G+ F
Sbjct: 89  GVTKVVFD-RSGYIFHGRVKALADAAREGGLDF 120

[Close]

BLAST of Sed0025058 vs. ExPASy Swiss-Prot
Match: B1Z777 (50S ribosomal protein L18 OS=Methylorubrum populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) OX=441620 GN=rplR PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 8.8e-06
Identity = 29/93 (31.18%), Postives = 52/93 (55.91%), Query Frame = 0


Query: 99  LNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRTSLPSLTDHNACRVIGKIIAERSKEA 158
           L+VF S K I+ +V+     + ++ A++  KDL+ SL +  D  A   +GK++AER+K A
Sbjct: 29  LSVFRSSKQIYVQVIDDAVGRTLAAASSLDKDLKASLKTGADKAAAEAVGKLVAERAKAA 88

Query: 159 DVYAISYEPRKDERIEGKLGIVIDTIKENGIMF 192
            V  + ++ R      G++  + D  +E G+ F
Sbjct: 89  GVTKVVFD-RSGYIFHGRVKALADAAREGGLDF 120

[Close]

BLAST of Sed0025058 vs. ExPASy TrEMBL
Match: A0A6J1DE20 (uncharacterized protein LOC111020202 OS=Momordica charantia OX=3673 GN=LOC111020202 PE=4 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 1.1e-88
Identity = 176/196 (89.80%), Postives = 183/196 (93.37%), Query Frame = 0


Query: 1   MAFTAISS---SSSCVRSVLSSQWLSTPTTPSPKPSSLSWASSFPPITLSTGSPFVSSNP 60
           MAFTA+SS   S S VRSVLSSQWLS PTTPS KPSSLSW SSFP I++STGS  +SSNP
Sbjct: 7   MAFTAVSSSLPSCSSVRSVLSSQWLSDPTTPSRKPSSLSWVSSFPNISISTGSSSISSNP 66

Query: 61  AHPKVLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGT 120
           AH KVLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGT
Sbjct: 67  AHAKVLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGT 126

Query: 121 SKVISVATTNAKDLRTSLPSLTDHNACRVIGKIIAERSKEADVYAISYEPRKDERIEGKL 180
           SKVISVATTNAKDLR SLPSLTDHNACRVIGK+IAERSKEADVYA+SYEPRKDER+EGKL
Sbjct: 127 SKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERVEGKL 186

Query: 181 GIVIDTIKENGIMFVP 194
           GIVIDTIKENGIMFVP
Sbjct: 187 GIVIDTIKENGIMFVP 202

[Close]

BLAST of Sed0025058 vs. ExPASy TrEMBL
Match: A0A6J1HH86 (uncharacterized protein LOC111464045 OS=Cucurbita moschata OX=3662 GN=LOC111464045 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 3.3e-88
Identity = 177/196 (90.31%), Postives = 184/196 (93.88%), Query Frame = 0


Query: 1   MAFTAISS---SSSCVRSVLSSQWLSTPTTPSPKPSSLSWASSFPPITLSTGSPFVSSNP 60
           MAFTAISS   SS+ VRS+LSSQ +STPTTPS K SSLSWASSFP I+LS GSPFVSSNP
Sbjct: 1   MAFTAISSSMPSSAFVRSILSSQCISTPTTPSQKSSSLSWASSFPSISLSRGSPFVSSNP 60

Query: 61  AHPKVLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGT 120
           AH KVLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKF+HAKVMHRGT
Sbjct: 61  AHAKVLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFMHAKVMHRGT 120

Query: 121 SKVISVATTNAKDLRTSLPSLTDHNACRVIGKIIAERSKEADVYAISYEPRKDERIEGKL 180
           SKVISVATTNAKDLR SLPSLTDHNACRVIGK+IAERSKEADVYA+SYEPRKDERIEGKL
Sbjct: 121 SKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKL 180

Query: 181 GIVIDTIKENGIMFVP 194
           GIVID IKENGIMFVP
Sbjct: 181 GIVIDAIKENGIMFVP 196

[Close]

BLAST of Sed0025058 vs. ExPASy TrEMBL
Match: A0A6J1JHY7 (uncharacterized protein LOC111487153 OS=Cucurbita maxima OX=3661 GN=LOC111487153 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 1.2e-87
Identity = 178/196 (90.82%), Postives = 184/196 (93.88%), Query Frame = 0


Query: 1   MAFTAISS---SSSCVRSVLSSQWLSTPTTPSPKPSSLSWASSFPPITLSTGSPFVSSNP 60
           MAFTAISS   SS+ VRS+LSSQ +STPTTP  K SSLSWASSFP I+LS GSPFVSSNP
Sbjct: 1   MAFTAISSSMPSSASVRSILSSQCISTPTTPQ-KSSSLSWASSFPSISLSRGSPFVSSNP 60

Query: 61  AHPKVLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGT 120
           AH KVLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGT
Sbjct: 61  AHAKVLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGT 120

Query: 121 SKVISVATTNAKDLRTSLPSLTDHNACRVIGKIIAERSKEADVYAISYEPRKDERIEGKL 180
           SKVISVATTNAKDLR SLPSLTDHNACRVIGK+IAERSKEADVYA+SYEPRKDERIEGKL
Sbjct: 121 SKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKL 180

Query: 181 GIVIDTIKENGIMFVP 194
           GIVIDTIKENGIMFVP
Sbjct: 181 GIVIDTIKENGIMFVP 195

[Close]

BLAST of Sed0025058 vs. ExPASy TrEMBL
Match: A0A6J1JY30 (uncharacterized protein LOC111489327 OS=Cucurbita maxima OX=3661 GN=LOC111489327 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 4.6e-82
Identity = 169/196 (86.22%), Postives = 176/196 (89.80%), Query Frame = 0


Query: 1   MAFTAISS---SSSCVRSVLSSQWLSTPTTPSPKPSSLSWASSFPPITLSTGSPFVSSNP 60
           MAF AISS   S S V SVLS QW STPT  S K SSLSWASSFP +T+S GS  VSSNP
Sbjct: 1   MAFIAISSSLPSCSSVPSVLSFQWPSTPTILSQKSSSLSWASSFPHVTISRGSHVVSSNP 60

Query: 61  AHPKVLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGT 120
           AH KVLFI+SAWTRRSR EAAKRPNKKSWKQRTDMYMRPFLL+VFFSKKF+HAKVMHRGT
Sbjct: 61  AHDKVLFIRSAWTRRSREEAAKRPNKKSWKQRTDMYMRPFLLDVFFSKKFVHAKVMHRGT 120

Query: 121 SKVISVATTNAKDLRTSLPSLTDHNACRVIGKIIAERSKEADVYAISYEPRKDERIEGKL 180
           SKVISVATTNAKDLR SLPSLTDHNACRVIGK+IAERSKEADVYA+SYEPRKDERIEGKL
Sbjct: 121 SKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKL 180

Query: 181 GIVIDTIKENGIMFVP 194
           GIVIDTIKENGIMFVP
Sbjct: 181 GIVIDTIKENGIMFVP 196

[Close]

BLAST of Sed0025058 vs. ExPASy TrEMBL
Match: A0A6J1FFK7 (uncharacterized protein LOC111445279 OS=Cucurbita moschata OX=3662 GN=LOC111445279 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 3.9e-81
Identity = 167/198 (84.34%), Postives = 177/198 (89.39%), Query Frame = 0


Query: 1   MAFTAI-----SSSSSCVRSVLSSQWLSTPTTPSPKPSSLSWASSFPPITLSTGSPFVSS 60
           MAFTAI     SSSSS V SV+S Q  S+P   S K SSLSWASSFP +T+S GSP VSS
Sbjct: 1   MAFTAISSSLQSSSSSSVPSVISFQCPSSPAILSQKSSSLSWASSFPHVTISRGSPVVSS 60

Query: 61  NPAHPKVLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHR 120
           NPAH KVLFIQSAWTRRSR EAAKRPNKKSWKQRTDMYM+PFLL+VFFSKKF+HAKVMHR
Sbjct: 61  NPAHDKVLFIQSAWTRRSREEAAKRPNKKSWKQRTDMYMKPFLLDVFFSKKFVHAKVMHR 120

Query: 121 GTSKVISVATTNAKDLRTSLPSLTDHNACRVIGKIIAERSKEADVYAISYEPRKDERIEG 180
           GTSKVISVATTNAKDLR SLPSLTDHNACRVIGK+IAERSKEADVYA+SYEPRKDERI+G
Sbjct: 121 GTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIDG 180

Query: 181 KLGIVIDTIKENGIMFVP 194
           KLGIVIDTIKENGIMFVP
Sbjct: 181 KLGIVIDTIKENGIMFVP 198

[Close]

BLAST of Sed0025058 vs. TAIR 10
Match: AT3G20230.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 247.3 bits (630), Expect = 1.0e-65
Identity = 124/161 (77.02%), Postives = 144/161 (89.44%), Query Frame = 0


Query: 33  SSLSWASSFPPITLSTGSPFVSSNPAHPKVLFIQSAWTRRSRGEAAKRPNKKSWKQRTDM 92
           S++SW SSFP +++  GS  V S+P   K  F+Q+AWTRRSRGEAAKRPN+KSWKQRTDM
Sbjct: 29  SAVSWQSSFPKLSIEIGS--VISSPIVKKDSFVQAAWTRRSRGEAAKRPNRKSWKQRTDM 88

Query: 93  YMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRTSLPSLTDHNACRVIGKIIA 152
           YMRPFLLNVFFS+KFIHAKVMHR TSKVISVATTNA+D+RT++PSL D+ ACR+IGK+IA
Sbjct: 89  YMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIRTNIPSLVDNEACRLIGKLIA 148

Query: 153 ERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGIMFVP 194
           ERS EADVYA+SYEPRK ERIEGKLGIVIDTIKE+GI+FVP
Sbjct: 149 ERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGIIFVP 187

[Close]

BLAST of Sed0025058 vs. TAIR 10
Match: AT1G08845.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 108.6 bits (270), Expect = 5.6e-24
Identity = 55/113 (48.67%), Postives = 79/113 (69.91%), Query Frame = 0


Query: 78  AKRPNKK-SWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRTSLP 137
           +K P+K  S+KQRT  YM PF L+VF SK+F+ A + HR T + ++VA TN+KD++  L 
Sbjct: 70  SKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLR 129

Query: 138 SLTDHNACRVIGKIIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGI 190
           S  D  AC  IG+I++ER+KEADVY  SY PR  ++ EGK+  V+ ++ +NGI
Sbjct: 130 SRCDIPACMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 182

[Close]

BLAST of Sed0025058 vs. TAIR 10
Match: AT1G08845.2 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 108.6 bits (270), Expect = 5.6e-24
Identity = 55/113 (48.67%), Postives = 79/113 (69.91%), Query Frame = 0


Query: 78  AKRPNKK-SWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRTSLP 137
           +K P+K  S+KQRT  YM PF L+VF SK+F+ A + HR T + ++VA TN+KD++  L 
Sbjct: 115 SKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLR 174

Query: 138 SLTDHNACRVIGKIIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGI 190
           S  D  AC  IG+I++ER+KEADVY  SY PR  ++ EGK+  V+ ++ +NGI
Sbjct: 175 SRCDIPACMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 227

[Close]

BLAST of Sed0025058 vs. TAIR 10
Match: AT3G22450.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 88.2 bits (217), Expect = 7.9e-18
Identity = 43/111 (38.74%), Postives = 73/111 (65.77%), Query Frame = 0


Query: 79  KRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRTSLPSL 138
           KR    ++ Q T  +  PF L+++ SK+ + A V+HR TSKV++VA + +KD++  L S 
Sbjct: 180 KRERTFTFNQLTAPFHYPFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFDLGSR 239

Query: 139 TDHNACRVIGKIIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGI 190
            +  AC  +G ++A+RS E D++ + Y PRK ++IEGKL +V+  + +NG+
Sbjct: 240 RNVAACAAVGAVLAQRSLEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGV 290

[Close]

BLAST of Sed0025058 vs. TAIR 10
Match: AT5G27820.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-13
Identity = 35/97 (36.08%), Postives = 62/97 (63.92%), Query Frame = 0


Query: 93  YMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRTSLPSLTDHNACRVIGKIIA 152
           Y++P++L + F+ KF+HA+V+H  T+ V   A++  K LR ++    D  A   IGKI+ 
Sbjct: 15  YLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDITRDVAAASKIGKILG 74

Query: 153 ERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGI 190
           ER    D+ A++ + +K++R  GK+  VID+++E G+
Sbjct: 75  ERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGV 111

The following BLAST results are available for this feature:

BLAST of Sed0025058 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023521951.1	6.1e-89	91.33	uncharacterized protein LOC111785799 [Cucurbita pepo subsp. pepo]	[more]
XP_022152485.1	2.3e-88	89.80	uncharacterized protein LOC111020202 [Momordica charantia]	[more]
XP_022963861.1	6.8e-88	90.31	uncharacterized protein LOC111464045 [Cucurbita moschata]	[more]
XP_022990182.1	2.6e-87	90.82	uncharacterized protein LOC111487153 [Cucurbita maxima]	[more]
KAG7033427.1	1.2e-84	90.16	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Cucurbita argyrosperma ...	[more]

BLAST of Sed0025058 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5P316	4.7e-07	31.40	50S ribosomal protein L18 OS=Aromatoleum aromaticum (strain EbN1) OX=76114 GN=rp...	[more]
A9BG02	1.8e-06	28.10	50S ribosomal protein L18 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) OX=4038...	[more]
B7L0T4	6.7e-06	31.18	50S ribosomal protein L18 OS=Methylorubrum extorquens (strain CM4 / NCIMB 13688)...	[more]
A9W4S4	6.7e-06	31.18	50S ribosomal protein L18 OS=Methylorubrum extorquens (strain PA1) OX=419610 GN=...	[more]
B1Z777	8.8e-06	31.18	50S ribosomal protein L18 OS=Methylorubrum populi (strain ATCC BAA-705 / NCIMB 1...	[more]

BLAST of Sed0025058 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DE20	1.1e-88	89.80	uncharacterized protein LOC111020202 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1HH86	3.3e-88	90.31	uncharacterized protein LOC111464045 OS=Cucurbita moschata OX=3662 GN=LOC1114640...	[more]
A0A6J1JHY7	1.2e-87	90.82	uncharacterized protein LOC111487153 OS=Cucurbita maxima OX=3661 GN=LOC111487153...	[more]
A0A6J1JY30	4.6e-82	86.22	uncharacterized protein LOC111489327 OS=Cucurbita maxima OX=3661 GN=LOC111489327...	[more]
A0A6J1FFK7	3.9e-81	84.34	uncharacterized protein LOC111445279 OS=Cucurbita moschata OX=3662 GN=LOC1114452...	[more]

BLAST of Sed0025058 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20230.1	1.0e-65	77.02	Ribosomal L18p/L5e family protein	[more]
AT1G08845.1	5.6e-24	48.67	Ribosomal L18p/L5e family protein	[more]
AT1G08845.2	5.6e-24	48.67	Ribosomal L18p/L5e family protein	[more]
AT3G22450.1	7.9e-18	38.74	Ribosomal L18p/L5e family protein	[more]
AT5G27820.1	1.2e-13	36.08	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 90..191 e-value: 9.5E-10 score: 38.8
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 4..191
IPR036967	Ribosomal protein S11 superfamily	GENE3D	3.30.420.80	Ribosomal protein S11	coord: 51..192 e-value: 4.0E-16 score: 61.2
None	No IPR available	PANTHER	PTHR12899:SF16	OS02G0689700 PROTEIN	coord: 4..191
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 86..189 e-value: 4.09204E-18 score: 73.7283
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 93..189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0025058.1	Sed0025058.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome