Sed0024889 (gene) Chayote v1

Overview


Name	Sed0024889
Type	gene
Organism	Sechium edule (Chayote v1)
Description	U6 snRNA-associated Sm-like protein LSm8
Location	LG01: 13258607 .. 13262796 (-)
RNA-Seq Expression	Sed0024889
Synteny	Sed0024889

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAACTCGTTTCGTTAATTTTATTACTTATGAGAAAAAACTCGTTAAAAAAAGAGAGAGAGAGATAGAGGGAAAAAGAGAAACCTAAACCCTTGCACCTTCTCTTCTTCTTCTACTTCTTCACGCCTGAACCTTTTCCCTTCCAGAGGTGAAGTGTCGCCGCCGCTTCCGCCGCCGCAATCCCGGTCAGCGCCTCCACTTTTGTCATCTTTCTTCCGCTCCTGCCGCCGCAGAGCGAGTTGCATTGTTTTTCTACTCACGTATCGTTGTTACTGGTATTCTCCTGATCTCTATCTATGTCTCTCTTCTCGCTTTAAAAACTCAAATTAGGACTCGTCCATCCACGAAATGAGGAGTTGTTTTGATTTTATTGTTATTATTATGAGTAACGATGCCAAAATATCAATCTAAAGAAAATCAGTTGCCCTCCCACTGCATTTGTCTGCCAATCGAGCTCTGATCATCTGTATATATCTCTTTCAATCCCGCAACTCCGACCGTTTGCTTTGAATTGAAGCTTCATAACGCTTCTTTTTCTCCTGCAATTAATCTGTGCCTGGATGTAATGGTTTTTCATTTTCCTTGTTGTTTTGGACAGAATCTAGCCGATCTGATTATACAGCACAAATCGTAGCTTGTTGTAAGGGTCTTCAATATGGAAAATGGGCCTGGACTTGAATCTTTGGTTGATCGTATGTAGTCTCACTCTCATTAATAATGCCTGTAACCCTTTAATTTTATATGTATATATACTTCATACAGTGTGAAAATGGGCCAACTAATCCTACAAAGATATTATTGATCTTCGGTGGCTTGCAATTTGAATACATTTGCCCTCTTTTGAGCTGGTTATGAATTGTTTTGGGCGATTTAGAAGCGCCTCCTATTTGTACTGTTTTCTTCTGTATTAAACGAAGCATAGAAGATTTAATCATGAGTTGGTTAGTGGTAAAAAAATGGCTACATAAATGATATGAGGCTTAGATGGAATGAGTTCATACCATGACGACCACCTACCTAGAATTTAATAACCTATAAGTTATCATAACAAACTAATATTGTAGGGTCAGATGAAAATGGTTGAGATGTGCACTAACCTTCACATATTAAAAAAAGGAAATATAGAATATCTTACTTTAGATAGAAAACAAATTCAGATGTAAATTTGGGGGGAGAGGGGAACTATGATTCTTGACATATTTTTTACTTGACCAATGAATACAATATAAGTCTTGTAGAGATAATGCGATAAGTGTAATGAAAAAGGAAAGATTAAATGTGAATGGACCGAGTGAAACACGTTAATGATGTATTTTATAGGAAACAAATGTTTACATTGATATATGAAATGAGTTGAGTAGAATTTTTTTCTGTGAAGCTATAACCACAAAAAAGAGGGAGACGGTGGCTCCAAAAAAAAGGAAAATAAGTTGTAGAATCCACGAAATCAACTGTAGTTGAGATATTTCCTTGAATATATGGTTATTTCTAGCCATCTAAATTCTCTAAAAAAATATAAAAGAAATTCCTCCATAGGTTTTCTTTTCTTGTTTAAAAGGATGCCCAAAAATGCATAGTATAGGAGAGTGTAGATGCTACCTGGTCGAGTCAATTCCAATCGAAAGCACTCTATATGAAGTCCCAAAAGACAGAAGCATATGGACTGCTGCTGAAAAAATCTGGCGTTGTGATTCTTCATATGAGTATATGACTATAACAAAGATGGCAGTATTGATGGGAGAGAGAAATCCATGGTGCCCTATTCTGATCTCTATAATTGCCCTGGAGTTAAAGCATGTCTTTGCTTCTATGACTTGTGATGCTATGATTTTCTTTTTCTTACTTGCGACCTCCATTCTAATAAACACGTGCATGTACATTTTCTGAGAAACTGTTGACCTAAAGTTCATGTTGAGTTCAATTTTAGTTCACTTCATTTCCTTTATTTTATGTTCTTACTCTTTTCACCTGCTCTAACATAAATCTTCCTTTTATTTTTTCTTCTTAGAAACAATATCTGTTATTACAAATGATGGCCGGAATATAGTGGTATGTTCACGAACTCTATCATCCAGATGACTGGTATCTCATCCATCCCATTAATGTTTATATTAATGGCACTTTATTCAGGGAGTGTTGAAAGGATTTGACCAGGCTACGAATATTATCCTCGATGAATCTCATGAACGTGTTTATTCAACCAAGGTTTGTATAATGACCATGTTGCTTGGATGAAATTTTCTACTATCTATTGCTCTTTCATTGACTGTTAGTTTTGACATAAATACTTCTTTCATTGACTATTTTATTTCTATCTATCATGTCAATGTGTTTGAATTTTCAGCTTGAAAAATTTCTCTTGCATGTACTATTTTGAATGTCTAATTTAATCTGCTTCTTCTTTCTGGGGAGTTCTGTTTTCTTATCCTTGAAGATAGGTTTAGTTGTGAAGTAGAATAATATATTTTTCTTCTTCTACTCCCTAATTCTTAGGAAACCTTACTACACCCAAGCTGATCTTTTCATTTCTGCTCATTTTAATTTCAACAGAGAATTTCATACTTAGCTGTTTGTTTGTATCTTTCGTTTATATTTGAAGTTGGAAAACGTGAGCCTACTTCAATTAAATACTATGATTTGAGATTTGAAAATCAGAAGAGATGCTAAAAGTATTTTAAATTTCATGATTGAAGTTCAATCTAGAGTTAATTGGTTTCACAATCTGGTAAGCCAGTGTGGCCACCTACACCTACCTAGGATTTAGTATCCTACGTATTTGACAATCATCTCTAGTGGGGCCAAGGCAACATAAAATAGTTGAGTTGTGCACTAGTTAATTTGAATACCAAAAATGATCTCATGATATCATGCCTTCTCATATACTGTAAACAATCCCATTGTTTCATCACTTTAGCTATGTAACCTTCCCTTCAAATTGGAGATATCATTTGTAATTCCTTCATTGTAGTTTTTCCGTCTTTTTTAATTTCATTTATCGATGAAATTGTTTCTTAACGAATAAAAAGCGAAATCATGCCCTCATGCTGAGATAGATTTCCTCCTCCTAAAGCTTGCTCTAGTTTGCTATCTCAATTCTATGCAATGGACAGTAGAAACATCTATAGTTTGCTTATGCCAATATTTAGATTCACAATTGGATGGTGCTCAGATTAACTGTATGCTTTAAAATATGGATTTTGGATGATGTCCAAGAAGATACTGATGTCGTGAAGTTAGGTTTTTAGATTTTTACCTCGCTTATTTGTCTTTATATATATAATAATAATAATTATTATTATTATTTAATCATCAGTTCCATAGTTAAAACAACCACTTGCATTTTCATATGGATTTAAATATCTTGTGAAAAGATCATCTTTCATGTGATTTTTGAATTTTGAATCTCACAATTTCTGACGATGGATTTAAGATTGTGCATATGTCCTTTGAATCCCATTTTTATAACTGGAGTTCTACTCTTAATCTGCAGGAAGGAGTTCAACAACTTGTTTTGGGTTTATATATAATCAGAGGCGACAATATGTAAGAGTTAGCTTGTCACTTTTAGATTATTTTATATATATATATATGAGTATTCAAGTCTGCTTACATGTATCTCAACTGTTTTTCACGGGACAATCTGTCTGACACTACAAATTTAATTGTCAAAAAATTCCAGAGAAAATTAAATCTTACGCAGGTGATCACCGTGAATTGAAAAAATCATAAGTTTTTAGATCTTTATGGCCCTCGATGACCACTAGGTTAACTCATGATGTTTACTCACGTATATATACAATGTTATTTTCACAATGTTTTGTAACTCATAATTTTGCTTATTCTGTGCAGAAGCATTGTTGGGGAGCTAGATGAGGAGCTTGATTCTAATCTGGACCTGTCCAAATTGAGAGCCCATCCTCTCAAGCCTGTGATTCATTAAGCAATAAGCGATGTTTATTTTGGGTTATGTTCGAGTAAAGCTGTTAATGTCTTTTGGCTTTAACCGTTGATCACATTTTACAGCTTTGTTTAGTTAGCAAGTATTGTTTAATGGCTATGAATATTAAAACATTTGAGATATTTAATATTTGTGGTTGAATATTCAAGGGAATTGCGACAAATCAAAAAGAAAATATTTAGAAATAAGATTTCTGTGTTTGCAGGTTTTGTGAACTCAAAACTACATTTATT

mRNA sequence

GGAACTCGTTTCGTTAATTTTATTACTTATGAGAAAAAACTCGTTAAAAAAAGAGAGAGAGAGATAGAGGGAAAAAGAGAAACCTAAACCCTTGCACCTTCTCTTCTTCTTCTACTTCTTCACGCCTGAACCTTTTCCCTTCCAGAGGTGAAGTGTCGCCGCCGCTTCCGCCGCCGCAATCCCGGTCAGCGCCTCCACTTTTGTCATCTTTCTTCCGCTCCTGCCGCCGCAGAGCGAGTTGCATTGTTTTTCTACTCACGTATCGTTGTTACTGAATCTAGCCGATCTGATTATACAGCACAAATCGTAGCTTGTTGTAAGGGTCTTCAATATGGAAAATGGGCCTGGACTTGAATCTTTGGTTGATCAAACAATATCTGTTATTACAAATGATGGCCGGAATATAGTGGGAGTGTTGAAAGGATTTGACCAGGCTACGAATATTATCCTCGATGAATCTCATGAACGTGTTTATTCAACCAAGGAAGGAGTTCAACAACTTGTTTTGGGTTTATATATAATCAGAGGCGACAATATAAGCATTGTTGGGGAGCTAGATGAGGAGCTTGATTCTAATCTGGACCTGTCCAAATTGAGAGCCCATCCTCTCAAGCCTGTGATTCATTAAGCAATAAGCGATGTTTATTTTGGGTTATGTTCGAGTAAAGCTGTTAATGTCTTTTGGCTTTAACCGTTGATCACATTTTACAGCTTTGTTTAGTTAGCAAGTATTGTTTAATGGCTATGAATATTAAAACATTTGAGATATTTAATATTTGTGGTTGAATATTCAAGGGAATTGCGACAAATCAAAAAGAAAATATTTAGAAATAAGATTTCTGTGTTTGCAGGTTTTGTGAACTCAAAACTACATTTATT

Coding sequence (CDS)

ATGGAAAATGGGCCTGGACTTGAATCTTTGGTTGATCAAACAATATCTGTTATTACAAATGATGGCCGGAATATAGTGGGAGTGTTGAAAGGATTTGACCAGGCTACGAATATTATCCTCGATGAATCTCATGAACGTGTTTATTCAACCAAGGAAGGAGTTCAACAACTTGTTTTGGGTTTATATATAATCAGAGGCGACAATATAAGCATTGTTGGGGAGCTAGATGAGGAGCTTGATTCTAATCTGGACCTGTCCAAATTGAGAGCCCATCCTCTCAAGCCTGTGATTCATTAA

Protein sequence

MENGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH

Homology

[Close]

BLAST of Sed0024889 vs. NCBI nr
Match: XP_042494798.1 (sm-like protein LSM8 [Macadamia integrifolia] >XP_042494806.1 sm-like protein LSM8 [Macadamia integrifolia] >XP_042494814.1 sm-like protein LSM8 [Macadamia integrifolia] >XP_042494822.1 sm-like protein LSM8 [Macadamia integrifolia])

HSP 1 Score: 192.6 bits (488), Expect = 1.6e-45
Identity = 95/98 (96.94%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MENGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          M +GPGLESLVDQTISVITNDGRNIVG+LKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MSSGPGLESLVDQTISVITNDGRNIVGILKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of Sed0024889 vs. NCBI nr
Match: XP_022155134.1 (sm-like protein LSM8 [Momordica charantia] >XP_022955136.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022955137.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022955138.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022955139.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022955140.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022994688.1 sm-like protein LSM8 [Cucurbita maxima] >XP_022994689.1 sm-like protein LSM8 [Cucurbita maxima] >XP_022994690.1 sm-like protein LSM8 [Cucurbita maxima] >XP_022994691.1 sm-like protein LSM8 [Cucurbita maxima] >XP_022994692.1 sm-like protein LSM8 [Cucurbita maxima] >XP_023541242.1 sm-like protein LSM8 [Cucurbita pepo subsp. pepo] >XP_023541244.1 sm-like protein LSM8 [Cucurbita pepo subsp. pepo] >XP_023541245.1 sm-like protein LSM8 [Cucurbita pepo subsp. pepo] >XP_023541246.1 sm-like protein LSM8 [Cucurbita pepo subsp. pepo] >XP_038893733.1 sm-like protein LSM8 isoform X1 [Benincasa hispida] >XP_038893734.1 sm-like protein LSM8 isoform X1 [Benincasa hispida] >XP_038893735.1 sm-like protein LSM8 isoform X1 [Benincasa hispida] >KAG6573000.1 Sm-like protein LSM8, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012184.1 Sm-like protein LSM8, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 192.6 bits (488), Expect = 1.6e-45
Identity = 96/98 (97.96%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MENGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          M +GPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of Sed0024889 vs. NCBI nr
Match: XP_011621662.1 (sm-like protein LSM8 isoform X1 [Amborella trichopoda] >XP_020520001.1 sm-like protein LSM8 isoform X1 [Amborella trichopoda] >XP_020520002.1 sm-like protein LSM8 isoform X1 [Amborella trichopoda] >ERN01583.1 hypothetical protein AMTR_s00002p00272060 [Amborella trichopoda])

HSP 1 Score: 191.8 bits (486), Expect = 2.8e-45
Identity = 93/98 (94.90%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MENGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          M +GPGLESLVDQTISVITNDGRNIVG+LKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MSSGPGLESLVDQTISVITNDGRNIVGILKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNIS++GELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISVIGELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of Sed0024889 vs. NCBI nr
Match: XP_004137538.1 (sm-like protein LSM8 [Cucumis sativus] >XP_008437171.1 PREDICTED: sm-like protein LSM8 [Cucumis melo] >XP_008437187.1 PREDICTED: sm-like protein LSM8 [Cucumis melo] >XP_016901717.1 PREDICTED: sm-like protein LSM8 [Cucumis melo] >XP_031736453.1 sm-like protein LSM8 [Cucumis sativus] >XP_031736454.1 sm-like protein LSM8 [Cucumis sativus] >KGN64224.1 hypothetical protein Csa_014109 [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 3.6e-45
Identity = 95/98 (96.94%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MENGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          M +GPGL+SLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of Sed0024889 vs. NCBI nr
Match: KAG0463006.1 (hypothetical protein HPP92_021482 [Vanilla planifolia])

HSP 1 Score: 191.0 bits (484), Expect = 4.7e-45
Identity = 93/98 (94.90%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1   MENGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
           M +GPGLESLVDQTISVITNDGRNIVG+LKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 84  MSSGPGLESLVDQTISVITNDGRNIVGILKGFDQATNIILDESHERVYSTKEGVQQLVLG 143

Query: 61  LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
           LYIIRGDNIS+VGELDEELD+NLDLSKLRAHPLKPVIH
Sbjct: 144 LYIIRGDNISVVGELDEELDANLDLSKLRAHPLKPVIH 181

[Close]

BLAST of Sed0024889 vs. ExPASy Swiss-Prot
Match: Q8VYI0 (Sm-like protein LSM8 OS=Arabidopsis thaliana OX=3702 GN=LSM8 PE=1 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 8.6e-42
Identity = 82/93 (88.17%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 6  GLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIR 65
          GLE+LVDQ ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STKEGVQQ VLGLYIIR
Sbjct: 6  GLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYIIR 65

Query: 66 GDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          GDNI ++GELDEELD++LD SKLRAHPLKPV+H
Sbjct: 66 GDNIGVIGELDEELDASLDFSKLRAHPLKPVVH 98

[Close]

BLAST of Sed0024889 vs. ExPASy Swiss-Prot
Match: Q3ZCE0 (U6 snRNA-associated Sm-like protein LSm8 OS=Bos taurus OX=9913 GN=LSM8 PE=3 SV=3)

HSP 1 Score: 132.5 bits (332), Expect = 2.6e-30
Identity = 58/92 (63.04%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 7  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
          LE+ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RG
Sbjct: 5  LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64

Query: 67 DNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          DN++++GE+DEE DS LDL  +RA PL  V H
Sbjct: 65 DNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96

[Close]

BLAST of Sed0024889 vs. ExPASy Swiss-Prot
Match: O95777 (U6 snRNA-associated Sm-like protein LSm8 OS=Homo sapiens OX=9606 GN=LSM8 PE=1 SV=3)

HSP 1 Score: 132.5 bits (332), Expect = 2.6e-30
Identity = 58/92 (63.04%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 7  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
          LE+ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RG
Sbjct: 5  LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64

Query: 67 DNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          DN++++GE+DEE DS LDL  +RA PL  V H
Sbjct: 65 DNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96

[Close]

BLAST of Sed0024889 vs. ExPASy Swiss-Prot
Match: Q6ZWM4 (U6 snRNA-associated Sm-like protein LSm8 OS=Mus musculus OX=10090 GN=Lsm8 PE=1 SV=3)

HSP 1 Score: 132.5 bits (332), Expect = 2.6e-30
Identity = 58/92 (63.04%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 7  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
          LE+ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RG
Sbjct: 5  LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64

Query: 67 DNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          DN++++GE+DEE DS LDL  +RA PL  V H
Sbjct: 65 DNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96

[Close]

BLAST of Sed0024889 vs. ExPASy Swiss-Prot
Match: Q5RCP3 (U6 snRNA-associated Sm-like protein LSm8 OS=Pongo abelii OX=9601 GN=LSM8 PE=3 SV=3)

HSP 1 Score: 132.5 bits (332), Expect = 2.6e-30
Identity = 58/92 (63.04%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 7  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
          LE+ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RG
Sbjct: 5  LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64

Query: 67 DNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          DN++++GE+DEE DS LDL  +RA PL  V H
Sbjct: 65 DNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96

[Close]

BLAST of Sed0024889 vs. ExPASy TrEMBL
Match: A0A6J1K221 (U6 snRNA-associated Sm-like protein LSm8 OS=Cucurbita maxima OX=3661 GN=LOC111490340 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 7.8e-46
Identity = 96/98 (97.96%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MENGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          M +GPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of Sed0024889 vs. ExPASy TrEMBL
Match: A0A6J1GT46 (U6 snRNA-associated Sm-like protein LSm8 OS=Cucurbita moschata OX=3662 GN=LOC111457194 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 7.8e-46
Identity = 96/98 (97.96%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MENGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          M +GPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of Sed0024889 vs. ExPASy TrEMBL
Match: A0A6J1DPC5 (U6 snRNA-associated Sm-like protein LSm8 OS=Momordica charantia OX=3673 GN=LOC111022273 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 7.8e-46
Identity = 96/98 (97.96%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MENGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          M +GPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of Sed0024889 vs. ExPASy TrEMBL
Match: W1P0W8 (U6 snRNA-associated Sm-like protein LSm8 OS=Amborella trichopoda OX=13333 GN=LSM8 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.3e-45
Identity = 93/98 (94.90%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MENGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          M +GPGLESLVDQTISVITNDGRNIVG+LKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MSSGPGLESLVDQTISVITNDGRNIVGILKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNIS++GELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISVIGELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of Sed0024889 vs. ExPASy TrEMBL
Match: A0A1S3ATI1 (U6 snRNA-associated Sm-like protein LSm8 OS=Cucumis melo OX=3656 GN=LOC103482675 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.7e-45
Identity = 95/98 (96.94%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MENGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          M +GPGL+SLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of Sed0024889 vs. TAIR 10
Match: AT1G65700.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 170.6 bits (431), Expect = 6.1e-43
Identity = 82/93 (88.17%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 6  GLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIR 65
          GLE+LVDQ ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STKEGVQQ VLGLYIIR
Sbjct: 6  GLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYIIR 65

Query: 66 GDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          GDNI ++GELDEELD++LD SKLRAHPLKPV+H
Sbjct: 66 GDNIGVIGELDEELDASLDFSKLRAHPLKPVVH 98

[Close]

BLAST of Sed0024889 vs. TAIR 10
Match: AT1G65700.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 170.6 bits (431), Expect = 6.1e-43
Identity = 82/93 (88.17%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 6  GLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIR 65
          GLE+LVDQ ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STKEGVQQ VLGLYIIR
Sbjct: 6  GLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYIIR 65

Query: 66 GDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          GDNI ++GELDEELD++LD SKLRAHPLKPV+H
Sbjct: 66 GDNIGVIGELDEELDASLDFSKLRAHPLKPVVH 98

[Close]

BLAST of Sed0024889 vs. TAIR 10
Match: AT1G65700.3 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 149.8 bits (377), Expect = 1.1e-36
Identity = 82/136 (60.29%), Postives = 89/136 (65.44%), Query Frame = 0


Query: 6   GLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK-------------- 65
           GLE+LVDQ ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STK              
Sbjct: 6   GLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKCHLFNRILRKLTQI 65

Query: 66  -----------------------------EGVQQLVLGLYIIRGDNISIVGELDEELDSN 99
                                        EGVQQ VLGLYIIRGDNI ++GELDEELD++
Sbjct: 66  FKIGLVLQFFVCMSGHVDTSLDKCSWIFLEGVQQHVLGLYIIRGDNIGVIGELDEELDAS 125

[Close]

BLAST of Sed0024889 vs. TAIR 10
Match: AT1G19120.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-11
Identity = 31/72 (43.06%), Postives = 50/72 (69.44%), Query Frame = 0


Query: 7  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
          L + +D+ + V+  DGR ++G+L+ FDQ  N +L+E++ERV    +    + LGLYIIRG
Sbjct: 15 LAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVI-VGDLYCDIPLGLYIIRG 74

Query: 67 DNISIVGELDEE 79
          +N+ ++GELD E
Sbjct: 75 ENVVLIGELDVE 85

[Close]

BLAST of Sed0024889 vs. TAIR 10
Match: AT3G14080.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 64.7 bits (156), Expect = 4.7e-11
Identity = 31/72 (43.06%), Postives = 47/72 (65.28%), Query Frame = 0


Query: 7  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
          L S +D+ + V+  DGR ++G L+ FDQ  N +L+ + ERV    E    + LGLY+IRG
Sbjct: 15 LASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVI-VGEQYCDIPLGLYVIRG 74

Query: 67 DNISIVGELDEE 79
          +N+ ++GELD E
Sbjct: 75 ENVVLIGELDTE 85

The following BLAST results are available for this feature:

BLAST of Sed0024889 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_042494798.1	1.6e-45	96.94	sm-like protein LSM8 [Macadamia integrifolia] >XP_042494806.1 sm-like protein LS...	[more]
XP_022155134.1	1.6e-45	97.96	sm-like protein LSM8 [Momordica charantia] >XP_022955136.1 sm-like protein LSM8 ...	[more]
XP_011621662.1	2.8e-45	94.90	sm-like protein LSM8 isoform X1 [Amborella trichopoda] >XP_020520001.1 sm-like p...	[more]
XP_004137538.1	3.6e-45	96.94	sm-like protein LSM8 [Cucumis sativus] >XP_008437171.1 PREDICTED: sm-like protei...	[more]
KAG0463006.1	4.7e-45	94.90	hypothetical protein HPP92_021482 [Vanilla planifolia]	[more]

BLAST of Sed0024889 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VYI0	8.6e-42	88.17	Sm-like protein LSM8 OS=Arabidopsis thaliana OX=3702 GN=LSM8 PE=1 SV=1	[more]
Q3ZCE0	2.6e-30	63.04	U6 snRNA-associated Sm-like protein LSm8 OS=Bos taurus OX=9913 GN=LSM8 PE=3 SV=3	[more]
O95777	2.6e-30	63.04	U6 snRNA-associated Sm-like protein LSm8 OS=Homo sapiens OX=9606 GN=LSM8 PE=1 SV...	[more]
Q6ZWM4	2.6e-30	63.04	U6 snRNA-associated Sm-like protein LSm8 OS=Mus musculus OX=10090 GN=Lsm8 PE=1 S...	[more]
Q5RCP3	2.6e-30	63.04	U6 snRNA-associated Sm-like protein LSm8 OS=Pongo abelii OX=9601 GN=LSM8 PE=3 SV...	[more]

BLAST of Sed0024889 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K221	7.8e-46	97.96	U6 snRNA-associated Sm-like protein LSm8 OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1GT46	7.8e-46	97.96	U6 snRNA-associated Sm-like protein LSm8 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1DPC5	7.8e-46	97.96	U6 snRNA-associated Sm-like protein LSm8 OS=Momordica charantia OX=3673 GN=LOC11...	[more]
W1P0W8	1.3e-45	94.90	U6 snRNA-associated Sm-like protein LSm8 OS=Amborella trichopoda OX=13333 GN=LSM...	[more]
A0A1S3ATI1	1.7e-45	96.94	U6 snRNA-associated Sm-like protein LSm8 OS=Cucumis melo OX=3656 GN=LOC103482675...	[more]

BLAST of Sed0024889 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G65700.1	6.1e-43	88.17	Small nuclear ribonucleoprotein family protein	[more]
AT1G65700.2	6.1e-43	88.17	Small nuclear ribonucleoprotein family protein	[more]
AT1G65700.3	1.1e-36	60.29	Small nuclear ribonucleoprotein family protein	[more]
AT1G19120.1	1.2e-11	43.06	Small nuclear ribonucleoprotein family protein	[more]
AT3G14080.1	4.7e-11	43.06	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 5..74 e-value: 4.7E-17 score: 72.7
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 7..73 e-value: 8.8E-18 score: 63.8
None	No IPR available	GENE3D	2.30.30.100		coord: 6..97 e-value: 1.7E-26 score: 94.4
None	No IPR available	PANTHER	PTHR15588:SF9	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM8	coord: 5..98
IPR044642	U6 snRNA-associated Sm-like protein Lsm1/8	PANTHER	PTHR15588	LSM1	coord: 5..98
IPR034103	Sm-like protein Lsm8	CDD	cd01727	LSm8	coord: 5..94 e-value: 1.58698E-46 score: 142.28
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 6..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0024889.1	Sed0024889.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:0005688	U6 snRNP
molecular_function	GO:0003723	RNA binding