Sed0024739 (gene) Chayote v1

Overview


Name	Sed0024739
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Cyclin-dependent kinases regulatory subunit
Location	LG03: 12422540 .. 12424127 (-)
RNA-Seq Expression	Sed0024739
Synteny	Sed0024739

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAAATTTTCATTTTTGTCCCCTCAACTTTCCATATTTGCTTCATTTGCCAAATTTAAAACAATATTTCCACTTCTTTTCTCATTCGTTCTTTTCATCTACTTCTTCATCGCTCTTCAGGTTTGCGATTTTTCTCCCAAATTTCTCTTTCTCTTAAGATTCTGCTTCCATTTCTGATCCTATTTCTCTGATTTTGCTTCTTTTTATTCAATTTTCGAAGATTCATCAAGCCCTAGTGGATTTGCAGTCAGAAATTCGGTGCGATGGGACAGATCCAGTACTCGGAGAAGTATTTCGATGATATCTATGAGTATAGGTCAGTGATTTCTCGTCATTGTCTATTTTACGATTCAGGATTTTTGTTTCGAATGGAGATCCATCGTTATTGTTCGATTTTCATGGTTCTTGTTGATTTCTCTTGTAGGCATGTGGTTCTTACTCCTGAAGTGGCGAAACTTCTCCCTAAGAATCGCCTTCTTTCTGAAGTAAGTAGTAGTTCTTGATCATTCTCTATCATATAATTTCGTATCGATTTGATCCTGTGATTATTTTACTGTATCGAAATTTCTGTTGTGAAATCATGTTACAGTGAATAGAAGTGAAATACAAACAGATATATCATCGGCTGAATTCATTGAAATTCTGAATCTCGAACCATTGATTGTGTGGTGCATAATCATCGGCTGCTTTTTAATCTAAATGCTATAAAAAAAAAATCGTATCGATTTGATCCTATGATCATATCCTGTATCAGAAATTCTTGTGTGAAATCGTGTTACATTGAATGAAAGTGAAATGGAAACTGAAATCTCTGGCATATTAAGACCTAGCAGTTTTTCGATTCAGTGAAACTCCGGAACTCGAATCATTGATTGTTGTTGTTTTTTTTTTCTCTGATTGATGATTGTGATATAATCTGAATGCTATAAGAAAAAAAAACGTATCAATTTGATCCTATGATTATATCATGTATCAGAAATTCTTGTGTGAAATCGTGTTACATTGAATGTAAGTGAAATGGAAACTGAAATCTCTGGCATATTAAGACCTAGCCGTTTTTCAATTCAGTGAAACTTCGAAACTTGAATCCTTGATTGTTGTTTTTATTTTCTGTGATTGATGATTGTGATATAATCTGAATGCTGTAAAACGTTTGTAATTTGATTGAGTGATGAATGGCAGAATGAATGGAGAGCGATCGGGGTTCAGCAGAGCCGTGGATGGGTTCATTATGCGATTCATCGCCCAGAGCCGCACATAATGCTGTTCAGGAGACCACTCAACTATCAGCAGCAGCAAGAGAATCAAGCTCAGCAGATTCTGGCCAAGTGATGATAGGTTTGATGCACTTTATCTTGCCTAGATCACTGTTCAAATATCTCCATATAAAACAAGAAAATGAATCATGTGTTTGTGTTTGTGTTTGTGTTTGCTGTGTAGTTTAGTGTAGTTTCTTCTCCAATTTGGAGAAGTTCTATGGCCCAGTTTATATCTGTCATAGTCATAAGCAGCACCCCCCCCATGGTTGATAAATTTGTGGTTTTAAATTGCTTTGATATAAATATGGTTTGTCTTCTTTTTTCTTGGCA

mRNA sequence

TAAAATTTTCATTTTTGTCCCCTCAACTTTCCATATTTGCTTCATTTGCCAAATTTAAAACAATATTTCCACTTCTTTTCTCATTCGTTCTTTTCATCTACTTCTTCATCGCTCTTCAGATTCATCAAGCCCTAGTGGATTTGCAGTCAGAAATTCGGTGCGATGGGACAGATCCAGTACTCGGAGAAGTATTTCGATGATATCTATGAGTATAGGCATGTGGTTCTTACTCCTGAAGTGGCGAAACTTCTCCCTAAGAATCGCCTTCTTTCTGAAAATGAATGGAGAGCGATCGGGGTTCAGCAGAGCCGTGGATGGGTTCATTATGCGATTCATCGCCCAGAGCCGCACATAATGCTGTTCAGGAGACCACTCAACTATCAGCAGCAGCAAGAGAATCAAGCTCAGCAGATTCTGGCCAAGTGATGATAGGTTTGATGCACTTTATCTTGCCTAGATCACTGTTCAAATATCTCCATATAAAACAAGAAAATGAATCATGTGTTTGTGTTTGTGTTTGTGTTTGCTGTGTAGTTTAGTGTAGTTTCTTCTCCAATTTGGAGAAGTTCTATGGCCCAGTTTATATCTGTCATAGTCATAAGCAGCACCCCCCCCATGGTTGATAAATTTGTGGTTTTAAATTGCTTTGATATAAATATGGTTTGTCTTCTTTTTTCTTGGCA

Coding sequence (CDS)

ATGGGACAGATCCAGTACTCGGAGAAGTATTTCGATGATATCTATGAGTATAGGCATGTGGTTCTTACTCCTGAAGTGGCGAAACTTCTCCCTAAGAATCGCCTTCTTTCTGAAAATGAATGGAGAGCGATCGGGGTTCAGCAGAGCCGTGGATGGGTTCATTATGCGATTCATCGCCCAGAGCCGCACATAATGCTGTTCAGGAGACCACTCAACTATCAGCAGCAGCAAGAGAATCAAGCTCAGCAGATTCTGGCCAAGTGA

Protein sequence

MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQILAK

Homology

[Close]

BLAST of Sed0024739 vs. NCBI nr
Match: PIA54927.1 (hypothetical protein AQUCO_00901082v1 [Aquilegia coerulea])

HSP 1 Score: 177.6 bits (449), Expect = 4.8e-41
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHV+L PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVILPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQILAK 88
          EPHIMLFRRPLNYQQQQENQAQQILAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQILAK 87

[Close]

BLAST of Sed0024739 vs. NCBI nr
Match: XP_011654109.1 (cyclin-dependent kinases regulatory subunit 1 [Cucumis sativus] >XP_016903015.1 PREDICTED: cyclin-dependent kinases regulatory subunit 1 isoform X2 [Cucumis melo] >KGN64861.1 hypothetical protein Csa_022815 [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 4.8e-41
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQA-QQILAK 88
          EPHIMLFRRPLNYQQQQENQA QQILAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 88

[Close]

BLAST of Sed0024739 vs. NCBI nr
Match: XP_022152941.1 (cyclin-dependent kinases regulatory subunit 1 [Momordica charantia])

HSP 1 Score: 177.2 bits (448), Expect = 6.2e-41
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQILAK 88
          EPHIMLFRRPLNYQQQQENQAQQI+AK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQIMAK 87

[Close]

BLAST of Sed0024739 vs. NCBI nr
Match: XP_007207527.1 (cyclin-dependent kinases regulatory subunit 1 [Prunus persica] >XP_008226728.1 PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Prunus mume] >XP_020422285.1 cyclin-dependent kinases regulatory subunit 1 [Prunus persica] >XP_021812204.1 cyclin-dependent kinases regulatory subunit 1 [Prunus avium] >XP_021812205.1 cyclin-dependent kinases regulatory subunit 1 [Prunus avium] >XP_034222696.1 cyclin-dependent kinases regulatory subunit 1 [Prunus dulcis] >CAB4282649.1 unnamed protein product [Prunus armeniaca] >ONI00958.1 hypothetical protein PRUPE_6G113800 [Prunus persica] >ONI00959.1 hypothetical protein PRUPE_6G113800 [Prunus persica] >CAB4313289.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 176.4 bits (446), Expect = 1.1e-40
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVL  EVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLPQEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQILAK 88
          EPHIMLFRRPLNYQQQQENQAQQ+LAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQVLAK 87

[Close]

BLAST of Sed0024739 vs. NCBI nr
Match: KAF5186146.1 (Cyclin-dependent kinases regulatory subunit [Thalictrum thalictroides])

HSP 1 Score: 176.4 bits (446), Expect = 1.1e-40
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD +EYRHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTFEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQILAK 88
          EPHIMLFRRPLNYQQQQENQAQQILAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQILAK 87

[Close]

BLAST of Sed0024739 vs. ExPASy Swiss-Prot
Match: O23249 (Cyclin-dependent kinases regulatory subunit 1 OS=Arabidopsis thaliana OX=3702 GN=CKS1 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.5e-42
Identity = 80/87 (91.95%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD +EYRHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYA+HRP
Sbjct: 1  MGQIQYSEKYFDDTFEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAVHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQILAK 88
          EPHIMLFRRPLNYQQQQENQAQ +L K
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQNMLVK 87

[Close]

BLAST of Sed0024739 vs. ExPASy Swiss-Prot
Match: A2XCH8 (Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. indica OX=39946 GN=CKS1 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 4.6e-39
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQA 82
          EPHIMLFRRPLN+QQQQE  A
Sbjct: 61 EPHIMLFRRPLNFQQQQEAAA 81

[Close]

BLAST of Sed0024739 vs. ExPASy Swiss-Prot
Match: Q6PS57 (Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CKS1 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 4.6e-39
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQA 82
          EPHIMLFRRPLN+QQQQE  A
Sbjct: 61 EPHIMLFRRPLNFQQQQEAAA 81

[Close]

BLAST of Sed0024739 vs. ExPASy Swiss-Prot
Match: Q9SJJ5 (Cyclin-dependent kinases regulatory subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CKS2 PE=1 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 7.4e-37
Identity = 70/80 (87.50%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYS+KYFDD +EYRHVVL PEVAKLLPKNR+LSE+EWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSDKYFDDTFEYRHVVLPPEVAKLLPKNRILSESEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQ 81
          EPHIMLFRRPLNYQQ+ + Q
Sbjct: 61 EPHIMLFRRPLNYQQEHQAQ 80

[Close]

BLAST of Sed0024739 vs. ExPASy Swiss-Prot
Match: P55933 (Probable cyclin-dependent kinases regulatory subunit OS=Physarum polycephalum OX=5791 PE=1 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 3.1e-27
Identity = 52/66 (78.79%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 4  IQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPH 63
          IQYSEKY+DD +EYRHV+L P+VAK +PKNRLLSE EWR +GVQQS+GWVHYA+HRPEPH
Sbjct: 6  IQYSEKYYDDKFEYRHVILPPDVAKEIPKNRLLSEGEWRGLGVQQSQGWVHYALHRPEPH 65

Query: 64 IMLFRR 70
          I+LFRR
Sbjct: 66 ILLFRR 71

[Close]

BLAST of Sed0024739 vs. ExPASy TrEMBL
Match: A0A2G5EH85 (Cyclin-dependent kinases regulatory subunit OS=Aquilegia coerulea OX=218851 GN=AQUCO_00901082v1 PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.3e-41
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHV+L PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVILPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQILAK 88
          EPHIMLFRRPLNYQQQQENQAQQILAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQILAK 87

[Close]

BLAST of Sed0024739 vs. ExPASy TrEMBL
Match: A0A0A0LY04 (Cyclin-dependent kinases regulatory subunit OS=Cucumis sativus OX=3659 GN=Csa_1G132710 PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.3e-41
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQA-QQILAK 88
          EPHIMLFRRPLNYQQQQENQA QQILAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 88

[Close]

BLAST of Sed0024739 vs. ExPASy TrEMBL
Match: A0A1S4E4W6 (Cyclin-dependent kinases regulatory subunit OS=Cucumis melo OX=3656 GN=LOC103500769 PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.3e-41
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQA-QQILAK 88
          EPHIMLFRRPLNYQQQQENQA QQILAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 88

[Close]

BLAST of Sed0024739 vs. ExPASy TrEMBL
Match: A0A6J1DJ87 (Cyclin-dependent kinases regulatory subunit OS=Momordica charantia OX=3673 GN=LOC111020553 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.0e-41
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQILAK 88
          EPHIMLFRRPLNYQQQQENQAQQI+AK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQIMAK 87

[Close]

BLAST of Sed0024739 vs. ExPASy TrEMBL
Match: A0A6J1I3M7 (Cyclin-dependent kinases regulatory subunit OS=Cucurbita maxima OX=3661 GN=LOC111469347 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 5.2e-41
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVLTP+VAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQA-QQILAK 88
          EPHIMLFRRPLNYQQQQENQA QQILAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 88

[Close]

BLAST of Sed0024739 vs. TAIR 10
Match: AT2G27960.1 (cyclin-dependent kinase-subunit 1 )

HSP 1 Score: 171.4 bits (433), Expect = 3.2e-43
Identity = 80/87 (91.95%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD +EYRHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYA+HRP
Sbjct: 1  MGQIQYSEKYFDDTFEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAVHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQILAK 88
          EPHIMLFRRPLNYQQQQENQAQ +L K
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQNMLVK 87

[Close]

BLAST of Sed0024739 vs. TAIR 10
Match: AT2G27970.1 (CDK-subunit 2 )

HSP 1 Score: 154.1 bits (388), Expect = 5.3e-38
Identity = 70/80 (87.50%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYS+KYFDD +EYRHVVL PEVAKLLPKNR+LSE+EWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSDKYFDDTFEYRHVVLPPEVAKLLPKNRILSESEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQ 81
          EPHIMLFRRPLNYQQ+ + Q
Sbjct: 61 EPHIMLFRRPLNYQQEHQAQ 80

The following BLAST results are available for this feature:

BLAST of Sed0024739 vs. NCBI nr


Match Name	E-value	Identity	Description
PIA54927.1	4.8e-41	96.55	hypothetical protein AQUCO_00901082v1 [Aquilegia coerulea]	[more]
XP_011654109.1	4.8e-41	98.86	cyclin-dependent kinases regulatory subunit 1 [Cucumis sativus] >XP_016903015.1 ...	[more]
XP_022152941.1	6.2e-41	96.55	cyclin-dependent kinases regulatory subunit 1 [Momordica charantia]	[more]
XP_007207527.1	1.1e-40	96.55	cyclin-dependent kinases regulatory subunit 1 [Prunus persica] >XP_008226728.1 P...	[more]
KAF5186146.1	1.1e-40	96.55	Cyclin-dependent kinases regulatory subunit [Thalictrum thalictroides]	[more]

BLAST of Sed0024739 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23249	4.5e-42	91.95	Cyclin-dependent kinases regulatory subunit 1 OS=Arabidopsis thaliana OX=3702 GN...	[more]
A2XCH8	4.6e-39	93.83	Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. indica OX=3...	[more]
Q6PS57	4.6e-39	93.83	Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. japonica OX...	[more]
Q9SJJ5	7.4e-37	87.50	Cyclin-dependent kinases regulatory subunit 2 OS=Arabidopsis thaliana OX=3702 GN...	[more]
P55933	3.1e-27	78.79	Probable cyclin-dependent kinases regulatory subunit OS=Physarum polycephalum OX...	[more]

BLAST of Sed0024739 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2G5EH85	2.3e-41	96.55	Cyclin-dependent kinases regulatory subunit OS=Aquilegia coerulea OX=218851 GN=A...	[more]
A0A0A0LY04	2.3e-41	98.86	Cyclin-dependent kinases regulatory subunit OS=Cucumis sativus OX=3659 GN=Csa_1G...	[more]
A0A1S4E4W6	2.3e-41	98.86	Cyclin-dependent kinases regulatory subunit OS=Cucumis melo OX=3656 GN=LOC103500...	[more]
A0A6J1DJ87	3.0e-41	96.55	Cyclin-dependent kinases regulatory subunit OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1I3M7	5.2e-41	97.73	Cyclin-dependent kinases regulatory subunit OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

BLAST of Sed0024739 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27960.1	3.2e-43	91.95	cyclin-dependent kinase-subunit 1	[more]
AT2G27970.1	5.3e-38	87.50	CDK-subunit 2	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000789	Cyclin-dependent kinase, regulatory subunit	PRINTS	PR00296	CYCLINKINASE	coord: 40..54 score: 75.9 coord: 3..17 score: 64.1 coord: 55..69 score: 76.41 coord: 18..32 score: 56.41
IPR000789	Cyclin-dependent kinase, regulatory subunit	SMART	SM01084	CKS_2	coord: 3..72 e-value: 1.4E-45 score: 167.4
IPR000789	Cyclin-dependent kinase, regulatory subunit	PFAM	PF01111	CKS	coord: 4..70 e-value: 6.6E-35 score: 119.2
IPR000789	Cyclin-dependent kinase, regulatory subunit	PROSITE	PS00944	CKS_1	coord: 6..24
IPR036858	Cyclin-dependent kinase, regulatory subunit superfamily	GENE3D	3.30.170.10		coord: 1..84 e-value: 2.5E-39 score: 135.5
IPR036858	Cyclin-dependent kinase, regulatory subunit superfamily	SUPERFAMILY	55637	Cell cycle regulatory proteins	coord: 1..81
None	No IPR available	PANTHER	PTHR23415:SF29	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT	coord: 1..84
None	No IPR available	PANTHER	PTHR23415	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7	coord: 1..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0024739.1	Sed0024739.1	mRNA
Sed0024739.2	Sed0024739.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division
biological_process	GO:0045737	positive regulation of cyclin-dependent protein serine/threonine kinase activity
biological_process	GO:0007346	regulation of mitotic cell cycle
cellular_component	GO:0000307	cyclin-dependent protein kinase holoenzyme complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0061575	cyclin-dependent protein serine/threonine kinase activator activity
molecular_function	GO:0042393	histone binding
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0019901	protein kinase binding
molecular_function	GO:0043130	ubiquitin binding
molecular_function	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity