Sed0024913 (gene) Chayote v1

Overview


Name	Sed0024913
Type	gene
Organism	Sechium edule (Chayote v1)
Description	DNA-directed RNA polymerase subunit beta'
Location	LG13: 18501716 .. 18504487 (+)
RNA-Seq Expression	Sed0024913
Synteny	Sed0024913

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGATCGGTATAAACATCAACAACTCCGAATTGGATTAGTTTCTCCTCAACAAATAAGTGCTTGGGCCAATAAAACCCTACCTAATGGCGAGATAGTTGGAGAGGTAACAAAACCCTATACTTTTCATTACAAAACCAATAAACCTGAAAAAGATGGATTATTTTGTGAAAGAATTTTTGGGCCTATAAAAAGCGGGATTTGTGCTTGTGGAAATTATCGAGTAATCGGAGATAAAAAAGAAGATTCGAAATTTTGTGAACAATGCGGAGTCGAATTTGTTGATTCTCGGATACGACGATATCAAATGGGCTATATTAAACTGGCATGCCCAGTAACCCATGTGTGGTATTTGAAACGTCTTCCTAGTTATATCGCGAATCTTTTAGATAAACCTCTTAAAGAATTAGAAGGCTTAGTATATTGCGATGTGTGATTTGATCAAAATTTTGATTTTACAGATTCAGAATCAGAAACTGTCATCCCATTCAATCGAATTGGGATGCCCCGGATCTGACATGTGGCTTGCTTGGTAGGAGTAACATGAAGCTCAGAATTTTGGGTGTAGTCAATACTCCCATCCCAAAAAAAGGAATTGGTCTATGGTCGATTCAGTAATAAATAGGAATTTTAAGTTCTACCTCGTGAAAAAAAAACTTATTTCTTTTGTGTAATTAACCATTCCCTTTTCTTTCACAAAGAAATGAAATTATGTTCAAATAAGCAAATATGTCATGGTTAAAGGAGTCTATCCATCGCATATAGGCTTTAAGGACATCGTGGCATAACCGTCGAGGTGAAGTAGGGACCTAAAAGATCGAATGGAACGATACAAAGACAAGTAAATCCCTTATGAATTCCAAAGTACTCCTTATTAATTTTAATTAAGCGGATTCCTCATTCAAGGAAATAGACTACTCAAAAATTTCACATTTCTTTTTTTTTATGTTGTAATTATAAAGAACTGAGAAAATTGAAATAAAAAAGCAAAAGAATCAATGAAATGTTGTTTGGTCTTAATTGAGAACTTGAGTAAAGAGTAGTTGGGGGTTTTATAGAATTTGAAAGCGGGAACTCCTTTATTTGATGTAACTACTTGAGCCGGATGAAAAGAAACTTTCACGTCCGATTTTGAAAGGGGGAGATCCTATAGTATCCTATCCAAATTTTTCGTTTGCTAGGCCCATAGCTAAAAAACCTACTTTCTTACGATTACGGGGTTCATTCGAATATGAAATCCAATCCTGGAAATACAGCATCCCACTTTTTTTTACTACCCAAGGCTTCGATACATTTAGAAATCGAGAAATTTCTACCGGAGCAGGTGCTATACGAGAACAATTAGCCGATCTGGATTTGCGACTTATTATAGATTATTCGTTGGTAGAATGGAAAGAATTGGGGAAGAAGGACCGCGGGTAATGAATGGGAAGATCGAAAAGTTGGAAGAAGAAAGGATTTTTTGGTTAGACGTATGGAATTAGCTAAGCATTTTATTCGAACAAATATAGAACCCGAATGGATGGTTTTATGTCTATTACCAGTTCTTCCTCCCGAGTTGAGACCAATCATTCAGATAGATGGGGGTAAACTAATGAGCTCGGATATTAATGAACTCTATAGAAGAGTTATCTATCGGAACAATACTCTTATTGATCTATTAACAACAAGTAGATCTACGCCAGGAGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAAGTTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGAGGGAAGATTTCGTGAGACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTAGGTCCCTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCGAACATAGGCGTTGCTAAGAGTAAAATTAGGGAAAAAGAACCCATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCGTATTGCTAAATAGAGCGCCTACTCTGCATAGATTAGGCATCCAGGCCTTCCAACCTATTTTAGTGGACGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCCGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCGGAGGCGCGTTTACTTATGTTTTCTCATATGAATCTCTTGTCTTCAGCTATTGGGGATCCCATTTCTGTACCAACTCAAGATATGCTTATTGGGCTCTATGTATTAACGAGCGGGAATCGACGAGGTATTTGTGCAAATCGGTATAATCCAGGTAATCGCAAAAATAATAAAAATGAAAAAATTTACAATAATAAATATACGAAAGAACCCTTTTTTTGTAATTCCTATGATGCAATTGGAGCTTATCGCCAGAAAAGAATCAATTTAGATAGTCCGTTGTGGCTCCGATGGCGACTAGATCAACGCGTTATTGCTTCAAGAGAAGCCCCTATCGAAGTTCACTATGAATCTTTGGGTACCCATCATGAGATTTATGGGTCCTATCTAATAGTAAAAAGTATAAAAAAAGAAATTCTTTGTATATACATTCAAACCACTGTTGGTCATATTTCTCTTTATCGAGAAATCGAAGAGGCTATACAAGGATTTTGCCGGGCCTGTTCATATGGTACCTAA

mRNA sequence

ATGATTGATCGGTATAAACATCAACAACTCCGAATTGGATTAGTTTCTCCTCAACAAATAAGTGCTTGGGCCAATAAAACCCTACCTAATGGCGAGATAGTTGGAGAGGTAACAAAACCCTATACTTTTCATTACAAAACCAATAAACCTGAAAAAGATGGATTATTTTGTGAAAGAATTTTTGGGCCTATAAAAAGCGGGATTTGTGCTTGTGGAAATTATCGAGTAATCGGAGATAAAAAAGAAGATTCGAAATTTTGTGAACAATGCGGAGTCGAATTTGTTGATTCTCGGATACGACGATATCAAATGGGCTATATTAAACTGGCATGCCCAGTAACCCATGTGTGGTATTTGAAACGTCTTCCTAGTTATATCGCGAATCTTTTAGATAAACCTCTTAAAGAATTAGAAGGCTTAGTATATTGCGATAAACTTTCACGTCCGATTTTGAAAGGGGGAGATCCTATAGTATCCTATCCAAATTTTTCGTTTGCTAGGCCCATAGCTAAAAAACCTACTTTCTTACGATTACGGGGTTCATTCGAATATGAAATCCAATCCTGGAAATACAGCATCCCACTTTTTTTTACTACCCAAGGCTTCGATACATTTAGAAATCGAGAAATTTCTACCGGAGCAGGTGCTATACGAGAACAATTAGCCGATCTGGATTTGCGACTTATTATAGATTATTCGACCGCGGGTAATGAATGGGAAGATCGAAAAGTTGGAAGAAGAAAGGATTTTTTGGTTAGACGTATGGAATTAGCTAAGCATTTTATTCGAACAAATATAGAACCCGAATGGATGGTTTTATGTCTATTACCAGTTCTTCCTCCCGAGTTGAGACCAATCATTCAGATAGATGGGGGTAAACTAATGAGCTCGGATATTAATGAACTCTATAGAAGAGTTATCTATCGGAACAATACTCTTATTGATCTATTAACAACAAGTAGATCTACGCCAGGAGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAAGTTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGAGGGAAGATTTCGTGAGACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTAGGTCCCTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCGAACATAGGCGTTGCTAAGAGTAAAATTAGGGAAAAAGAACCCATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCGTATTGCTAAATAGAGCGCCTACTCTGCATAGATTAGGCATCCAGGCCTTCCAACCTATTTTAGTGGACGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCCGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCGGAGGCGCGTTTACTTATGTTTTCTCATATGAATCTCTTGTCTTCAGCTATTGGGGATCCCATTTCTGTACCAACTCAAGATATGCTTATTGGGCTCTATGTATTAACGAGCGGGAATCGACGAGGTATTTGTGCAAATCGGTATAATCCAGGTAATCGCAAAAATAATAAAAATGAAAAAATTTACAATAATAAATATACGAAAGAACCCTTTTTTTGTAATTCCTATGATGCAATTGGAGCTTATCGCCAGAAAAGAATCAATTTAGATAGTCCGTTGTGGCTCCGATGGCGACTAGATCAACGCGTTATTGCTTCAAGAGAAGCCCCTATCGAAGTTCACTATGAATCTTTGGGTACCCATCATGAGATTTATGGGTCCTATCTAATAGTAAAAAGTATAAAAAAAGAAATTCTTTGTATATACATTCAAACCACTGTTGGTCATATTTCTCTTTATCGAGAAATCGAAGAGGCTATACAAGGATTTTGCCGGGCCTGTTCATATGGTACCTAA

Coding sequence (CDS)

ATGATTGATCGGTATAAACATCAACAACTCCGAATTGGATTAGTTTCTCCTCAACAAATAAGTGCTTGGGCCAATAAAACCCTACCTAATGGCGAGATAGTTGGAGAGGTAACAAAACCCTATACTTTTCATTACAAAACCAATAAACCTGAAAAAGATGGATTATTTTGTGAAAGAATTTTTGGGCCTATAAAAAGCGGGATTTGTGCTTGTGGAAATTATCGAGTAATCGGAGATAAAAAAGAAGATTCGAAATTTTGTGAACAATGCGGAGTCGAATTTGTTGATTCTCGGATACGACGATATCAAATGGGCTATATTAAACTGGCATGCCCAGTAACCCATGTGTGGTATTTGAAACGTCTTCCTAGTTATATCGCGAATCTTTTAGATAAACCTCTTAAAGAATTAGAAGGCTTAGTATATTGCGATAAACTTTCACGTCCGATTTTGAAAGGGGGAGATCCTATAGTATCCTATCCAAATTTTTCGTTTGCTAGGCCCATAGCTAAAAAACCTACTTTCTTACGATTACGGGGTTCATTCGAATATGAAATCCAATCCTGGAAATACAGCATCCCACTTTTTTTTACTACCCAAGGCTTCGATACATTTAGAAATCGAGAAATTTCTACCGGAGCAGGTGCTATACGAGAACAATTAGCCGATCTGGATTTGCGACTTATTATAGATTATTCGACCGCGGGTAATGAATGGGAAGATCGAAAAGTTGGAAGAAGAAAGGATTTTTTGGTTAGACGTATGGAATTAGCTAAGCATTTTATTCGAACAAATATAGAACCCGAATGGATGGTTTTATGTCTATTACCAGTTCTTCCTCCCGAGTTGAGACCAATCATTCAGATAGATGGGGGTAAACTAATGAGCTCGGATATTAATGAACTCTATAGAAGAGTTATCTATCGGAACAATACTCTTATTGATCTATTAACAACAAGTAGATCTACGCCAGGAGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAAGTTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGAGGGAAGATTTCGTGAGACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTAGGTCCCTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCGAACATAGGCGTTGCTAAGAGTAAAATTAGGGAAAAAGAACCCATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCGTATTGCTAAATAGAGCGCCTACTCTGCATAGATTAGGCATCCAGGCCTTCCAACCTATTTTAGTGGACGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCCGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCGGAGGCGCGTTTACTTATGTTTTCTCATATGAATCTCTTGTCTTCAGCTATTGGGGATCCCATTTCTGTACCAACTCAAGATATGCTTATTGGGCTCTATGTATTAACGAGCGGGAATCGACGAGGTATTTGTGCAAATCGGTATAATCCAGGTAATCGCAAAAATAATAAAAATGAAAAAATTTACAATAATAAATATACGAAAGAACCCTTTTTTTGTAATTCCTATGATGCAATTGGAGCTTATCGCCAGAAAAGAATCAATTTAGATAGTCCGTTGTGGCTCCGATGGCGACTAGATCAACGCGTTATTGCTTCAAGAGAAGCCCCTATCGAAGTTCACTATGAATCTTTGGGTACCCATCATGAGATTTATGGGTCCTATCTAATAGTAAAAAGTATAAAAAAAGAAATTCTTTGTATATACATTCAAACCACTGTTGGTCATATTTCTCTTTATCGAGAAATCGAAGAGGCTATACAAGGATTTTGCCGGGCCTGTTCATATGGTACCTAA

Protein sequence

MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSTAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNNKYTKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT

Homology

[Close]

BLAST of Sed0024913 vs. NCBI nr
Match: YP_009945408.1 (RNA polymerase beta' subunit [Sechium edule] >QIT04124.1 RNA polymerase beta' subunit [Sechium edule] >QOE55938.1 RNA polymerase beta' subunit [Sechium edule])

HSP 1 Score: 1350.1 bits (3493), Expect = 0.0e+00
Identity = 666/696 (95.69%), Postives = 666/696 (95.69%), Query Frame = 0


Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRG 180
           RLPSYIANLLDKPLKELEGLVYCD                  FSFARPIAKKPTFLRLRG
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCD------------------FSFARPIAKKPTFLRLRG 180

Query: 181 SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYS------- 240
           SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYS       
Sbjct: 181 SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKEL 240

Query: 241 ----TAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI 300
                AGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
Sbjct: 241 GEEGPAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI 300

Query: 301 DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG 360
           DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG
Sbjct: 301 DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG 360

Query: 361 QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA 420
           QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA
Sbjct: 361 QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA 420

Query: 421 IELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG 480
           IELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG
Sbjct: 421 IELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG 480

Query: 481 IQAFQPILVDGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS 540
           IQAFQPILVDGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS
Sbjct: 481 IQAFQPILVDGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS 540

Query: 541 AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNNKYTKEPFFCNS 600
           AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNNKYTKEPFFCNS
Sbjct: 541 AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNNKYTKEPFFCNS 600

Query: 601 YDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIK 660
           YDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIK
Sbjct: 601 YDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIK 660

Query: 661 KEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT 686
           KEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT
Sbjct: 661 KEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT 678

[Close]

BLAST of Sed0024913 vs. NCBI nr
Match: AHM88680.1 (RNA polymerase beta [Lagenaria siceraria] >AHM89029.1 RNA polymerase beta [Lagenaria siceraria] >AHM89088.1 RNA polymerase beta [Lagenaria siceraria] >AHM89147.1 RNA polymerase beta [Lagenaria siceraria] >AHM89206.1 RNA polymerase beta [Lagenaria siceraria])

HSP 1 Score: 1337.8 bits (3461), Expect = 0.0e+00
Identity = 662/698 (94.84%), Postives = 665/698 (95.27%), Query Frame = 0


Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRG 180
           RLPSYIANLLDKPLKELEGLVYCD                  FSFARPIAKKPTFLRLRG
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCD------------------FSFARPIAKKPTFLRLRG 180

Query: 181 SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYS------- 240
           SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYS       
Sbjct: 181 SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKEL 240

Query: 241 ----TAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI 300
                AGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
Sbjct: 241 GEEGPAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI 300

Query: 301 DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG 360
           DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG
Sbjct: 301 DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG 360

Query: 361 QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA 420
           QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA
Sbjct: 361 QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA 420

Query: 421 IELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG 480
           IELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG
Sbjct: 421 IELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG 480

Query: 481 IQAFQPILVDGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS 540
           IQAFQPILV+GRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS
Sbjct: 481 IQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS 540

Query: 541 AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNN--KYTKEPFFC 600
           AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNP NRKN+KNEKIYNN  KYTKEPFFC
Sbjct: 541 AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPSNRKNHKNEKIYNNNYKYTKEPFFC 600

Query: 601 NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKS 660
           NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKS
Sbjct: 601 NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKS 660

Query: 661 IKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT 686
           IKKEILCIYI+TTVGHISLYREIEEAIQGFCRACSYGT
Sbjct: 661 IKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT 680

[Close]

BLAST of Sed0024913 vs. NCBI nr
Match: YP_009456137.1 (RNA polymerase beta' subunit [Lagenaria siceraria] >AUJ21903.1 RNA polymerase beta' subunit [Lagenaria siceraria] >QNM38522.1 RNA polymerase beta' subunit [Lagenaria siceraria var. microcarpa])

HSP 1 Score: 1337.8 bits (3461), Expect = 0.0e+00
Identity = 662/698 (94.84%), Postives = 665/698 (95.27%), Query Frame = 0


Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRG 180
           RLPSYIANLLDKPLKELEGLVYCD                  FSFARPIAKKPTFLRLRG
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCDV-----------------FSFARPIAKKPTFLRLRG 180

Query: 181 SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYS------- 240
           SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYS       
Sbjct: 181 SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKEL 240

Query: 241 ----TAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI 300
                AGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
Sbjct: 241 GEEGPAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI 300

Query: 301 DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG 360
           DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG
Sbjct: 301 DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG 360

Query: 361 QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA 420
           QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA
Sbjct: 361 QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA 420

Query: 421 IELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG 480
           IELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG
Sbjct: 421 IELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG 480

Query: 481 IQAFQPILVDGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS 540
           IQAFQPILV+GRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS
Sbjct: 481 IQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS 540

Query: 541 AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNN--KYTKEPFFC 600
           AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNP NRKN+KNEKIYNN  KYTKEPFFC
Sbjct: 541 AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPSNRKNHKNEKIYNNNYKYTKEPFFC 600

Query: 601 NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKS 660
           NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKS
Sbjct: 601 NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKS 660

Query: 661 IKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT 686
           IKKEILCIYI+TTVGHISLYREIEEAIQGFCRACSYGT
Sbjct: 661 IKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT 681

[Close]

BLAST of Sed0024913 vs. NCBI nr
Match: QZL38672.1 (RNA polymerase beta' subunit [Citrullus ecirrhosus])

HSP 1 Score: 1336.2 bits (3457), Expect = 0.0e+00
Identity = 661/698 (94.70%), Postives = 665/698 (95.27%), Query Frame = 0


Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRG 180
           RLPSYIANLLDKPLKELEGLVYCD                  FSFARPIAKKPTFLRLRG
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCD------------------FSFARPIAKKPTFLRLRG 180

Query: 181 SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYS------- 240
           SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYS       
Sbjct: 181 SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKEL 240

Query: 241 ----TAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI 300
                AGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
Sbjct: 241 GEEGPAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI 300

Query: 301 DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG 360
           DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG
Sbjct: 301 DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG 360

Query: 361 QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA 420
           QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA
Sbjct: 361 QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA 420

Query: 421 IELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG 480
           IELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG
Sbjct: 421 IELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG 480

Query: 481 IQAFQPILVDGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS 540
           IQAFQPILV+GRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS
Sbjct: 481 IQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS 540

Query: 541 AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNN--KYTKEPFFC 600
           AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNP NRKN+KNEKIYNN  KYTKEPFFC
Sbjct: 541 AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPSNRKNHKNEKIYNNNYKYTKEPFFC 600

Query: 601 NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKS 660
           NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKS
Sbjct: 601 NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKS 660

Query: 661 IKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT 686
           IKKEILCIYI++TVGHISLYREIEEAIQGFCRACSYGT
Sbjct: 661 IKKEILCIYIRSTVGHISLYREIEEAIQGFCRACSYGT 680

[Close]

BLAST of Sed0024913 vs. NCBI nr
Match: YP_009325980.1 (RNA polymerase beta' subunit [Citrullus lanatus] >YP_009348022.1 RNA polymerase beta' subunit [Citrullus mucosospermus] >YP_009431548.1 RNA polymerase beta' subunit [Citrullus amarus] >APW82622.1 RNA polymerase beta' subunit [Citrullus lanatus subsp. vulgaris] >APD52471.1 RNA polymerase beta' subunit [Citrullus lanatus] >APW82707.1 RNA polymerase beta' subunit [Citrullus mucosospermus] >APW82792.1 RNA polymerase beta' subunit [Citrullus mucosospermus] >APW82877.1 RNA polymerase beta' subunit [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 1336.2 bits (3457), Expect = 0.0e+00
Identity = 661/698 (94.70%), Postives = 665/698 (95.27%), Query Frame = 0


Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRG 180
           RLPSYIANLLDKPLKELEGLVYCD                  FSFARPIAKKPTFLRLRG
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCDV-----------------FSFARPIAKKPTFLRLRG 180

Query: 181 SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYS------- 240
           SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYS       
Sbjct: 181 SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKEL 240

Query: 241 ----TAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI 300
                AGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
Sbjct: 241 GEEGPAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI 300

Query: 301 DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG 360
           DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG
Sbjct: 301 DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG 360

Query: 361 QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA 420
           QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA
Sbjct: 361 QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA 420

Query: 421 IELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG 480
           IELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG
Sbjct: 421 IELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG 480

Query: 481 IQAFQPILVDGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS 540
           IQAFQPILV+GRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS
Sbjct: 481 IQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS 540

Query: 541 AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNN--KYTKEPFFC 600
           AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNP NRKN+KNEKIYNN  KYTKEPFFC
Sbjct: 541 AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPSNRKNHKNEKIYNNNYKYTKEPFFC 600

Query: 601 NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKS 660
           NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKS
Sbjct: 601 NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKS 660

Query: 661 IKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT 686
           IKKEILCIYI++TVGHISLYREIEEAIQGFCRACSYGT
Sbjct: 661 IKKEILCIYIRSTVGHISLYREIEEAIQGFCRACSYGT 681

[Close]

BLAST of Sed0024913 vs. ExPASy Swiss-Prot
Match: Q4VZP2 (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE=3 SV=3)

HSP 1 Score: 1335.5 bits (3455), Expect = 0.0e+00
Identity = 661/698 (94.70%), Postives = 664/698 (95.13%), Query Frame = 0


Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRG 180
           RLPSYIANLLDKPLKELEGLVYCD                  FSFARPIAKKPTFLRLRG
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCD------------------FSFARPIAKKPTFLRLRG 180

Query: 181 SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYS------- 240
           SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYS       
Sbjct: 181 SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKEL 240

Query: 241 ----TAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI 300
                AGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
Sbjct: 241 GEEGPAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI 300

Query: 301 DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG 360
           DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG
Sbjct: 301 DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG 360

Query: 361 QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA 420
           QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA
Sbjct: 361 QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA 420

Query: 421 IELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG 480
           IELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG
Sbjct: 421 IELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG 480

Query: 481 IQAFQPILVDGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS 540
           IQAFQPILV+GRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS
Sbjct: 481 IQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS 540

Query: 541 AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNN--KYTKEPFFC 600
           AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNP NRKN+KNEKIYNN  KYTKEPFFC
Sbjct: 541 AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPSNRKNHKNEKIYNNNYKYTKEPFFC 600

Query: 601 NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKS 660
           NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYG YLIVKS
Sbjct: 601 NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKS 660

Query: 661 IKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT 686
           IKKEILCIYI+TTVGHISLYREIEEAIQGFCRACSYGT
Sbjct: 661 IKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT 680

[Close]

BLAST of Sed0024913 vs. ExPASy Swiss-Prot
Match: B1A926 (DNA-directed RNA polymerase subunit beta' OS=Carica papaya OX=3649 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 1287.3 bits (3330), Expect = 0.0e+00
Identity = 634/698 (90.83%), Postives = 652/698 (93.41%), Query Frame = 0


Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIGLVSPQQISAWAN+ LPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWANRILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGD+KED KFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRG 180
           RLPSYIANLLDKPLKELEGLVYCD                  FSFARPI KKPTFLRLRG
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCD------------------FSFARPITKKPTFLRLRG 180

Query: 181 SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYS------- 240
           SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDL++IIDYS       
Sbjct: 181 SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLQIIIDYSFLEWKEL 240

Query: 241 ----TAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI 300
                 GNEWEDRK+GRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
Sbjct: 241 GEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI 300

Query: 301 DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG 360
           DGGKLMSSDINELYRRVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG
Sbjct: 301 DGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG 360

Query: 361 QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA 420
           QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA
Sbjct: 361 QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA 420

Query: 421 IELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG 480
           IELFQTF+IRGLIRQH ASN+GVAKSKIREKEPI+WEILQEVMQGHPVLLNRAPTLHRLG
Sbjct: 421 IELFQTFVIRGLIRQHLASNMGVAKSKIREKEPIIWEILQEVMQGHPVLLNRAPTLHRLG 480

Query: 481 IQAFQPILVDGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS 540
           IQAFQPILV+GRAICLHPLV KGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS 
Sbjct: 481 IQAFQPILVEGRAICLHPLVRKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSP 540

Query: 541 AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNN--KYTKEPFFC 600
           AIGDPISVPTQDML+GLYVLTSG RRGICANRYNP NRKN +NE+I +N  KYTKEPFFC
Sbjct: 541 AIGDPISVPTQDMLMGLYVLTSGTRRGICANRYNPCNRKNYQNERIDDNNYKYTKEPFFC 600

Query: 601 NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKS 660
           NSYDAIGAYRQKRINLDSPLWLRW+LDQRVIASREAPIEVHYESLGT+HEIYG YLIV+S
Sbjct: 601 NSYDAIGAYRQKRINLDSPLWLRWQLDQRVIASREAPIEVHYESLGTYHEIYGHYLIVRS 660

Query: 661 IKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT 686
           +KKEILCIYI+TTVGHISLYREIEEAIQGFCRACSY T
Sbjct: 661 VKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYDT 680

[Close]

BLAST of Sed0024913 vs. ExPASy Swiss-Prot
Match: Q49L07 (DNA-directed RNA polymerase subunit beta' OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 1278.8 bits (3308), Expect = 0.0e+00
Identity = 627/700 (89.57%), Postives = 647/700 (92.43%), Query Frame = 0


Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIG VSPQQISAWA K LPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGSVSPQQISAWAKKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGD+KED KFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRG 180
           RLPSYIAN+LDKPLKELEGLVYCD                  FSFARPIAKKPTFLRLRG
Sbjct: 121 RLPSYIANILDKPLKELEGLVYCD------------------FSFARPIAKKPTFLRLRG 180

Query: 181 SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYS------- 240
            FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLR+IIDYS       
Sbjct: 181 LFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKEL 240

Query: 241 ----TAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI 300
                 GNEWEDRK+GRRKDFLVRRMELAKHF+RTNIEPEWMVLCLLPVLPPELRPIIQI
Sbjct: 241 GEERPTGNEWEDRKIGRRKDFLVRRMELAKHFLRTNIEPEWMVLCLLPVLPPELRPIIQI 300

Query: 301 DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG 360
           DGGKLMSSDINELYRRVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG
Sbjct: 301 DGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG 360

Query: 361 QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA 420
           QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSL LHRCGLPREIA
Sbjct: 361 QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLPLHRCGLPREIA 420

Query: 421 IELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG 480
           IELFQTF+IRGLIRQH ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG
Sbjct: 421 IELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG 480

Query: 481 IQAFQPILVDGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS 540
           IQAFQPILV+GRAICLHPLV KGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS 
Sbjct: 481 IQAFQPILVEGRAICLHPLVRKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSP 540

Query: 541 AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNNKY----TKEPF 600
           AIGDPISVPTQDMLIGLYVLTSGNRRGIC NRYNP NR+N +NE+ Y+N Y     KEPF
Sbjct: 541 AIGDPISVPTQDMLIGLYVLTSGNRRGICTNRYNPWNRRNYQNERTYDNNYKYRKKKEPF 600

Query: 601 FCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIV 660
           FCNSYDAIGAYRQKRINLDSPLWLRWRLDQR+IASRE PIE+HYESLGT+HEIYG YLIV
Sbjct: 601 FCNSYDAIGAYRQKRINLDSPLWLRWRLDQRIIASREVPIEIHYESLGTYHEIYGHYLIV 660

Query: 661 KSIKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT 686
           +S+KKEI+CIYI+TTVGHISL+REIEEAIQGFCRACS+GT
Sbjct: 661 RSVKKEIICIYIRTTVGHISLFREIEEAIQGFCRACSFGT 682

[Close]

BLAST of Sed0024913 vs. ExPASy Swiss-Prot
Match: Q68S15 (DNA-directed RNA polymerase subunit beta' OS=Panax ginseng OX=4054 GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 1274.2 bits (3296), Expect = 0.0e+00
Identity = 629/699 (89.99%), Postives = 648/699 (92.70%), Query Frame = 0


Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIG VSPQQIS WANK LPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGSVSPQQISTWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIG++KED KFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGNEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRG 180
           RLPSYIANLLDKPLKELEGLVYCD                  FSFARPIAKKPTFLRLRG
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCD------------------FSFARPIAKKPTFLRLRG 180

Query: 181 SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYS------- 240
           SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLR+IID S       
Sbjct: 181 SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRIIIDSSLVEWKEL 240

Query: 241 ----TAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI 300
                 GNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
Sbjct: 241 GEDGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI 300

Query: 301 DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG 360
           DGGKLMSSDINELYRRVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG
Sbjct: 301 DGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG 360

Query: 361 QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA 420
           QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA
Sbjct: 361 QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA 420

Query: 421 IELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG 480
           IELFQTF+IRGLIRQH ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG
Sbjct: 421 IELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG 480

Query: 481 IQAFQPILVDGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS 540
           IQAFQP+LV+GRAICLHPLV KGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS 
Sbjct: 481 IQAFQPVLVEGRAICLHPLVRKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSP 540

Query: 541 AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNNKY----TKEPF 600
           AIGDPISVPTQDMLIGLYVLTSGNRRGIC NRYNP NR+N +NE+IY+N Y     KEPF
Sbjct: 541 AIGDPISVPTQDMLIGLYVLTSGNRRGICVNRYNPCNRRNYQNERIYDNNYKYTKKKEPF 600

Query: 601 FCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIV 660
           FCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVI+++EAP+EVHYESLGT++EIYG YLIV
Sbjct: 601 FCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVISAKEAPLEVHYESLGTYYEIYGQYLIV 660

Query: 661 KSIKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYG 685
           +SIKKEIL IYI+TTVGHISLYREIEEAIQGFC+ACSYG
Sbjct: 661 RSIKKEILYIYIRTTVGHISLYREIEEAIQGFCQACSYG 681

[Close]

BLAST of Sed0024913 vs. ExPASy Swiss-Prot
Match: Q09X26 (DNA-directed RNA polymerase subunit beta' OS=Morus indica OX=248361 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 1266.9 bits (3277), Expect = 0.0e+00
Identity = 626/702 (89.17%), Postives = 644/702 (91.74%), Query Frame = 0


Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIG VSPQQISAWA K LPNGEI+GEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGSVSPQQISAWAKKILPNGEIIGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIG+ KED KFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGNDKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRG 180
           RLPSYIANLLDKPLKELEGLVYCD                  FSFARPIAKKPTFLRLRG
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCD------------------FSFARPIAKKPTFLRLRG 180

Query: 181 SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSTAG---- 240
           SFEYEIQSWKYSIPLFFTTQGFD FRNREISTGAGAIREQLADLDL +IIDYS       
Sbjct: 181 SFEYEIQSWKYSIPLFFTTQGFDAFRNREISTGAGAIREQLADLDLPIIIDYSLVEWKEL 240

Query: 241 -------NEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI 300
                  NEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
Sbjct: 241 GEERPTVNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI 300

Query: 301 DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG 360
           DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTL DNGIRG
Sbjct: 301 DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLFDNGIRG 360

Query: 361 QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA 420
           QPMRDGHNKVYKSFSD+IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA
Sbjct: 361 QPMRDGHNKVYKSFSDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA 420

Query: 421 IELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG 480
           IELFQTF+IRGLIRQHFASNIGVAKSKIREKEP+VWEILQ+VMQGHPVLLNRAPTLHRLG
Sbjct: 421 IELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILQDVMQGHPVLLNRAPTLHRLG 480

Query: 481 IQAFQPILVDGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS 540
           IQAFQPILV+G AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSH NLLS 
Sbjct: 481 IQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSP 540

Query: 541 AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNNKY------TKE 600
           AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNP N +N +NE+I +NKY       KE
Sbjct: 541 AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNYRNYQNERIDDNKYKYTKTQEKE 600

Query: 601 PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYL 660
           PFFCNSYDAIGAYRQKRI+LDSPLWLRWRLDQRVI SREAPIEVHY+SLGT+HEIYG  L
Sbjct: 601 PFFCNSYDAIGAYRQKRIHLDSPLWLRWRLDQRVITSREAPIEVHYQSLGTYHEIYGHLL 660

Query: 661 IVKSIKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT 686
           IV+SIKKEILCIY++TTVGHISLYREIEEAIQGF RACSYGT
Sbjct: 661 IVRSIKKEILCIYLRTTVGHISLYREIEEAIQGFFRACSYGT 684

[Close]

BLAST of Sed0024913 vs. ExPASy TrEMBL
Match: A0A6H0ER08 (DNA-directed RNA polymerase subunit beta' OS=Sechium edule OX=184140 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 1350.1 bits (3493), Expect = 0.0e+00
Identity = 666/696 (95.69%), Postives = 666/696 (95.69%), Query Frame = 0


Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRG 180
           RLPSYIANLLDKPLKELEGLVYCD                  FSFARPIAKKPTFLRLRG
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCD------------------FSFARPIAKKPTFLRLRG 180

Query: 181 SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYS------- 240
           SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYS       
Sbjct: 181 SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKEL 240

Query: 241 ----TAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI 300
                AGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
Sbjct: 241 GEEGPAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI 300

Query: 301 DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG 360
           DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG
Sbjct: 301 DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG 360

Query: 361 QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA 420
           QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA
Sbjct: 361 QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA 420

Query: 421 IELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG 480
           IELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG
Sbjct: 421 IELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG 480

Query: 481 IQAFQPILVDGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS 540
           IQAFQPILVDGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS
Sbjct: 481 IQAFQPILVDGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS 540

Query: 541 AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNNKYTKEPFFCNS 600
           AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNNKYTKEPFFCNS
Sbjct: 541 AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNNKYTKEPFFCNS 600

Query: 601 YDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIK 660
           YDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIK
Sbjct: 601 YDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIK 660

Query: 661 KEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT 686
           KEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT
Sbjct: 661 KEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT 678

[Close]

BLAST of Sed0024913 vs. ExPASy TrEMBL
Match: X2F7V3 (DNA-directed RNA polymerase subunit beta' OS=Lagenaria siceraria OX=3668 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 1337.8 bits (3461), Expect = 0.0e+00
Identity = 662/698 (94.84%), Postives = 665/698 (95.27%), Query Frame = 0


Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRG 180
           RLPSYIANLLDKPLKELEGLVYCD                  FSFARPIAKKPTFLRLRG
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCD------------------FSFARPIAKKPTFLRLRG 180

Query: 181 SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYS------- 240
           SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYS       
Sbjct: 181 SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKEL 240

Query: 241 ----TAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI 300
                AGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
Sbjct: 241 GEEGPAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI 300

Query: 301 DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG 360
           DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG
Sbjct: 301 DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG 360

Query: 361 QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA 420
           QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA
Sbjct: 361 QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA 420

Query: 421 IELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG 480
           IELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG
Sbjct: 421 IELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG 480

Query: 481 IQAFQPILVDGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS 540
           IQAFQPILV+GRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS
Sbjct: 481 IQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS 540

Query: 541 AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNN--KYTKEPFFC 600
           AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNP NRKN+KNEKIYNN  KYTKEPFFC
Sbjct: 541 AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPSNRKNHKNEKIYNNNYKYTKEPFFC 600

Query: 601 NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKS 660
           NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKS
Sbjct: 601 NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKS 660

Query: 661 IKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT 686
           IKKEILCIYI+TTVGHISLYREIEEAIQGFCRACSYGT
Sbjct: 661 IKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT 680

[Close]

BLAST of Sed0024913 vs. ExPASy TrEMBL
Match: A0A2I6C061 (DNA-directed RNA polymerase subunit beta' OS=Lagenaria siceraria OX=3668 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 1337.8 bits (3461), Expect = 0.0e+00
Identity = 662/698 (94.84%), Postives = 665/698 (95.27%), Query Frame = 0


Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRG 180
           RLPSYIANLLDKPLKELEGLVYCD                  FSFARPIAKKPTFLRLRG
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCDV-----------------FSFARPIAKKPTFLRLRG 180

Query: 181 SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYS------- 240
           SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYS       
Sbjct: 181 SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKEL 240

Query: 241 ----TAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI 300
                AGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
Sbjct: 241 GEEGPAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI 300

Query: 301 DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG 360
           DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG
Sbjct: 301 DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG 360

Query: 361 QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA 420
           QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA
Sbjct: 361 QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA 420

Query: 421 IELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG 480
           IELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG
Sbjct: 421 IELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG 480

Query: 481 IQAFQPILVDGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS 540
           IQAFQPILV+GRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS
Sbjct: 481 IQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS 540

Query: 541 AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNN--KYTKEPFFC 600
           AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNP NRKN+KNEKIYNN  KYTKEPFFC
Sbjct: 541 AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPSNRKNHKNEKIYNNNYKYTKEPFFC 600

Query: 601 NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKS 660
           NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKS
Sbjct: 601 NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKS 660

Query: 661 IKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT 686
           IKKEILCIYI+TTVGHISLYREIEEAIQGFCRACSYGT
Sbjct: 661 IKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT 681

[Close]

BLAST of Sed0024913 vs. ExPASy TrEMBL
Match: A0A7G9IT28 (DNA-directed RNA polymerase subunit beta' OS=Lagenaria siceraria var. microcarpa OX=2726058 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 1337.8 bits (3461), Expect = 0.0e+00
Identity = 662/698 (94.84%), Postives = 665/698 (95.27%), Query Frame = 0


Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRG 180
           RLPSYIANLLDKPLKELEGLVYCD                  FSFARPIAKKPTFLRLRG
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCDV-----------------FSFARPIAKKPTFLRLRG 180

Query: 181 SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYS------- 240
           SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYS       
Sbjct: 181 SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKEL 240

Query: 241 ----TAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI 300
                AGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
Sbjct: 241 GEEGPAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI 300

Query: 301 DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG 360
           DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG
Sbjct: 301 DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG 360

Query: 361 QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA 420
           QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA
Sbjct: 361 QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA 420

Query: 421 IELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG 480
           IELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG
Sbjct: 421 IELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG 480

Query: 481 IQAFQPILVDGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS 540
           IQAFQPILV+GRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS
Sbjct: 481 IQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS 540

Query: 541 AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNN--KYTKEPFFC 600
           AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNP NRKN+KNEKIYNN  KYTKEPFFC
Sbjct: 541 AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPSNRKNHKNEKIYNNNYKYTKEPFFC 600

Query: 601 NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKS 660
           NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKS
Sbjct: 601 NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKS 660

Query: 661 IKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT 686
           IKKEILCIYI+TTVGHISLYREIEEAIQGFCRACSYGT
Sbjct: 661 IKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT 681

[Close]

BLAST of Sed0024913 vs. ExPASy TrEMBL
Match: A0A1P8LE65 (DNA-directed RNA polymerase subunit gamma OS=Citrullus mucosospermus OX=519315 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 1336.2 bits (3457), Expect = 0.0e+00
Identity = 661/698 (94.70%), Postives = 665/698 (95.27%), Query Frame = 0


Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRG 180
           RLPSYIANLLDKPLKELEGLVYCD                  FSFARPIAKKPTFLRLRG
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCDV-----------------FSFARPIAKKPTFLRLRG 180

Query: 181 SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYS------- 240
           SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYS       
Sbjct: 181 SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKEL 240

Query: 241 ----TAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI 300
                AGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
Sbjct: 241 GEEGPAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI 300

Query: 301 DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG 360
           DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG
Sbjct: 301 DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG 360

Query: 361 QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA 420
           QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA
Sbjct: 361 QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA 420

Query: 421 IELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG 480
           IELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG
Sbjct: 421 IELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG 480

Query: 481 IQAFQPILVDGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS 540
           IQAFQPILV+GRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS
Sbjct: 481 IQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS 540

Query: 541 AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNN--KYTKEPFFC 600
           AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNP NRKN+KNEKIYNN  KYTKEPFFC
Sbjct: 541 AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPSNRKNHKNEKIYNNNYKYTKEPFFC 600

Query: 601 NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKS 660
           NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKS
Sbjct: 601 NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKS 660

Query: 661 IKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT 686
           IKKEILCIYI++TVGHISLYREIEEAIQGFCRACSYGT
Sbjct: 661 IKKEILCIYIRSTVGHISLYREIEEAIQGFCRACSYGT 681

[Close]

BLAST of Sed0024913 vs. TAIR 10
Match: ATCG00180.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 1257.7 bits (3253), Expect = 0.0e+00
Identity = 619/698 (88.68%), Postives = 639/698 (91.55%), Query Frame = 0


Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIGLVSPQQISAWA K +PNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWATKIIPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGD+KED KFCEQCGVEFVDSRIRRYQMGYIKL CPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRG 180
           RLPSYIANLLDKPLKELEGLVYCD                  FSFARPI KKPTFLRLRG
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCD------------------FSFARPITKKPTFLRLRG 180

Query: 181 SFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYS------- 240
           SFEYEIQSWKYSIPLFFTTQGFD FRNREISTGAGAIREQLADLDLR+II+ S       
Sbjct: 181 SFEYEIQSWKYSIPLFFTTQGFDIFRNREISTGAGAIREQLADLDLRIIIENSLVEWKQL 240

Query: 241 ----TAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI 300
                 GNEWEDRK+ RRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
Sbjct: 241 GEEGPTGNEWEDRKIVRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI 300

Query: 301 DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG 360
           +GGKLMSSDINELYRRVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG
Sbjct: 301 EGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG 360

Query: 361 QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA 420
           QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA
Sbjct: 361 QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA 420

Query: 421 IELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLG 480
           IELFQTF+IRGLIRQH ASNIGVAKS+IREK+PIVWEILQEVMQGHPVLLNRAPTLHRLG
Sbjct: 421 IELFQTFVIRGLIRQHLASNIGVAKSQIREKKPIVWEILQEVMQGHPVLLNRAPTLHRLG 480

Query: 481 IQAFQPILVDGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS 540
           IQ+FQPILV+GR ICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS 
Sbjct: 481 IQSFQPILVEGRTICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSP 540

Query: 541 AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIY--NNKYTKEPFFC 600
           AIGDPISVPTQDMLIGLYVLTSG RRGICANRYNP NRKN +NE+IY  N KYTKEPFFC
Sbjct: 541 AIGDPISVPTQDMLIGLYVLTSGTRRGICANRYNPCNRKNYQNERIYETNYKYTKEPFFC 600

Query: 601 NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKS 660
           NSYDAIGAYRQK+INLDSPLWLRW+LDQRVIASRE PIEVHYES G +HEIY  YLIV+S
Sbjct: 601 NSYDAIGAYRQKKINLDSPLWLRWQLDQRVIASREVPIEVHYESFGNYHEIYAHYLIVRS 660

Query: 661 IKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT 686
           +KKE  CIYI+TTVGHIS YREIEEAIQGF +ACSY T
Sbjct: 661 VKKENFCIYIRTTVGHISFYREIEEAIQGFSQACSYDT 680

[Close]

BLAST of Sed0024913 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit )

HSP 1 Score: 129.4 bits (324), Expect = 1.1e-29
Identity = 88/310 (28.39%), Postives = 142/310 (45.81%), Query Frame = 0


Query: 268 PEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGEL 327
           P+WM+L +LP+ PP +RP + +D       D+      +I  N  L          P  +
Sbjct: 242 PDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENL--KRQEKNGAPAHI 301

Query: 328 VMCQEKLVQEAVDTLLDNGIRGQP-MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 387
           +    +L+Q  + T  DN + GQP       +  KS    ++ KEGR R  L+GKRVD+S
Sbjct: 302 ISEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 361

Query: 388 GRSVIVVGPSLSLHRCGLPREIAIEL--------FQTFLIRGLI--RQHFASNIGVAKSK 447
            R+VI   P++++   G+P  IA+ L        +    ++ L+    H       AK  
Sbjct: 362 ARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYI 421

Query: 448 IREKE----------------PIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDG 507
           IR+                   + +++ + +  G  VL NR P+LH++ I   +  ++  
Sbjct: 422 IRDDGQRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPY 481

Query: 508 RAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQ 551
               L+  V   +NADFDGD+M +HVP S E +AE   LM     ++S     P+    Q
Sbjct: 482 STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQ 541

[Close]

BLAST of Sed0024913 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 124.8 bits (312), Expect = 2.7e-28
Identity = 88/308 (28.57%), Postives = 151/308 (49.03%), Query Frame = 0


Query: 268 PEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGEL 327
           PE +++  + V P  +RP + I G +   +D+    +++I  N +L  +L+   S+P  +
Sbjct: 250 PENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPTSSPKNM 309

Query: 328 VMCQEKLVQEAVDTLLDNGIRG-QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 387
            +     VQ  V   +++ +RG Q   + H          ++GK GRFR  L GKRV+++
Sbjct: 310 QVWD--TVQIEVARYINSEVRGCQNQPEEH--PLSGILQRLKGKGGRFRANLSGKRVEFT 369

Query: 388 GRSVIVVGPSLSLHRCGLPREIA-------------IELFQTFLIRGLIRQHFASN---- 447
           GR+VI   P+L +   G+P  +A             IE  +  +  G  +   A N    
Sbjct: 370 GRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVRYP 429

Query: 448 -------IGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRA 507
                  +G  + +I ++  I   + + + +G  VL NR P+LHR+ I   +  ++  R 
Sbjct: 430 DGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRARIMPWRT 489

Query: 508 ICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDM 551
           +  +  VC  +NADFDGD+M +HVP + EA+ EA  LM    NL +   G+ +   TQD 
Sbjct: 490 LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILVASTQDF 549

[Close]

BLAST of Sed0024913 vs. TAIR 10
Match: AT5G60040.2 (nuclear RNA polymerase C1 )

HSP 1 Score: 124.8 bits (312), Expect = 2.7e-28
Identity = 88/308 (28.57%), Postives = 151/308 (49.03%), Query Frame = 0


Query: 268 PEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGEL 327
           PE +++  + V P  +RP + I G +   +D+    +++I  N +L  +L+   S+P  +
Sbjct: 260 PENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPTSSPKNM 319

Query: 328 VMCQEKLVQEAVDTLLDNGIRG-QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 387
            +     VQ  V   +++ +RG Q   + H          ++GK GRFR  L GKRV+++
Sbjct: 320 QVWD--TVQIEVARYINSEVRGCQNQPEEH--PLSGILQRLKGKGGRFRANLSGKRVEFT 379

Query: 388 GRSVIVVGPSLSLHRCGLPREIA-------------IELFQTFLIRGLIRQHFASN---- 447
           GR+VI   P+L +   G+P  +A             IE  +  +  G  +   A N    
Sbjct: 380 GRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVRYP 439

Query: 448 -------IGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRA 507
                  +G  + +I ++  I   + + + +G  VL NR P+LHR+ I   +  ++  R 
Sbjct: 440 DGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRARIMPWRT 499

Query: 508 ICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDM 551
           +  +  VC  +NADFDGD+M +HVP + EA+ EA  LM    NL +   G+ +   TQD 
Sbjct: 500 LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILVASTQDF 559

[Close]

BLAST of Sed0024913 vs. TAIR 10
Match: AT3G57660.1 (nuclear RNA polymerase A1 )

HSP 1 Score: 87.0 bits (214), Expect = 6.2e-17
Identity = 82/317 (25.87%), Postives = 138/317 (43.53%), Query Frame = 0


Query: 278 VLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQE 337
           V P + RP     G  +M         +VI  NN L +  T         V+ + + +QE
Sbjct: 348 VPPTKFRP-PTTGGDSVMEHPQTVGLNKVIESNNILGNACTNKLDQ--SKVIFRWRNLQE 407

Query: 338 AVDTLLDNGIRG-QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPS 397
           +V+ L D+     Q  RD           ++E KEG FR+ ++GKRV+++ RSVI   P 
Sbjct: 408 SVNVLFDSKTATVQSQRDS-----SGICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPY 467

Query: 398 LSLHRCGLPREIAIEL-------------FQTFLIRGLI----RQHFASNIGVAKSKIRE 457
           ++++  G+P   A++L              +  +I G        H++      K    E
Sbjct: 468 IAVNDIGIPPCFALKLTYPERVTPWNVEKLREAIINGPDIHPGATHYSDKSSTMKLPSTE 527

Query: 458 K--EPIVWEIL-----------------------QEVMQGHPVLLNRAPTLHRLGIQAFQ 517
           K    I  ++L                       + +  G  VL+NR PTLH+  + A +
Sbjct: 528 KARRAIARKLLSSRGATTELGKTCDINFEGKTVHRHMRDGDIVLVNRQPTLHKPSLMAHK 587

Query: 518 PILVDG-RAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGD 551
             ++ G + + LH   C  +NADFDGD+M VH P    ++AEA  ++ ++      + G+
Sbjct: 588 VRVLKGEKTLRLHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGE 647

The following BLAST results are available for this feature:

BLAST of Sed0024913 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009945408.1	0.0e+00	95.69	RNA polymerase beta' subunit [Sechium edule] >QIT04124.1 RNA polymerase beta' su...	[more]
AHM88680.1	0.0e+00	94.84	RNA polymerase beta [Lagenaria siceraria] >AHM89029.1 RNA polymerase beta [Lagen...	[more]
YP_009456137.1	0.0e+00	94.84	RNA polymerase beta' subunit [Lagenaria siceraria] >AUJ21903.1 RNA polymerase be...	[more]
QZL38672.1	0.0e+00	94.70	RNA polymerase beta' subunit [Citrullus ecirrhosus]	[more]
YP_009325980.1	0.0e+00	94.70	RNA polymerase beta' subunit [Citrullus lanatus] >YP_009348022.1 RNA polymerase ...	[more]

BLAST of Sed0024913 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP2	0.0e+00	94.70	DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE...	[more]
B1A926	0.0e+00	90.83	DNA-directed RNA polymerase subunit beta' OS=Carica papaya OX=3649 GN=rpoC1 PE=3...	[more]
Q49L07	0.0e+00	89.57	DNA-directed RNA polymerase subunit beta' OS=Eucalyptus globulus subsp. globulus...	[more]
Q68S15	0.0e+00	89.99	DNA-directed RNA polymerase subunit beta' OS=Panax ginseng OX=4054 GN=rpoC1 PE=3...	[more]
Q09X26	0.0e+00	89.17	DNA-directed RNA polymerase subunit beta' OS=Morus indica OX=248361 GN=rpoC1 PE=...	[more]

BLAST of Sed0024913 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6H0ER08	0.0e+00	95.69	DNA-directed RNA polymerase subunit beta' OS=Sechium edule OX=184140 GN=rpoC1 PE...	[more]
X2F7V3	0.0e+00	94.84	DNA-directed RNA polymerase subunit beta' OS=Lagenaria siceraria OX=3668 GN=rpoC...	[more]
A0A2I6C061	0.0e+00	94.84	DNA-directed RNA polymerase subunit beta' OS=Lagenaria siceraria OX=3668 GN=rpoC...	[more]
A0A7G9IT28	0.0e+00	94.84	DNA-directed RNA polymerase subunit beta' OS=Lagenaria siceraria var. microcarpa...	[more]
A0A1P8LE65	0.0e+00	94.70	DNA-directed RNA polymerase subunit gamma OS=Citrullus mucosospermus OX=519315 G...	[more]

BLAST of Sed0024913 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00180.1	0.0e+00	88.68	DNA-directed RNA polymerase family protein	[more]
AT4G35800.1	1.1e-29	28.39	RNA polymerase II large subunit	[more]
AT5G60040.1	2.7e-28	28.57	nuclear RNA polymerase C1	[more]
AT5G60040.2	2.7e-28	28.57	nuclear RNA polymerase C1	[more]
AT3G57660.1	6.2e-17	25.87	nuclear RNA polymerase A1	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006592	RNA polymerase, N-terminal	SMART	SM00663	rpolaneu7	coord: 269..550 e-value: 9.2E-156 score: 533.4
None	No IPR available	GENE3D	1.10.40.90		coord: 409..453 e-value: 4.1E-16 score: 60.8
None	No IPR available	GENE3D	2.40.40.20		coord: 368..521 e-value: 3.9E-46 score: 158.2
None	No IPR available	PANTHER	PTHR19376:SF54	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA'	coord: 5..648
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 5..648
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 7..675
IPR042102	RNA polymerase Rpb1, domain 3 superfamily	GENE3D	1.10.274.100	RNA polymerase Rpb1, domain 3	coord: 525..681 e-value: 2.3E-24 score: 88.5
IPR044893	RNA polymerase Rpb1, clamp domain superfamily	GENE3D	4.10.860.120	RNA polymerase II, clamp domain	coord: 3..136 e-value: 7.2E-15 score: 56.8
IPR007080	RNA polymerase Rpb1, domain 1	PFAM	PF04997	RNA_pol_Rpb1_1	coord: 8..378 e-value: 9.1E-51 score: 173.0
IPR000722	RNA polymerase, alpha subunit	PFAM	PF00623	RNA_pol_Rpb1_2	coord: 436..520 e-value: 1.9E-26 score: 93.3 coord: 380..427 e-value: 4.4E-7 score: 30.3
IPR034678	DNA-directed RNA polymerase subunit RpoC1	HAMAP	MF_01323	RNApol_bact_RpoC1	coord: 1..676 score: 26.570702

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0024913.1	Sed0024913.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0008270	zinc ion binding