Sed0024941 (gene) Chayote v1

Overview


Name	Sed0024941
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RNA-binding protein BRN1-like
Location	LG07: 2720160 .. 2727609 (-)
RNA-Seq Expression	Sed0024941
Synteny	Sed0024941

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACAAAAGTAGTTAACACAAATAATAAATACACCAACTTTCACTGCTATAATGGCACTTTAGTAAATAAAACGCAAAACCAAGGTCAATTGCGTTACATATAATTATGTAATTTATTGAAGAGATCCAAATTTGCCATCAAGAATCCCAATTGTTGTAATCCCAGCTAAGACTCTGAGAAGAAAATTCCAATCTTAGAGAGAGAAGCGGCGGCCATTTCTAGAGAGAGAAAGCTCGAAACCGGCGTCAATGGCGGAAGACGAGAGCAGAGGAGAGAGAAAGGGAAGTAGCAGCCAAGAGGAAGAAGACAGCGTCAAGCTCTTCGTCGGTCAAGTTCCGAAGCACATGACCGAAGCTCAACTTCTCGCAATGTTCCAAGAGTTCGCACTCGTGGACGAGGTCAACATCATCAGAGACAAGACCACTCGCGCCTCTAGAGGTCTCTTCTTCTTCTTCTTCTTCGTTGATTTCATCTTCTGGGTTACATTTTCACTCGCATTCTGTTTGCTGCTTCGATTCGTGGTTCGATCGATTTCGAAGAGGATTCTAACCGATTGGCATTGTGAGACATTGCGAATTGATGTGTTGAACGAAGTATGAACCCTAATTTTGGTTTGATTGCGTTTGTTGCTGCGTTTTCAGGTTGTTGTTTTGTGATTTGTCCTTCGAGGGAGGAGGCGGATAAGGCGGTCAATGCTTGCCATAACAAGAACACTTTGCCTGGGGTTAGTGGAATTTGGATGTTTAGTTGTGAATTATTATAGTTTTATTTTTTCTCTCTTCCTCTTTTTTCTCGGTGTTTTTGTTTTTTTGTGTATTTTCTTTTTGTTGTTGATAATTATAATCAATGCAAATGGATCGTTTTGATAGACTTGGCCCTGTGCGTAATCGCTGTTATCGATAACCTTGAAGCTCTAAAAGTATTGGCTCTTTGTTAAAGCTGTTTTTTAGTTTCAGACTTCTGCACATTGTGGTATATCTGAATATTTTAGATTTCAAAATGAACTAATGAGTGCTCAACATTTCTCATGGAGGCTCAGACCCTCTTGCGTTTTTTTTTTTCTTTTAATAATAATATTCTATATTAGTTTTATTTAAGAGAAATTTAAGAGATTAGTCAAATTAAAAAAATAATTATAAATATGGTAACTTAAAAAAAAATTAGCAACCAAAGTCATCGGTATTAATAGTAGTACCGTAATAATTATACATAATATTATATTAATAATGCAAAATATTGTATTAATGAGTTAATAAGAGGAGTAGCTTAGTGACATGCATGGCTAATGACCCAAAGGTCTAGGATTCGAGTCCCACACTCTCTATTGTTGTAATCTAAAAACAAATATATTGTATTAATGAATAATCCATATCTCTTTTATATTGATATTGGGCTCTCCCACTTTCCAATGTGGGACATTTGTGAGATCCTAACATGTCCCCTCAAGATGGTGCTTCTTTTGGGCTCGACCGATACCCGTTTGAGCTTTATGAGCTCTGATACCATATTAGATAATGTGGGGTTCCACCTCAAAACCAATTGGCAATGAGAGGAGTAATCCATATCTCTTTTATATTGATGTTGGAGTCTCCCACTTTCCAATGTGGGACATTTGTGAGATCCTAAAATAATACAATATTAAAATGTATTAATATGTTTTATTGACTATAAATGCAAATACTTTAAAATTTTCCTACATTTGTAATTATTTGTGAGAAGAGCCCATCCACTACTATTTCCCTTTATAATTATGGTTTTACGGAATCAAATTGATACCCTTGTGCATTAGCAATGGGACATGTCCTTGTAATGACAAAAGAAAGCCCCCTTCTAGAGAGTTGATTCTTAGGAAATTAAGCCAAGTATACCCTTCAATGCAGTGGATCAATGGTTTTCTGTTCCCTATGTTTTTTTATCTTAAATTTGGAGCAATGATTTTCTGATGTTATCATTGGGCTTGTGATTGACCTTGTAAAGCTTAGCTGATAGTTGAGGAGAATAACGCAATAAGAATACGTGTTGGTATTCATTTGTGAGGAAGAATATGGGTTTCCACTGAATCCTTGGATAATATATTACAAGTCACCATTTTGGTGAGTTGGTAAGGAAATAATTGTAGAGTTGACTCAGTTTTTAAATTTAATTCGTGTTACTTTTTTTTTATGGTTGTATTACTGATCTAAACATAAGTGAATGTGAAGACAATCTTTTCTATTCTATCTTTCCCTTATCATTGCACTAAATTAAATTTTATTTTAAATCTACCCTAACATTGGTGATTAAATTACATTGGATCAAATCAGGACTGAAATATGGATAGTTAGTTTATAGTCAATGAAACAAACTACTACTATGCTACCTTAAATGGTTTTAAATTTATGTTTCCATTAACTCTGTAATTAAACAATGTTATTGTCAAATTGATTAATGATGCCCCTCCTTTTCTATTATACCCAGGCTTCTAGTCCGTTGCAAGTAAAATATGCTGATGGCGAGCTGGAAAGACTAGGTGTAATATCATGTCATGTTTGTATATTTCATCTTAATGATGGTTCCTTATATTCACCTCCTACATTGCCACTTTCTTAATGATCTTACTATTTTATCTTGCTAAAAGGTTAATTTTTAGTATCTATGGATGCTAATGGTTTATTATTTTTTAAAAGAGCAGAACATAAACTCTTCATTGGAATGCTTCCAAAAAATGTATCTGAAGATGAAGTTTCTGGTCTTTTCTCTCAATATGGAACCATAAAAGATTTGCAAATCCTAAGAGGTTCACAGCAAACTAGTAAAGGTAGTTTTCAGTTTGTTTCAGCTTGATTTTGGTTCAAGTTATGAAAGATATCACACAATCGGTTGTATCTTCACGAATAGCTCCGTATGTTGCTTGAGTTCAGGTTGTGCATTTTTGAAGTATGAGACAAAGGACCAAGCTGTTGCAGCACTTGAGGGAATTAATGGAAAGTACAAAATGGAGGTATATAAATTTTAGTTAATTTTCTATATCTATTGAATCTGTTTATTATTACGCCATGTTATTCTCTCTTATTGTGGTGGGTCAACTACAAGTCACTATGTGAAAGAGTTAGTTTTGGAAATTTTAGCTCACGAACAAGGAATTTAATATGGTCCATGGATGTAGATAGATATGTTTAGCTTTCAAATTTATAGAATATTGATAAAAAGGTCTATACCAAAATCATTGAAATCATAGAATCCCATAATATTGTCCTAATATTATCCATTTTCACATTTTTTTTATATTTTGTGGTCACTTCTAATATTTCCTGACATTTACACAACATTTACGAAAAAAGATATTGCTCACTCTTGTTATGTTGAATCCTTTTATTCTAGGAAAATGGAAATTGTATAGCAGTAATCGTATTAGATTTATAATCTTTCACGCTTAGTTCAGCTACATCTATGAATGAAGAAGGCATTCAACGAGTCTGATTAGGGTATTTAAATTTGTACTCAGAGCATTGCTTCACATAAACTTGCATTAAACATGAATATTCTTGCCTCTCTTCATATCTTTTTCTTTCTCCCGATTGCTTAAGACTGTATTCCTTTCAGTCTTCCTTTGGTTTTATTATTACTAATTATTTTAAATACATTTTGTAATGGATGCATGAAACTAATGGTCACGCTCATACTAGCCATGGAATTTTCTTCAAAAGAAAATCAAATTCATTTTAGTTGTAACCGGTTGCAATTTTTCAGTAAGGATTTGATCAGTCAAATTTGTTGTACTCAACTCAATCGTTGAGCCTTCTTGCACAAGCCGACATCTTTTTAGGGCCGGTAAATTTTAATTATCCTAGCTTTGAGTAAGTACATGATATGATCCAGGATCTAGATTATATAAAAAGGTAAAAGAATACAGGATAAATCAAGATTTGATAGGTCTTGGAACCTCCCCTCTCAAGAGTACTCTCTATGAGCCATACAAGATAATCACTCAATAATTGGATGCCTAAACCCTAGGCTAACATCTCCTATTTATAACAAAACCCTAACTTATTCCCCAAGTAATTGCTAACATACCCCTATATTAATCCCTATTCCTCTAAGGCCCAACCCTATCAGTATGGTAGTTTGTCGTGTTCTTTTCCCCAATGCAAGGATGGAAGAGTATGAATGTACAAATACATGGACATAGGTGCAAAACATAGTGGCATCATGGATCTGATTGTTTCTTTTTTTTTTTCTAAGCAGGGATCCAGTGTCCCTTTGGTTGTTAAATGGGCTGACACAGAGAAGGAAAGGCAAGCTCGAAAGGCTCAGAAAGCTCAATCACATGCATCTAATTTGCTTAATGCAGACTCCCAACATCCTTCACTATTTGGAGCTATGCCACTGGGTTATGCTCCACCATATAATGGCTATGGTTATCAGGTCAGTTTCACAATGGAATTATTGTTGGATTTCTTCAATATGGATGCATGTGCTAGGATTTTTCTCTCTTCTTGCTTTCTCTTATTATTATTGCAGACTGCAGAGAGGTTTGTGTTGTCTTGTTCTTTTGGTTGTCATGAACTTGAAAGAAAGCCATTCACATCTCTTTTAAGTATAAGATTTATCAATGAATGATATCAATCGGATACCTGATCCATCATATTATATCGACTTCCTTTTGAATAGTTTTTATTTTCATGGTCACAATTGAACATTTTTACATTGAAATATGAGGGTAGCTAGCTAATTATAGTCACTACTTTCTATTTGTAGGCTCCTGGAAGTTATGGGCTTATGCAATATCACCTACCTCCAATGCAGAATCAATCTGGTTTCCCCAATATGATACCTCAATTAAACCAAGGAAATGGCATGCGTGGGATCCCACCCGACCTTGGCCCGGGTATGGCTCCTAGGAATTATGGCATGCCTCCGGCAAATTACGTTGGCTCTGCCTATCCTGCAGCTCCGGGTCTTCAACATCCAATGGCATACCATGGAGGAATGATGAGTCCCGGGGTTGTGAGCAGTTCACCTGGCTCAGGGCCATTTACTGGTGGGAGGAATAACTCTCCAACCTCTAGTTTGGGTAAAGGCTCTGGGGGTCAGATTGAAGGTAGTTATGTAATGTTTGTTCTTTTCTGACCTATATTTTTACTAATTGGTTTGAGTTTCTGGGAATTATGGTTCGCTCTTTTTTTCCTCTCTAGGTCCACCTGGTGCTAATCTTTTTATTTATCACATACCTCAAGAATATGGTGATGTGGAGCTTGCTAACTCTTTTCGAGCATTTGGCCGAGTTTTGAGTGCTAAAGTATTTGTCGACAAAACATCTGGAGTTAGCAAATGTTTTGGTGAGCACGGATGATAACCTTGTAGTGGTCGATTTTTTTTTTTTTTTGTTATCTTACACCCACTTTGTGCAAAAATAAATGTTGAAATAAAATGCTGGGAAACTAGCCTGATTAGTCCAATCTAAAAAATAATTACAGATATTTTCACTTTTTTACAAAAGTTAGCAAATATAGTCATTGATATTGATGAGTATTTATTTATACTATCTTGTAATATTGTTTTAATAATACATAATATTGTTTTAAAATAAATCAATGACAATAGATGCAAATACTTTAAAATTTGCGTACATTTGTAATTATTTTGTGAAAAGAGCTCACCAGTACAATTTTCCAAAAATATTTTGACCATTCTCTTCTGTATTTTGTTACCTGGAGACCGAGATATCTAACCTTTTTCCATCTACAGGGTTTGTTAGTTATGATTCGGTCGAGGCTGCTCAATCTGCGATTAGTATGATGAATGGATGTCAATTAGGTGGAAAGAAACTTAAAGTCCAGCTGAAGAGAGATAACAAACAGAGTAAACAATATTGATTTGGAGTAATGTCATCAAAGGCAGCTAAGTTGTCTACCACTTGCTTACATGGGGGGGGCCTTAATGTATGACATTCATTTCAATATCATATCTTAGGATGGATTGGGGACTGTGGTTAAAATCCATTACTCCATCCTGCCTGTGATTGCATCATCAGGTGAAATCAATGATACTTGTAATTCATGGTTCTGTCCATGCTGACACAATTTGTAATCTATGTATCTTGGAAGATTAACATTCTTTAATTGATTCTTCCTGGACATCTGTTGATTGTAAAATGCAGTGTAATTATAAATGATCTCCTGATTCTTTTAGGGTTATTGATTTGATATTGCCTAATTTAATTCTTTTTTCCTTTTGGTTTCTTGTGTGTTTCTGAAAGATTGTCATCTCTTACTTGCAGTATTGGTGTGCAGGTGCATTCAATCCTGCTTCAAGCATATAGTGTTAAACTTAGGAGGGACTAAAATTGGACATACCATCATTAAAATGGTATTTTAAACCTGAATTATCCATGGTGACCGCTTACCTTACAATTAATTTCATGCGGGTTTTTTTTTACATTTAAATGTTGTAGGGTTAGATGGTATGTTATTGACATAGTTGAGGTGTGCGTAAATTAGCCAAGACAGTCATCAATATAAAAAAAACATGGTTTATTATAGGAATACACTTTTTTTTTTGGAACTAAGCTGTTGAAGAACAAGTTTCAAGTGATTTTGGAATAGTCAAAATTACTTTTGTCCAATGCCTCTTTTATATGACAGATTATCAAAATAATCCCAACCAATCTGACATTCCTGTAAATGTTTTGACACAAACAGCTAAAGTTATTTGATTCTGGCCCTGTTTGTAAGAAGATGACTTTTAATTTGTTGGTTAATACACGTGACTTTGCTGCATTTCTGCCAGTGCACGACTTGTACTGTACCTTTAATTTGGCAAGCACAAACGTATGGTTCTGATCAGGTGGTTATTTATTTATTTTCACTTAATCCTCTATTCTGATATTCTTTTGCAGTCTTCCAATGAAGAATGCTGGATATTTGCTTCCCAGGCAACTCATCAGCTGCAACATAATACAGGTAATGTTGTTAATCGGTTAGGACTTTGATTCCTCCAAGAGTATTTTGTTCGTTTAGAAATCACATTTATGAAAATTACGCCCCTAAGAGGTGACATGATAGTCGAAGACTTAGACTTTAAAGATGTGCTTCCCTTAAAATCTCAGATTTGAGACTTACCTATGATATTAATTTGTAGACACTTCTTAAGGTCGTCTCAGGTTCGGAATTCTCCAGTGACATTAACTTGTAGACACTTCTCGTGTCTCTATTCCTACTCTCTCCCGGTGCCTGGCCTAGGGACGGGCGTGGTTAACCCGGGTATAGTAGAGCAAAAATTTGATTTTCCGGTTTAAAAAAAAAACAATTGTCTCCATTTCTTTGATGTTTTCGGGTGCCTGATCTTAGGATAGGTATGGCTACTCATGTTATAGTGGAACGAAGCTGTGATTTCTCGATTTCCAAAAAACATTTGATGACGATTACTATCGTTCTAAGTTATTAGGACTCAATTACTTGGTCTGCTGCTC

mRNA sequence

CACAAAAGTAGTTAACACAAATAATAAATACACCAACTTTCACTGCTATAATGGCACTTTAGTAAATAAAACGCAAAACCAAGGTCAATTGCGTTACATATAATTATGTAATTTATTGAAGAGATCCAAATTTGCCATCAAGAATCCCAATTGTTGTAATCCCAGCTAAGACTCTGAGAAGAAAATTCCAATCTTAGAGAGAGAAGCGGCGGCCATTTCTAGAGAGAGAAAGCTCGAAACCGGCGTCAATGGCGGAAGACGAGAGCAGAGGAGAGAGAAAGGGAAGTAGCAGCCAAGAGGAAGAAGACAGCGTCAAGCTCTTCGTCGGTCAAGTTCCGAAGCACATGACCGAAGCTCAACTTCTCGCAATGTTCCAAGAGTTCGCACTCGTGGACGAGGTCAACATCATCAGAGACAAGACCACTCGCGCCTCTAGAGGTTGTTGTTTTGTGATTTGTCCTTCGAGGGAGGAGGCGGATAAGGCGGTCAATGCTTGCCATAACAAGAACACTTTGCCTGGGGCTTCTAGTCCGTTGCAAGTAAAATATGCTGATGGCGAGCTGGAAAGACTAGAACATAAACTCTTCATTGGAATGCTTCCAAAAAATGTATCTGAAGATGAAGTTTCTGGTCTTTTCTCTCAATATGGAACCATAAAAGATTTGCAAATCCTAAGAGGTTCACAGCAAACTAGTAAAGGTTGTGCATTTTTGAAGTATGAGACAAAGGACCAAGCTGTTGCAGCACTTGAGGGAATTAATGGAAAGTACAAAATGGAGGGATCCAGTGTCCCTTTGGTTGTTAAATGGGCTGACACAGAGAAGGAAAGGCAAGCTCGAAAGGCTCAGAAAGCTCAATCACATGCATCTAATTTGCTTAATGCAGACTCCCAACATCCTTCACTATTTGGAGCTATGCCACTGGGTTATGCTCCACCATATAATGGCTATGGTTATCAGGCTCCTGGAAGTTATGGGCTTATGCAATATCACCTACCTCCAATGCAGAATCAATCTGGTTTCCCCAATATGATACCTCAATTAAACCAAGGAAATGGCATGCGTGGGATCCCACCCGACCTTGGCCCGGGTATGGCTCCTAGGAATTATGGCATGCCTCCGGCAAATTACGTTGGCTCTGCCTATCCTGCAGCTCCGGGTCTTCAACATCCAATGGCATACCATGGAGGAATGATGAGTCCCGGGGTTGTGAGCAGTTCACCTGGCTCAGGGCCATTTACTGGTGGGAGGAATAACTCTCCAACCTCTAGTTTGGGTAAAGGCTCTGGGGGTCAGATTGAAGGTAGTTATGTAATGTTTGTTCTTTTCTGACCTATATTTTTACTAATTGGTTTGAGTTTCTGGGAATTATGGTTCGCTCTTTTTTTCCTCTCTAGGTCCACCTGGTGCTAATCTTTTTATTTATCACATACCTCAAGAATATGGTGATGTGGAGCTTGCTAACTCTTTTCGAGCATTTGGCCGAGTTTTGAGTGCTAAAGTATTTGTCGACAAAACATCTGGAGTTAGCAAATGTTTTGGGTTTGTTAGTTATGATTCGGTCGAGGCTGCTCAATCTGCGATTAGTATGATGAATGGATGTCAATTAGGTGGAAAGAAACTTAAAGTCCAGCTGAAGAGAGATAACAAACAGAGTAAACAATATTGATTTGGAGTAATGTCATCAAAGGCAGCTAAGTTGTCTACCACTTGCTTACATGGGGGGGGCCTTAATGTATGACATTCATTTCAATATCATATCTTAGGATGGATTGGGGACTGTGGTTAAAATCCATTACTCCATCCTGCCTGTGATTGCATCATCAGGTGAAATCAATGATACTTGTAATTCATGGTTCTGTCCATGCTGACACAATTTGTAATCTATGTATCTTGGAAGATTAACATTCTTTAATTGATTCTTCCTGGACATCTGTTGATTGTAAAATGCAGTGTAATTATAAATGATCTCCTGATTCTTTTAGGGTTATTGATTTGATATTGCCTAATTTAATTCTTTTTTCCTTTTGGTTTCTTGTGTGTTTCTGAAAGATTGTCATCTCTTACTTGCAGTATTGGTGTGCAGGTGCATTCAATCCTGCTTCAAGCATATAGTGTTAAACTTAGGAGGGACTAAAATTGGACATACCATCATTAAAATGTCTTCCAATGAAGAATGCTGGATATTTGCTTCCCAGGCAACTCATCAGCTGCAACATAATACAGGTAATGTTGTTAATCGGTTAGGACTTTGATTCCTCCAAGAGTATTTTGTTCGTTTAGAAATCACATTTATGAAAATTACGCCCCTAAGAGGTGACATGATAGTCGAAGACTTAGACTTTAAAGATGTGCTTCCCTTAAAATCTCAGATTTGAGACTTACCTATGATATTAATTTGTAGACACTTCTTAAGGTCGTCTCAGGTTCGGAATTCTCCAGTGACATTAACTTGTAGACACTTCTCGTGTCTCTATTCCTACTCTCTCCCGGTGCCTGGCCTAGGGACGGGCGTGGTTAACCCGGGTATAGTAGAGCAAAAATTTGATTTTCCGGTTTAAAAAAAAAACAATTGTCTCCATTTCTTTGATGTTTTCGGGTGCCTGATCTTAGGATAGGTATGGCTACTCATGTTATAGTGGAACGAAGCTGTGATTTCTCGATTTCCAAAAAACATTTGATGACGATTACTATCGTTCTAAGTTATTAGGACTCAATTACTTGGTCTGCTGCTC

Coding sequence (CDS)

ATGGCGGAAGACGAGAGCAGAGGAGAGAGAAAGGGAAGTAGCAGCCAAGAGGAAGAAGACAGCGTCAAGCTCTTCGTCGGTCAAGTTCCGAAGCACATGACCGAAGCTCAACTTCTCGCAATGTTCCAAGAGTTCGCACTCGTGGACGAGGTCAACATCATCAGAGACAAGACCACTCGCGCCTCTAGAGGTTGTTGTTTTGTGATTTGTCCTTCGAGGGAGGAGGCGGATAAGGCGGTCAATGCTTGCCATAACAAGAACACTTTGCCTGGGGCTTCTAGTCCGTTGCAAGTAAAATATGCTGATGGCGAGCTGGAAAGACTAGAACATAAACTCTTCATTGGAATGCTTCCAAAAAATGTATCTGAAGATGAAGTTTCTGGTCTTTTCTCTCAATATGGAACCATAAAAGATTTGCAAATCCTAAGAGGTTCACAGCAAACTAGTAAAGGTTGTGCATTTTTGAAGTATGAGACAAAGGACCAAGCTGTTGCAGCACTTGAGGGAATTAATGGAAAGTACAAAATGGAGGGATCCAGTGTCCCTTTGGTTGTTAAATGGGCTGACACAGAGAAGGAAAGGCAAGCTCGAAAGGCTCAGAAAGCTCAATCACATGCATCTAATTTGCTTAATGCAGACTCCCAACATCCTTCACTATTTGGAGCTATGCCACTGGGTTATGCTCCACCATATAATGGCTATGGTTATCAGGCTCCTGGAAGTTATGGGCTTATGCAATATCACCTACCTCCAATGCAGAATCAATCTGGTTTCCCCAATATGATACCTCAATTAAACCAAGGAAATGGCATGCGTGGGATCCCACCCGACCTTGGCCCGGGTATGGCTCCTAGGAATTATGGCATGCCTCCGGCAAATTACGTTGGCTCTGCCTATCCTGCAGCTCCGGGTCTTCAACATCCAATGGCATACCATGGAGGAATGATGAGTCCCGGGGTTGTGAGCAGTTCACCTGGCTCAGGGCCATTTACTGGTGGGAGGAATAACTCTCCAACCTCTAGTTTGGGTAAAGGCTCTGGGGGTCAGATTGAAGGTAGTTATGTAATGTTTGTTCTTTTCTGA

Protein sequence

MAEDESRGERKGSSSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKTTRASRGCCFVICPSREEADKAVNACHNKNTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEGINGKYKMEGSSVPLVVKWADTEKERQARKAQKAQSHASNLLNADSQHPSLFGAMPLGYAPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQGNGMRGIPPDLGPGMAPRNYGMPPANYVGSAYPAAPGLQHPMAYHGGMMSPGVVSSSPGSGPFTGGRNNSPTSSLGKGSGGQIEGSYVMFVLF

Homology

[Close]

BLAST of Sed0024941 vs. NCBI nr
Match: XP_038900154.1 (RNA-binding protein BRN1 [Benincasa hispida])

HSP 1 Score: 643.7 bits (1659), Expect = 9.7e-181
Identity = 329/352 (93.47%), Postives = 334/352 (94.89%), Query Frame = 0


Query: 1   MAEDESRGERKGSSSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKTTR 60
           MAE  SRGERK  S+QEEEDSVKLFVGQVPK MTEAQLLAMFQEFALVDEVNIIRDKTTR
Sbjct: 1   MAEG-SRGERK-ESNQEEEDSVKLFVGQVPKLMTEAQLLAMFQEFALVDEVNIIRDKTTR 60

Query: 61  ASRGCCFVICPSREEADKAVNACHNKNTLPGASSPLQVKYADGELERLEHKLFIGMLPKN 120
           ASRGCCFVICPSR+EADKAVNACHNK TLPGASSPLQVKYADGELERLEHKLFIGMLPKN
Sbjct: 61  ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN 120

Query: 121 VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEGINGKYKMEGSS 180
           VSEDEVS LFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALE INGK KMEGSS
Sbjct: 121 VSEDEVSSLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSS 180

Query: 181 VPLVVKWADTEKERQARKAQKAQSHASNLLNADSQHPSLFGAMPLGYAPPYNGYGYQAPG 240
           VPLVVKWADTEKERQARKAQKAQS ASN+LNADSQHPSLFGAMPLGY PPYNGYGYQAPG
Sbjct: 181 VPLVVKWADTEKERQARKAQKAQSQASNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPG 240

Query: 241 SYGLMQYHLPPMQNQSGFPNMIPQLNQGNGMRGIPPDLGPGMAPRNYGMPPANYVGSAYP 300
           SYGLMQYHLPPMQNQSG+PNMIPQLNQGN MRGIPPDLGPGMA RNYGMPPANYV SAYP
Sbjct: 241 SYGLMQYHLPPMQNQSGYPNMIPQLNQGNAMRGIPPDLGPGMATRNYGMPPANYVSSAYP 300

Query: 301 AAPGLQHPMAYHGGMMSPGVVSSSPGSGPFTGGRNNSPTSSLGKGSGGQIEG 353
             PGLQHPMAY GGMMSPGVVSSSPG GPFTGG+NNSPTSSLGKGSGGQIEG
Sbjct: 301 GVPGLQHPMAYAGGMMSPGVVSSSPGPGPFTGGKNNSPTSSLGKGSGGQIEG 350

[Close]

BLAST of Sed0024941 vs. NCBI nr
Match: XP_022953846.1 (RNA-binding protein BRN1-like [Cucurbita moschata])

HSP 1 Score: 638.3 bits (1645), Expect = 4.1e-179
Identity = 326/352 (92.61%), Postives = 332/352 (94.32%), Query Frame = 0


Query: 1   MAEDESRGERKGSSSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKTTR 60
           MAE    GERKG SSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKTTR
Sbjct: 1   MAEGSGGGERKG-SSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKTTR 60

Query: 61  ASRGCCFVICPSREEADKAVNACHNKNTLPGASSPLQVKYADGELERLEHKLFIGMLPKN 120
           ASRGCCFVICPSR+EADKA+NACHNK TLPGASSPLQVKYADGELERLEHKLFIGMLPKN
Sbjct: 61  ASRGCCFVICPSRQEADKAINACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN 120

Query: 121 VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEGINGKYKMEGSS 180
           VSEDEVS LFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALE INGK+KMEGSS
Sbjct: 121 VSEDEVSSLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKHKMEGSS 180

Query: 181 VPLVVKWADTEKERQARKAQKAQSHASNLLNADSQHPSLFGAMPLGYAPPYNGYGYQAPG 240
           VPLVVKWADTEKERQARKAQKAQS ASN+LNADSQ  SLFGA+PLGY PPYNGYGYQAPG
Sbjct: 181 VPLVVKWADTEKERQARKAQKAQSQASNVLNADSQRSSLFGAVPLGYIPPYNGYGYQAPG 240

Query: 241 SYGLMQYHLPPMQNQSGFPNMIPQLNQGNGMRGIPPDLGPGMAPRNYGMPPANYVGSAYP 300
           SYGLMQYHLPPMQNQSGFPNMIPQLNQGN MRGIPPDLGPGMA RNYGMPPA+YVGSAYP
Sbjct: 241 SYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYGMPPASYVGSAYP 300

Query: 301 AAPGLQHPMAYHGGMMSPGVVSSSPGSGPFTGGRNNSPTSSLGKGSGGQIEG 353
           A PGLQHPMAY GGMMSPGVVSSSP  GPFTGG NNSPTSSLGKGSG QIEG
Sbjct: 301 AVPGLQHPMAYPGGMMSPGVVSSSP--GPFTGGNNNSPTSSLGKGSGSQIEG 349

[Close]

BLAST of Sed0024941 vs. NCBI nr
Match: XP_023548477.1 (RNA-binding protein BRN1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023548488.1 RNA-binding protein BRN1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 636.7 bits (1641), Expect = 1.2e-178
Identity = 325/352 (92.33%), Postives = 331/352 (94.03%), Query Frame = 0


Query: 1   MAEDESRGERKGSSSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKTTR 60
           MAE    GERKG SSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKTTR
Sbjct: 1   MAEGSGGGERKG-SSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKTTR 60

Query: 61  ASRGCCFVICPSREEADKAVNACHNKNTLPGASSPLQVKYADGELERLEHKLFIGMLPKN 120
           ASRGCCFVICPSR+EADKA+NACHNK TLPGASSPLQVKYADGELERLEHKLFIGMLPKN
Sbjct: 61  ASRGCCFVICPSRQEADKAINACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN 120

Query: 121 VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEGINGKYKMEGSS 180
           VSEDEVS LFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALE INGK+KMEGSS
Sbjct: 121 VSEDEVSSLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKHKMEGSS 180

Query: 181 VPLVVKWADTEKERQARKAQKAQSHASNLLNADSQHPSLFGAMPLGYAPPYNGYGYQAPG 240
           VPLVVKWADTEKERQARKAQKAQS ASN+LNADSQ  SLFGA+PLGY PPYNGYGYQAPG
Sbjct: 181 VPLVVKWADTEKERQARKAQKAQSQASNVLNADSQRSSLFGAVPLGYIPPYNGYGYQAPG 240

Query: 241 SYGLMQYHLPPMQNQSGFPNMIPQLNQGNGMRGIPPDLGPGMAPRNYGMPPANYVGSAYP 300
           SYGLMQYHLPPMQNQSGFPNMIPQLNQGN MRGIPPDLGPGMA RNYGMPPA+YVGSAYP
Sbjct: 241 SYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYGMPPASYVGSAYP 300

Query: 301 AAPGLQHPMAYHGGMMSPGVVSSSPGSGPFTGGRNNSPTSSLGKGSGGQIEG 353
           A PGLQHPM Y GGMMSPGVVSSSP  GPFTGG NNSPTSSLGKGSG QIEG
Sbjct: 301 AVPGLQHPMTYPGGMMSPGVVSSSP--GPFTGGNNNSPTSSLGKGSGSQIEG 349

[Close]

BLAST of Sed0024941 vs. NCBI nr
Match: KAG6575869.1 (RNA-binding protein BRN1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 634.4 bits (1635), Expect = 5.9e-178
Identity = 324/352 (92.05%), Postives = 330/352 (93.75%), Query Frame = 0


Query: 1   MAEDESRGERKGSSSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKTTR 60
           MAE    GERKG SSQEEEDSVKLFVGQVPKHMTEAQLL MFQEFALVDEVNIIRDKTTR
Sbjct: 1   MAEGSGGGERKG-SSQEEEDSVKLFVGQVPKHMTEAQLLVMFQEFALVDEVNIIRDKTTR 60

Query: 61  ASRGCCFVICPSREEADKAVNACHNKNTLPGASSPLQVKYADGELERLEHKLFIGMLPKN 120
           ASRGCCFVICPSR+EADKA+NACHNK TLPGASSPLQVKYADGELERLEHKLFIGMLPKN
Sbjct: 61  ASRGCCFVICPSRQEADKAINACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN 120

Query: 121 VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEGINGKYKMEGSS 180
           VSEDEVS LFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALE INGK+KMEGSS
Sbjct: 121 VSEDEVSSLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKHKMEGSS 180

Query: 181 VPLVVKWADTEKERQARKAQKAQSHASNLLNADSQHPSLFGAMPLGYAPPYNGYGYQAPG 240
           VPLVVKWADTEKERQARKAQKAQS ASN+LNADSQ  SLFGA+PL Y PPYNGYGYQAPG
Sbjct: 181 VPLVVKWADTEKERQARKAQKAQSQASNVLNADSQRSSLFGAVPLSYIPPYNGYGYQAPG 240

Query: 241 SYGLMQYHLPPMQNQSGFPNMIPQLNQGNGMRGIPPDLGPGMAPRNYGMPPANYVGSAYP 300
           SYGLMQYHLPPMQNQSGFPNMIPQLNQGN MRGIPPDLGPGMA RNYGMPPA+YVGSAYP
Sbjct: 241 SYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYGMPPASYVGSAYP 300

Query: 301 AAPGLQHPMAYHGGMMSPGVVSSSPGSGPFTGGRNNSPTSSLGKGSGGQIEG 353
           A PGLQHPMAY GGMMSPGVVSSSP  GPFTGG NNSPTSSLGKGSG QIEG
Sbjct: 301 AVPGLQHPMAYPGGMMSPGVVSSSP--GPFTGGNNNSPTSSLGKGSGSQIEG 349

[Close]

BLAST of Sed0024941 vs. NCBI nr
Match: XP_022150171.1 (RNA-binding protein BRN1 [Momordica charantia])

HSP 1 Score: 633.6 bits (1633), Expect = 1.0e-177
Identity = 317/347 (91.35%), Postives = 330/347 (95.10%), Query Frame = 0


Query: 6   SRGERKGSSSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKTTRASRGC 65
           + G R+ S+SQEEEDSVKLFVGQVPKHM+E QLLAMFQEFALVDEVNIIRDKTTRASRGC
Sbjct: 2   AEGVRERSASQEEEDSVKLFVGQVPKHMSETQLLAMFQEFALVDEVNIIRDKTTRASRGC 61

Query: 66  CFVICPSREEADKAVNACHNKNTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEDE 125
           CFVICPSR+EADKAVNACHNK TLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSED+
Sbjct: 62  CFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEDD 121

Query: 126 VSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEGINGKYKMEGSSVPLVV 185
           VSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETK+QAVAALE INGKYKMEGSSVPLVV
Sbjct: 122 VSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKEQAVAALEAINGKYKMEGSSVPLVV 181

Query: 186 KWADTEKERQARKAQKAQSHASNLLNADSQHPSLFGAMPLGYAPPYNGYGYQAPGSYGLM 245
           KWADTEKERQARKAQKAQS  SN+LNADSQHPSLFGAMPLGY PPYNG+GYQAPGSYGLM
Sbjct: 182 KWADTEKERQARKAQKAQSQGSNVLNADSQHPSLFGAMPLGYVPPYNGFGYQAPGSYGLM 241

Query: 246 QYHLPPMQNQSGFPNMIPQLNQGNGMRGIPPDLGPGMAPRNYGMPPANYVGSAYPAAPGL 305
           QYHLPP+QNQSGF NMIPQLNQGN MRGIPPDLGPGMA RNYGMPPA+YVGSAYP  PGL
Sbjct: 242 QYHLPPIQNQSGFHNMIPQLNQGNAMRGIPPDLGPGMAARNYGMPPASYVGSAYPGVPGL 301

Query: 306 QHPMAYHGGMMSPGVVSSSPGSGPFTGGRNNSPTSSLGKGSGGQIEG 353
           QHPMAY GGMMSPGVVSSSPGSG  TGG++NSPTSSLGKGSGGQIEG
Sbjct: 302 QHPMAYPGGMMSPGVVSSSPGSGLLTGGKSNSPTSSLGKGSGGQIEG 348

[Close]

BLAST of Sed0024941 vs. ExPASy Swiss-Prot
Match: Q8LFS6 (RNA-binding protein BRN1 OS=Arabidopsis thaliana OX=3702 GN=BRN1 PE=2 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 1.3e-124
Identity = 232/331 (70.09%), Postives = 269/331 (81.27%), Query Frame = 0


Query: 1   MAEDESRGERKGSSSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKTTR 60
           MAE +     K     EEE+SVKLFVGQ+PKHM+E+QLL +FQEFA+VDEVNII+DK TR
Sbjct: 1   MAEAKEENREK----NEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITR 60

Query: 61  ASRGCCFVICPSREEADKAVNACHNKNTLPGASSPLQVKYADGELERLEHKLFIGMLPKN 120
           ASRGCCF++CPSREEADK VNACHNK TLPGA+S LQVKYADGELERLEHKLF+GMLPKN
Sbjct: 61  ASRGCCFLLCPSREEADKLVNACHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKN 120

Query: 121 VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEGINGKYKMEGSS 180
           VSE EV  LFS+YGTIKDLQILRG+QQTSKGCAFLKYETK+QAV+A+E INGK+KMEGS+
Sbjct: 121 VSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGST 180

Query: 181 VPLVVKWADTEKERQARKAQKAQSHASNLLNADSQHPSLFGAMPLGYAPPYNGYGY-QAP 240
           VPLVVKWADTE+ER  R+ QKAQSH + L N D  +PSLFGA+P+GY PPYNGYGY Q P
Sbjct: 181 VPLVVKWADTERERHTRRLQKAQSHIARLGNGDPTNPSLFGALPMGYVPPYNGYGYHQPP 240

Query: 241 GSYGLMQYHLPPMQNQSGFPNMIPQLNQG--NGMRGIPPD-LGPGMAPRNYGMPPANYVG 300
           G+YG   Y LPP+QNQ+ F NMI Q NQG  N ++G  PD + P +A RN+ MPP NY+G
Sbjct: 241 GTYG---YMLPPIQNQAAFSNMIAQPNQGNNNALQGTSPDSVPPRLARRNFPMPPGNYMG 300

Query: 301 SAYPAAPGLQHPMAYHGGMMSPGVVSSSPGS 328
           S YPA  G   P AY  G++SP  +SSSPGS
Sbjct: 301 SGYPAMRGHPFPFAYPRGIVSPRPLSSSPGS 324

[Close]

BLAST of Sed0024941 vs. ExPASy Swiss-Prot
Match: Q8GZ26 (RNA-binding protein BRN2 OS=Arabidopsis thaliana OX=3702 GN=BRN2 PE=1 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 7.7e-104
Identity = 205/342 (59.94%), Postives = 249/342 (72.81%), Query Frame = 0


Query: 15  SQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKTTRASRGCCFVICPSRE 74
           + E E+ VKLFVGQVPKHMTE QLL +F+EF++V+EVNII++KTTRA RGCCF+ CP+RE
Sbjct: 5   TMENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTRE 64

Query: 75  EADKAVNACHNKNTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEDEVSGLFSQYG 134
           +ADK +N+ HNK TLPGASSPLQVKYADGELERLEHKLF+GMLPKNVSE EV  LFS+YG
Sbjct: 65  DADKVINSFHNKKTLPGASSPLQVKYADGELERLEHKLFVGMLPKNVSETEVQSLFSEYG 124

Query: 135 TIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEGINGKYKMEGSSVPLVVKWADTEKER 194
           TIKDLQILRGS QTSKGC FLKYE+K+QAVAA+E +NG++ MEG++VPL+VKWADTEKER
Sbjct: 125 TIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWADTEKER 184

Query: 195 QARKAQKAQSHASNLLNADSQHPSLFGAMPLGYAPPYNGYGYQAPGSYGLMQYHLPPMQN 254
           QAR+  K QSH S L   D Q+PS+FGA+P+ Y PPYNGYGY  PG+YG   Y LPP+Q 
Sbjct: 185 QARRLLKVQSHVSRL---DPQNPSMFGALPMSYVPPYNGYGYHVPGTYG---YMLPPIQT 244

Query: 255 QSGFPNMIPQLNQGNG--------MRGIPPDLGPGMAPRNYGMPPANYVGSAYPAAPGLQ 314
           Q  F N+I   NQGNG           +PP L P    RN+     NY         GLQ
Sbjct: 245 QHAFHNVISP-NQGNGRALQGTALTESVPPRLAP---RRNFPTALGNY------GYHGLQ 304

Query: 315 HPMAYHGGMMSPGVVSSSPGSGPFTGGRNNSPTSSLGKGSGG 349
           +PMA+  GM+ P +  ++   G    G  + P+S   +G  G
Sbjct: 305 YPMAFPRGMIPPRLPLTTVSPGISNNG-TSIPSSLQTEGPAG 329

[Close]

BLAST of Sed0024941 vs. ExPASy Swiss-Prot
Match: O04425 (Flowering time control protein FCA OS=Arabidopsis thaliana OX=3702 GN=FCA PE=1 SV=3)

HSP 1 Score: 167.5 bits (423), Expect = 2.7e-40
Identity = 106/303 (34.98%), Postives = 163/303 (53.80%), Query Frame = 0


Query: 8   GERKGSSSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKTTRASRGCCF 67
           G   G+   +   +VKLFVG VP+  TE ++   F++   V EV +I+DK T   +GCCF
Sbjct: 106 GSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCF 165

Query: 68  VICPSREEADKAVNACHNKNTLPGASSPLQVKYADGELER---LEHKLFIGMLPKNVSED 127
           V   + ++AD+A+ A HN+ TLPG + P+QV+YADGE ER   LE KLF+G L K  +E 
Sbjct: 166 VKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEK 225

Query: 128 EVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEGINGKYKMEGSSVPLV 187
           EV  +F Q+G ++D+ ++R   + S+GC F+KY +K+ A+AA++G+NG Y M G + PL+
Sbjct: 226 EVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLI 285

Query: 188 VKWADTEKERQARKAQKAQSHASNLLNADSQHPSLFGAMPLGYAPPYNGYGYQAPGSYGL 247
           V++A+ ++ +     + A                    + LG  P +   G +   ++G 
Sbjct: 286 VRFAEPKRPKPGESREMAP------------------PVGLGSGPRFQASGPRPTSNFGD 345

Query: 248 MQ---YHLPPMQNQSGFPNMIPQLNQGNGMRGIPPDLG--PGMA--PRN-------YGMP 294
                 H  P +  +   N+ P  N   G+RG   D    PG A  P N       YG+P
Sbjct: 346 SSGDVSHTNPWRPATS-RNVGPPSN--TGIRGAGSDFSPKPGQATLPSNQGGPLGGYGVP 387

[Close]

BLAST of Sed0024941 vs. ExPASy Swiss-Prot
Match: Q91579 (CUGBP Elav-like family member 3-A OS=Xenopus laevis OX=8355 GN=tnrc4-a PE=2 SV=2)

HSP 1 Score: 167.2 bits (422), Expect = 3.5e-40
Identity = 86/206 (41.75%), Postives = 131/206 (63.59%), Query Frame = 0


Query: 17  EEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKTTRASRGCCFVICPSREEA 76
           +E D++KLF+GQ+P+++ E  L  +F++F  + E+ +I+DK T   +GC F+   +RE A
Sbjct: 2   KEPDAIKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESA 61

Query: 77  DKAVNACHNKNTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEDEVSGLFSQYGTI 136
            KA +A H + TLPG + P+QVK AD E    + KLF+GML K  ++++V  +F  +G I
Sbjct: 62  LKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRRMFEPFGNI 121

Query: 137 KDLQILRGSQQTSKGCAFLKYETKDQAVAALEGINGKYKMEGSSVPLVVKWADTEKERQA 196
            +  +LRG   TSKGCAF+K++T  +A AA+  ++G   + G+S  LVVK+ADTEKER  
Sbjct: 122 DECTVLRGPDGTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSSLVVKFADTEKERGL 181

Query: 197 RKAQKAQSHASNLLNADSQHPSLFGA 223
           R+ Q+     +N L   S     FGA
Sbjct: 182 RRMQQ----VANQLGMFSPIALQFGA 203

[Close]

BLAST of Sed0024941 vs. ExPASy Swiss-Prot
Match: Q7ZWM3 (CUGBP Elav-like family member 3-B OS=Xenopus laevis OX=8355 GN=tnrc4-b PE=2 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.5e-40
Identity = 86/206 (41.75%), Postives = 131/206 (63.59%), Query Frame = 0


Query: 17  EEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKTTRASRGCCFVICPSREEA 76
           +E D++KLF+GQ+P+++ E  L  +F++F  + E+ +I+DK T   +GC F+   +RE A
Sbjct: 2   KEPDAIKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESA 61

Query: 77  DKAVNACHNKNTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEDEVSGLFSQYGTI 136
            KA +A H + TLPG + P+QVK AD E    + KLF+GML K  ++++V  +F  +G I
Sbjct: 62  LKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRRMFETFGNI 121

Query: 137 KDLQILRGSQQTSKGCAFLKYETKDQAVAALEGINGKYKMEGSSVPLVVKWADTEKERQA 196
            +  +LRG   TSKGCAF+K++T  +A AA+  ++G   + G+S  LVVK+ADTEKER  
Sbjct: 122 DECTVLRGPDGTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSSLVVKFADTEKERGL 181

Query: 197 RKAQKAQSHASNLLNADSQHPSLFGA 223
           R+ Q+     +N L   S     FGA
Sbjct: 182 RRMQQ----VANQLGMFSPIALQFGA 203

[Close]

BLAST of Sed0024941 vs. ExPASy TrEMBL
Match: A0A6J1GP82 (RNA-binding protein BRN1-like OS=Cucurbita moschata OX=3662 GN=LOC111456261 PE=4 SV=1)

HSP 1 Score: 638.3 bits (1645), Expect = 2.0e-179
Identity = 326/352 (92.61%), Postives = 332/352 (94.32%), Query Frame = 0


Query: 1   MAEDESRGERKGSSSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKTTR 60
           MAE    GERKG SSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKTTR
Sbjct: 1   MAEGSGGGERKG-SSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKTTR 60

Query: 61  ASRGCCFVICPSREEADKAVNACHNKNTLPGASSPLQVKYADGELERLEHKLFIGMLPKN 120
           ASRGCCFVICPSR+EADKA+NACHNK TLPGASSPLQVKYADGELERLEHKLFIGMLPKN
Sbjct: 61  ASRGCCFVICPSRQEADKAINACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN 120

Query: 121 VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEGINGKYKMEGSS 180
           VSEDEVS LFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALE INGK+KMEGSS
Sbjct: 121 VSEDEVSSLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKHKMEGSS 180

Query: 181 VPLVVKWADTEKERQARKAQKAQSHASNLLNADSQHPSLFGAMPLGYAPPYNGYGYQAPG 240
           VPLVVKWADTEKERQARKAQKAQS ASN+LNADSQ  SLFGA+PLGY PPYNGYGYQAPG
Sbjct: 181 VPLVVKWADTEKERQARKAQKAQSQASNVLNADSQRSSLFGAVPLGYIPPYNGYGYQAPG 240

Query: 241 SYGLMQYHLPPMQNQSGFPNMIPQLNQGNGMRGIPPDLGPGMAPRNYGMPPANYVGSAYP 300
           SYGLMQYHLPPMQNQSGFPNMIPQLNQGN MRGIPPDLGPGMA RNYGMPPA+YVGSAYP
Sbjct: 241 SYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYGMPPASYVGSAYP 300

Query: 301 AAPGLQHPMAYHGGMMSPGVVSSSPGSGPFTGGRNNSPTSSLGKGSGGQIEG 353
           A PGLQHPMAY GGMMSPGVVSSSP  GPFTGG NNSPTSSLGKGSG QIEG
Sbjct: 301 AVPGLQHPMAYPGGMMSPGVVSSSP--GPFTGGNNNSPTSSLGKGSGSQIEG 349

[Close]

BLAST of Sed0024941 vs. ExPASy TrEMBL
Match: A0A6J1DAN8 (RNA-binding protein BRN1 OS=Momordica charantia OX=3673 GN=LOC111018416 PE=4 SV=1)

HSP 1 Score: 633.6 bits (1633), Expect = 4.9e-178
Identity = 317/347 (91.35%), Postives = 330/347 (95.10%), Query Frame = 0


Query: 6   SRGERKGSSSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKTTRASRGC 65
           + G R+ S+SQEEEDSVKLFVGQVPKHM+E QLLAMFQEFALVDEVNIIRDKTTRASRGC
Sbjct: 2   AEGVRERSASQEEEDSVKLFVGQVPKHMSETQLLAMFQEFALVDEVNIIRDKTTRASRGC 61

Query: 66  CFVICPSREEADKAVNACHNKNTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEDE 125
           CFVICPSR+EADKAVNACHNK TLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSED+
Sbjct: 62  CFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEDD 121

Query: 126 VSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEGINGKYKMEGSSVPLVV 185
           VSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETK+QAVAALE INGKYKMEGSSVPLVV
Sbjct: 122 VSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKEQAVAALEAINGKYKMEGSSVPLVV 181

Query: 186 KWADTEKERQARKAQKAQSHASNLLNADSQHPSLFGAMPLGYAPPYNGYGYQAPGSYGLM 245
           KWADTEKERQARKAQKAQS  SN+LNADSQHPSLFGAMPLGY PPYNG+GYQAPGSYGLM
Sbjct: 182 KWADTEKERQARKAQKAQSQGSNVLNADSQHPSLFGAMPLGYVPPYNGFGYQAPGSYGLM 241

Query: 246 QYHLPPMQNQSGFPNMIPQLNQGNGMRGIPPDLGPGMAPRNYGMPPANYVGSAYPAAPGL 305
           QYHLPP+QNQSGF NMIPQLNQGN MRGIPPDLGPGMA RNYGMPPA+YVGSAYP  PGL
Sbjct: 242 QYHLPPIQNQSGFHNMIPQLNQGNAMRGIPPDLGPGMAARNYGMPPASYVGSAYPGVPGL 301

Query: 306 QHPMAYHGGMMSPGVVSSSPGSGPFTGGRNNSPTSSLGKGSGGQIEG 353
           QHPMAY GGMMSPGVVSSSPGSG  TGG++NSPTSSLGKGSGGQIEG
Sbjct: 302 QHPMAYPGGMMSPGVVSSSPGSGLLTGGKSNSPTSSLGKGSGGQIEG 348

[Close]

BLAST of Sed0024941 vs. ExPASy TrEMBL
Match: A0A0A0K5R5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390170 PE=4 SV=1)

HSP 1 Score: 630.9 bits (1626), Expect = 3.2e-177
Identity = 322/352 (91.48%), Postives = 329/352 (93.47%), Query Frame = 0


Query: 1   MAEDESRGERKGSSSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKTTR 60
           MAE    GERK SS+QEEEDSVKLFVGQVPKHMTE QLL MFQEFALVDEVNIIRDKTTR
Sbjct: 1   MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTR 60

Query: 61  ASRGCCFVICPSREEADKAVNACHNKNTLPGASSPLQVKYADGELERLEHKLFIGMLPKN 120
           ASRGCCFVICPSR+EADKAVNACHNK TLPGASSPLQVKYADGELERLEHKLFIGMLPKN
Sbjct: 61  ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN 120

Query: 121 VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEGINGKYKMEGSS 180
           VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALE INGK KMEGSS
Sbjct: 121 VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSS 180

Query: 181 VPLVVKWADTEKERQARKAQKAQSHASNLLNADSQHPSLFGAMPLGYAPPYNGYGYQAPG 240
           VPLVVKWADTEKERQARKAQKAQS A+N+LNADSQHPSLFGAMPLGY PPYNGYGYQAPG
Sbjct: 181 VPLVVKWADTEKERQARKAQKAQSQATNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPG 240

Query: 241 SYGLMQYHLPPMQNQSGFPNMIPQLNQGNGMRGIPPDLGPGMAPRNYGMPPANYVGSAYP 300
           SYGLMQYHLPPMQNQSGFPNMIPQLNQGN MRGIPPDLGPGMA RNY MPPA+Y  SAYP
Sbjct: 241 SYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYAMPPASY--SAYP 300

Query: 301 AAPGLQHPMAYHGGMMSPGVVSSSPGSGPFTGGRNNSPTSSLGKGSGGQIEG 353
             P LQHPMAY GGMMSPGVVSSSPG GPFTGG+ NSPTSS+GKGSGGQIEG
Sbjct: 301 GVPALQHPMAYPGGMMSPGVVSSSPGPGPFTGGK-NSPTSSMGKGSGGQIEG 349

[Close]

BLAST of Sed0024941 vs. ExPASy TrEMBL
Match: A0A1S3BRF9 (RNA-binding protein BRN1 OS=Cucumis melo OX=3656 GN=LOC103492722 PE=4 SV=1)

HSP 1 Score: 630.9 bits (1626), Expect = 3.2e-177
Identity = 322/352 (91.48%), Postives = 329/352 (93.47%), Query Frame = 0


Query: 1   MAEDESRGERKGSSSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKTTR 60
           MAE    GERK SS+QEEEDSVKLFVGQVPKHMTE QLL MFQEFALVDEVNIIRDKTTR
Sbjct: 1   MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTR 60

Query: 61  ASRGCCFVICPSREEADKAVNACHNKNTLPGASSPLQVKYADGELERLEHKLFIGMLPKN 120
           ASRGCCFVICPSR+EADKAVNACHNK TLPGASSPLQVKYADGELERLEHKLFIGMLPKN
Sbjct: 61  ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN 120

Query: 121 VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEGINGKYKMEGSS 180
           VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALE INGK KMEGSS
Sbjct: 121 VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSS 180

Query: 181 VPLVVKWADTEKERQARKAQKAQSHASNLLNADSQHPSLFGAMPLGYAPPYNGYGYQAPG 240
           VPLVVKWADTEKERQARKAQKAQS A+N+LNADSQHPSLFGAMPLGY PPYNGYGYQAPG
Sbjct: 181 VPLVVKWADTEKERQARKAQKAQSQATNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPG 240

Query: 241 SYGLMQYHLPPMQNQSGFPNMIPQLNQGNGMRGIPPDLGPGMAPRNYGMPPANYVGSAYP 300
           SYGLMQYHLPPMQNQSGFPNMIPQLNQGN MRGIPPDLGPGMA RNY MPPA+Y  SAYP
Sbjct: 241 SYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYAMPPASY--SAYP 300

Query: 301 AAPGLQHPMAYHGGMMSPGVVSSSPGSGPFTGGRNNSPTSSLGKGSGGQIEG 353
             P LQHPMAY GGMMSPGVVSSSPG GPFTGG+ NSPTSS+GKGSGGQIEG
Sbjct: 301 GVPALQHPMAYPGGMMSPGVVSSSPGPGPFTGGK-NSPTSSMGKGSGGQIEG 349

[Close]

BLAST of Sed0024941 vs. ExPASy TrEMBL
Match: A0A6J1JX41 (RNA-binding protein BRN1-like OS=Cucurbita maxima OX=3661 GN=LOC111488257 PE=4 SV=1)

HSP 1 Score: 626.7 bits (1615), Expect = 6.0e-176
Identity = 322/352 (91.48%), Postives = 329/352 (93.47%), Query Frame = 0


Query: 1   MAEDESRGERKGSSSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKTTR 60
           MAE    GERKG SSQEEEDSVKLFVGQVPKH+TEAQLLAMFQE ALVDEVNIIRDKTTR
Sbjct: 1   MAEGSGGGERKG-SSQEEEDSVKLFVGQVPKHITEAQLLAMFQELALVDEVNIIRDKTTR 60

Query: 61  ASRGCCFVICPSREEADKAVNACHNKNTLPGASSPLQVKYADGELERLEHKLFIGMLPKN 120
           ASRGCCFVICPSR+EADKA+NACHNK TLPGASSPLQVKYADGELERLEHKLFIGMLPKN
Sbjct: 61  ASRGCCFVICPSRQEADKAINACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN 120

Query: 121 VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEGINGKYKMEGSS 180
           VSEDEVS LFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALE INGK+KMEGSS
Sbjct: 121 VSEDEVSSLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKHKMEGSS 180

Query: 181 VPLVVKWADTEKERQARKAQKAQSHASNLLNADSQHPSLFGAMPLGYAPPYNGYGYQAPG 240
           VPLVVKWADTEKERQARKAQKAQS ASN+LNADSQ  SLFGA+PLGY PPYNGYGYQAPG
Sbjct: 181 VPLVVKWADTEKERQARKAQKAQSQASNVLNADSQCSSLFGAVPLGYIPPYNGYGYQAPG 240

Query: 241 SYGLMQYHLPPMQNQSGFPNMIPQLNQGNGMRGIPPDLGPGMAPRNYGMPPANYVGSAYP 300
           SYGLMQYHLPPMQNQSGFPNMIPQLNQGN MRGI PDLGPGMA RNYGMPPA+YVGSAYP
Sbjct: 241 SYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGISPDLGPGMATRNYGMPPASYVGSAYP 300

Query: 301 AAPGLQHPMAYHGGMMSPGVVSSSPGSGPFTGGRNNSPTSSLGKGSGGQIEG 353
           A P LQHPMAY GGMMSPGVVSSSP  GPFTGG NNSPTSSLGKGSG QIEG
Sbjct: 301 AVPCLQHPMAYPGGMMSPGVVSSSP--GPFTGGNNNSPTSSLGKGSGSQIEG 349

[Close]

BLAST of Sed0024941 vs. TAIR 10
Match: AT4G03110.2 (RNA-binding protein-defense related 1 )

HSP 1 Score: 450.3 bits (1157), Expect = 1.5e-126
Identity = 231/330 (70.00%), Postives = 268/330 (81.21%), Query Frame = 0


Query: 1   MAEDESRGERKGSSSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKTTR 60
           MAE +     K     EEE+SVKLFVGQ+PKHM+E+QLL +FQEFA+VDEVNII+DK TR
Sbjct: 1   MAEAKEENREK----NEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITR 60

Query: 61  ASRGCCFVICPSREEADKAVNACHNKNTLPGASSPLQVKYADGELERLEHKLFIGMLPKN 120
           ASRGCCF++CPSREEADK VNACHNK TLPGA+S LQVKYADGELERLEHKLF+GMLPKN
Sbjct: 61  ASRGCCFLLCPSREEADKLVNACHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKN 120

Query: 121 VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEGINGKYKMEGSS 180
           VSE EV  LFS+YGTIKDLQILRG+QQTSKGCAFLKYETK+QAV+A+E INGK+KMEGS+
Sbjct: 121 VSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGST 180

Query: 181 VPLVVKWADTEKERQARKAQKAQSHASNLLNADSQHPSLFGAMPLGYAPPYNGYGYQAPG 240
           VPLVVKWADTE+ER  R+ QKAQSH + L N D  +PSLFGA+P+GY PPYNGYGY  PG
Sbjct: 181 VPLVVKWADTERERHTRRLQKAQSHIARLGNGDPTNPSLFGALPMGYVPPYNGYGYHPPG 240

Query: 241 SYGLMQYHLPPMQNQSGFPNMIPQLNQG--NGMRGIPPD-LGPGMAPRNYGMPPANYVGS 300
           +YG   Y LPP+QNQ+ F NMI Q NQG  N ++G  PD + P +A RN+ MPP NY+GS
Sbjct: 241 TYG---YMLPPIQNQAAFSNMIAQPNQGNNNALQGTSPDSVPPRLARRNFPMPPGNYMGS 300

Query: 301 AYPAAPGLQHPMAYHGGMMSPGVVSSSPGS 328
            YPA  G   P AY  G++SP  +SSSPGS
Sbjct: 301 GYPAMRGHPFPFAYPRGIVSPRPLSSSPGS 323

[Close]

BLAST of Sed0024941 vs. TAIR 10
Match: AT4G03110.1 (RNA-binding protein-defense related 1 )

HSP 1 Score: 447.6 bits (1150), Expect = 9.5e-126
Identity = 232/331 (70.09%), Postives = 269/331 (81.27%), Query Frame = 0


Query: 1   MAEDESRGERKGSSSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKTTR 60
           MAE +     K     EEE+SVKLFVGQ+PKHM+E+QLL +FQEFA+VDEVNII+DK TR
Sbjct: 1   MAEAKEENREK----NEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITR 60

Query: 61  ASRGCCFVICPSREEADKAVNACHNKNTLPGASSPLQVKYADGELERLEHKLFIGMLPKN 120
           ASRGCCF++CPSREEADK VNACHNK TLPGA+S LQVKYADGELERLEHKLF+GMLPKN
Sbjct: 61  ASRGCCFLLCPSREEADKLVNACHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKN 120

Query: 121 VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEGINGKYKMEGSS 180
           VSE EV  LFS+YGTIKDLQILRG+QQTSKGCAFLKYETK+QAV+A+E INGK+KMEGS+
Sbjct: 121 VSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGST 180

Query: 181 VPLVVKWADTEKERQARKAQKAQSHASNLLNADSQHPSLFGAMPLGYAPPYNGYGY-QAP 240
           VPLVVKWADTE+ER  R+ QKAQSH + L N D  +PSLFGA+P+GY PPYNGYGY Q P
Sbjct: 181 VPLVVKWADTERERHTRRLQKAQSHIARLGNGDPTNPSLFGALPMGYVPPYNGYGYHQPP 240

Query: 241 GSYGLMQYHLPPMQNQSGFPNMIPQLNQG--NGMRGIPPD-LGPGMAPRNYGMPPANYVG 300
           G+YG   Y LPP+QNQ+ F NMI Q NQG  N ++G  PD + P +A RN+ MPP NY+G
Sbjct: 241 GTYG---YMLPPIQNQAAFSNMIAQPNQGNNNALQGTSPDSVPPRLARRNFPMPPGNYMG 300

Query: 301 SAYPAAPGLQHPMAYHGGMMSPGVVSSSPGS 328
           S YPA  G   P AY  G++SP  +SSSPGS
Sbjct: 301 SGYPAMRGHPFPFAYPRGIVSPRPLSSSPGS 324

[Close]

BLAST of Sed0024941 vs. TAIR 10
Match: AT1G03457.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 378.6 bits (971), Expect = 5.4e-105
Identity = 205/342 (59.94%), Postives = 249/342 (72.81%), Query Frame = 0


Query: 15  SQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKTTRASRGCCFVICPSRE 74
           + E E+ VKLFVGQVPKHMTE QLL +F+EF++V+EVNII++KTTRA RGCCF+ CP+RE
Sbjct: 5   TMENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTRE 64

Query: 75  EADKAVNACHNKNTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEDEVSGLFSQYG 134
           +ADK +N+ HNK TLPGASSPLQVKYADGELERLEHKLF+GMLPKNVSE EV  LFS+YG
Sbjct: 65  DADKVINSFHNKKTLPGASSPLQVKYADGELERLEHKLFVGMLPKNVSETEVQSLFSEYG 124

Query: 135 TIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEGINGKYKMEGSSVPLVVKWADTEKER 194
           TIKDLQILRGS QTSKGC FLKYE+K+QAVAA+E +NG++ MEG++VPL+VKWADTEKER
Sbjct: 125 TIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWADTEKER 184

Query: 195 QARKAQKAQSHASNLLNADSQHPSLFGAMPLGYAPPYNGYGYQAPGSYGLMQYHLPPMQN 254
           QAR+  K QSH S L   D Q+PS+FGA+P+ Y PPYNGYGY  PG+YG   Y LPP+Q 
Sbjct: 185 QARRLLKVQSHVSRL---DPQNPSMFGALPMSYVPPYNGYGYHVPGTYG---YMLPPIQT 244

Query: 255 QSGFPNMIPQLNQGNG--------MRGIPPDLGPGMAPRNYGMPPANYVGSAYPAAPGLQ 314
           Q  F N+I   NQGNG           +PP L P    RN+     NY         GLQ
Sbjct: 245 QHAFHNVISP-NQGNGRALQGTALTESVPPRLAP---RRNFPTALGNY------GYHGLQ 304

Query: 315 HPMAYHGGMMSPGVVSSSPGSGPFTGGRNNSPTSSLGKGSGG 349
           +PMA+  GM+ P +  ++   G    G  + P+S   +G  G
Sbjct: 305 YPMAFPRGMIPPRLPLTTVSPGISNNG-TSIPSSLQTEGPAG 329

[Close]

BLAST of Sed0024941 vs. TAIR 10
Match: AT1G03457.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 370.9 bits (951), Expect = 1.1e-102
Identity = 205/351 (58.40%), Postives = 249/351 (70.94%), Query Frame = 0


Query: 15  SQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKTTRASRGCCFVICPSRE 74
           + E E+ VKLFVGQVPKHMTE QLL +F+EF++V+EVNII++KTTRA RGCCF+ CP+RE
Sbjct: 5   TMENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTRE 64

Query: 75  EADKAVNACHNKNTLPGASSPLQVKYADGELERL---------EHKLFIGMLPKNVSEDE 134
           +ADK +N+ HNK TLPGASSPLQVKYADGELERL         EHKLF+GMLPKNVSE E
Sbjct: 65  DADKVINSFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSETE 124

Query: 135 VSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEGINGKYKMEGSSVPLVV 194
           V  LFS+YGTIKDLQILRGS QTSKGC FLKYE+K+QAVAA+E +NG++ MEG++VPL+V
Sbjct: 125 VQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIV 184

Query: 195 KWADTEKERQARKAQKAQSHASNLLNADSQHPSLFGAMPLGYAPPYNGYGYQAPGSYGLM 254
           KWADTEKERQAR+  K QSH S L   D Q+PS+FGA+P+ Y PPYNGYGY  PG+YG  
Sbjct: 185 KWADTEKERQARRLLKVQSHVSRL---DPQNPSMFGALPMSYVPPYNGYGYHVPGTYG-- 244

Query: 255 QYHLPPMQNQSGFPNMIPQLNQGNG--------MRGIPPDLGPGMAPRNYGMPPANYVGS 314
            Y LPP+Q Q  F N+I   NQGNG           +PP L P    RN+     NY   
Sbjct: 245 -YMLPPIQTQHAFHNVISP-NQGNGRALQGTALTESVPPRLAP---RRNFPTALGNY--- 304

Query: 315 AYPAAPGLQHPMAYHGGMMSPGVVSSSPGSGPFTGGRNNSPTSSLGKGSGG 349
                 GLQ+PMA+  GM+ P +  ++   G    G  + P+S   +G  G
Sbjct: 305 ---GYHGLQYPMAFPRGMIPPRLPLTTVSPGISNNG-TSIPSSLQTEGPAG 338

[Close]

BLAST of Sed0024941 vs. TAIR 10
Match: AT4G16280.2 (RNA binding;abscisic acid binding )

HSP 1 Score: 167.5 bits (423), Expect = 1.9e-41
Identity = 106/303 (34.98%), Postives = 163/303 (53.80%), Query Frame = 0


Query: 8   GERKGSSSQEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKTTRASRGCCF 67
           G   G+   +   +VKLFVG VP+  TE ++   F++   V EV +I+DK T   +GCCF
Sbjct: 106 GSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCF 165

Query: 68  VICPSREEADKAVNACHNKNTLPGASSPLQVKYADGELER---LEHKLFIGMLPKNVSED 127
           V   + ++AD+A+ A HN+ TLPG + P+QV+YADGE ER   LE KLF+G L K  +E 
Sbjct: 166 VKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEK 225

Query: 128 EVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEGINGKYKMEGSSVPLV 187
           EV  +F Q+G ++D+ ++R   + S+GC F+KY +K+ A+AA++G+NG Y M G + PL+
Sbjct: 226 EVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLI 285

Query: 188 VKWADTEKERQARKAQKAQSHASNLLNADSQHPSLFGAMPLGYAPPYNGYGYQAPGSYGL 247
           V++A+ ++ +     + A                    + LG  P +   G +   ++G 
Sbjct: 286 VRFAEPKRPKPGESREMAP------------------PVGLGSGPRFQASGPRPTSNFGD 345

Query: 248 MQ---YHLPPMQNQSGFPNMIPQLNQGNGMRGIPPDLG--PGMA--PRN-------YGMP 294
                 H  P +  +   N+ P  N   G+RG   D    PG A  P N       YG+P
Sbjct: 346 SSGDVSHTNPWRPATS-RNVGPPSN--TGIRGAGSDFSPKPGQATLPSNQGGPLGGYGVP 387

The following BLAST results are available for this feature:

BLAST of Sed0024941 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900154.1	9.7e-181	93.47	RNA-binding protein BRN1 [Benincasa hispida]	[more]
XP_022953846.1	4.1e-179	92.61	RNA-binding protein BRN1-like [Cucurbita moschata]	[more]
XP_023548477.1	1.2e-178	92.33	RNA-binding protein BRN1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023548...	[more]
KAG6575869.1	5.9e-178	92.05	RNA-binding protein BRN1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022150171.1	1.0e-177	91.35	RNA-binding protein BRN1 [Momordica charantia]	[more]

BLAST of Sed0024941 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LFS6	1.3e-124	70.09	RNA-binding protein BRN1 OS=Arabidopsis thaliana OX=3702 GN=BRN1 PE=2 SV=1	[more]
Q8GZ26	7.7e-104	59.94	RNA-binding protein BRN2 OS=Arabidopsis thaliana OX=3702 GN=BRN2 PE=1 SV=1	[more]
O04425	2.7e-40	34.98	Flowering time control protein FCA OS=Arabidopsis thaliana OX=3702 GN=FCA PE=1 S...	[more]
Q91579	3.5e-40	41.75	CUGBP Elav-like family member 3-A OS=Xenopus laevis OX=8355 GN=tnrc4-a PE=2 SV=2	[more]
Q7ZWM3	3.5e-40	41.75	CUGBP Elav-like family member 3-B OS=Xenopus laevis OX=8355 GN=tnrc4-b PE=2 SV=1	[more]

BLAST of Sed0024941 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GP82	2.0e-179	92.61	RNA-binding protein BRN1-like OS=Cucurbita moschata OX=3662 GN=LOC111456261 PE=4...	[more]
A0A6J1DAN8	4.9e-178	91.35	RNA-binding protein BRN1 OS=Momordica charantia OX=3673 GN=LOC111018416 PE=4 SV=...	[more]
A0A0A0K5R5	3.2e-177	91.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390170 PE=4 SV=1	[more]
A0A1S3BRF9	3.2e-177	91.48	RNA-binding protein BRN1 OS=Cucumis melo OX=3656 GN=LOC103492722 PE=4 SV=1	[more]
A0A6J1JX41	6.0e-176	91.48	RNA-binding protein BRN1-like OS=Cucurbita maxima OX=3661 GN=LOC111488257 PE=4 S...	[more]

BLAST of Sed0024941 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G03110.2	1.5e-126	70.00	RNA-binding protein-defense related 1	[more]
AT4G03110.1	9.5e-126	70.09	RNA-binding protein-defense related 1	[more]
AT1G03457.1	5.4e-105	59.94	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G03457.2	1.1e-102	58.40	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G16280.2	1.9e-41	34.98	RNA binding;abscisic acid binding	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002343	Paraneoplastic encephalomyelitis antigen	PRINTS	PR00961	HUDSXLRNA	coord: 115..130 score: 32.71 coord: 171..188 score: 34.26 coord: 130..142 score: 52.82 coord: 22..37 score: 30.62
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 111..186 e-value: 8.3E-18 score: 75.2 coord: 23..99 e-value: 1.0E-16 score: 71.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 24..87 e-value: 1.6E-13 score: 50.2 coord: 112..176 e-value: 2.5E-16 score: 59.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 22..103 score: 13.737158
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 110..190 score: 16.124914
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 107..199 e-value: 3.1E-24 score: 86.9
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 9..106 e-value: 6.2E-25 score: 89.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 322..347
None	No IPR available	PANTHER	PTHR24012:SF844	RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED	coord: 15..327
None	No IPR available	PANTHER	PTHR24012	RNA BINDING PROTEIN	coord: 15..327
None	No IPR available	CDD	cd12361	RRM1_2_CELF1-6_like	coord: 23..99 e-value: 1.77334E-39 score: 132.671
None	No IPR available	CDD	cd12361	RRM1_2_CELF1-6_like	coord: 111..186 e-value: 3.32187E-35 score: 121.885
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 10..105
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 108..199

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0024941.1	Sed0024941.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding