Sed0023934 (gene) Chayote v1

Overview


Name	Sed0023934
Type	gene
Organism	Sechium edule (Chayote v1)
Description	transcription elongation factor B polypeptide 3
Location	LG05: 41996868 .. 42001364 (+)
RNA-Seq Expression	Sed0023934
Synteny	Sed0023934

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAGAAAAGGGTAAAAAAGAATTTCCAAGGGTTCTTCATCAACGGCGCATTGTAGCATTTGGGGAAAGAATATCGCAACATAGGGAAAAGGGAAATTATCAGATGATCAGAATTGCCGGCCAATTCGTTCGTGTTTAGGTCATCGATCCTGATCCTGTTTCAACGATTCTCCTCTCCGTTTCTCAGATTGTTGGTAAGCTCATCAAGATAACTTCTCGATCTGTTTCAGTTCATATTTGTATTTGTATTCAAATCGAATCGATTTCTTCATTTTCGTTCTTTTTAATCTTTTCTTACTGTTTAGGATGATCGAATACGGTTTCTCTTATCATTTTATTGAATCCGATCCGTTTATTTCTTCCGTTGTGATATGTATTGAAAGATTGATTCGGTATAGAACTTTTTTTTGTAGTTGTTAAGCCTGATGCTTAGTTTTTTATGTTCTGAATTACGAAATCATTTAATTGAACTGAAAATTTTTGAGTTATTGATTTTTGCGAAACTCGTGACTCGATAGGGAAATTATTTTGCTCTCTTTATTCTGACGTAATATTTTGTAGGTACAAGTGTATGGAATTTAGTTAATTCACGGTCAATTTTTGGTTAAACGAGTGCTTAAATGTGAGATGCTTGATTTTTCATGAAGAGCGGTTGGTTATTTTGAGATATATTTACTAGTTTGTTCATCAAATCAGTATTTTGTATATTGTTCGAGGAAGTTGCATCTTTATCTTCTGTGAACGGGAGAGGGAGAATTGGCTGGATTGTTCGTGATTGGAAAGGAAGCCCCAAGCTGGTTGGATGAAGGAATGATTTTAAGAATTTATATGTTAAGTTCTTGGAAGGGGTGGCTCATAGAGAGGGTCTCAAACACATTAATGAGTCTGAAATTCCTTGGTTTCCCCTTATTTTGGTTGAGTTAGATGTTTTAGAGGTTATGAAATCTAGGGAAACTTACGAGACTAGTCATTGGTTACTTTAAAAAAAAGAAAATGTAGTCATTGGTATTAATGAGTATTTTCACGTACTTTCTTATAATATTGTATTAACAAGTATTTATTTTACATAATATAATAAAAACGTATTAATGACTATGTATGCATATACTTTAAAAAATTTCTATATTTGTAATTATTTTGTGAGAAGAGTTTATCCTGCAGAATTTCCCTAAATTTATTTGTGGTGACTCCCTAAATTTTTCAGAATTCAACAATATTGTTGTTGATAGTATAGAAAAGCTAGGGATTGTGAATATTTCTCATTGCAATAGGTATTGTAATAGAGCAGCTTATGTTTTACCCCAAAAAACTTCTACGTATTTTTGTTGGAAGACCGCTTCCCTCTTCCGTGGAAAAGAGAGTTGATTTTTGAAGGGGGAATCTCCTCCTGATATTGGCTCCGTTTTGGAGGATGATTCTATGAATCTGGTGATGGAGGATTAATGAATTTTATTTTTTCTTCAAAAGAATAAAGGTCCAAGTTGTGTAAATTGATTGCTTTGTTTTTTTTTCTTACTGTTCTTAGTTTGGCAACCTGAGAAAGAAGAGATGTATCAAGCGAGAAAAATTCCATCGTTGGTTGATCTATGCGTTAACACAGCTATAGATAATCTGAGGTTTCTTGGGGATGTTGGCGAAACTGATGTGCATCTTCTAGAGCGGATTTTGCCACATTGCACTGTTGAACAGTTGATGCATGTGGAGAAAAGTTCAGAAGTGAGATTGGATGAATTTGTTTATTATTTAAATTTTTGGTTTTACTTTAGTATATATGCTAAATTTGAGGTATTGAACTTGTAGGACAGAGATCTGACTCCAGTAACTGATAAATTGTGGAAAAAATTCTATGAAAGACAGTTTGGTAGGGAAAATACCAATACTGTAATTGAGAGGATGAAGCAGAAACGAGTGGCATTTAGATGGATTCAATTATATGAGGTAGCTTTCTTTATACTTCTCTCCTGCTATTTACTTTGATATTTGAGTATTGAATGATGGTTGTTATGGTTATGACTTCTCTGAGGAATTACCATTAAAATGAAGCTATTGTTTTCAGGCAAAGATGAAGGACATAGAAAAGAATGAGAGTAAAGCTGCAGATCGAATAAAGCAAAACTATTTGAAGGAAAATGCCCGTATGTTCTACAATAATTGCATACTCTCGATAGAATTTCCTCACGCTTTTAGATTAACAAATAGTTAGATCATGTGGATGTATCATGCATGTTATTTGGTCATTGTTATCCATTCTCATCAACTGTGTTATATTAGAGGTATACTATAGGTTCATTTATGAATACAGATGTTATAGATTTTTACATGTATTTTAGGAATCAATAGTTTAATTGTTAAATCAAGTATATATTTTCTGCCAAAGGGGGCTTAGCCTAACAGTAATTGACATATTACTTCGAGTTCGACTTAAAGGTTGTAGGTTTGAATCCCTCTACCTTAAAATATTGTTGTCGTAAAAAAAGTAGATATTTTCTTAATGTATGAGATTTTGAAGCTTATATGATCATTTTAGGGAAACAAAGTCGTCAAATACAGATTTGCAGTAAGGTTCCCCCTTCGAGCAATAAGAGAAGTTTTGGAGGTAAAATTTATTGCTTCTTACATTTTTTTTGGCTTTTGGGTAATAGATTCTAACGCTGGCAGCTAAGAATTATTAACATGTTATATTTCTCTGGATTTTTCTTAGGAGGATATGGTTACAATGTGGCAAATACTAAGAACAAGCTGCTGAAGAAGGCAAAGATAGAAGTGCTTCAGAGGTAAACCCATTGAATTTATTCTCTCTTTTTTTTTTTTTTTTGAGTAACCTGAGAGTGGCCAGTCTGAAAATATTCTGCATAGTTACAACGTATGTGCCTCAAAGAAAATTAATCGTGAATTATGATCCTTCTTTGCTCAGAATCTAATGCGTTGGCAGATCCAATAGATTAATGAAATGGTCAACATATATGCTCCAATTTGAGGGGGAGTGTTAGAATAATTAATTATGAAAATATTGTAATCTTATCCTTTTATCATTAGGCCCATTAAGAGTTAGGTTAACCTTGTGCATTTGTATAAATATAACCTTAACATTCTTTTGGCTCTGTTACCATGTAAATGTTATATTTGAAAGAAAGAGTTCATGTGTTTTCTATTCATTAAAGGATTATATTTATACAAATGTACAAGGTTAACTTAATTCCTAATGGGACTCCTAATGAGCTTAATGATAAAAGAATAAGATTTCAATATTTTCATAATTAATTAGTCTAACATCCATATACTTTAAAGCTCCTATTTACCAAATTAGGTATAGAGTGGTTGCTAAGCAAATGGTTGTTATGATTGGGTGATTTGTAATTTAGTAATGGAAGCTTATATATGGTTGAAATATCTTAAATCACTAATGAACCCAGAAGTTTAAAGTGGTGTTTTGGAGTAAATTTAGCTCTATCAACCAACACTTTTCTTTATTTGTGGGTTTGAAAATTTGAGATTGTCCATCAAATTGAAGTTAACATTAATTGGTGATGAAACGACTGGTCAGATATTTGAATACATGACTTTCTATTTTGATATCAGGTTGAAACATATATATGTGTGTGTGACACTATACGAAGCTTTCACTGAGAAAATGATGAAAGTAAAAAAAGAAAAAAAAACACATAAAAAGGTCTCCAATCAATAGAAATCATACGTATAGAATAATAATTATAAAAGGGGTTTTAGGTTTAAAATATAGGCTCAAAGAGAAACATAGAATTTAATGATCTCTCCCCTCTAATTTTTTTTTTCTCTCTCTCTTTTTTTTTCTCTCTCCAAAGTCCCACAAAAACTCTCTTTATTCCAAAATAATGTTGGTTATGATTTGGTGTAAACAATCAACTCTTTTATTACTATCTAAGCAAAGAGGCCTTTTGTAATTCTCTCATACCATGTTGTTTAATCCATTTATTCATACATCCATAAAATTCTTTTCTTATTCAAAAAACGAAGTTTTCCAATACTGGTCAACATTTCTATCCTTTGTACAGTCAAGAGGTGAAAAATATAAAAGCCTGGCGGAGAAATGCAGTGCAGAAGACTTGCAAGTAAGTTGCATTTCTTAGTACCATAATTTTCGACGCCTTCGAAACTCGACGCTAACTAATATTCACTTTGTCCTCTTTCCTCGGCAGTATTCCTTCCACAAAGAAGCCAATGTCAAGTGTTCCTTCCACAAAGAAGCCAACGTTTTCCGGAACGGGCTCTGCCTCGACTTCAAAAGGTACTACCTCACATATGGCCAGAAGATGGTAGCACTTTCTTTAGCTTTGGTTTTTTTTTTAAATCTTCTACCAATTGCAAGGATCTGTATCTCTGTACTCTCACTCAGCTCAAGGCTGTGTCTTATCTTCAATTTAGTTATATCATGGTTTGATAAATTGCTCATTTTCCTGTGTATACCTTTATTACTCGTTGTTGTTTCATTATAATGCAATGTTGTTTATTTTACATTAA

mRNA sequence

GAAAGAAAAGGGTAAAAAAGAATTTCCAAGGGTTCTTCATCAACGGCGCATTGTAGCATTTGGGGAAAGAATATCGCAACATAGGGAAAAGGGAAATTATCAGATGATCAGAATTGCCGGCCAATTCGTTCGTGTTTAGGTCATCGATCCTGATCCTGTTTCAACGATTCTCCTCTCCGTTTCTCAGATTGTTGTTTGGCAACCTGAGAAAGAAGAGATGTATCAAGCGAGAAAAATTCCATCGTTGGTTGATCTATGCGTTAACACAGCTATAGATAATCTGAGGTTTCTTGGGGATGTTGGCGAAACTGATGTGCATCTTCTAGAGCGGATTTTGCCACATTGCACTGTTGAACAGTTGATGCATGTGGAGAAAAGTTCAGAAGACAGAGATCTGACTCCAGTAACTGATAAATTGTGGAAAAAATTCTATGAAAGACAGTTTGGTAGGGAAAATACCAATACTGTAATTGAGAGGATGAAGCAGAAACGAGTGGCATTTAGATGGATTCAATTATATGAGGCAAAGATGAAGGACATAGAAAAGAATGAGAGTAAAGCTGCAGATCGAATAAAGCAAAACTATTTGAAGGAAAATGCCCGGAAACAAAGTCGTCAAATACAGATTTGCAGTAAGGTTCCCCCTTCGAGCAATAAGAGAAGTTTTGGAGGAGGATATGGTTACAATGTGGCAAATACTAAGAACAAGCTGCTGAAGAAGGCAAAGATAGAAGTGCTTCAGAGTCAAGAGGTGAAAAATATAAAAGCCTGGCGGAGAAATGCAGTGCAGAAGACTTGCAATATTCCTTCCACAAAGAAGCCAATGTCAAGTGTTCCTTCCACAAAGAAGCCAACGTTTTCCGGAACGGGCTCTGCCTCGACTTCAAAAGGTACTACCTCACATATGGCCAGAAGATGGTAGCACTTTCTTTAGCTTTGGTTTTTTTTTTAAATCTTCTACCAATTGCAAGGATCTGTATCTCTGTACTCTCACTCAGCTCAAGGCTGTGTCTTATCTTCAATTTAGTTATATCATGGTTTGATAAATTGCTCATTTTCCTGTGTATACCTTTATTACTCGTTGTTGTTTCATTATAATGCAATGTTGTTTATTTTACATTAA

Coding sequence (CDS)

ATGTATCAAGCGAGAAAAATTCCATCGTTGGTTGATCTATGCGTTAACACAGCTATAGATAATCTGAGGTTTCTTGGGGATGTTGGCGAAACTGATGTGCATCTTCTAGAGCGGATTTTGCCACATTGCACTGTTGAACAGTTGATGCATGTGGAGAAAAGTTCAGAAGACAGAGATCTGACTCCAGTAACTGATAAATTGTGGAAAAAATTCTATGAAAGACAGTTTGGTAGGGAAAATACCAATACTGTAATTGAGAGGATGAAGCAGAAACGAGTGGCATTTAGATGGATTCAATTATATGAGGCAAAGATGAAGGACATAGAAAAGAATGAGAGTAAAGCTGCAGATCGAATAAAGCAAAACTATTTGAAGGAAAATGCCCGGAAACAAAGTCGTCAAATACAGATTTGCAGTAAGGTTCCCCCTTCGAGCAATAAGAGAAGTTTTGGAGGAGGATATGGTTACAATGTGGCAAATACTAAGAACAAGCTGCTGAAGAAGGCAAAGATAGAAGTGCTTCAGAGTCAAGAGGTGAAAAATATAAAAGCCTGGCGGAGAAATGCAGTGCAGAAGACTTGCAATATTCCTTCCACAAAGAAGCCAATGTCAAGTGTTCCTTCCACAAAGAAGCCAACGTTTTCCGGAACGGGCTCTGCCTCGACTTCAAAAGGTACTACCTCACATATGGCCAGAAGATGGTAG

Protein sequence

MYQARKIPSLVDLCVNTAIDNLRFLGDVGETDVHLLERILPHCTVEQLMHVEKSSEDRDLTPVTDKLWKKFYERQFGRENTNTVIERMKQKRVAFRWIQLYEAKMKDIEKNESKAADRIKQNYLKENARKQSRQIQICSKVPPSSNKRSFGGGYGYNVANTKNKLLKKAKIEVLQSQEVKNIKAWRRNAVQKTCNIPSTKKPMSSVPSTKKPTFSGTGSASTSKGTTSHMARRW

Homology

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BLAST of Sed0023934 vs. NCBI nr
Match: TYJ98274.1 (transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 387.1 bits (993), Expect = 1.1e-103
Identity = 199/235 (84.68%), Postives = 215/235 (91.49%), Query Frame = 0


Query: 1   MYQARKIPSLVDLCVNTAIDNLRFLGDVGETDVHLLERILPHCTVEQLMHVEKSSEDRDL 60
           MY+ RKIPSLVDLCVN AIDN+RFLGDVGETD+HLLERILPHCTV+QLMHVEKSSE RDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPVTDKLWKKFYERQFGRENTNTVIERMKQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 120
           TPVTDKLWKKFYERQFG+E+T TVIERM+QKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIK 120

Query: 121 QNYLKENARKQSRQIQICSKVPPSSNKRSFGG-GYGYNVANTKNKLLKKAKIEVLQSQEV 180
           Q+YLKENARKQSRQIQICSKVPPSSNKRSFGG GYGYNVANTKNK+LKKAKIEVLQSQE+
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEM 180

Query: 181 KNIKAWRRNAVQKTCNIPSTKKPMSSVPSTKKPTFSGTGSASTSKGTTSHMARRW 235
           KNIKAWRRNAVQK+ +IPSTKKPM          F G  SASTSK T++HMA+RW
Sbjct: 181 KNIKAWRRNAVQKSSDIPSTKKPM----------FPGRESASTSKNTSTHMAKRW 225

[Close]

BLAST of Sed0023934 vs. NCBI nr
Match: KAG6604740.1 (hypothetical protein SDJN03_02057, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 385.6 bits (989), Expect = 3.1e-103
Identity = 197/234 (84.19%), Postives = 211/234 (90.17%), Query Frame = 0


Query: 1   MYQARKIPSLVDLCVNTAIDNLRFLGDVGETDVHLLERILPHCTVEQLMHVEKSSEDRDL 60
           MY  RK+PSLVDLCV  AIDNLRFLGDVGETD+HLLERILPHCTV+QLMHVEKSSE RDL
Sbjct: 33  MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL 92

Query: 61  TPVTDKLWKKFYERQFGRENTNTVIERMKQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 120
           TPVTDKLWKKFYERQFGRENTN V ERM++K+VAFRWIQLYEAKMKDIEKNES+AADRIK
Sbjct: 93  TPVTDKLWKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK 152

Query: 121 QNYLKENARKQSRQIQICSKVPPSSNKRSFGGGYGYNVANTKNKLLKKAKIEVLQSQEVK 180
           Q+YLKENARKQSRQIQICSKVPP+SNKRSFG GYG NV NTKNKLLKK+KIEVLQSQE+K
Sbjct: 153 QSYLKENARKQSRQIQICSKVPPASNKRSFGAGYGSNVTNTKNKLLKKSKIEVLQSQEMK 212

Query: 181 NIKAWRRNAVQKTCNIPSTKKPMSSVPSTKKPTFSGTGSASTSKGTTSHMARRW 235
           NIKAWRRNAVQKTC+IPSTKKPM          FSG  SASTSK TT+HMAR+W
Sbjct: 213 NIKAWRRNAVQKTCDIPSTKKPM----------FSGRDSASTSKSTTTHMARKW 256

[Close]

BLAST of Sed0023934 vs. NCBI nr
Match: XP_022948143.1 (transcription elongation factor B polypeptide 3 isoform X2 [Cucurbita moschata])

HSP 1 Score: 385.6 bits (989), Expect = 3.1e-103
Identity = 197/234 (84.19%), Postives = 211/234 (90.17%), Query Frame = 0


Query: 1   MYQARKIPSLVDLCVNTAIDNLRFLGDVGETDVHLLERILPHCTVEQLMHVEKSSEDRDL 60
           MY  RK+PSLVDLCV  AIDNLRFLGDVGETD+HLLERILPHCTV+QLMHVEKSSE RDL
Sbjct: 1   MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPVTDKLWKKFYERQFGRENTNTVIERMKQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 120
           TPVTDKLWKKFYERQFGRENTN V ERM++K+VAFRWIQLYEAKMKDIEKNES+AADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK 120

Query: 121 QNYLKENARKQSRQIQICSKVPPSSNKRSFGGGYGYNVANTKNKLLKKAKIEVLQSQEVK 180
           Q+YLKENARKQSRQIQICSKVPP+SNKRSFG GYG NV NTKNKLLKK+KIEVLQSQE+K
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPASNKRSFGAGYGSNVTNTKNKLLKKSKIEVLQSQEMK 180

Query: 181 NIKAWRRNAVQKTCNIPSTKKPMSSVPSTKKPTFSGTGSASTSKGTTSHMARRW 235
           NIKAWRRNAVQKTC+IPSTKKPM          FSG  SASTSK TT+HMAR+W
Sbjct: 181 NIKAWRRNAVQKTCDIPSTKKPM----------FSGRDSASTSKSTTTHMARKW 224

[Close]

BLAST of Sed0023934 vs. NCBI nr
Match: XP_004143189.1 (transcription elongation factor B polypeptide 3 isoform X1 [Cucumis sativus] >KAE8646931.1 hypothetical protein Csa_021040 [Cucumis sativus])

HSP 1 Score: 385.6 bits (989), Expect = 3.1e-103
Identity = 199/235 (84.68%), Postives = 215/235 (91.49%), Query Frame = 0


Query: 1   MYQARKIPSLVDLCVNTAIDNLRFLGDVGETDVHLLERILPHCTVEQLMHVEKSSEDRDL 60
           MY+ RKIPSLVDLCVN AIDNLRFLGDVGETD+HLL+RILPHCTV+QLMHVEKSSE RDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPVTDKLWKKFYERQFGRENTNTVIERMKQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 120
           TPVTDKLWKKFYERQFG+E+T TVIERM+QKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMEDIEKNESKAADRIK 120

Query: 121 QNYLKENARKQSRQIQICSKVPPSSNKRSFGG-GYGYNVANTKNKLLKKAKIEVLQSQEV 180
           Q+YLKENARKQSRQIQICSKVPPSSNKRSFGG GYGYNVANTKNK+LKKAKIEVLQSQE+
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEM 180

Query: 181 KNIKAWRRNAVQKTCNIPSTKKPMSSVPSTKKPTFSGTGSASTSKGTTSHMARRW 235
           KNIKAWRRNAVQK+ +I STKKPM          FSG  SASTSK T++HMA+RW
Sbjct: 181 KNIKAWRRNAVQKSSDISSTKKPM----------FSGRESASTSKNTSTHMAKRW 225

[Close]

BLAST of Sed0023934 vs. NCBI nr
Match: XP_022970778.1 (transcription elongation factor B polypeptide 3 isoform X2 [Cucurbita maxima])

HSP 1 Score: 383.6 bits (984), Expect = 1.2e-102
Identity = 196/234 (83.76%), Postives = 211/234 (90.17%), Query Frame = 0


Query: 1   MYQARKIPSLVDLCVNTAIDNLRFLGDVGETDVHLLERILPHCTVEQLMHVEKSSEDRDL 60
           MY  RK+PSLVDLCV  AIDNLRFLGDVGETD+HLLERILPHCTV+QLMHVEKSSE RDL
Sbjct: 1   MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPVTDKLWKKFYERQFGRENTNTVIERMKQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 120
           TPVTDKLWKKFYERQFGRE+TN V ERM++K+VAFRWIQLYEAKMKDIEKNES+AADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGRESTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK 120

Query: 121 QNYLKENARKQSRQIQICSKVPPSSNKRSFGGGYGYNVANTKNKLLKKAKIEVLQSQEVK 180
           Q+YLKENARKQSRQIQICSKVPP+SNKRSFG GYG NV NTKNKLLKK+KIEVLQSQE+K
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPASNKRSFGAGYGSNVTNTKNKLLKKSKIEVLQSQEMK 180

Query: 181 NIKAWRRNAVQKTCNIPSTKKPMSSVPSTKKPTFSGTGSASTSKGTTSHMARRW 235
           NIKAWRRNAVQKTC+IPSTKKPM          FSG  SASTSK TT+HMAR+W
Sbjct: 181 NIKAWRRNAVQKTCDIPSTKKPM----------FSGRDSASTSKSTTTHMARKW 224

[Close]

BLAST of Sed0023934 vs. ExPASy TrEMBL
Match: A0A5D3BGR1 (Transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold203G00180 PE=4 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 5.2e-104
Identity = 199/235 (84.68%), Postives = 215/235 (91.49%), Query Frame = 0


Query: 1   MYQARKIPSLVDLCVNTAIDNLRFLGDVGETDVHLLERILPHCTVEQLMHVEKSSEDRDL 60
           MY+ RKIPSLVDLCVN AIDN+RFLGDVGETD+HLLERILPHCTV+QLMHVEKSSE RDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPVTDKLWKKFYERQFGRENTNTVIERMKQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 120
           TPVTDKLWKKFYERQFG+E+T TVIERM+QKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIK 120

Query: 121 QNYLKENARKQSRQIQICSKVPPSSNKRSFGG-GYGYNVANTKNKLLKKAKIEVLQSQEV 180
           Q+YLKENARKQSRQIQICSKVPPSSNKRSFGG GYGYNVANTKNK+LKKAKIEVLQSQE+
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEM 180

Query: 181 KNIKAWRRNAVQKTCNIPSTKKPMSSVPSTKKPTFSGTGSASTSKGTTSHMARRW 235
           KNIKAWRRNAVQK+ +IPSTKKPM          F G  SASTSK T++HMA+RW
Sbjct: 181 KNIKAWRRNAVQKSSDIPSTKKPM----------FPGRESASTSKNTSTHMAKRW 225

[Close]

BLAST of Sed0023934 vs. ExPASy TrEMBL
Match: A0A6J1G8K1 (transcription elongation factor B polypeptide 3 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111451808 PE=4 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 1.5e-103
Identity = 197/234 (84.19%), Postives = 211/234 (90.17%), Query Frame = 0


Query: 1   MYQARKIPSLVDLCVNTAIDNLRFLGDVGETDVHLLERILPHCTVEQLMHVEKSSEDRDL 60
           MY  RK+PSLVDLCV  AIDNLRFLGDVGETD+HLLERILPHCTV+QLMHVEKSSE RDL
Sbjct: 1   MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPVTDKLWKKFYERQFGRENTNTVIERMKQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 120
           TPVTDKLWKKFYERQFGRENTN V ERM++K+VAFRWIQLYEAKMKDIEKNES+AADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK 120

Query: 121 QNYLKENARKQSRQIQICSKVPPSSNKRSFGGGYGYNVANTKNKLLKKAKIEVLQSQEVK 180
           Q+YLKENARKQSRQIQICSKVPP+SNKRSFG GYG NV NTKNKLLKK+KIEVLQSQE+K
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPASNKRSFGAGYGSNVTNTKNKLLKKSKIEVLQSQEMK 180

Query: 181 NIKAWRRNAVQKTCNIPSTKKPMSSVPSTKKPTFSGTGSASTSKGTTSHMARRW 235
           NIKAWRRNAVQKTC+IPSTKKPM          FSG  SASTSK TT+HMAR+W
Sbjct: 181 NIKAWRRNAVQKTCDIPSTKKPM----------FSGRDSASTSKSTTTHMARKW 224

[Close]

BLAST of Sed0023934 vs. ExPASy TrEMBL
Match: A0A6J1I4W9 (transcription elongation factor B polypeptide 3 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469662 PE=4 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 5.7e-103
Identity = 196/234 (83.76%), Postives = 211/234 (90.17%), Query Frame = 0


Query: 1   MYQARKIPSLVDLCVNTAIDNLRFLGDVGETDVHLLERILPHCTVEQLMHVEKSSEDRDL 60
           MY  RK+PSLVDLCV  AIDNLRFLGDVGETD+HLLERILPHCTV+QLMHVEKSSE RDL
Sbjct: 1   MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPVTDKLWKKFYERQFGRENTNTVIERMKQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 120
           TPVTDKLWKKFYERQFGRE+TN V ERM++K+VAFRWIQLYEAKMKDIEKNES+AADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGRESTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK 120

Query: 121 QNYLKENARKQSRQIQICSKVPPSSNKRSFGGGYGYNVANTKNKLLKKAKIEVLQSQEVK 180
           Q+YLKENARKQSRQIQICSKVPP+SNKRSFG GYG NV NTKNKLLKK+KIEVLQSQE+K
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPASNKRSFGAGYGSNVTNTKNKLLKKSKIEVLQSQEMK 180

Query: 181 NIKAWRRNAVQKTCNIPSTKKPMSSVPSTKKPTFSGTGSASTSKGTTSHMARRW 235
           NIKAWRRNAVQKTC+IPSTKKPM          FSG  SASTSK TT+HMAR+W
Sbjct: 181 NIKAWRRNAVQKTCDIPSTKKPM----------FSGRDSASTSKSTTTHMARKW 224

[Close]

BLAST of Sed0023934 vs. ExPASy TrEMBL
Match: A0A1S4E1U0 (transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496337 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 9.8e-103
Identity = 198/234 (84.62%), Postives = 214/234 (91.45%), Query Frame = 0


Query: 1   MYQARKIPSLVDLCVNTAIDNLRFLGDVGETDVHLLERILPHCTVEQLMHVEKSSEDRDL 60
           MY+ RKIPSLVDLCVN AIDN+RFLGDVGETD+HLLERILPHCTV+QLMHVEKSSE RDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPVTDKLWKKFYERQFGRENTNTVIERMKQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 120
           TPVTDKLWKKFYERQFG+E+T TVIERM+QKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIK 120

Query: 121 QNYLKENARKQSRQIQICSKVPPSSNKRSFGG-GYGYNVANTKNKLLKKAKIEVLQSQEV 180
           Q+YLKENARKQSRQIQICSKVPPSSNKRSFGG GYGYNVANTKNK+LKKAKIEVLQSQE+
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEM 180

Query: 181 KNIKAWRRNAVQKTCNIPSTKKPMSSVPSTKKPTFSGTGSASTSKGTTSHMARR 234
           KNIKAWRRNAVQK+ +IPSTKKPM          F G  SASTSK T++HMA+R
Sbjct: 181 KNIKAWRRNAVQKSSDIPSTKKPM----------FPGRESASTSKNTSTHMAKR 224

[Close]

BLAST of Sed0023934 vs. ExPASy TrEMBL
Match: A0A1S3C4D6 (transcription elongation factor B polypeptide 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496337 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 9.8e-103
Identity = 198/234 (84.62%), Postives = 214/234 (91.45%), Query Frame = 0


Query: 1   MYQARKIPSLVDLCVNTAIDNLRFLGDVGETDVHLLERILPHCTVEQLMHVEKSSEDRDL 60
           MY+ RKIPSLVDLCVN AIDN+RFLGDVGETD+HLLERILPHCTV+QLMHVEKSSE RDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPVTDKLWKKFYERQFGRENTNTVIERMKQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 120
           TPVTDKLWKKFYERQFG+E+T TVIERM+QKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIK 120

Query: 121 QNYLKENARKQSRQIQICSKVPPSSNKRSFGG-GYGYNVANTKNKLLKKAKIEVLQSQEV 180
           Q+YLKENARKQSRQIQICSKVPPSSNKRSFGG GYGYNVANTKNK+LKKAKIEVLQSQE+
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEM 180

Query: 181 KNIKAWRRNAVQKTCNIPSTKKPMSSVPSTKKPTFSGTGSASTSKGTTSHMARR 234
           KNIKAWRRNAVQK+ +IPSTKKPM          F G  SASTSK T++HMA+R
Sbjct: 181 KNIKAWRRNAVQKSSDIPSTKKPM----------FPGRESASTSKNTSTHMAKR 224

[Close]

BLAST of Sed0023934 vs. TAIR 10
Match: AT2G42780.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). )

HSP 1 Score: 192.6 bits (488), Expect = 3.6e-49
Identity = 105/228 (46.05%), Postives = 154/228 (67.54%), Query Frame = 0


Query: 5   RKIPSLVDLCVNTAIDNLRFLGDVGETDVHLLERILPHCTVEQLMHVEKSSEDRDLTPVT 64
           +K PSLVDLCV  AIDN++++G VG  D  LLE+IL HCT+EQL H+E +++D DL+P+T
Sbjct: 8   KKPPSLVDLCVRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDDTDLSPIT 67

Query: 65  DKLWKKFYERQFGRENTNTVIERMKQKRV-AFRWIQLYEAKMKDIEKNESKAADRIKQNY 124
           DK WK FY++ +G E+   +IE ++  +V  F+W  LYE K+  +++ E +   R+K+ Y
Sbjct: 68  DKFWKGFYKKHYGEEDMKDLIEDLEWNKVNDFKWRNLYELKVIAVQQKEKELGGRLKERY 127

Query: 125 LKENARKQSRQIQICSKVPPSSNKRSFGG--GYGYNVANTKNKLLKKAKIEVLQSQEVKN 184
             EN RKQSRQ ++CSK PPS  KR F G    GYN+ + K+ ++KKAKI++L+SQEVKN
Sbjct: 128 KDENERKQSRQTKVCSKAPPS--KRPFWGNSASGYNLGHVKSNIMKKAKIDLLKSQEVKN 187

Query: 185 IKAWRRNAVQKTCNIPSTKKP--MSSVPSTKKP-TFSGTGSASTSKGT 227
           + A +RN +QK+ +I + KK    ++ PST +   + G     T K T
Sbjct: 188 LTAIKRNTIQKSFSISTPKKTGLSANSPSTSRSIPYGGRNLTETKKNT 233

[Close]

BLAST of Sed0023934 vs. TAIR 10
Match: AT2G42780.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684). )

HSP 1 Score: 191.8 bits (486), Expect = 6.1e-49
Identity = 107/243 (44.03%), Postives = 159/243 (65.43%), Query Frame = 0


Query: 5   RKIPSLVDLCVNTAIDNLRFLGDVGETDVHLLERILPHCTVEQLMHVEKSSEDRDLTPVT 64
           +K PSLVDLCV  AIDN++++G VG  D  LLE+IL HCT+EQL H+E +++D DL+P+T
Sbjct: 8   KKPPSLVDLCVRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDDTDLSPIT 67

Query: 65  DKLWKKFYERQFGRENTNTVIERMKQKRV-AFRWIQLYEAKMKDIEKNESKAADRIKQNY 124
           DK WK FY++ +G E+   +IE ++  +V  F+W  LYE K+  +++ E +   R+K+ Y
Sbjct: 68  DKFWKGFYKKHYGEEDMKDLIEDLEWNKVNDFKWRNLYELKVIAVQQKEKELGGRLKERY 127

Query: 125 LKENARKQSRQIQICSKVPPSSNKRSFGG--GYGYNVANTKNKLLKKAKIEVLQSQEVKN 184
             EN RKQSRQ ++CSK PPS  KR F G    GYN+ + K+ ++KKAKI++L+SQEVKN
Sbjct: 128 KDENERKQSRQTKVCSKAPPS--KRPFWGNSASGYNLGHVKSNIMKKAKIDLLKSQEVKN 187

Query: 185 IKAWRRNAVQKTCNIPSTKKP--MSSVPSTKKPTFSG---------TGSASTSKGTTSHM 234
           + A +RN +QK+ +I + K+    ++ PST +   SG          G   T+  T+ + 
Sbjct: 188 LTAIKRNTIQKSFSISAPKRTGLSANAPSTSRSVPSGGQKLPPRRINGLPGTAPSTSKNA 247

The following BLAST results are available for this feature:

BLAST of Sed0023934 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ98274.1	1.1e-103	84.68	transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo var. ma...	[more]
KAG6604740.1	3.1e-103	84.19	hypothetical protein SDJN03_02057, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022948143.1	3.1e-103	84.19	transcription elongation factor B polypeptide 3 isoform X2 [Cucurbita moschata]	[more]
XP_004143189.1	3.1e-103	84.68	transcription elongation factor B polypeptide 3 isoform X1 [Cucumis sativus] >KA...	[more]
XP_022970778.1	1.2e-102	83.76	transcription elongation factor B polypeptide 3 isoform X2 [Cucurbita maxima]	[more]

BLAST of Sed0023934 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0023934 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BGR1	5.2e-104	84.68	Transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo var. ...	[more]
A0A6J1G8K1	1.5e-103	84.19	transcription elongation factor B polypeptide 3 isoform X2 OS=Cucurbita moschata...	[more]
A0A6J1I4W9	5.7e-103	83.76	transcription elongation factor B polypeptide 3 isoform X2 OS=Cucurbita maxima O...	[more]
A0A1S4E1U0	9.8e-103	84.62	transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo OX=36...	[more]
A0A1S3C4D6	9.8e-103	84.62	transcription elongation factor B polypeptide 3 isoform X1 OS=Cucumis melo OX=36...	[more]

BLAST of Sed0023934 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42780.1	3.6e-49	46.05	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcripti...	[more]
AT2G42780.2	6.1e-49	44.03	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcripti...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 98..118
None	No IPR available	GENE3D	6.10.250.3180		coord: 21..127 e-value: 1.2E-21 score: 78.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 196..234
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 196..228
None	No IPR available	PANTHER	PTHR47543	OS08G0169600 PROTEIN	coord: 3..224
IPR010684	RNA polymerase II transcription factor SIII, subunit A	PFAM	PF06881	Elongin_A	coord: 26..135 e-value: 1.9E-26 score: 92.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0023934.1	Sed0023934.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006368	transcription elongation from RNA polymerase II promoter
biological_process	GO:0006414	translational elongation
cellular_component	GO:0070449	elongin complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003746	translation elongation factor activity