Sed0024946 (gene) Chayote v1

Overview
NameSed0024946
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG13: 1531235 .. 1535989 (-)
RNA-Seq ExpressionSed0024946
SyntenySed0024946
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCCCCCAATTATATGTCTATTGGTTTAGTTAATAAATACCCATCAAAGCCTTTCTAGTTCCACATATAACTTTTGAGCTTTCTACAATCACAAGCAAATGGCTTCACCAACAGCTTTGGTTGCTTGGAACAAAGCTATCTTCTTCGCTTTTTTTCTTCTTGCTTTCACCATTTCTGCTCGGGAACTTGTTGGCACCAATGTCGTGGTTCGCATGACTCGTAAGTACTCTTGTGATCAGTTCTTTCCATGCATCTTATTAAGAATGTGAGGCGTCTTCATCTTTTTAACATGAAATATCCTCTAGAACTTCTAAAATATCGTTTTTACTTTTATTTTTTGTTTCAATAGGCGAGATGGCAATGAAAACTAATGATGCGATGGGCAGACGATTAGTTGCTCGACAATTGGATTTTCCTTGGAAAGGAGGTTATTCTCGTCCTCCTCCTCCTTCTCTACGTTTCTCTTAATAAAGGGAAAGATCTTGAAATTCTGTGTATTTAATCTTTAGATATAACTTTTTTGTGATTTCGAGTTTGGATAATAAGGATCTTGTTGATTGATATAATTAAATTTACCTCAATCTATTAGTTTAGACTTTTGGATTGATTGGTGGTTTAACATAATTCAACAGATTTTTGTATGAATGTTTTTTTTTTGTAAGGTTGTGCGATTATGTTTGGAGTTAATTATCACTACTACAATTTTAGCCTTCCATGACAGTTATTTCAATCCAGAAATTTTAAAAAATCTAAAAACTGTCATAAAAAATCTAAAAACATCGTATTTGTGAAGAATAGATGAATTTTAAGTTATTGAAGTTTTTATGACAGTTATTGATATTTAGATAATTGTCATAAAATAATTATAATGGCATTTTAATAATTGTCATAGAAATTTTTACTTTTTGACAAGAATATCTCATTTTTTCATAAGATTATGACAATTTAAAAATTGTCATAGAAAATAAATACTTGTAAGTTTTAAAATTTTACTTTATTTTATTTTTCATCTAGGTTATTGATTTTTTTTAATTAAAATAAAATATAAAATCAAATAAAAGAAAAGAAAAGAAAAATGAGTTTTTAAATTGAAAAAAAATTTACACTTTTTTTTGCCTTAATATTATTATTTGGTAGGGCCATCATACAATAAAAATAAATTACCTTGCTTTTCATTTAAATCATTTAAAATACAATGGTGAAACTAAAAAATTGTAGGAATATTTTTTGTAGAATAAATTTATGGTTCCTTAATGTAACAAAAAAATTCAATTAAACACAAAAAATAAAAATTCAAAAAAATGGTCATAAAAACAAAAGATTTGTATTTTAAAATTGAGAAAATTGATAAAATTGGGAGAAAAATAAATAGGTGTAAAAGGTTGTTTTGAGAAAAAAAGAAAAGAGGGGCAATTTGTGAAGTTTAAGGAAAAGAGAGAGAGAAAGAAGAGAGAGAGAGCAAGGTGCTCTCTCTCCCTTTGGTTTTCACGCCTGAGAGAGAACCCCCACGGTGGGGTTCTGTTTTCCGCGGCCAAATCGATCGCCAAAGTGAGGCGATCTCCTTTTCTTTCATCGGCGTCCATAGATCCGGCGAGGAGCGCGGATCTCTTCCTCTGCTTTTTCCGCCGTCTTCTTCGACTCATGAGCCGCACTGTGCTTTGATCGCAACTTTCTTTTAAATGCCTATAATCAACTTCATTGTGAAAATGTGTTCTATTTCTCAATTTTGAGGTGAATATTCTCTCATTTGTTTTTGAATTTTTATTTTTCATTTTGCTTTGCATCTTTGTTGCTCATTGTGGAATTTGATTTTCTTTTCCATTGTTTCCTTTTTCAGAGTGAATGTGTGTGATTGGGGTGAATCTTTCAATTTTCTACCCTAGTTTATTTTACTCTCTTGCTTGTTGCTAACTTTCTTTTAAATGTTGTCTAAAAAGACTTTCTCTTAAATGTTCTTTGTCCAAATCGTTTATTTAATTGTTGTTTAAAGTATAAGTAAAAAGTGTTCTTTATTCTTTAAATCACTTGAATGGTGTTAATATACACATGTACTAGAGTATAATATAACTTGAAAGGAGATATATAGCTACCTTATGGCGGTTTCTCCTATATGTGTGCCCGACATTTGACTTCAAAAGTGAAATAGCTACCTTTGTCCTATATGTGTCGAGGCTTGTTTGTTGTTGTTTGCGAGTCCCGAGGTGTTTGGGCTAGTCGTTTGGGAGTTCGGTTGTGATTTGGGTTTTGGGCAAAGTGTTGGTTGGTTGTGTGTTTCCTTTGGGATTCGAGCCCGGGCCCTTGGTGTTGATTTGGGAGTTGGATTTAAGTGAGTTTTATTTATTGGGAGAGGTTGCTTCGGTCGGGTCTCGAAGGAGGAAGCCGGGAAATGGGATTTTAAGGTTTTAATTTGGATAAGGATGGAAATTAGGATTAAAATCCCTATTTTCCTTTATTTTTTCCCATTTTTCCCTTTTCTTTTCAAAATACCTTTCTCTCTCTCTCTCTCTCCCCGACCTAGCCCTAGTCAGGCATAGCTAGCCCGCCCAGAGCCCTGCTCGCCCAAGCCTAGCCCCTGCCACGCCAGTCGCGCGCGTCGCCAGTCACACCACCCCAGAGCTCGCTTTGCCAGTCGCGCCATCGCCAATTTCACCGAGTCGCTCGCGCGATGTCGCCCGTGCCCCGCTGTGTCACCAGATCTGTGTCGCCCAGCCCGTGTCGTCCCTATGCCGAGCCGCTCTGAGTCGCATGCCCCTGTAGCTCGCCGTGCCGAGGCGCGCGTCCCTGTAGCGCGATGTGTCGCCAGCGCCCATCCGAGCTCGCGCCCTCGCCTCCCTGCAGCTCGCCCGCGCGTTGGCGTCCGCGCCCGAGCGCCCTGCTCGCCCAGCCGTGCCCCATCGCGCCCCAGTGCCCGTGTCAGCGCGCCCCAACGCCCGTGCCAGCTGTAACGGCCCGGAAATTTCATCCCGGCCTTCCCGGGAGGCCCAGGGGCATTTTGGTAATTTGGTCTGGCCGACAGGGCCAGTTATGTATTTGTTAATTGCCGGAAAAATTATGAGTCGATTTGAATGGGATCGGGAATTTTGGTGAAGACATTTGGGCTTGGAAAAAGGTAAAAATAAATAGGGAATTAAATAGCGCATCAAGTGAGATTCGAGCCAAGGTTGCATAGGAAGCTAGGCAAGAGTCGCTGCCAATCGAGCCACTGAGCGCTCTTGTGCTTCTAAATGCGCCATCGTCTATTTGAACCTGTTCGATGCGAGTTTTGGTTTAAAAGGAAATTTTCGCCCGAAGCTTCTTCCTTCTTCTTCTTCCTCGCGATTTTCCTTCTCCATTTCTCCCCGACCGACCGAGCTTCGTCTTAGCGATTTCTTCCTTCTCCAGTGTGTTCGACCGAGTTCCTTCCTCAAATCCGAAGCCAAATCTCGAGCAGCTGGTGAGTTTCTTCTTCTCTTCTTCTCCTTCGCGTTTCCGTCGACCCTTTCCCCTATTTTTCGAATTCCATTTTCCGGCCGAGTCGAGGTGAATCGCTGGGTGGGTTTTGTGCAGCTGGAGTAGGGGAGTTCGACCAACCACAAATCGCCCGTCGAATCTTCTCCAATCGCTCGAATTCGAGCTCGTTCTTCTCCAATGCCCAGATCTGCCGGCGCCCCACTGCCGCGCCCCGGTAGGACAAAGAAGCAGCCGGATCGCCCGCGATCGCCCGACCCTCCGTCCGTCGCGCCTGGCAGCAGCCCGGATCGCCCAAGGTCGCGGCGGCCTCTCCATCGCGCGCCCGATCGCGGCCGCTCGCGAACCACGACCATCGCGCGCGAGCCCCCGTCGCCGCGACTGTCGTAGCCGTCGCCTCGCGCCGCACGCCCGCGCGCCCGCGTCCGCGCCCAGCGCCCAGCTCTGCCGCCATCTCTGCGCCCAGCGCGCCAATCGCCCCATTCTTTGCCCGTTAAATGTGCAATCGGCTCGTTAAATGTTAAATCGCGCCTCGTGAGTTGCTCCCGAGCTGAGCCCTGTTTATTTTATTATATTTAGGCCTATTGTGTGATTTTTGTTGTGATTGATAGGTTCTCGGTAGCTAGTTCGGGTTTGTTCGCAACTTAGGATTTCGTGTCAAATCGTCCCCGACCAAGGTAAGGATTTCTTACCGGAGTTGTGTGGACCCTGAGATATATTATGCGATTGTTGATTGATTGCTTGTTTGTGTTTATTGACATGTGTAGCTAGGTACTCTATTCTGAATTCCCGATTAGCATGATTTTCCTGGTTATTTCTCATGTTAATCCATGCTAGGTTGATAAAAATTATCTACATGAAATCATTTAGGGACATAGATCAATTGAAAAAGGAAAACCTCAAGCCTCAAGGTAATAGTTTTGGTTTTATTTAACTTATTTATCGTTTAATCTGAAAACTTTATTTATACTTTTATTTATTGATGCAAGTTATGTGTCAGAAGCTCAATCAAGGTGGAGCCTCGTCGAGCTTGGTATGTCTACTTGTTCATTTGTTTAGTTGCCTATGTATCTTGCTTAGAGTATACTATAAATAATTTTAATAGAAATTTTGTATGTGTGGTGGCTAACCTGCAGCAAAGTTGGCCACTAAATGTTGGATTATTCTTGTTGAATATATATATCATGTAGCAAAATTAGTCACTATATTGAACAAACAAGTGTATTATTTTTTTGGATAACTTGTATATATGTCGTTATGCTGCCGAAAATTTTATAATTGGAATTAACTTTCTTTTTTTATGAGGGT

mRNA sequence

ATCCCCCAATTATATGTCTATTGGTTTAGTTAATAAATACCCATCAAAGCCTTTCTAGTTCCACATATAACTTTTGAGCTTTCTACAATCACAAGCAAATGGCTTCACCAACAGCTTTGGTTGCTTGGAACAAAGCTATCTTCTTCGCTTTTTTTCTTCTTGCTTTCACCATTTCTGCTCGGGAACTTGTTGGCACCAATGTCGTGGTTCGCATGACTCGCGAGATGGCAATGAAAACTAATGATGCGATGGGCAGACGATTAGTTGCTCGACAATTGGATTTTCCTTGGAAAGGAGGTTGATAAAAATTATCTACATGAAATCATTTAGGGACATAGATCAATTGAAAAAGGAAAACCTCAAGCCTCAAGGTAATAGTTTTGGTTTTATTTAACTTATTTATCGTTTAATCTGAAAACTTTATTTATACTTTTATTTATTGATGCAAGTTATGTGTCAGAAGCTCAATCAAGGTGGAGCCTCGTCGAGCTTGGTATGTCTACTTGTTCATTTGTTTAGTTGCCTATGTATCTTGCTTAGAGTATACTATAAATAATTTTAATAGAAATTTTGTATGTGTGGTGGCTAACCTGCAGCAAAGTTGGCCACTAAATGTTGGATTATTCTTGTTGAATATATATATCATGTAGCAAAATTAGTCACTATATTGAACAAACAAGTGTATTATTTTTTTGGATAACTTGTATATATGTCGTTATGCTGCCGAAAATTTTATAATTGGAATTAACTTTCTTTTTTTATGAGGGT

Coding sequence (CDS)

ATGGCTTCACCAACAGCTTTGGTTGCTTGGAACAAAGCTATCTTCTTCGCTTTTTTTCTTCTTGCTTTCACCATTTCTGCTCGGGAACTTGTTGGCACCAATGTCGTGGTTCGCATGACTCGCGAGATGGCAATGAAAACTAATGATGCGATGGGCAGACGATTAGTTGCTCGACAATTGGATTTTCCTTGGAAAGGAGGTTGA

Protein sequence

MASPTALVAWNKAIFFAFFLLAFTISARELVGTNVVVRMTREMAMKTNDAMGRRLVARQLDFPWKGG
Homology
[Close]
BLAST of Sed0024946 vs. NCBI nr
Match: KAG6600178.1 (hypothetical protein SDJN03_05411, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.7 bits (195), Expect = 1.0e-11
Identity = 40/66 (60.61%), Postives = 49/66 (74.24%), Query Frame = 0 

Query: 1  MASPTALVAWNKAIFFAFFLLAFTISARELVGTNVVVRMTREMAMKTNDAMGRRLVARQL 60
          MASP+A V W + +FFA  LLAF +SARELVGTN+V R   EM ++TN  +GRRL+ARQL
Sbjct: 1  MASPSAFVPWKEVVFFALLLLAFNVSARELVGTNIVARTVHEMTIETN--VGRRLIARQL 60

Query: 61 DFPWKG 67
          D  W G
Sbjct: 61 DTSWGG 64

[Close]
BLAST of Sed0024946 vs. NCBI nr
Match: KAG7030841.1 (hypothetical protein SDJN02_04878 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 79.7 bits (195), Expect = 1.0e-11
Identity = 40/66 (60.61%), Postives = 49/66 (74.24%), Query Frame = 0 

Query: 1  MASPTALVAWNKAIFFAFFLLAFTISARELVGTNVVVRMTREMAMKTNDAMGRRLVARQL 60
          MASP+A V W + +FFA  LLAF +SARELVGTN+V R   EM ++TN  +GRRL+ARQL
Sbjct: 1  MASPSAFVPWKEVVFFALLLLAFNVSARELVGTNIVARTVHEMTIETN--VGRRLIARQL 60

Query: 61 DFPWKG 67
          D  W G
Sbjct: 61 DTSWGG 64

[Close]
BLAST of Sed0024946 vs. NCBI nr
Match: KAG6576804.1 (hypothetical protein SDJN03_24378, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.9 bits (185), Expect = 1.5e-10
Identity = 40/67 (59.70%), Postives = 46/67 (68.66%), Query Frame = 0 

Query: 1  MASPTALVAWNKAIFFAFFLLAFTISARELVGTNVVVRMTREMAMKTNDAM-GRRLVARQ 60
          MASPTALVAW K  F  F L+A ++SAREL G NVV R  REMA   N  + G RL+ARQ
Sbjct: 1  MASPTALVAWKKVAFLGFLLIAVSVSARELAGANVVTRTAREMATMPNGVIGGSRLIARQ 60

Query: 61 LDFPWKG 67
          LD  W+G
Sbjct: 61 LDTAWRG 67

[Close]
BLAST of Sed0024946 vs. NCBI nr
Match: KAG7014831.1 (hypothetical protein SDJN02_22460, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 75.9 bits (185), Expect = 1.5e-10
Identity = 40/67 (59.70%), Postives = 46/67 (68.66%), Query Frame = 0 

Query: 1  MASPTALVAWNKAIFFAFFLLAFTISARELVGTNVVVRMTREMAMKTNDA-MGRRLVARQ 60
          MASPTALVAW K  F  F L+A ++SAREL G NVV R  REMA   N   +G RL+ARQ
Sbjct: 1  MASPTALVAWKKVAFLGFLLIAVSVSARELAGANVVTRTAREMATMPNGVIVGSRLIARQ 60

Query: 61 LDFPWKG 67
          LD  W+G
Sbjct: 61 LDTAWRG 67

The following BLAST results are available for this feature:
BLAST of Sed0024946 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6600178.11.0e-1160.61hypothetical protein SDJN03_05411, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7030841.11.0e-1160.61hypothetical protein SDJN02_04878 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6576804.11.5e-1059.70hypothetical protein SDJN03_24378, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7014831.11.5e-1059.70hypothetical protein SDJN02_22460, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Sed0024946 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0024946 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0024946 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0024946.1Sed0024946.1mRNA