Sed0024787 (gene) Chayote v1

Overview


Name	Sed0024787
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING-type E3 ubiquitin transferase
Location	LG07: 41386064 .. 41387779 (-)
RNA-Seq Expression	Sed0024787
Synteny	Sed0024787

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTATTTAATCTCAGAAAAAAAAAGAAAAGAAAAAAAAACTCTCCCAAAAACCTTTCTCCTTTCTCCTCCTCTTTTCCCCTCCGCCGCGAAAATTCCCCGGCCACCGTCATCGCCGCCGCAGATACTCTCCAGCGGCCGTCTGTTTGATGAATCTCCGGTCGAAATGGCGACAACCCAATTCTCTCCGTCGGACCACTGGCACTTCACGGAGCTCGACGACCGGATCTTCCAAATCCGCGGCCGGACTTTCTTCTTCATCGCCGTTTTATTCGCCGTCATCCTTCTGGTAACTTTCATCTTCCTTTACGCCCGTTGGGTCTGCCGATTTCATAGCCTCACCGCCATCTCCGCCGCCGTGCCAGGCGGCCGGGCGACCAGGCCGCCGCCGCAGCAGGGGCTCGATCAGGCGGCTATTAACTGCCTGCCGATCACTTTGCACAGAGCGGCGGCGGAGGGCGACGGCGGCGCCGCCGCGTCGGAGTGCTGTATCTGTTTGGGGGTGTTTGAGGATGGGGAGAAGGTTAAGATTCTGCCGGAGTGCCGCCATTGTTACCACTCCGATTGCGTCGACCTGTGGCTCCGGTCACAGCCCAGCTGCCCGCTTTGCCGCGTCTCTCTCCATGTCAATACCTCAAATAATCTTCAAATGGTTTGAGTCTTAATTTGAATTTACACTCTCAATTATCTGATTTTCCAAATTAGAACTCAGAAGCTTTTATCTGTGATATGTTCATGTAAATTTAGTTCTTTATTGCAATTAGAAGGGAAATAAGCACTTAATTAGTTTTAGGTGTGGCCTAAAAATAGTTGAAACAAGCTTAAGCTGACAATATCGAAAGGTGGGTGCTCCTATTAATTTTATTGTTGGATGATAATTCAATTTAACACTACGAATTCTTCTCTGTGAGTTTGTGGTCACTCCCCAATTTAAGCTTAAAAAAAGCACACCCTCTCTATTAGTTTAAGTGTTTTTTAATTTTTCAAATGTGTGAAAAGTGAAGTACTATTAATATGAAGATGAGTTGGTCTGGTATAAAAAAAAGACATTAAAAATCAAGAGGCAATGGTTGAGTTCATAGTTATCACTATTTAAAAAATTAATTTTTACGAATTTTCTTTACATCCAAATATAATAAAGTTGAATGTATGTTGTGTAAGAATGTAAAAATAGTCAAGATGTGCGTAATTAGATATTTTTGGTTTAATATATGTGTGAATAAGGTGGTGAATGTTCTCCATATCATTTTGATGTTTTGGGAATTGTTGGTTTTTAGTATGTCTTCCTATTGAAGAGAAATGAAGATTCAAAATTGGATAATTCTTTCAAGGGTTTTTTGGGCAGTTGTGTACATGAAGCAGGCATGTATTGGATATAACTTTTCACTGGCTAACATGTGGAAGATACCAAAAAGCTGCCCAAAAAAAGAAAAGAAAAAGATGGAAAGAATATTGAGTTTAAAGGTATGTCAAATTAGGGGATAAATCATTTGATTATGAGAGAGAATGAACATTACAATACAAGCGACAAAGTTTCACAATTTGCCTTTACATAGTTGTTGGTAAGAGTGAGGAATATTTGGGAATCTAGACCTTGAGATGTTGATTCTTCAACTTTTATTGCAATGTTTGTAATGGATAGCACAACATAAATGGAGAATGTTCGGTGTGTAATTCTATCGACAAGTATATTTGCACTTTAACTATTTTTATAGGAC

mRNA sequence

ATTATTTAATCTCAGAAAAAAAAAGAAAAGAAAAAAAAACTCTCCCAAAAACCTTTCTCCTTTCTCCTCCTCTTTTCCCCTCCGCCGCGAAAATTCCCCGGCCACCGTCATCGCCGCCGCAGATACTCTCCAGCGGCCGTCTGTTTGATGAATCTCCGGTCGAAATGGCGACAACCCAATTCTCTCCGTCGGACCACTGGCACTTCACGGAGCTCGACGACCGGATCTTCCAAATCCGCGGCCGGACTTTCTTCTTCATCGCCGTTTTATTCGCCGTCATCCTTCTGGTAACTTTCATCTTCCTTTACGCCCGTTGGGTCTGCCGATTTCATAGCCTCACCGCCATCTCCGCCGCCGTGCCAGGCGGCCGGGCGACCAGGCCGCCGCCGCAGCAGGGGCTCGATCAGGCGGCTATTAACTGCCTGCCGATCACTTTGCACAGAGCGGCGGCGGAGGGCGACGGCGGCGCCGCCGCGTCGGAGTGCTGTATCTGTTTGGGGGTGTTTGAGGATGGGGAGAAGGTTAAGATTCTGCCGGAGTGCCGCCATTGTTACCACTCCGATTGCGTCGACCTGTGGCTCCGGTCACAGCCCAGCTGCCCGCTTTGCCGCGTCTCTCTCCATGTCAATACCTCAAATAATCTTCAAATGTTGTGTACATGAAGCAGGCATGTATTGGATATAACTTTTCACTGGCTAACATGTGGAAGATACCAAAAAGCTGCCCAAAAAAAGAAAAGAAAAAGATGGAAAGAATATTGAGTTTAAAGGTATGTCAAATTAGGGGATAAATCATTTGATTATGAGAGAGAATGAACATTACAATACAAGCGACAAAGTTTCACAATTTGCCTTTACATAGTTGTTGGTAAGAGTGAGGAATATTTGGGAATCTAGACCTTGAGATGTTGATTCTTCAACTTTTATTGCAATGTTTGTAATGGATAGCACAACATAAATGGAGAATGTTCGGTGTGTAATTCTATCGACAAGTATATTTGCACTTTAACTATTTTTATAGGAC

Coding sequence (CDS)

ATGGCGACAACCCAATTCTCTCCGTCGGACCACTGGCACTTCACGGAGCTCGACGACCGGATCTTCCAAATCCGCGGCCGGACTTTCTTCTTCATCGCCGTTTTATTCGCCGTCATCCTTCTGGTAACTTTCATCTTCCTTTACGCCCGTTGGGTCTGCCGATTTCATAGCCTCACCGCCATCTCCGCCGCCGTGCCAGGCGGCCGGGCGACCAGGCCGCCGCCGCAGCAGGGGCTCGATCAGGCGGCTATTAACTGCCTGCCGATCACTTTGCACAGAGCGGCGGCGGAGGGCGACGGCGGCGCCGCCGCGTCGGAGTGCTGTATCTGTTTGGGGGTGTTTGAGGATGGGGAGAAGGTTAAGATTCTGCCGGAGTGCCGCCATTGTTACCACTCCGATTGCGTCGACCTGTGGCTCCGGTCACAGCCCAGCTGCCCGCTTTGCCGCGTCTCTCTCCATGTCAATACCTCAAATAATCTTCAAATGTTGTGTACATGA

Protein sequence

MATTQFSPSDHWHFTELDDRIFQIRGRTFFFIAVLFAVILLVTFIFLYARWVCRFHSLTAISAAVPGGRATRPPPQQGLDQAAINCLPITLHRAAAEGDGGAAASECCICLGVFEDGEKVKILPECRHCYHSDCVDLWLRSQPSCPLCRVSLHVNTSNNLQMLCT

Homology

[Close]

BLAST of Sed0024787 vs. NCBI nr
Match: XP_023511628.1 (RING-H2 finger protein ATL66-like [Cucurbita pepo subsp. pepo] >XP_023511760.1 RING-H2 finger protein ATL66-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 258.5 bits (659), Expect = 4.0e-65
Identity = 126/164 (76.83%), Postives = 138/164 (84.15%), Query Frame = 0


Query: 1   MATTQFSPSDHWHFTELDDRIFQIRGRTFFFIAVLFAVILLVTFIFLYARWVCRFHSLTA 60
           MAT Q  PS HWHFTELDDRIFQIRGRTFFFIAVLFAVILLVTFIFLYARWVCR+HSLT 
Sbjct: 1   MATLQAPPSVHWHFTELDDRIFQIRGRTFFFIAVLFAVILLVTFIFLYARWVCRYHSLTT 60

Query: 61  ISAAVPGGRATRPPPQQGLDQAAINCLPITLHRAAAEGDGGAAASECCICLGVFEDGEKV 120
            SA+VPG R++R PPQQGLDQA INC  ITL++AA E D  A A+ECCICLGVFEDGEKV
Sbjct: 61  FSASVPGVRSSRSPPQQGLDQATINCQSITLYKAAEEVDAAATAAECCICLGVFEDGEKV 120

Query: 121 KILPECRHCYHSDCVDLWLRSQPSCPLCRVSLH-VNTSNNLQML 164
           KIL  C HC+HS+CVD WLR Q SCPLCR+SL   + SNNLQM+
Sbjct: 121 KILALCHHCFHSECVDQWLRLQSSCPLCRISLRAADNSNNLQMV 164

[Close]

BLAST of Sed0024787 vs. NCBI nr
Match: KAG6599982.1 (RING-H2 finger protein ATL66, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 256.5 bits (654), Expect = 1.5e-64
Identity = 125/164 (76.22%), Postives = 137/164 (83.54%), Query Frame = 0


Query: 1   MATTQFSPSDHWHFTELDDRIFQIRGRTFFFIAVLFAVILLVTFIFLYARWVCRFHSLTA 60
           MAT Q  PS HWHFTELDDRIFQIRGRTFFFIAVLFAVILLVTFIFLYARWVCR+HSLT 
Sbjct: 1   MATLQAPPSVHWHFTELDDRIFQIRGRTFFFIAVLFAVILLVTFIFLYARWVCRYHSLTT 60

Query: 61  ISAAVPGGRATRPPPQQGLDQAAINCLPITLHRAAAEGDGGAAASECCICLGVFEDGEKV 120
             A+VPG R++R PPQQGLDQA INC  ITL++AA E D  A A+ECCICLGVFEDGEKV
Sbjct: 61  FPASVPGVRSSRSPPQQGLDQATINCQSITLYKAAEEVDAAATAAECCICLGVFEDGEKV 120

Query: 121 KILPECRHCYHSDCVDLWLRSQPSCPLCRVSLH-VNTSNNLQML 164
           KIL  C HC+HS+CVD WLR Q SCPLCR+SL   + SNNLQM+
Sbjct: 121 KILALCHHCFHSECVDQWLRLQSSCPLCRISLRAADNSNNLQMV 164

[Close]

BLAST of Sed0024787 vs. NCBI nr
Match: XP_038892868.1 (RING-H2 finger protein ATL66-like [Benincasa hispida])

HSP 1 Score: 256.5 bits (654), Expect = 1.5e-64
Identity = 128/167 (76.65%), Postives = 140/167 (83.83%), Query Frame = 0


Query: 1   MATTQFSPSDHWHFTELDDRIFQIRGRTFFFIAVLFAVILLVTFIFLYARWVCRFHSLTA 60
           MAT+Q  PS  WHFTELDDR+FQIRGRTFFF+AVLFA+ILLVTFIFLYARWVCRFH LT 
Sbjct: 1   MATSQVPPSVTWHFTELDDRLFQIRGRTFFFVAVLFAIILLVTFIFLYARWVCRFHQLTT 60

Query: 61  ISAAVPGGRATRPPPQQGLDQAAINCLPITLHRA-AAEGDGG---AAASECCICLGVFED 120
             AAVPGGR  R PPQQGL+  AINCLPI+L++A  AE D     AAA EC ICLGVFED
Sbjct: 61  FPAAVPGGRPPRSPPQQGLNPTAINCLPISLYKAPPAEEDPRATVAAAGECSICLGVFED 120

Query: 121 GEKVKILPECRHCYHSDCVDLWLRSQPSCPLCRVSLHVNTSNNLQML 164
           GEKVKILP CRHCYHS+CVD WLRSQ SCPLCRVSL ++TSNNLQM+
Sbjct: 121 GEKVKILPLCRHCYHSECVDRWLRSQSSCPLCRVSLCIDTSNNLQMV 167

[Close]

BLAST of Sed0024787 vs. NCBI nr
Match: XP_022942690.1 (RING-H2 finger protein ATL66 [Cucurbita moschata])

HSP 1 Score: 256.5 bits (654), Expect = 1.5e-64
Identity = 125/164 (76.22%), Postives = 138/164 (84.15%), Query Frame = 0


Query: 1   MATTQFSPSDHWHFTELDDRIFQIRGRTFFFIAVLFAVILLVTFIFLYARWVCRFHSLTA 60
           MAT Q  PS HWHFTELDDRIFQIRGRTFFFIAVLFAVILLVTFIFLYARWVCR+HSLT 
Sbjct: 1   MATLQAPPSVHWHFTELDDRIFQIRGRTFFFIAVLFAVILLVTFIFLYARWVCRYHSLTT 60

Query: 61  ISAAVPGGRATRPPPQQGLDQAAINCLPITLHRAAAEGDGGAAASECCICLGVFEDGEKV 120
            SA+VPG R++R PPQQGLDQA INC  ITL++AA E D  A A+ECCICLGVFEDGEKV
Sbjct: 61  FSASVPGVRSSRSPPQQGLDQATINCQSITLYKAAEEVDAAATAAECCICLGVFEDGEKV 120

Query: 121 KILPECRHCYHSDCVDLWLRSQPSCPLCRVSLH-VNTSNNLQML 164
           KIL  C HC+HS+CVD WLR Q SCPLCR+SL   + S+NLQM+
Sbjct: 121 KILALCHHCFHSECVDQWLRLQSSCPLCRISLRAADNSSNLQMV 164

[Close]

BLAST of Sed0024787 vs. NCBI nr
Match: XP_022996486.1 (RING-H2 finger protein ATL66 [Cucurbita maxima])

HSP 1 Score: 248.8 bits (634), Expect = 3.2e-62
Identity = 125/169 (73.96%), Postives = 137/169 (81.07%), Query Frame = 0


Query: 1   MATTQFSPSDHWHFTELDDRIFQIRGRTFFFIAVLFAVILLVTFIFLYARWVCRFHSLTA 60
           MAT Q  PS HWHFTELDDRIFQIRGRT FFIAVLFAVILLVTFIFLYARWVCR+HSL  
Sbjct: 47  MATLQAPPSVHWHFTELDDRIFQIRGRTIFFIAVLFAVILLVTFIFLYARWVCRYHSLMT 106

Query: 61  ISAAVPGGRATRPPPQQGLDQAAINCLPITLHRAAAEGDGGAA-----ASECCICLGVFE 120
            S AVPG R++R PPQQGLDQAAINC PITL++ AA  +  AA     A+ECCICLGVFE
Sbjct: 107 FSTAVPGVRSSRSPPQQGLDQAAINCQPITLYKEAAAVEEAAATPAATAAECCICLGVFE 166

Query: 121 DGEKVKILPECRHCYHSDCVDLWLRSQPSCPLCRVSLH-VNTSNNLQML 164
           DGEKVKIL  C HC+HS+CVD WLR Q SCPLCR+SL   + SNNLQM+
Sbjct: 167 DGEKVKILALCHHCFHSECVDQWLRLQSSCPLCRISLRAADNSNNLQMV 215

[Close]

BLAST of Sed0024787 vs. ExPASy Swiss-Prot
Match: Q9SRM0 (RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.7e-29
Identity = 71/149 (47.65%), Postives = 91/149 (61.07%), Query Frame = 0


Query: 11  HWHFTELDDRIFQIRGRTFFFIAVLFAVILLVTFIFLYARWVCRFHSLTAISAAVPGGRA 70
           +WH  + DDR FQI GRT FF   LF+V+L    + LY    C       + A+ P  R 
Sbjct: 15  YWHENQYDDRNFQIHGRTLFFALALFSVVLFFALLTLYIHRNCLPRDSINLHASSP-DRL 74

Query: 71  TRPPPQQGLDQAAINCLPITL-HRAAAEGDGGAAASECCICLGVFEDGEKVKILPECRHC 130
           TR     GLD A I  LP+ L  R  AE +      ECCICLG FE+GEK+K+LP C HC
Sbjct: 75  TR-CRSGGLDPAEIRSLPVVLCRRERAEEE---EEKECCICLGGFEEGEKMKVLPPCSHC 134

Query: 131 YHSDCVDLWLRSQPSCPLCRVSLHVNTSN 159
           YH +CVD WL+++ SCPLCRVS+ V++S+
Sbjct: 135 YHCECVDRWLKTESSCPLCRVSIRVDSSS 158

[Close]

BLAST of Sed0024787 vs. ExPASy Swiss-Prot
Match: Q7XLY8 (E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2)

HSP 1 Score: 86.3 bits (212), Expect = 3.6e-16
Identity = 33/78 (42.31%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 75  PQQGLDQAAINCLPITLHRAAAEGDGGAAASECCICLGVFEDGEKVKILPECRHCYHSDC 134
           P  GLD+  IN + +  +R    GDG    ++C +CLG F DGE +++LP C H +H  C
Sbjct: 128 PPSGLDETLINKITVCKYR---RGDGFVHTTDCSVCLGEFSDGESLRLLPRCSHAFHQQC 187

Query: 135 VDLWLRSQPSCPLCRVSL 153
           +D WL+S  +CPLCR ++
Sbjct: 188 IDTWLKSHSNCPLCRANI 202

[Close]

BLAST of Sed0024787 vs. ExPASy Swiss-Prot
Match: P93823 (RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.3e-15
Identity = 34/91 (37.36%), Postives = 55/91 (60.44%), Query Frame = 0


Query: 77  QGLDQAAINCLPITLHR----AAAEGDGGAAASECCICLGVFEDGEKVKILPECRHCYHS 136
           +GLD++AI  +P+   +     A E D    + EC +CL  F++ EK++I+P C H +H 
Sbjct: 100 RGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHI 159

Query: 137 DCVDLWLRSQPSCPLCRVSLHVNTSNNLQML 164
           DC+D+WL+   +CPLCR S+    S  L ++
Sbjct: 160 DCIDIWLQGNANCPLCRTSVSCEASFTLDLI 190

[Close]

BLAST of Sed0024787 vs. ExPASy Swiss-Prot
Match: Q8L9T5 (RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2)

HSP 1 Score: 82.8 bits (203), Expect = 4.0e-15
Identity = 46/131 (35.11%), Postives = 63/131 (48.09%), Query Frame = 0


Query: 32  IAVLFAVILLVTFIFLYARWVC----RFH---------SLTAISAAVPGGRATRPPPQQG 91
           I +LF V++L+ F+ LYARW      R H         +      A P   AT     +G
Sbjct: 35  IVILFFVVILMVFLHLYARWYLLRARRRHLRRRSRNRRATMVFFTADPSTAATSVVASRG 94

Query: 92  LDQAAINCLPITLHRAAAEGDGGAAASECCICLGVFEDGEKVKILPECRHCYHSDCVDLW 150
           LD   I  LP+         D      EC +CL  FE+ E  ++LP C+H +H DC+D+W
Sbjct: 95  LDPNVIKSLPVFTFSDETHKD----PIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMW 154

[Close]

BLAST of Sed0024787 vs. ExPASy Swiss-Prot
Match: O64762 (RING-H2 finger protein ATL38 OS=Arabidopsis thaliana OX=3702 GN=ATL38 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-14
Identity = 45/128 (35.16%), Postives = 66/128 (51.56%), Query Frame = 0


Query: 28  TFFFIAVLFAVILLVTFIFLYARWVCR-FHSLTAISAAVPGGRATRP--PPQQGLDQAAI 87
           T   I ++   I +V    +  RW  R F+S  +I+        +R      +GLD+A I
Sbjct: 14  TLLVITIILFAIFIVGLASVCFRWTSRQFYSQESINPFTDSDVESRTSITAVRGLDEAII 73

Query: 88  NCLPITLHRAAAEGDGGAAASECCICLGVFEDGEKVKILPECRHCYHSDCVDLWLRSQPS 147
           N  P  L+    E   G    EC +C+  FED E ++++PEC H +H+DCV +WL    +
Sbjct: 74  NSFPTFLYSEVKERRIGIGGVECAVCICEFEDHETLRLMPECCHVFHADCVSVWLSDHST 133

Query: 148 CPLCRVSL 153
           CPLCRV L
Sbjct: 134 CPLCRVDL 141

[Close]

BLAST of Sed0024787 vs. ExPASy TrEMBL
Match: A0A6J1FWS0 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111447649 PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 7.4e-65
Identity = 125/164 (76.22%), Postives = 138/164 (84.15%), Query Frame = 0


Query: 1   MATTQFSPSDHWHFTELDDRIFQIRGRTFFFIAVLFAVILLVTFIFLYARWVCRFHSLTA 60
           MAT Q  PS HWHFTELDDRIFQIRGRTFFFIAVLFAVILLVTFIFLYARWVCR+HSLT 
Sbjct: 1   MATLQAPPSVHWHFTELDDRIFQIRGRTFFFIAVLFAVILLVTFIFLYARWVCRYHSLTT 60

Query: 61  ISAAVPGGRATRPPPQQGLDQAAINCLPITLHRAAAEGDGGAAASECCICLGVFEDGEKV 120
            SA+VPG R++R PPQQGLDQA INC  ITL++AA E D  A A+ECCICLGVFEDGEKV
Sbjct: 61  FSASVPGVRSSRSPPQQGLDQATINCQSITLYKAAEEVDAAATAAECCICLGVFEDGEKV 120

Query: 121 KILPECRHCYHSDCVDLWLRSQPSCPLCRVSLH-VNTSNNLQML 164
           KIL  C HC+HS+CVD WLR Q SCPLCR+SL   + S+NLQM+
Sbjct: 121 KILALCHHCFHSECVDQWLRLQSSCPLCRISLRAADNSSNLQMV 164

[Close]

BLAST of Sed0024787 vs. ExPASy TrEMBL
Match: A0A6J1K4V5 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111491716 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.6e-62
Identity = 125/169 (73.96%), Postives = 137/169 (81.07%), Query Frame = 0


Query: 1   MATTQFSPSDHWHFTELDDRIFQIRGRTFFFIAVLFAVILLVTFIFLYARWVCRFHSLTA 60
           MAT Q  PS HWHFTELDDRIFQIRGRT FFIAVLFAVILLVTFIFLYARWVCR+HSL  
Sbjct: 47  MATLQAPPSVHWHFTELDDRIFQIRGRTIFFIAVLFAVILLVTFIFLYARWVCRYHSLMT 106

Query: 61  ISAAVPGGRATRPPPQQGLDQAAINCLPITLHRAAAEGDGGAA-----ASECCICLGVFE 120
            S AVPG R++R PPQQGLDQAAINC PITL++ AA  +  AA     A+ECCICLGVFE
Sbjct: 107 FSTAVPGVRSSRSPPQQGLDQAAINCQPITLYKEAAAVEEAAATPAATAAECCICLGVFE 166

Query: 121 DGEKVKILPECRHCYHSDCVDLWLRSQPSCPLCRVSLH-VNTSNNLQML 164
           DGEKVKIL  C HC+HS+CVD WLR Q SCPLCR+SL   + SNNLQM+
Sbjct: 167 DGEKVKILALCHHCFHSECVDQWLRLQSSCPLCRISLRAADNSNNLQMV 215

[Close]

BLAST of Sed0024787 vs. ExPASy TrEMBL
Match: A0A5A7T2R0 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00210 PE=3 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 3.2e-60
Identity = 125/168 (74.40%), Postives = 137/168 (81.55%), Query Frame = 0


Query: 1   MATTQFSPSDHWHFTELDDRIFQIRGRTFFFIAVLFAVILLVTFIFLYARWVCRFHSLTA 60
           MAT+Q  PS  WHFTELDDR+FQIRGRTFFF+AVLFAVILLVTFIFLYARWVCRFH LT 
Sbjct: 1   MATSQVPPSVPWHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTT 60

Query: 61  ISAAVPGGRATR-PPPQQGLDQAAINCLPITLHRA-AAEGDGGAAAS---ECCICLGVFE 120
            SA++P  R  R PP QQGL   AIN LPITL++A AAE D  AAAS   EC ICLGVFE
Sbjct: 61  FSASLPVRRQPRSPPQQQGLGATAINSLPITLYKAPAAEEDPPAAASDAGECSICLGVFE 120

Query: 121 DGEKVKILPECRHCYHSDCVDLWLRSQPSCPLCRVSLHVNTSNNLQML 164
           DGEKVKILP CRHCYHS+CVD WLRS  SCPLCRVSL ++ SNNL+M+
Sbjct: 121 DGEKVKILPPCRHCYHSECVDRWLRSHSSCPLCRVSLCIDPSNNLEMV 168

[Close]

BLAST of Sed0024787 vs. ExPASy TrEMBL
Match: A0A1S4E052 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103495122 PE=3 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 3.2e-60
Identity = 125/168 (74.40%), Postives = 137/168 (81.55%), Query Frame = 0


Query: 1   MATTQFSPSDHWHFTELDDRIFQIRGRTFFFIAVLFAVILLVTFIFLYARWVCRFHSLTA 60
           MAT+Q  PS  WHFTELDDR+FQIRGRTFFF+AVLFAVILLVTFIFLYARWVCRFH LT 
Sbjct: 1   MATSQVPPSVPWHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTT 60

Query: 61  ISAAVPGGRATR-PPPQQGLDQAAINCLPITLHRA-AAEGDGGAAAS---ECCICLGVFE 120
            SA++P  R  R PP QQGL   AIN LPITL++A AAE D  AAAS   EC ICLGVFE
Sbjct: 61  FSASLPVRRQPRSPPQQQGLGATAINSLPITLYKAPAAEEDPPAAASDAGECSICLGVFE 120

Query: 121 DGEKVKILPECRHCYHSDCVDLWLRSQPSCPLCRVSLHVNTSNNLQML 164
           DGEKVKILP CRHCYHS+CVD WLRS  SCPLCRVSL ++ SNNL+M+
Sbjct: 121 DGEKVKILPPCRHCYHSECVDRWLRSHSSCPLCRVSLCIDPSNNLEMV 168

[Close]

BLAST of Sed0024787 vs. ExPASy TrEMBL
Match: A0A0A0KLZ2 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_5G210015 PE=3 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 3.0e-58
Identity = 120/168 (71.43%), Postives = 132/168 (78.57%), Query Frame = 0


Query: 1   MATTQFSPSDHWHFTELDDRIFQIRGRTFFFIAVLFAVILLVTFIFLYARWVCRFHSLTA 60
           MAT+Q  PS  WHFTELDDR+FQIRGRTFFF+AVLFAVILLVTFIFLYARWVCRFH LT 
Sbjct: 1   MATSQVPPSVPWHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTT 60

Query: 61  ISAAVPGGRATRPPPQQGLDQAAINCLPITLHR--AAAEGDGGAAAS---ECCICLGVFE 120
            SA +P  R    PPQQGL    I  LPITL++  AA E   GAAA+   EC ICLGVFE
Sbjct: 61  FSAPLPVHRLPSSPPQQGLGATTIISLPITLYKPPAAKEDAPGAAANDAGECSICLGVFE 120

Query: 121 DGEKVKILPECRHCYHSDCVDLWLRSQPSCPLCRVSLHVNTSNNLQML 164
           DGEKVKILP CRHCYHS+CVD WLRS  SCPLCRVSL ++ SNNL+M+
Sbjct: 121 DGEKVKILPPCRHCYHSECVDRWLRSHSSCPLCRVSLCIDPSNNLEMV 168

[Close]

BLAST of Sed0024787 vs. TAIR 10
Match: AT3G11110.1 (RING/U-box superfamily protein )

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-30
Identity = 71/149 (47.65%), Postives = 91/149 (61.07%), Query Frame = 0


Query: 11  HWHFTELDDRIFQIRGRTFFFIAVLFAVILLVTFIFLYARWVCRFHSLTAISAAVPGGRA 70
           +WH  + DDR FQI GRT FF   LF+V+L    + LY    C       + A+ P  R 
Sbjct: 15  YWHENQYDDRNFQIHGRTLFFALALFSVVLFFALLTLYIHRNCLPRDSINLHASSP-DRL 74

Query: 71  TRPPPQQGLDQAAINCLPITL-HRAAAEGDGGAAASECCICLGVFEDGEKVKILPECRHC 130
           TR     GLD A I  LP+ L  R  AE +      ECCICLG FE+GEK+K+LP C HC
Sbjct: 75  TR-CRSGGLDPAEIRSLPVVLCRRERAEEE---EEKECCICLGGFEEGEKMKVLPPCSHC 134

Query: 131 YHSDCVDLWLRSQPSCPLCRVSLHVNTSN 159
           YH +CVD WL+++ SCPLCRVS+ V++S+
Sbjct: 135 YHCECVDRWLKTESSCPLCRVSIRVDSSS 158

[Close]

BLAST of Sed0024787 vs. TAIR 10
Match: AT1G04360.1 (RING/U-box superfamily protein )

HSP 1 Score: 83.6 bits (205), Expect = 1.7e-16
Identity = 34/91 (37.36%), Postives = 55/91 (60.44%), Query Frame = 0


Query: 77  QGLDQAAINCLPITLHR----AAAEGDGGAAASECCICLGVFEDGEKVKILPECRHCYHS 136
           +GLD++AI  +P+   +     A E D    + EC +CL  F++ EK++I+P C H +H 
Sbjct: 100 RGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHI 159

Query: 137 DCVDLWLRSQPSCPLCRVSLHVNTSNNLQML 164
           DC+D+WL+   +CPLCR S+    S  L ++
Sbjct: 160 DCIDIWLQGNANCPLCRTSVSCEASFTLDLI 190

[Close]

BLAST of Sed0024787 vs. TAIR 10
Match: AT3G16720.1 (TOXICOS EN LEVADURA 2 )

HSP 1 Score: 82.8 bits (203), Expect = 2.8e-16
Identity = 46/131 (35.11%), Postives = 63/131 (48.09%), Query Frame = 0


Query: 32  IAVLFAVILLVTFIFLYARWVC----RFH---------SLTAISAAVPGGRATRPPPQQG 91
           I +LF V++L+ F+ LYARW      R H         +      A P   AT     +G
Sbjct: 35  IVILFFVVILMVFLHLYARWYLLRARRRHLRRRSRNRRATMVFFTADPSTAATSVVASRG 94

Query: 92  LDQAAINCLPITLHRAAAEGDGGAAASECCICLGVFEDGEKVKILPECRHCYHSDCVDLW 150
           LD   I  LP+         D      EC +CL  FE+ E  ++LP C+H +H DC+D+W
Sbjct: 95  LDPNVIKSLPVFTFSDETHKD----PIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMW 154

[Close]

BLAST of Sed0024787 vs. TAIR 10
Match: AT2G34990.1 (RING/U-box superfamily protein )

HSP 1 Score: 81.3 bits (199), Expect = 8.2e-16
Identity = 45/128 (35.16%), Postives = 66/128 (51.56%), Query Frame = 0


Query: 28  TFFFIAVLFAVILLVTFIFLYARWVCR-FHSLTAISAAVPGGRATRP--PPQQGLDQAAI 87
           T   I ++   I +V    +  RW  R F+S  +I+        +R      +GLD+A I
Sbjct: 14  TLLVITIILFAIFIVGLASVCFRWTSRQFYSQESINPFTDSDVESRTSITAVRGLDEAII 73

Query: 88  NCLPITLHRAAAEGDGGAAASECCICLGVFEDGEKVKILPECRHCYHSDCVDLWLRSQPS 147
           N  P  L+    E   G    EC +C+  FED E ++++PEC H +H+DCV +WL    +
Sbjct: 74  NSFPTFLYSEVKERRIGIGGVECAVCICEFEDHETLRLMPECCHVFHADCVSVWLSDHST 133

Query: 148 CPLCRVSL 153
           CPLCRV L
Sbjct: 134 CPLCRVDL 141

[Close]

BLAST of Sed0024787 vs. TAIR 10
Match: AT1G22500.1 (RING/U-box superfamily protein )

HSP 1 Score: 80.1 bits (196), Expect = 1.8e-15
Identity = 50/138 (36.23%), Postives = 68/138 (49.28%), Query Frame = 0


Query: 22  FQIRGRTFFFIAVLFAVILLVTFIF------LYARWVCRFHSLTAISAAVPGG-RATRPP 81
           F   GRT F       +I+LV+  F      +Y R  C  H+L   S   PG     R  
Sbjct: 27  FDDEGRTSFSPTTAIIMIVLVSVFFALGCISVYMR-RCLQHALGMDSGGGPGNWLNVRQT 86

Query: 82  PQQGLDQAAINCLPITLHRAAAEGDGGAAASECCICLGVFEDGEKVKILPECRHCYHSDC 141
            + GLD + I   P   +        G  A EC +CL  FED E ++++P+C H +H  C
Sbjct: 87  TEPGLDASVIETFPTFPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGC 146

Query: 142 VDLWLRSQPSCPLCRVSL 153
           +D WLRSQ +CPLCR +L
Sbjct: 147 IDAWLRSQTTCPLCRANL 163

The following BLAST results are available for this feature:

BLAST of Sed0024787 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023511628.1	4.0e-65	76.83	RING-H2 finger protein ATL66-like [Cucurbita pepo subsp. pepo] >XP_023511760.1 R...	[more]
KAG6599982.1	1.5e-64	76.22	RING-H2 finger protein ATL66, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_038892868.1	1.5e-64	76.65	RING-H2 finger protein ATL66-like [Benincasa hispida]	[more]
XP_022942690.1	1.5e-64	76.22	RING-H2 finger protein ATL66 [Cucurbita moschata]	[more]
XP_022996486.1	3.2e-62	73.96	RING-H2 finger protein ATL66 [Cucurbita maxima]	[more]

BLAST of Sed0024787 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRM0	1.7e-29	47.65	RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1	[more]
Q7XLY8	3.6e-16	42.31	E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=3994...	[more]
P93823	2.3e-15	37.36	RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1	[more]
Q8L9T5	4.0e-15	35.11	RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2	[more]
O64762	1.2e-14	35.16	RING-H2 finger protein ATL38 OS=Arabidopsis thaliana OX=3702 GN=ATL38 PE=2 SV=1	[more]

BLAST of Sed0024787 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FWS0	7.4e-65	76.22	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111447649...	[more]
A0A6J1K4V5	1.6e-62	73.96	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111491716 P...	[more]
A0A5A7T2R0	3.2e-60	74.40	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]
A0A1S4E052	3.2e-60	74.40	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103495122 PE=3 ...	[more]
A0A0A0KLZ2	3.0e-58	71.43	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_5G210015 PE...	[more]

BLAST of Sed0024787 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G11110.1	1.2e-30	47.65	RING/U-box superfamily protein	[more]
AT1G04360.1	1.7e-16	37.36	RING/U-box superfamily protein	[more]
AT3G16720.1	2.8e-16	35.11	TOXICOS EN LEVADURA 2	[more]
AT2G34990.1	8.2e-16	35.16	RING/U-box superfamily protein	[more]
AT1G22500.1	1.8e-15	36.23	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 107..148 e-value: 9.8E-5 score: 31.7
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 106..149 e-value: 4.1E-12 score: 46.3
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 107..149 score: 11.589345
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 69..155 e-value: 5.6E-19 score: 69.6
None	No IPR available	PANTHER	PTHR45676:SF41	RING-H2 FINGER PROTEIN ATL66	coord: 4..158
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 106..156
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 4..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0024787.1	Sed0024787.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome