Sed0024086 (gene) Chayote v1

Overview


Name	Sed0024086
Type	gene
Organism	Sechium edule (Chayote v1)
Description	ribonuclease III domain-containing protein RNC1, chloroplastic-like
Location	LG11: 557214 .. 558513 (-)
RNA-Seq Expression	Sed0024086
Synteny	Sed0024086

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCGTTTCCATTTCAACTCCAGACCAATTCATCTCTTGCATCCACAAGCTCATCGTTGAAATCCACACATTAGAGGAAGTCTCCAATTTTCTCATGGTGGTAATTGCAATTTTACCTGTCAAAGCATCCAAACTTAATGGAACTTTCTTCTTTTTTGTTCAACTTTCATCCTCGACCCCCAATTTATCTTTCTCTTCTTCCTTAACCCCATTTCATGTAAAAACTACACCAACAATCCCAATTTCTCAAACCTCACATCGGAAAATTTGTGTATTTTTGCAGTCGCAGTTGACCCACAACAAAAAATTGCCCAAAAACAACCTTCAAAGACTACTCAAAGAGGCGGTGGAGCAAAAACGAGCCACATCTCCAAAGAAGAAGGTACCCCCAAGAAGGTTTATTCTTAGACCGCCATTAGATGATAAGAGATTAGCGAAAAGGTTTCTTAATATCCCTCAATTAAAGGTTAGTGATAAAGGTTAGTGATAAATTGTTACTTTGTGTATGCAAGGTGTTTGATGAAATGACTGAAGGTCTTGGAGCTTGGAAGATAGATTGGAAGATAGATTCAACTTTTACATTGGCTTTCTCTATATTTTTCTCTCAAGTATTCTTCGAGAACTTTTTTTTTTAATTCATCTCTTTCTCTAATAAACAGAGGCCTTGGTGCTTGGAAGTTAGGATCAGGTTTTGCTTCTGTTTTGTTTTTGTTTTTTGTTTGTTTGTTAATTTCTTGAGTATTTGGTCGATGTGTAAATGAGCAGCCAATAAACCTTGTTCTATACTGATATTTGCAGGAAAGATCAAGAGACAAACATAAGTTGAAAGGTCTGCTACAATATCATAGATATTTTGAATGCACCAAAGGAAGAAAACCAGAAATACATGAGAGGAACAGACCCGAGAGCTTGTTTTTAAAGCATAAGGGAGAAAACGGAAACCTGAAAAAAAATGGACAAGAAATACATGATTTTGGAGCTAAGCAGCAGACTTGACATTGAAACAAAAACACACAAGTAAGGTAACTTTGTCTTTTTGAGATTTGAGCATTAATCTTCAAGATTTAGACACTGTTGGAATGTGTTTTGTCTTAGTCAATGCTACTGTAGGACTGTTGTTATTGTACTCTTCTTGGTTGTCATTGTCCTTCTTTCGACTGTTAGGCAAGCTGTAAATTTCATATATTTTTTCATTGCTTTCAGATCAGAGTGGAGTGAAGTTGATGTTCTTGAAGATTTGAGGATGAATTTTGATTTGTTAAAATCATGGGATTTTTGGGACTCTTATCTGGTTGTTTTAG

mRNA sequence

TTCGTTTCCATTTCAACTCCAGACCAATTCATCTCTTGCATCCACAAGCTCATCGTTGAAATCCACACATTAGAGGAAGTCTCCAATTTTCTCATGGTGGTAATTGCAATTTTACCTGTCAAAGCATCCAAACTTAATGGAACTTTCTTCTTTTTTGTTCAACTTTCATCCTCGACCCCCAATTTATCTTTCTCTTCTTCCTTAACCCCATTTCATGTAAAAACTACACCAACAATCCCAATTTCTCAAACCTCACATCGGAAAATTTGTGTATTTTTGCAGTCGCAGTTGACCCACAACAAAAAATTGCCCAAAAACAACCTTCAAAGACTACTCAAAGAGGCGGTGGAGCAAAAACGAGCCACATCTCCAAAGAAGAAGGTGTTTGATGAAATGACTGAAGGTCTTGGAGCTTGGAAGATAGATTGGAAGATAGATTCAACTTTTACATTGGCTTTCTCTATATTTTTCTCTCAAGAAAGATCAAGAGACAAACATAAGTTGAAAGGTCTGCTACAATATCATAGATATTTTGAATGCACCAAAGGAAGAAAACCAGAAATACATGAGAGGAACAGACCCGAGAGCTTGTTTTTAAAGCATAAGGGAGAAAACGGAAACCTGAAAAAAAATGGACAAGAAATACATGATTTTGGAGCTAAGCAGCAGACTTGACATTGAAACAAAAACACACAAGTAAGATCAGAGTGGAGTGAAGTTGATGTTCTTGAAGATTTGAGGATGAATTTTGATTTGTTAAAATCATGGGATTTTTGGGACTCTTATCTGGTTGTTTTAG

Coding sequence (CDS)

ATGGTGGTAATTGCAATTTTACCTGTCAAAGCATCCAAACTTAATGGAACTTTCTTCTTTTTTGTTCAACTTTCATCCTCGACCCCCAATTTATCTTTCTCTTCTTCCTTAACCCCATTTCATGTAAAAACTACACCAACAATCCCAATTTCTCAAACCTCACATCGGAAAATTTGTGTATTTTTGCAGTCGCAGTTGACCCACAACAAAAAATTGCCCAAAAACAACCTTCAAAGACTACTCAAAGAGGCGGTGGAGCAAAAACGAGCCACATCTCCAAAGAAGAAGGTGTTTGATGAAATGACTGAAGGTCTTGGAGCTTGGAAGATAGATTGGAAGATAGATTCAACTTTTACATTGGCTTTCTCTATATTTTTCTCTCAAGAAAGATCAAGAGACAAACATAAGTTGAAAGGTCTGCTACAATATCATAGATATTTTGAATGCACCAAAGGAAGAAAACCAGAAATACATGAGAGGAACAGACCCGAGAGCTTGTTTTTAAAGCATAAGGGAGAAAACGGAAACCTGAAAAAAAATGGACAAGAAATACATGATTTTGGAGCTAAGCAGCAGACTTGA

Protein sequence

MVVIAILPVKASKLNGTFFFFVQLSSSTPNLSFSSSLTPFHVKTTPTIPISQTSHRKICVFLQSQLTHNKKLPKNNLQRLLKEAVEQKRATSPKKKVFDEMTEGLGAWKIDWKIDSTFTLAFSIFFSQERSRDKHKLKGLLQYHRYFECTKGRKPEIHERNRPESLFLKHKGENGNLKKNGQEIHDFGAKQQT

Homology

[Close]

BLAST of Sed0024086 vs. NCBI nr
Match: XP_023543359.1 (ribonuclease III domain-containing protein RNC1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-08
Identity = 46/78 (58.97%), Postives = 55/78 (70.51%), Query Frame = 0


Query: 21 FVQLSSSTPNLSFSSSLTPFHVKTTPTIP-ISQTSHRKICVFLQSQLTHNKKLPKNNLQR 80
          FV+LSS TPN SFSSSLTPF VK  P  P +S  S   + +F  + +   ++LPKNN QR
Sbjct: 7  FVKLSSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGSLRIFAVA-VDPQQELPKNNPQR 66

Query: 81 LLKEAVEQKRATSPKKKV 98
          LLKE  E+KRATSPKKKV
Sbjct: 67 LLKELEERKRATSPKKKV 83

[Close]

BLAST of Sed0024086 vs. NCBI nr
Match: XP_022977519.1 (ribonuclease III domain-containing protein RNC1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-08
Identity = 46/78 (58.97%), Postives = 55/78 (70.51%), Query Frame = 0


Query: 21 FVQLSSSTPNLSFSSSLTPFHVKTTPTIP-ISQTSHRKICVFLQSQLTHNKKLPKNNLQR 80
          FV+LSS TPN SFSSSLTPF VK  P  P +S  S   + +F  + +   ++LPKNN QR
Sbjct: 7  FVKLSSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGSLRIFAVA-VDPRQELPKNNPQR 66

Query: 81 LLKEAVEQKRATSPKKKV 98
          LLKE  E+KRATSPKKKV
Sbjct: 67 LLKELEERKRATSPKKKV 83

[Close]

BLAST of Sed0024086 vs. NCBI nr
Match: KAA0036433.1 (ribonuclease III domain-containing protein RNC1 [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 1.4e-08
Identity = 44/77 (57.14%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 21 FVQLSSSTPNLSFSSSLTPFHVKTTPTIPISQTSHRKICVFLQSQLTHNKKLPKNNLQRL 80
          FV+LSS +PN SFSSSLTPF VK  P  PI   S           +   ++LPKNN QRL
Sbjct: 7  FVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNSSSGNLRIFAVAVDPQQELPKNNPQRL 66

Query: 81 LKEAVEQKRATSPKKKV 98
          LKE  E+KRATSPKKKV
Sbjct: 67 LKELAERKRATSPKKKV 83

[Close]

BLAST of Sed0024086 vs. NCBI nr
Match: XP_022949934.1 (ribonuclease III domain-containing protein RNC1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-08
Identity = 46/78 (58.97%), Postives = 55/78 (70.51%), Query Frame = 0


Query: 21 FVQLSSSTPNLSFSSSLTPFHVKTTPTIP-ISQTSHRKICVFLQSQLTHNKKLPKNNLQR 80
          FV+LSS TPN SFSSSLTPF VK  P  P +S  S   + +F  + +   ++LPKNN QR
Sbjct: 7  FVKLSSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGGLRIFAVA-VDPQQELPKNNPQR 66

Query: 81 LLKEAVEQKRATSPKKKV 98
          LLKE  E+KRATSPKKKV
Sbjct: 67 LLKELEERKRATSPKKKV 83

[Close]

BLAST of Sed0024086 vs. NCBI nr
Match: KAG6604142.1 (Ribonuclease III domain-containing protein RNC1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-08
Identity = 46/78 (58.97%), Postives = 55/78 (70.51%), Query Frame = 0


Query: 21 FVQLSSSTPNLSFSSSLTPFHVKTTPTIP-ISQTSHRKICVFLQSQLTHNKKLPKNNLQR 80
          FV+LSS TPN SFSSSLTPF VK  P  P +S  S   + +F  + +   ++LPKNN QR
Sbjct: 7  FVKLSSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGGLRIFAVA-VDPQQELPKNNPQR 66

Query: 81 LLKEAVEQKRATSPKKKV 98
          LLKE  E+KRATSPKKKV
Sbjct: 67 LLKELEERKRATSPKKKV 83

[Close]

BLAST of Sed0024086 vs. ExPASy Swiss-Prot
Match: Q9SZV0 (Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RNC1 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.6e-05
Identity = 32/73 (43.84%), Postives = 45/73 (61.64%), Query Frame = 0


Query: 25 SSSTPNLSFSSSLTPFHVKTTPTIPISQTSHRKICVFLQSQLTHNKKLPKNNLQRLLKEA 84
          SSS P +SFSSS++ F  KT   +  S+  + +IC    S     + LP+++ QRLLKE 
Sbjct: 17 SSSAPEISFSSSISQFPSKTQSILTKSRFQNLRICA---SVTAETQGLPRDSPQRLLKEL 76

Query: 85 VEQKRATSPKKKV 98
           ++K AT PKKKV
Sbjct: 77 AQRKTATGPKKKV 86

[Close]

BLAST of Sed0024086 vs. ExPASy TrEMBL
Match: A0A6J1IRK8 (ribonuclease III domain-containing protein RNC1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111477828 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.2e-09
Identity = 46/78 (58.97%), Postives = 55/78 (70.51%), Query Frame = 0


Query: 21 FVQLSSSTPNLSFSSSLTPFHVKTTPTIP-ISQTSHRKICVFLQSQLTHNKKLPKNNLQR 80
          FV+LSS TPN SFSSSLTPF VK  P  P +S  S   + +F  + +   ++LPKNN QR
Sbjct: 7  FVKLSSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGSLRIFAVA-VDPRQELPKNNPQR 66

Query: 81 LLKEAVEQKRATSPKKKV 98
          LLKE  E+KRATSPKKKV
Sbjct: 67 LLKELEERKRATSPKKKV 83

[Close]

BLAST of Sed0024086 vs. ExPASy TrEMBL
Match: A0A5A7T0M4 (Ribonuclease III domain-containing protein RNC1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18G002390 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 6.8e-09
Identity = 44/77 (57.14%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 21 FVQLSSSTPNLSFSSSLTPFHVKTTPTIPISQTSHRKICVFLQSQLTHNKKLPKNNLQRL 80
          FV+LSS +PN SFSSSLTPF VK  P  PI   S           +   ++LPKNN QRL
Sbjct: 7  FVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNSSSGNLRIFAVAVDPQQELPKNNPQRL 66

Query: 81 LKEAVEQKRATSPKKKV 98
          LKE  E+KRATSPKKKV
Sbjct: 67 LKELAERKRATSPKKKV 83

[Close]

BLAST of Sed0024086 vs. ExPASy TrEMBL
Match: A0A6J1GEC3 (ribonuclease III domain-containing protein RNC1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111453180 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 8.8e-09
Identity = 46/78 (58.97%), Postives = 55/78 (70.51%), Query Frame = 0


Query: 21 FVQLSSSTPNLSFSSSLTPFHVKTTPTIP-ISQTSHRKICVFLQSQLTHNKKLPKNNLQR 80
          FV+LSS TPN SFSSSLTPF VK  P  P +S  S   + +F  + +   ++LPKNN QR
Sbjct: 7  FVKLSSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGGLRIFAVA-VDPQQELPKNNPQR 66

Query: 81 LLKEAVEQKRATSPKKKV 98
          LLKE  E+KRATSPKKKV
Sbjct: 67 LLKELEERKRATSPKKKV 83

[Close]

BLAST of Sed0024086 vs. ExPASy TrEMBL
Match: A0A6J1BVK6 (ribonuclease III domain-containing protein RNC1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111005910 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.0e-08
Identity = 42/77 (54.55%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 21 FVQLSSSTPNLSFSSSLTPFHVKTTPTIPISQTSHRKICVFLQSQLTHNKKLPKNNLQRL 80
          FVQL+S TPN SFSSSLTPFH K  P  P                +   ++LPKNN QRL
Sbjct: 7  FVQLASPTPNYSFSSSLTPFHFKIYPNNPSFPNPTSGNLRIFAVAVDPQQELPKNNPQRL 66

Query: 81 LKEAVEQKRATSPKKKV 98
          LKE  E+KRATSPKK+V
Sbjct: 67 LKELAERKRATSPKKRV 83

[Close]

BLAST of Sed0024086 vs. ExPASy TrEMBL
Match: A0A5D3CNU2 (Ribonuclease III domain-containing protein RNC1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004200 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.6e-08
Identity = 43/77 (55.84%), Postives = 49/77 (63.64%), Query Frame = 0


Query: 21 FVQLSSSTPNLSFSSSLTPFHVKTTPTIPISQTSHRKICVFLQSQLTHNKKLPKNNLQRL 80
          FV+LSS +PN SFSSSLTPF VK  P  PI               +   ++LPKNN QRL
Sbjct: 7  FVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSGNLRIFAVAVDPQQELPKNNPQRL 66

Query: 81 LKEAVEQKRATSPKKKV 98
          LKE  E+KRATSPKKKV
Sbjct: 67 LKELAERKRATSPKKKV 83

[Close]

BLAST of Sed0024086 vs. TAIR 10
Match: AT4G37510.1 (Ribonuclease III family protein )

HSP 1 Score: 50.4 bits (119), Expect = 1.8e-06
Identity = 32/73 (43.84%), Postives = 45/73 (61.64%), Query Frame = 0


Query: 25 SSSTPNLSFSSSLTPFHVKTTPTIPISQTSHRKICVFLQSQLTHNKKLPKNNLQRLLKEA 84
          SSS P +SFSSS++ F  KT   +  S+  + +IC    S     + LP+++ QRLLKE 
Sbjct: 17 SSSAPEISFSSSISQFPSKTQSILTKSRFQNLRICA---SVTAETQGLPRDSPQRLLKEL 76

Query: 85 VEQKRATSPKKKV 98
           ++K AT PKKKV
Sbjct: 77 AQRKTATGPKKKV 86

The following BLAST results are available for this feature:

BLAST of Sed0024086 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023543359.1	1.1e-08	58.97	ribonuclease III domain-containing protein RNC1, chloroplastic-like [Cucurbita p...	[more]
XP_022977519.1	1.1e-08	58.97	ribonuclease III domain-containing protein RNC1, chloroplastic-like [Cucurbita m...	[more]
KAA0036433.1	1.4e-08	57.14	ribonuclease III domain-containing protein RNC1 [Cucumis melo var. makuwa]	[more]
XP_022949934.1	1.8e-08	58.97	ribonuclease III domain-containing protein RNC1, chloroplastic-like [Cucurbita m...	[more]
KAG6604142.1	1.8e-08	58.97	Ribonuclease III domain-containing protein RNC1, chloroplastic, partial [Cucurbi...	[more]

BLAST of Sed0024086 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZV0	2.6e-05	43.84	Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Arabidopsis th...	[more]

BLAST of Sed0024086 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IRK8	5.2e-09	58.97	ribonuclease III domain-containing protein RNC1, chloroplastic-like OS=Cucurbita...	[more]
A0A5A7T0M4	6.8e-09	57.14	Ribonuclease III domain-containing protein RNC1 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A6J1GEC3	8.8e-09	58.97	ribonuclease III domain-containing protein RNC1, chloroplastic-like OS=Cucurbita...	[more]
A0A6J1BVK6	2.0e-08	54.55	ribonuclease III domain-containing protein RNC1, chloroplastic OS=Momordica char...	[more]
A0A5D3CNU2	2.6e-08	55.84	Ribonuclease III domain-containing protein RNC1 OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of Sed0024086 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37510.1	1.8e-06	43.84	Ribonuclease III family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..193
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..185

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0024086.1	Sed0024086.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016070	RNA metabolic process
molecular_function	GO:0003723	RNA binding