Sed0024469 (gene) Chayote v1

Overview


Name	Sed0024469
Type	gene
Organism	Sechium edule (Chayote v1)
Description	PI-PLC Y-box domain-containing protein
Location	LG04: 45735137 .. 45735508 (+)
RNA-Seq Expression	Sed0024469
Synteny	Sed0024469

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAGCGAAAACTGTAATGCCAGAGGAACGAATTCCTCCATCGCCTTGCTGCAGGAGAGATTTAGACGATTGCAGAAAGCTAAGGAGTTGAGAGAGCAGAAAGAGTGTCGAAGGCTGTCGTCTGAGTCGATACAGGCCGCCAATACAGCTGCGTGCTCGGAGCAAACTGGCTTGTTTTTCCATTCTGAGCTAGTTCTTCCACCTAGGTCACCACTCCAAGGCTCTTCATACCATCAACAACCAAGCAGAAAATCTCATCTTCAAGTCACAGATAATCTTACTTTATCAGACATGGGGTCAAGAGAAACAGTCATGCACAGAACAAACTGTGTTGATGATTCAAATATTGACACCTCTCTTCATCTTTGA

mRNA sequence

ATGAGCAGCGAAAACTGTAATGCCAGAGGAACGAATTCCTCCATCGCCTTGCTGCAGGAGAGATTTAGACGATTGCAGAAAGCTAAGGAGTTGAGAGAGCAGAAAGAGTGTCGAAGGCTGTCGTCTGAGTCGATACAGGCCGCCAATACAGCTGCGTGCTCGGAGCAAACTGGCTTGTTTTTCCATTCTGAGCTAGTTCTTCCACCTAGGTCACCACTCCAAGGCTCTTCATACCATCAACAACCAAGCAGAAAATCTCATCTTCAAGTCACAGATAATCTTACTTTATCAGACATGGGGTCAAGAGAAACAGTCATGCACAGAACAAACTGTGTTGATGATTCAAATATTGACACCTCTCTTCATCTTTGA

Coding sequence (CDS)

ATGAGCAGCGAAAACTGTAATGCCAGAGGAACGAATTCCTCCATCGCCTTGCTGCAGGAGAGATTTAGACGATTGCAGAAAGCTAAGGAGTTGAGAGAGCAGAAAGAGTGTCGAAGGCTGTCGTCTGAGTCGATACAGGCCGCCAATACAGCTGCGTGCTCGGAGCAAACTGGCTTGTTTTTCCATTCTGAGCTAGTTCTTCCACCTAGGTCACCACTCCAAGGCTCTTCATACCATCAACAACCAAGCAGAAAATCTCATCTTCAAGTCACAGATAATCTTACTTTATCAGACATGGGGTCAAGAGAAACAGTCATGCACAGAACAAACTGTGTTGATGATTCAAATATTGACACCTCTCTTCATCTTTGA

Protein sequence

MSSENCNARGTNSSIALLQERFRRLQKAKELREQKECRRLSSESIQAANTAACSEQTGLFFHSELVLPPRSPLQGSSYHQQPSRKSHLQVTDNLTLSDMGSRETVMHRTNCVDDSNIDTSLHL

Homology

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BLAST of Sed0024469 vs. NCBI nr
Match: KAE8645981.1 (hypothetical protein Csa_015491 [Cucumis sativus])

HSP 1 Score: 200.7 bits (509), Expect = 7.5e-48
Identity = 110/125 (88.00%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 1   MSSENCNARGTNSSIALLQERFRRLQKAKELREQKECRRLSSESIQAANTAACSEQTGLF 60
           MSSENCNAR  NSSIALLQERFR+LQKAKELREQKE RR+SSESIQ ANTA CSEQTGL+
Sbjct: 1   MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRMSSESIQ-ANTAVCSEQTGLY 60

Query: 61  FHSELVLPPRSPLQGSSYHQQ--PSRKSHLQVTDNLTLSDMGSRETVMHRTNCVDDSNID 120
           FHSELVLPPRSPLQGSSY Q    SRKSHLQVTDNLTLSD+GSRE VMHRTNCVDDSNID
Sbjct: 61  FHSELVLPPRSPLQGSSYLQPVLESRKSHLQVTDNLTLSDVGSREKVMHRTNCVDDSNID 120

Query: 121 TSLHL 124
           TSLHL
Sbjct: 121 TSLHL 124

[Close]

BLAST of Sed0024469 vs. NCBI nr
Match: KAA0048723.1 (hypothetical protein E6C27_scaffold43G00160 [Cucumis melo var. makuwa] >TYK07906.1 hypothetical protein E5676_scaffold265G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 196.8 bits (499), Expect = 1.1e-46
Identity = 108/125 (86.40%), Postives = 111/125 (88.80%), Query Frame = 0


Query: 1   MSSENCNARGTNSSIALLQERFRRLQKAKELREQKECRRLSSESIQAANTAACSEQTGLF 60
           MS ENCNAR  NSSIALLQERFR+LQKAKELREQKE RR+SSESIQ  NTA CSEQTGL+
Sbjct: 1   MSRENCNARAMNSSIALLQERFRQLQKAKELREQKEIRRMSSESIQ-PNTAVCSEQTGLY 60

Query: 61  FHSELVLPPRSPLQGSSYHQQ--PSRKSHLQVTDNLTLSDMGSRETVMHRTNCVDDSNID 120
           FHSELVLPPRSPLQG SY Q    SRKSHLQVTDNLTLSDMGSRE VMHRTNCVDDSNID
Sbjct: 61  FHSELVLPPRSPLQGPSYLQPVLESRKSHLQVTDNLTLSDMGSREKVMHRTNCVDDSNID 120

Query: 121 TSLHL 124
           TSLHL
Sbjct: 121 TSLHL 124

[Close]

BLAST of Sed0024469 vs. NCBI nr
Match: KAG6607761.1 (hypothetical protein SDJN03_01103, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 167.2 bits (422), Expect = 9.1e-38
Identity = 93/114 (81.58%), Postives = 103/114 (90.35%), Query Frame = 0


Query: 12  NSSIALLQERFRRLQKAKELREQKECRRLSSESIQAANTAACSEQTGLFFHSELVLPPRS 71
           NSSIALLQERFR+LQKAKELRE+KE + LSSESI+ AN+AA SEQTGLFFHSELVLPP+S
Sbjct: 6   NSSIALLQERFRQLQKAKELRERKEVQNLSSESIR-ANSAAWSEQTGLFFHSELVLPPKS 65

Query: 72  PLQGSSYHQQ--PSRKSHLQVTDNLTLSDMGSRETVMHRTNCVDDSNIDTSLHL 124
           P QGSSY Q    SRKSHLQ+TD+L+LSDMGSRETVM+RTNCVDD NIDTSLHL
Sbjct: 66  PFQGSSYLQPSLESRKSHLQITDDLSLSDMGSRETVMNRTNCVDDLNIDTSLHL 118

[Close]

BLAST of Sed0024469 vs. NCBI nr
Match: KAF3950464.1 (hypothetical protein CMV_023789 [Castanea mollissima])

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-18
Identity = 64/125 (51.20%), Postives = 81/125 (64.80%), Query Frame = 0


Query: 1   MSSENCNARGTNSSIALLQERFRRLQKAKELREQKECRRLSSESIQAANTAACSEQTGLF 60
           M  ++C+A   +SSIALLQERFR+LQ+AKE+RE +E  RLSSE  +  N A   + T LF
Sbjct: 1   MGRQSCDATVIHSSIALLQERFRQLQRAKEMREARELLRLSSEP-ERVNPATLYDPTRLF 60

Query: 61  FHSELVLPPRSPLQGSSYHQQPSRKSH--LQVTDNLTLSDMGSRETVMHRTNCVDDSNID 120
           FHSEL+ PPR   QGS Y Q   +  H  +QV D      +GS +TV  R N  DDS++D
Sbjct: 61  FHSELIYPPRPLPQGSLYLQPNFQSKHTDIQVKDTPFFGSLGSIDTVTDRKNDFDDSDVD 120

Query: 121 TSLHL 124
           TSLHL
Sbjct: 121 TSLHL 124

[Close]

BLAST of Sed0024469 vs. NCBI nr
Match: KAF5728455.1 (hypothetical protein HS088_TW21G00602 [Tripterygium wilfordii])

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-18
Identity = 62/124 (50.00%), Postives = 79/124 (63.71%), Query Frame = 0


Query: 2   SSENCNARGTNSSIALLQERFRRLQKAKELREQKECRRLSSESIQAANTAACSEQTGLFF 61
           SS+ C++   +SSIALLQERFRRL+KAKE+R+ +E  RL SE  Q      C EQ   FF
Sbjct: 3   SSKGCDSTFVHSSIALLQERFRRLEKAKEMRQHRELLRLISEEEQINPITVC-EQPKRFF 62

Query: 62  HSELVLPPRSPLQGSSYHQQPSRKSHL--QVTDNLTLSDMGSRETVMHRTNCVDDSNIDT 121
           HSEL+LPPR PLQG    Q   +  H+  Q T+   L+D+     V H T+  DDS++DT
Sbjct: 63  HSELILPPRPPLQGHPDFQPERQNKHIDPQATETPNLTDLWHENKVAHGTHNFDDSDVDT 122

Query: 122 SLHL 124
           SLHL
Sbjct: 123 SLHL 125

[Close]

BLAST of Sed0024469 vs. ExPASy TrEMBL
Match: A0A0A0LBC7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G769680 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 3.6e-48
Identity = 110/125 (88.00%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 1   MSSENCNARGTNSSIALLQERFRRLQKAKELREQKECRRLSSESIQAANTAACSEQTGLF 60
           MSSENCNAR  NSSIALLQERFR+LQKAKELREQKE RR+SSESIQ ANTA CSEQTGL+
Sbjct: 1   MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRMSSESIQ-ANTAVCSEQTGLY 60

Query: 61  FHSELVLPPRSPLQGSSYHQQ--PSRKSHLQVTDNLTLSDMGSRETVMHRTNCVDDSNID 120
           FHSELVLPPRSPLQGSSY Q    SRKSHLQVTDNLTLSD+GSRE VMHRTNCVDDSNID
Sbjct: 61  FHSELVLPPRSPLQGSSYLQPVLESRKSHLQVTDNLTLSDVGSREKVMHRTNCVDDSNID 120

Query: 121 TSLHL 124
           TSLHL
Sbjct: 121 TSLHL 124

[Close]

BLAST of Sed0024469 vs. ExPASy TrEMBL
Match: A0A5D3CC18 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00160 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 5.2e-47
Identity = 108/125 (86.40%), Postives = 111/125 (88.80%), Query Frame = 0


Query: 1   MSSENCNARGTNSSIALLQERFRRLQKAKELREQKECRRLSSESIQAANTAACSEQTGLF 60
           MS ENCNAR  NSSIALLQERFR+LQKAKELREQKE RR+SSESIQ  NTA CSEQTGL+
Sbjct: 1   MSRENCNARAMNSSIALLQERFRQLQKAKELREQKEIRRMSSESIQ-PNTAVCSEQTGLY 60

Query: 61  FHSELVLPPRSPLQGSSYHQQ--PSRKSHLQVTDNLTLSDMGSRETVMHRTNCVDDSNID 120
           FHSELVLPPRSPLQG SY Q    SRKSHLQVTDNLTLSDMGSRE VMHRTNCVDDSNID
Sbjct: 61  FHSELVLPPRSPLQGPSYLQPVLESRKSHLQVTDNLTLSDMGSREKVMHRTNCVDDSNID 120

Query: 121 TSLHL 124
           TSLHL
Sbjct: 121 TSLHL 124

[Close]

BLAST of Sed0024469 vs. ExPASy TrEMBL
Match: A0A7J7C3F3 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW21G00602 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 6.0e-19
Identity = 62/124 (50.00%), Postives = 79/124 (63.71%), Query Frame = 0


Query: 2   SSENCNARGTNSSIALLQERFRRLQKAKELREQKECRRLSSESIQAANTAACSEQTGLFF 61
           SS+ C++   +SSIALLQERFRRL+KAKE+R+ +E  RL SE  Q      C EQ   FF
Sbjct: 3   SSKGCDSTFVHSSIALLQERFRRLEKAKEMRQHRELLRLISEEEQINPITVC-EQPKRFF 62

Query: 62  HSELVLPPRSPLQGSSYHQQPSRKSHL--QVTDNLTLSDMGSRETVMHRTNCVDDSNIDT 121
           HSEL+LPPR PLQG    Q   +  H+  Q T+   L+D+     V H T+  DDS++DT
Sbjct: 63  HSELILPPRPPLQGHPDFQPERQNKHIDPQATETPNLTDLWHENKVAHGTHNFDDSDVDT 122

Query: 122 SLHL 124
           SLHL
Sbjct: 123 SLHL 125

[Close]

BLAST of Sed0024469 vs. ExPASy TrEMBL
Match: B9T468 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0423940 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.7e-18
Identity = 63/125 (50.40%), Postives = 83/125 (66.40%), Query Frame = 0


Query: 1   MSSENCNARGTNSSIALLQERFRRLQKAKELREQKECRRLSSESIQAANTAACSEQTGLF 60
           M  +NC+    +SSIALLQERFR+L++AKE+R+Q+E  RL SE+ Q     A  EQ+  F
Sbjct: 1   MGRQNCDPTSIHSSIALLQERFRQLERAKEMRQQRELLRLFSEAEQVKPPKA-FEQSRPF 60

Query: 61  FHSELVLPPRSPLQGSSYHQ--QPSRKSHLQVTDNLTLSDMGSRETVMHRTNCVDDSNID 120
           FHSELVLP   PLQ S Y Q    +R + LQ+ +     D+ S+ TVMH TN  D+S++D
Sbjct: 61  FHSELVLPLGQPLQDSLYLQPNMQNRHAELQINETPNSVDLWSKNTVMHITNNFDESDVD 120

Query: 121 TSLHL 124
           TSLHL
Sbjct: 121 TSLHL 124

[Close]

BLAST of Sed0024469 vs. ExPASy TrEMBL
Match: A0A7J9FDZ1 (Uncharacterized protein OS=Gossypium trilobum OX=34281 GN=Gotri_001224 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.5e-17
Identity = 59/112 (52.68%), Postives = 82/112 (73.21%), Query Frame = 0


Query: 12  NSSIALLQERFRRLQKAKELREQKECRRLSSESIQAANTAACSEQTGLFFHSELVLPPRS 71
           +SSIALLQERFRRLQ+AKELR+++E  RL SE+ +  N    +E + LFFHSEL+L PR 
Sbjct: 10  HSSIALLQERFRRLQRAKELRQEREVLRLLSEA-ERINQGTTNEASQLFFHSELILQPRP 69

Query: 72  PLQGSSYHQQPSRKSHLQVTDNLTLSDMGSRETVMHRTNCVDDSNIDTSLHL 124
           PLQG S H++ S ++  QV +   LS++  R+ V+H T+  +DS++DTSLHL
Sbjct: 70  PLQG-SVHRESSMQNRRQVLETPILSNLQQRDMVLH-TSTFNDSDVDTSLHL 118

The following BLAST results are available for this feature:

BLAST of Sed0024469 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645981.1	7.5e-48	88.00	hypothetical protein Csa_015491 [Cucumis sativus]	[more]
KAA0048723.1	1.1e-46	86.40	hypothetical protein E6C27_scaffold43G00160 [Cucumis melo var. makuwa] >TYK07906...	[more]
KAG6607761.1	9.1e-38	81.58	hypothetical protein SDJN03_01103, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAF3950464.1	1.2e-18	51.20	hypothetical protein CMV_023789 [Castanea mollissima]	[more]
KAF5728455.1	1.2e-18	50.00	hypothetical protein HS088_TW21G00602 [Tripterygium wilfordii]	[more]

BLAST of Sed0024469 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0024469 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBC7	3.6e-48	88.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G769680 PE=4 SV=1	[more]
A0A5D3CC18	5.2e-47	86.40	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A7J7C3F3	6.0e-19	50.00	Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW21G00602 ...	[more]
B9T468	1.7e-18	50.40	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0423940 PE=4 SV=1	[more]
A0A7J9FDZ1	1.5e-17	52.68	Uncharacterized protein OS=Gossypium trilobum OX=34281 GN=Gotri_001224 PE=4 SV=1	[more]

BLAST of Sed0024469 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 15..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..90
None	No IPR available	PANTHER	PTHR34570	OS03G0593100 PROTEIN	coord: 1..123
None	No IPR available	PANTHER	PTHR34570:SF2	OS03G0593100 PROTEIN	coord: 1..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0024469.1	Sed0024469.1	mRNA