Sed0024289 (gene) Chayote v1

Overview
NameSed0024289
Typegene
OrganismSechium edule (Chayote v1)
Descriptioncell wall protein RBR3-like isoform X2
LocationLG03: 2123163 .. 2125983 (-)
RNA-Seq ExpressionSed0024289
SyntenySed0024289
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTACGGCCTTACAATTATCGCTCTCAAATCTTCCCCTCGAAGTTTCATCTTCAAAACCATTTTCCCGCCACCGCCACCGCCACCGCCACCGCCAAATTTCTCCGGTCACTTCTTCAGCGCATCTTCTTCAACATGAACATCAGGTAACACTTTCTTCTCTCTGTGAAACAGGAAGGGGATGGCAATGGAATCCAAGAAACGAAATCGAAAACCGCTCTCGGATTGTACCAATATCGTCCTCTCCTCGCAATCGCCGGCTTCAAATTTCTCCGCTGCAATCAAATCTCGCAAGCGTGTAATTAAATCCGTCGTTAAAGAAGTTGTCAACGACGAGAAGAAACGCGAATCGAGTTTTGCGTCTGCATCTACATCCGTTGATTTACAAGCGAACCCTAGTTTTGAGTTTCTTCCTGCAGAACCAAACCCTAGTTCTTGTAGTCTTCCTATAGAAGCATCCACTCCTTTGCGGCGTACTGATTTGCCGTCTTGTTCTGGTAATTGTACTTTCTCGTTGATTTGTTGAGATTTTGGTGTTTGGTTCTTGATTTTTGGGTAGGAATACTGTACTTGAAATACTAGGGAATTTAAGGAGTACAAGCTGTTTTGGGGATTTGTTGGTTTACTGTTAGGTTCTTGTGAGATTTCTGCCTGCGGGAGAGTATTATTCTATACACATGGTTATATGAACTAGGAACTAGGAACTTGAGATTTGAGATTCTTACTGTTCGATTTTTTTTCATGGTTTGAACTCTGTGTAATATGTTGCGTATTGATTTCAGGAACAGATCATGTTTCTGAGCCCAAGTCCTTCTACAGTCGAAGGAACCCGACGAATAAAAGGAAGAGCGTTGAGATAACAGATGCACCATTTGTCTTCTCTACCGCATCAAAAGTCGAAACTAGGTAAAGCTCTTTGTAGTTTTTCTGCCAATTCGAAACGGAGTCTCTTTTTACATTTGAGTCTCTGCTGCGTTTAATGGATTGATTTTCTTGAACCAGAGGAATTTAGTCGTGGGTTCGTAATGAAAAGTGTTACCGTTTTGTATATGTGGTTAATGTAATTCTATGGTTGCTAAGTTTCAAAGGAACAGTTTACCTGCTCCTTACAGTAATTATCAACCTGGTCTGCCCCTTCCCTGTCTTTCGGATAAATTAAGCAGTTATCTATGTTGGTTTATGCATTGCTTTGAATTTCTATGAAAAATCTGACAATTAAGGCCTCGTTTGATAACCATTTGGTTTTTTGTTTTTTGTTTATGAAATTTAGGCCTATTTCTACTCAAATTTCCTACTATGTGCTCCATCTTTCCTGCAATATATGCATCTCTCGTTAAGAAAGTAGCTGAATATTAACCAAATTTCAAAAACAAAAATAAGCTTTTATAAGCTACTTTTTTTTGTTTCTAAATTTTGGTTTTATTTATTAAAATATAGGTAAGATTGTAGATATCAAAATAAGAAAAAAGCTATGGTAAGGTAGTTGTTGTAGGCTTAAATTTCAAAAAAACAAAATTGGTTATCATATGGGGCCTAAAAGTTACCATTCTAGTTGATCAGGTGTCACTCTTGTATTTATCCAGATGAGGGAAAAATTGCACCAACTAAATCAGAATTTGTCAACACTTTTTTTGTTTTATTTTTTGTCGATAGGGTTGTTGAGTCTCAATTGTTTGACTGCTGTAGGATGAAAAGTTTCAGTCTGTTGACGCTTTCAATTTGTAATTGAATGCTTGTTTGGCTTCTCTAAAGATATGGATTAAGAGATATGAGAAATCTGTCTCCTAATCTTTCATTTTTTGTATATTACTCATTTAGTAGTTAATCATTCCCTTGCTTTTATGTAGGGTTGAGAAAAAAGATGGATACAGCAGCCCATCCAAAGCGAAGACTGTACCATATAGAAAGGTCCGTCTGAAAGTTATAGCGCTGTCATTTTTCTAAATCTGTCAATCTAAACTTGGGGCATGCTACTATCCTTGTTTTTTCTTCTTGCCTTTTCAGTTTTTAATTTGAAGCTTATGCTTTAAGTCAGAAAAATATGTGTTCTGATATTTCTCAAAAGAAATGTGATGCTAGCTGTGCTTATCCATACCACAATTGGTAGTTAAAAATCTTAAATCATAGTTCGACAAATTGTACTGATGAGTAGCTTTTACTTTTCTTTTCATTTGACAGAGGCAGCGCTCCTCAATATATGGGGACGATGAATGCGAGTTCGTTCTTCCACGGGAATTTGTTGAGCAGCAGAAAGCATATTTTTCAGAAGTTGATGCATTTGAACTGCCAATGGAGGAGGCTAAATCATCGGACTCGGAGTAGATGGTGCTGTATAGTTTTGTGAAGCATAGGCAATGGAGATTCAAGATAGTAGTGTGCATGGGGAAGCTGGAAAGTAGTTCATGTTCATAACTCATAGTTCCGGCTTGCTCACTTCTGTCGTTCGATGCAGGTGCTGTTCTTTCAACTCTTTCAAATATGTTAGCTTTTAGTGTCTTTAAGATCTCTCTCTCCCTCTTTTTAGTTCGACGTATGGGATGAGGAGATTTAAATCGCTATGTAGTTTAATCAATTGAGCTATGATGATGTTGGCTAATGAGAAAGTTGATCTTTTTTATTTGTTAGGCTGAGAATTTTTTTTTAATTTTTGCATTTGCAATATAATCTTCAAGTGTGGCTTTATAGACTAATACAGGTTTGGACTGGATAGGTAACTTGGCCACAGATCAAAGAGGGAAGTGTTTGGTCAATTAGGGTGTGTTTGGGCTCCCGTTTATTATAAACGGTGGTTATCTAAACCTGCGTGCCTGTTTATCTAAAAC

mRNA sequence

GTTTACGGCCTTACAATTATCGCTCTCAAATCTTCCCCTCGAAGTTTCATCTTCAAAACCATTTTCCCGCCACCGCCACCGCCACCGCCACCGCCAAATTTCTCCGGTCACTTCTTCAGCGCATCTTCTTCAACATGAACATCAGGTAACACTTTCTTCTCTCTGTGAAACAGGAAGGGGATGGCAATGGAATCCAAGAAACGAAATCGAAAACCGCTCTCGGATTGTACCAATATCGTCCTCTCCTCGCAATCGCCGGCTTCAAATTTCTCCGCTGCAATCAAATCTCGCAAGCGTGTAATTAAATCCGTCGTTAAAGAAGTTGTCAACGACGAGAAGAAACGCGAATCGAGTTTTGCGTCTGCATCTACATCCGTTGATTTACAAGCGAACCCTAGTTTTGAGTTTCTTCCTGCAGAACCAAACCCTAGTTCTTGTAGTCTTCCTATAGAAGCATCCACTCCTTTGCGGCGTACTGATTTGCCGTCTTGTTCTGGAACAGATCATGTTTCTGAGCCCAAGTCCTTCTACAGTCGAAGGAACCCGACGAATAAAAGGAAGAGCGTTGAGATAACAGATGCACCATTTGTCTTCTCTACCGCATCAAAAGTCGAAACTAGGGTTGAGAAAAAAGATGGATACAGCAGCCCATCCAAAGCGAAGACTGTACCATATAGAAAGAGGCAGCGCTCCTCAATATATGGGGACGATGAATGCGAGTTCGTTCTTCCACGGGAATTTGTTGAGCAGCAGAAAGCATATTTTTCAGAAGTTGATGCATTTGAACTGCCAATGGAGGAGGCTAAATCATCGGACTCGGAGTAGATGGTGCTGTATAGTTTTGTGAAGCATAGGCAATGGAGATTCAAGATAGTAGTGTGCATGGGGAAGCTGGAAAGTAGTTCATGTTCATAACTCATAGTTCCGGCTTGCTCACTTCTGTCGTTCGATGCAGGTGCTGTTCTTTCAACTCTTTCAAATATGTTAGCTTTTAGTGTCTTTAAGATCTCTCTCTCCCTCTTTTTAGTTCGACGTATGGGATGAGGAGATTTAAATCGCTATGTAGTTTAATCAATTGAGCTATGATGATGTTGGCTAATGAGAAAGTTGATCTTTTTTATTTGTTAGGCTGAGAATTTTTTTTTAATTTTTGCATTTGCAATATAATCTTCAAGTGTGGCTTTATAGACTAATACAGGTTTGGACTGGATAGGTAACTTGGCCACAGATCAAAGAGGGAAGTGTTTGGTCAATTAGGGTGTGTTTGGGCTCCCGTTTATTATAAACGGTGGTTATCTAAACCTGCGTGCCTGTTTATCTAAAAC

Coding sequence (CDS)

ATGGCAATGGAATCCAAGAAACGAAATCGAAAACCGCTCTCGGATTGTACCAATATCGTCCTCTCCTCGCAATCGCCGGCTTCAAATTTCTCCGCTGCAATCAAATCTCGCAAGCGTGTAATTAAATCCGTCGTTAAAGAAGTTGTCAACGACGAGAAGAAACGCGAATCGAGTTTTGCGTCTGCATCTACATCCGTTGATTTACAAGCGAACCCTAGTTTTGAGTTTCTTCCTGCAGAACCAAACCCTAGTTCTTGTAGTCTTCCTATAGAAGCATCCACTCCTTTGCGGCGTACTGATTTGCCGTCTTGTTCTGGAACAGATCATGTTTCTGAGCCCAAGTCCTTCTACAGTCGAAGGAACCCGACGAATAAAAGGAAGAGCGTTGAGATAACAGATGCACCATTTGTCTTCTCTACCGCATCAAAAGTCGAAACTAGGGTTGAGAAAAAAGATGGATACAGCAGCCCATCCAAAGCGAAGACTGTACCATATAGAAAGAGGCAGCGCTCCTCAATATATGGGGACGATGAATGCGAGTTCGTTCTTCCACGGGAATTTGTTGAGCAGCAGAAAGCATATTTTTCAGAAGTTGATGCATTTGAACTGCCAATGGAGGAGGCTAAATCATCGGACTCGGAGTAG

Protein sequence

MAMESKKRNRKPLSDCTNIVLSSQSPASNFSAAIKSRKRVIKSVVKEVVNDEKKRESSFASASTSVDLQANPSFEFLPAEPNPSSCSLPIEASTPLRRTDLPSCSGTDHVSEPKSFYSRRNPTNKRKSVEITDAPFVFSTASKVETRVEKKDGYSSPSKAKTVPYRKRQRSSIYGDDECEFVLPREFVEQQKAYFSEVDAFELPMEEAKSSDSE
Homology
BLAST of Sed0024289 vs. NCBI nr
Match: XP_038884349.1 (uncharacterized protein LOC120075210 isoform X3 [Benincasa hispida])

HSP 1 Score: 269.2 bits (687), Expect = 3.0e-68
Identity = 156/234 (66.67%), Postives = 177/234 (75.64%), Query Frame = 0

Query: 3   MESKK---RNRKPLSDCTNIVLSSQSPASNFSAAIKSRKRVIKSVVKEVVNDEKKRESSF 62
           MES+K   R RKPL+DCTN +LSSQS ASNFSA+IK RKRVIKS VK+VVN+EKK +   
Sbjct: 1   MESQKRILRARKPLADCTNTILSSQSSASNFSASIKPRKRVIKSAVKDVVNNEKKSQPVL 60

Query: 63  ASASTSVDLQA-NPSFEFLPAEP------------------NPSSCSLPIEASTPLRRTD 122
           AS STSV+L+A NPS +FLP EP                   PSS  LP E STP RR D
Sbjct: 61  ASESTSVNLRASNPSSDFLPTEPASDFSPVEPNPSADSLPSEPSSSRLPTEVSTPPRRAD 120

Query: 123 LPSCSGTDHVSEPKSFYSRRNPTNKRKSVEITDAPFVFSTASKVETRVEKKDGYSSPSKA 182
           LPS SGTD VSEP+SFYSRR PTNKRKSVEI  APF+FST+SK+ TR  K++GY SPSKA
Sbjct: 121 LPSSSGTDRVSEPQSFYSRRQPTNKRKSVEIAVAPFIFSTSSKILTRGRKREGYDSPSKA 180

Query: 183 KTVPYRKRQRSSIYGDDECEFVLPREFVEQQKAYFSEVDAFELPMEEAKSSDSE 215
           KTVP +KRQR+++Y  DE    LPREFVEQQKAYFSEVDAFELP+EEAKSSDSE
Sbjct: 181 KTVPCKKRQRATMYEQDESNIELPREFVEQQKAYFSEVDAFELPVEEAKSSDSE 234

BLAST of Sed0024289 vs. NCBI nr
Match: XP_023515045.1 (uncharacterized protein LOC111779162 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 266.5 bits (680), Expect = 1.9e-67
Identity = 155/234 (66.24%), Postives = 179/234 (76.50%), Query Frame = 0

Query: 3   MESKKRN---RKPLSDCTNIVLSSQSPASNFSAAIKSRKRVIKSVVKEVVNDEKKRESSF 62
           MES+KRN   RKPL+DCTN VLSSQS ASN SAAIK RKRV+KS VK+V+N+EK+  SSF
Sbjct: 1   MESQKRNLRVRKPLADCTNTVLSSQSSASNLSAAIKPRKRVVKSAVKDVLNNEKEGVSSF 60

Query: 63  ASASTSVDLQA-NPSFEFLPAEPN------------------PSSCSLPIEASTPLRRTD 122
           ASASTSV+LQA NPS EFLP +P+                  PSS S+P E STP R  D
Sbjct: 61  ASASTSVNLQASNPSSEFLPTQPSSNLPPAESNPSSDSLPTEPSSSSVPAEVSTPSRLVD 120

Query: 123 LPSCSGTDHVSEPKSFYSRRNPTNKRKSVEITDAPFVFSTASKVETRVEKKDGYSSPSKA 182
           LPS SGTD V EP+SFYSRR+P N+RKS E   APF+FSTASK+ TR EK+   SSPS+A
Sbjct: 121 LPSSSGTDRVPEPQSFYSRRHPANRRKSTETAAAPFIFSTASKILTRGEKRAADSSPSRA 180

Query: 183 KTVPYRKRQRSSIYGDDECEFVLPREFVEQQKAYFSEVDAFELPMEEAKSSDSE 215
           +TVPYRKRQR +IYG+DE +  LPREFVE+QKAYFSEVDAFEL +EEAKSSDSE
Sbjct: 181 RTVPYRKRQRGAIYGEDESKIELPREFVEKQKAYFSEVDAFELLVEEAKSSDSE 234

BLAST of Sed0024289 vs. NCBI nr
Match: XP_022991070.1 (uncharacterized protein LOC111487776 isoform X1 [Cucurbita maxima])

HSP 1 Score: 266.2 bits (679), Expect = 2.5e-67
Identity = 156/234 (66.67%), Postives = 178/234 (76.07%), Query Frame = 0

Query: 3   MESKKRN---RKPLSDCTNIVLSSQSPASNFSAAIKSRKRVIKSVVKEVVNDEKKRESSF 62
           MES+KRN   RKPL+DCTN VLSSQS ASN SAAIK RKRV+K  VK+VVN+EK+  SSF
Sbjct: 1   MESQKRNLRVRKPLADCTNTVLSSQSSASNLSAAIKPRKRVVKPAVKDVVNNEKEGVSSF 60

Query: 63  ASASTSVDLQA-NPSFEFLPAEPN------------------PSSCSLPIEASTPLRRTD 122
           ASASTSV+LQA NPS +FLP +P+                  PSS SLP E STP R  D
Sbjct: 61  ASASTSVNLQASNPSSDFLPTQPSSNLPPAESTPTSDSLPTEPSSSSLPAEVSTPSRLVD 120

Query: 123 LPSCSGTDHVSEPKSFYSRRNPTNKRKSVEITDAPFVFSTASKVETRVEKKDGYSSPSKA 182
           LPS SGTD V EP+SFYSRR+P N+RKS E   APFVFSTASK+ TR EK+   SSPS+A
Sbjct: 121 LPSSSGTDRVPEPQSFYSRRHPANRRKSTETAAAPFVFSTASKILTRGEKRAADSSPSRA 180

Query: 183 KTVPYRKRQRSSIYGDDECEFVLPREFVEQQKAYFSEVDAFELPMEEAKSSDSE 215
           +TVPYRKRQR +IYG+DE +  LPREFVE+QKAYFSEVDAFEL +EEAKSSDSE
Sbjct: 181 RTVPYRKRQRGTIYGEDESKIELPREFVEKQKAYFSEVDAFELLVEEAKSSDSE 234

BLAST of Sed0024289 vs. NCBI nr
Match: XP_022134150.1 (uncharacterized protein LOC111006488 isoform X3 [Momordica charantia])

HSP 1 Score: 265.8 bits (678), Expect = 3.3e-67
Identity = 158/258 (61.24%), Postives = 179/258 (69.38%), Query Frame = 0

Query: 3   MESKKRN---RKPLSDCTNIVLSSQSPASNFSAAIKSRKRVIKSVVKEVVNDEKKRESSF 62
           ME+ KRN   RKPLSDCTN VLSSQS ASNFS+ IK R+RVIKS VK+ VN+EKK ESSF
Sbjct: 1   MEAPKRNLRARKPLSDCTNTVLSSQSSASNFSSVIKPRRRVIKSAVKDAVNNEKKGESSF 60

Query: 63  ASASTSVDLQA------------NPSFEFLPAEPN------------------------- 122
            SAS S++LQA            NPS + LP EPN                         
Sbjct: 61  TSASASLNLQASNPSSDCLPTEPNPSSDCLPTEPNSSSDCLPTEPNASSDCLPTEPNASS 120

Query: 123 ------PSSCSLPIEASTPLRRTDLPSCSGTDHVSEPKSFYSRRNPTNKRKSVEITDAPF 182
                 PSS SLP EASTP RR DLPS SGTD VSEP+SFYSRR+PTNKRKS EI   PF
Sbjct: 121 DCLPTEPSSSSLPAEASTPTRRADLPSSSGTDRVSEPQSFYSRRHPTNKRKSTEIAFTPF 180

Query: 183 VFSTASKVETRVEKKDGYSSPSKAKTVPYRKRQRSSIYGDDECEFVLPREFVEQQKAYFS 215
           +F+TASK+ T  EK+DGYSSPSKA+TVP +KRQR +IYG DE +  LPREFVE+QKAYFS
Sbjct: 181 IFATASKIHTMGEKRDGYSSPSKARTVPCKKRQRGTIYGKDESKIELPREFVEKQKAYFS 240

BLAST of Sed0024289 vs. NCBI nr
Match: XP_022952551.1 (uncharacterized protein LOC111455207 isoform X1 [Cucurbita moschata] >KAG6602594.1 hypothetical protein SDJN03_07827, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033272.1 hypothetical protein SDJN02_07326 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 263.5 bits (672), Expect = 1.6e-66
Identity = 154/234 (65.81%), Postives = 178/234 (76.07%), Query Frame = 0

Query: 3   MESKKRN---RKPLSDCTNIVLSSQSPASNFSAAIKSRKRVIKSVVKEVVNDEKKRESSF 62
           MES+KRN   RKPL+DCTN VLSSQS ASN SAAIK RKRV+KS VK+VVN+EK+  SS 
Sbjct: 1   MESQKRNLRVRKPLADCTNTVLSSQSSASNLSAAIKPRKRVVKSAVKDVVNNEKEGVSSL 60

Query: 63  ASASTSVDLQA-NPSFEFLPAEPN------------------PSSCSLPIEASTPLRRTD 122
           ASASTSV+LQA NPS EFLP +P+                  PSS S+P E STP R  D
Sbjct: 61  ASASTSVNLQASNPSSEFLPTQPSSNLPPAESNPSSDSLPTEPSSSSVPAEVSTPSRFVD 120

Query: 123 LPSCSGTDHVSEPKSFYSRRNPTNKRKSVEITDAPFVFSTASKVETRVEKKDGYSSPSKA 182
           LPS SGTD V EP+SFYSRR+P N+RKS E   APF+FSTASK+ +R EK+   SSPS+A
Sbjct: 121 LPSSSGTDRVPEPQSFYSRRHPANRRKSTETAAAPFIFSTASKILSRGEKRAADSSPSRA 180

Query: 183 KTVPYRKRQRSSIYGDDECEFVLPREFVEQQKAYFSEVDAFELPMEEAKSSDSE 215
           +TVPYRKRQR +IYG+DE +  LPREFVE+QKAYFSEVDAFEL +EEAKSSDSE
Sbjct: 181 RTVPYRKRQRGTIYGEDESKIELPREFVEKQKAYFSEVDAFELLVEEAKSSDSE 234

BLAST of Sed0024289 vs. ExPASy TrEMBL
Match: A0A6J1JRU8 (uncharacterized protein LOC111487776 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487776 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 1.2e-67
Identity = 156/234 (66.67%), Postives = 178/234 (76.07%), Query Frame = 0

Query: 3   MESKKRN---RKPLSDCTNIVLSSQSPASNFSAAIKSRKRVIKSVVKEVVNDEKKRESSF 62
           MES+KRN   RKPL+DCTN VLSSQS ASN SAAIK RKRV+K  VK+VVN+EK+  SSF
Sbjct: 1   MESQKRNLRVRKPLADCTNTVLSSQSSASNLSAAIKPRKRVVKPAVKDVVNNEKEGVSSF 60

Query: 63  ASASTSVDLQA-NPSFEFLPAEPN------------------PSSCSLPIEASTPLRRTD 122
           ASASTSV+LQA NPS +FLP +P+                  PSS SLP E STP R  D
Sbjct: 61  ASASTSVNLQASNPSSDFLPTQPSSNLPPAESTPTSDSLPTEPSSSSLPAEVSTPSRLVD 120

Query: 123 LPSCSGTDHVSEPKSFYSRRNPTNKRKSVEITDAPFVFSTASKVETRVEKKDGYSSPSKA 182
           LPS SGTD V EP+SFYSRR+P N+RKS E   APFVFSTASK+ TR EK+   SSPS+A
Sbjct: 121 LPSSSGTDRVPEPQSFYSRRHPANRRKSTETAAAPFVFSTASKILTRGEKRAADSSPSRA 180

Query: 183 KTVPYRKRQRSSIYGDDECEFVLPREFVEQQKAYFSEVDAFELPMEEAKSSDSE 215
           +TVPYRKRQR +IYG+DE +  LPREFVE+QKAYFSEVDAFEL +EEAKSSDSE
Sbjct: 181 RTVPYRKRQRGTIYGEDESKIELPREFVEKQKAYFSEVDAFELLVEEAKSSDSE 234

BLAST of Sed0024289 vs. ExPASy TrEMBL
Match: A0A6J1BXA7 (uncharacterized protein LOC111006488 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111006488 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.6e-67
Identity = 158/258 (61.24%), Postives = 179/258 (69.38%), Query Frame = 0

Query: 3   MESKKRN---RKPLSDCTNIVLSSQSPASNFSAAIKSRKRVIKSVVKEVVNDEKKRESSF 62
           ME+ KRN   RKPLSDCTN VLSSQS ASNFS+ IK R+RVIKS VK+ VN+EKK ESSF
Sbjct: 1   MEAPKRNLRARKPLSDCTNTVLSSQSSASNFSSVIKPRRRVIKSAVKDAVNNEKKGESSF 60

Query: 63  ASASTSVDLQA------------NPSFEFLPAEPN------------------------- 122
            SAS S++LQA            NPS + LP EPN                         
Sbjct: 61  TSASASLNLQASNPSSDCLPTEPNPSSDCLPTEPNSSSDCLPTEPNASSDCLPTEPNASS 120

Query: 123 ------PSSCSLPIEASTPLRRTDLPSCSGTDHVSEPKSFYSRRNPTNKRKSVEITDAPF 182
                 PSS SLP EASTP RR DLPS SGTD VSEP+SFYSRR+PTNKRKS EI   PF
Sbjct: 121 DCLPTEPSSSSLPAEASTPTRRADLPSSSGTDRVSEPQSFYSRRHPTNKRKSTEIAFTPF 180

Query: 183 VFSTASKVETRVEKKDGYSSPSKAKTVPYRKRQRSSIYGDDECEFVLPREFVEQQKAYFS 215
           +F+TASK+ T  EK+DGYSSPSKA+TVP +KRQR +IYG DE +  LPREFVE+QKAYFS
Sbjct: 181 IFATASKIHTMGEKRDGYSSPSKARTVPCKKRQRGTIYGKDESKIELPREFVEKQKAYFS 240

BLAST of Sed0024289 vs. ExPASy TrEMBL
Match: A0A6J1GKJ2 (uncharacterized protein LOC111455207 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455207 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 7.9e-67
Identity = 154/234 (65.81%), Postives = 178/234 (76.07%), Query Frame = 0

Query: 3   MESKKRN---RKPLSDCTNIVLSSQSPASNFSAAIKSRKRVIKSVVKEVVNDEKKRESSF 62
           MES+KRN   RKPL+DCTN VLSSQS ASN SAAIK RKRV+KS VK+VVN+EK+  SS 
Sbjct: 1   MESQKRNLRVRKPLADCTNTVLSSQSSASNLSAAIKPRKRVVKSAVKDVVNNEKEGVSSL 60

Query: 63  ASASTSVDLQA-NPSFEFLPAEPN------------------PSSCSLPIEASTPLRRTD 122
           ASASTSV+LQA NPS EFLP +P+                  PSS S+P E STP R  D
Sbjct: 61  ASASTSVNLQASNPSSEFLPTQPSSNLPPAESNPSSDSLPTEPSSSSVPAEVSTPSRFVD 120

Query: 123 LPSCSGTDHVSEPKSFYSRRNPTNKRKSVEITDAPFVFSTASKVETRVEKKDGYSSPSKA 182
           LPS SGTD V EP+SFYSRR+P N+RKS E   APF+FSTASK+ +R EK+   SSPS+A
Sbjct: 121 LPSSSGTDRVPEPQSFYSRRHPANRRKSTETAAAPFIFSTASKILSRGEKRAADSSPSRA 180

Query: 183 KTVPYRKRQRSSIYGDDECEFVLPREFVEQQKAYFSEVDAFELPMEEAKSSDSE 215
           +TVPYRKRQR +IYG+DE +  LPREFVE+QKAYFSEVDAFEL +EEAKSSDSE
Sbjct: 181 RTVPYRKRQRGTIYGEDESKIELPREFVEKQKAYFSEVDAFELLVEEAKSSDSE 234

BLAST of Sed0024289 vs. ExPASy TrEMBL
Match: A0A6J1JPQ1 (cell wall protein RBR3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111487776 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 7.4e-65
Identity = 154/234 (65.81%), Postives = 176/234 (75.21%), Query Frame = 0

Query: 3   MESKKRN---RKPLSDCTNIVLSSQSPASNFSAAIKSRKRVIKSVVKEVVNDEKKRESSF 62
           MES+KRN   RKPL+DCTN VLSSQS ASN SAAIK RKRV+K  VK+VVN+EK+  SSF
Sbjct: 1   MESQKRNLRVRKPLADCTNTVLSSQSSASNLSAAIKPRKRVVKPAVKDVVNNEKEGVSSF 60

Query: 63  ASASTSVDLQA-NPSFEFLPAEPN------------------PSSCSLPIEASTPLRRTD 122
           ASASTSV+LQA NPS +FLP +P+                  PSS SLP E STP R  D
Sbjct: 61  ASASTSVNLQASNPSSDFLPTQPSSNLPPAESTPTSDSLPTEPSSSSLPAEVSTPSRLVD 120

Query: 123 LPSCSGTDHVSEPKSFYSRRNPTNKRKSVEITDAPFVFSTASKVETRVEKKDGYSSPSKA 182
           LPS S  D V EP+SFYSRR+P N+RKS E   APFVFSTASK+ TR EK+   SSPS+A
Sbjct: 121 LPSSS--DRVPEPQSFYSRRHPANRRKSTETAAAPFVFSTASKILTRGEKRAADSSPSRA 180

Query: 183 KTVPYRKRQRSSIYGDDECEFVLPREFVEQQKAYFSEVDAFELPMEEAKSSDSE 215
           +TVPYRKRQR +IYG+DE +  LPREFVE+QKAYFSEVDAFEL +EEAKSSDSE
Sbjct: 181 RTVPYRKRQRGTIYGEDESKIELPREFVEKQKAYFSEVDAFELLVEEAKSSDSE 232

BLAST of Sed0024289 vs. ExPASy TrEMBL
Match: A0A6J1C164 (uncharacterized protein LOC111006488 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111006488 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 9.6e-65
Identity = 158/271 (58.30%), Postives = 179/271 (66.05%), Query Frame = 0

Query: 3   MESKKRN---RKPLSDCTNIVLSSQSPASNFSAAIKSRKRVIKSVVKEVVNDEKKRESSF 62
           ME+ KRN   RKPLSDCTN VLSSQS ASNFS+ IK R+RVIKS VK+ VN+EKK ESSF
Sbjct: 1   MEAPKRNLRARKPLSDCTNTVLSSQSSASNFSSVIKPRRRVIKSAVKDAVNNEKKGESSF 60

Query: 63  ASASTSVDLQA------------NPSFEFLPAEPN------------------------- 122
            SAS S++LQA            NPS + LP EPN                         
Sbjct: 61  TSASASLNLQASNPSSDCLPTEPNPSSDCLPTEPNSSSDCLPTEPNASSDCLPTEPNASS 120

Query: 123 ------PSSCSLPIEASTPLRRTDLPSCSGTDHVSEPKSFYSRRNPTNKRKSVEITDAPF 182
                 PSS SLP EASTP RR DLPS SGTD VSEP+SFYSRR+PTNKRKS EI   PF
Sbjct: 121 DCLPTEPSSSSLPAEASTPTRRADLPSSSGTDRVSEPQSFYSRRHPTNKRKSTEIAFTPF 180

Query: 183 VFSTASKVETRVEKKDGYSSPSKAKTVPYRK-------------RQRSSIYGDDECEFVL 215
           +F+TASK+ T  EK+DGYSSPSKA+TVP +K             RQR +IYG DE +  L
Sbjct: 181 IFATASKIHTMGEKRDGYSSPSKARTVPCKKQNMYSDLSPRNVMRQRGTIYGKDESKIEL 240

BLAST of Sed0024289 vs. TAIR 10
Match: AT3G56250.1 (unknown protein; Has 109 Blast hits to 83 proteins in 41 species: Archae - 0; Bacteria - 6; Metazoa - 18; Fungi - 20; Plants - 21; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). )

HSP 1 Score: 70.1 bits (170), Expect = 2.5e-12
Identity = 69/215 (32.09%), Postives = 113/215 (52.56%), Query Frame = 0

Query: 10  RKPLSDCTNIV-LSSQSPASNFSAAIKSRKRVIKSVVKEVVNDEKKRESSFASASTSVDL 69
           RKPL+DCTN V  SSQ  +S+   A  S    +K +V++    EK ++ +  +++T+ ++
Sbjct: 13  RKPLADCTNTVSRSSQQSSSSVKFANPSLTSSLKRLVEQTTLKEKPKDVN--TSATAPEI 72

Query: 70  QANPSFEFLPAEPNPSSCSLPIEASTPLRRTDLPSCSGTD--HVSEPKSFYS-RRNPTNK 129
            + P    +       S  L   AS P R     S  G      +EP S Y+ RR  + +
Sbjct: 73  ASRPITTDVRPVTRRMSADLASPASAPSRPQTSRSDMGVSDKDFTEPWSVYTVRRKASGQ 132

Query: 130 RKSVEITDAPFVFSTASKVETRVE----KKDGYSSPSKAKT--VPYRKRQRSSIYGDDEC 189
           ++S    DA    S A+++   +     KK   +S +K KT  V  +KRQR+     ++ 
Sbjct: 133 KRS---KDASSSTSAAARIRLDLSSSSGKKTRQASENKKKTLKVAPKKRQRTVKQEKEDP 192

Query: 190 EFVLPREFVEQQKAYFSEVDAFELPMEEAKSSDSE 215
                ++++E+QKAYF+E+DAFELP+EE  +SDS+
Sbjct: 193 VSAACQDYIEKQKAYFAEIDAFELPVEEVSNSDSD 222

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038884349.13.0e-6866.67uncharacterized protein LOC120075210 isoform X3 [Benincasa hispida][more]
XP_023515045.11.9e-6766.24uncharacterized protein LOC111779162 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022991070.12.5e-6766.67uncharacterized protein LOC111487776 isoform X1 [Cucurbita maxima][more]
XP_022134150.13.3e-6761.24uncharacterized protein LOC111006488 isoform X3 [Momordica charantia][more]
XP_022952551.11.6e-6665.81uncharacterized protein LOC111455207 isoform X1 [Cucurbita moschata] >KAG6602594... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1JRU81.2e-6766.67uncharacterized protein LOC111487776 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1BXA71.6e-6761.24uncharacterized protein LOC111006488 isoform X3 OS=Momordica charantia OX=3673 G... [more]
A0A6J1GKJ27.9e-6765.81uncharacterized protein LOC111455207 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1JPQ17.4e-6565.81cell wall protein RBR3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1114877... [more]
A0A6J1C1649.6e-6558.30uncharacterized protein LOC111006488 isoform X1 OS=Momordica charantia OX=3673 G... [more]
Match NameE-valueIdentityDescription
AT3G56250.12.5e-1232.09unknown protein; Has 109 Blast hits to 83 proteins in 41 species: Archae - 0; Ba... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 97..118
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 97..124
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 149..170
NoneNo IPR availablePANTHERPTHR35740OS12G0111700 PROTEINcoord: 3..214
NoneNo IPR availablePANTHERPTHR35740:SF1OS12G0111700 PROTEINcoord: 3..214

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0024289.1Sed0024289.1mRNA