Sed0023701 (gene) Chayote v1

Overview
NameSed0023701
Typegene
OrganismSechium edule (Chayote v1)
DescriptionReverse transcriptase domain-containing protein
LocationLG04: 3606107 .. 3608512 (-)
RNA-Seq ExpressionSed0023701
SyntenySed0023701
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGTTCTTGAAGGTTGGTTGCAGAATGGACATGGCGGCCAAAATTCTTCGCAGTGTAACGAACGCAACGAACAACAACACCGTCATCAACGTCTGTTTGGTCCTTTCCTTTGGGGCACTGAGCGTAAGATCCATCAACCAGCAGACACAAATCGACGCTCTGGAGGCCGACAAAGATTCGCTTCTCCGTTCCAACAAAGCCTTGAAGAAAACCATGTGGGATTGGAAGCAACGCCTTTTCGCCGAAGCTTCGTCGGAATCGCCTTTAGTCCCCCTCTCCAGGATCAAAGCCATCTACGGCGAAGCTCCCATTTCCCCTTCCGGTATTTTACGCTTTTCTCTTCTCTGATCTTACAAAATTAAGTGGTTTGCAGGCCCCTTTTCGAATTATTAGCTATCAATTCTGATCCATTTTGACTCGTTTTAGAAACTGGGTGTCATCCTCGAGATTTTCTTCTTCTTTTTCTTTTTTTTGAAACCGGGAAATCGAAGCATCAAAGGAATGAAGTAGTGTCTACAAATTAATGTATAAATGTCTTAGGTGAGTCTCAAACTTGGGACTTTGAGGGGAGCACACTCCACACCTTCAAAGTCCAAGTGGTCTCGGATCAAGAATTATGGTTCATTTCAAGCCCCCTTTGTGTAATTTGAAAACTTTTTGGGTGTGTTTGGAGCACCGGTTTGGTTATAATAGACGAAAGGTTATGATAAATGGTGTTTGAGATGTAAGTTATTATAAGCTAGTTATCTAAAAAAAAGCAATGTATGTAAGGTTTAGATAAACGGGCACGTAGATTTAGATAAACGGGTACGCAGGTTAGATAACCACTGTTTATAATGAACGGTGGGGAAAAGAAGTAAAACATTTTGTGTCGAAAGAGAATGGTTTCCATCCACCATGAATTGCATGAAGTGTTTGAGAATTGAAGGTTCTTCCATTGGATGCTGAAATTAATGACTGTACCATCAAAATGATTTGAAATTTGAAATTTACTTTACTTTCATGGGCTGCTATTTTCTTTGTAATGTACGTTTAAAATCTCGCCCATTGAATTCTATAATGAGAGACTGTGTCATTGAACTTATGTTTGTTCAACGGTTTCCTGCTTATTAAGTTCATGTTTCTAGCAAGGATTTAATGCAGTGTCGTCTCTAAGGGGTGGCACAGTAGTTGAAGATTTGGGCTTTGAGGGTATGTTCCCCTCAAGGTCTCAGATTCGAGACTCACCTGTGAAAACTCATTCGATGTCTCCGGTACCTGGTTTAGAGATGTGCGTGGTTACCTTTGTTTAAAAAAAAAGGATTTAATGTAGTATCTCAATTGAGAAGGTTTGGGTGTGGTGTGGTTAAATTCAATGTCTATCTTTAGACTTCATTGCTACTTTAGTACTAGGCCTTTTTGTAATTATGGTCTTCCTCTTGTTATTTTAGATTGGAGTTATTTTGTAGTTTGTTTTGAATTCCTTTTGTTAGGGCCTGTTTTTTTGTATGCTGTATTCTTTTTTTTCTTTTTTTTTTTTATAGGAAACAAAATTTTCATTTATGAATGAAAAACGAACCATTAGTTCCTATCGAAACTAGCGATAAAAACTAAAAGCATCTTCACTTAGCCTTAAAAAGAGATTGTTATCGCAAAAAGGGTGTAGACGGTGATACCAAAAAAAAAGGAGGAGAAAGGTGACACCAAAAACTTTGGTTTCTTACCTAAAAAAAAACACTCTCTTATGCATATTACTTAGTTGAGATGTTTAAGATAGGAATCAAATCTTTAGAATCACTCCATCCCCAAATGTTAGCTGAACTATAAAAAAACATAAGAATCAAATTTCATCTCTGTTTTTATAAATCAAGTCAAATATATGTCTCCAAGGGGTGGTATAATGGTTGAAGATTTGGACTTTGAAAGTATGTTCTCTTCAAGGTCTCAGGTTCGAATCTCACTTGTGACATTATTTCTTAGATGTCTCCGGTCCCTAGCCTAAGGATAGGTGTAATTACCTTGTTTCAAAAAATAAAAAAGCAAGTCAAATATATGCATGTGAAAGCTCCTTTTTTCTAGTCAACTTGTTAAGATTTGAGAAGGCCACTATTGTATTAGCTAGCTTTTACAGATTCTTTATCCATTTTTTATTTACCATGCAGGAGCTGGAAATGCGACAACCGAGGATTCAAATTCACAAGGCTCCAAACTTATGGTTTAATGTTAGTTTCCTCTTGTTTCTGTTTCCTTCAATCTGGAAATTGATGATGAGTTAAAAATTCATTTAAGTTGCATAATTGTTTGTTTTGAGGCCCAGAAAAGTAATGAAGAGTACAAGGAATTAGACTTTTATTTTTCATTTGACATTAGTCCCTTGAGAATTAAACATCCAATTGAAAATATTATCAAAATTGAAAAATGCAGCAG

mRNA sequence

GGGTTCTTGAAGGTTGGTTGCAGAATGGACATGGCGGCCAAAATTCTTCGCAGTGTAACGAACGCAACGAACAACAACACCGTCATCAACGTCTGTTTGGTCCTTTCCTTTGGGGCACTGAGCGTAAGATCCATCAACCAGCAGACACAAATCGACGCTCTGGAGGCCGACAAAGATTCGCTTCTCCGTTCCAACAAAGCCTTGAAGAAAACCATGTGGGATTGGAAGCAACGCCTTTTCGCCGAAGCTTCGTCGGAATCGCCTTTAGTCCCCCTCTCCAGGATCAAAGCCATCTACGGCGAAGCTCCCATTTCCCCTTCCGGAGCTGGAAATGCGACAACCGAGGATTCAAATTCACAAGGCTCCAAACTTATGGTTTAATGTTAGTTTCCTCTTGTTTCTGTTTCCTTCAATCTGGAAATTGATGATGAGTTAAAAATTCATTTAAGTTGCATAATTGTTTGTTTTGAGGCCCAGAAAAGTAATGAAGAGTACAAGGAATTAGACTTTTATTTTTCATTTGACATTAGTCCCTTGAGAATTAAACATCCAATTGAAAATATTATCAAAATTGAAAAATGCAGCAG

Coding sequence (CDS)

ATGGACATGGCGGCCAAAATTCTTCGCAGTGTAACGAACGCAACGAACAACAACACCGTCATCAACGTCTGTTTGGTCCTTTCCTTTGGGGCACTGAGCGTAAGATCCATCAACCAGCAGACACAAATCGACGCTCTGGAGGCCGACAAAGATTCGCTTCTCCGTTCCAACAAAGCCTTGAAGAAAACCATGTGGGATTGGAAGCAACGCCTTTTCGCCGAAGCTTCGTCGGAATCGCCTTTAGTCCCCCTCTCCAGGATCAAAGCCATCTACGGCGAAGCTCCCATTTCCCCTTCCGGAGCTGGAAATGCGACAACCGAGGATTCAAATTCACAAGGCTCCAAACTTATGGTTTAA

Protein sequence

MDMAAKILRSVTNATNNNTVINVCLVLSFGALSVRSINQQTQIDALEADKDSLLRSNKALKKTMWDWKQRLFAEASSESPLVPLSRIKAIYGEAPISPSGAGNATTEDSNSQGSKLMV
Homology
BLAST of Sed0023701 vs. NCBI nr
Match: XP_038897052.1 (uncharacterized protein LOC120085226 [Benincasa hispida])

HSP 1 Score: 186.0 bits (471), Expect = 1.8e-43
Identity = 95/118 (80.51%), Postives = 108/118 (91.53%), Query Frame = 0

Query: 1   MDMAAKILRSVTNATNNNTVINVCLVLSFGALSVRSINQQTQIDALEADKDSLLRSNKAL 60
           MD+A+K LR+VTNATNNNT+INVCLVLSFGALS RSI QQ +I+ALEA+K SLL SNKAL
Sbjct: 1   MDLASKFLRTVTNATNNNTLINVCLVLSFGALSARSIKQQREIEALEAEKVSLLNSNKAL 60

Query: 61  KKTMWDWKQRLFAEASSESPLVPLSRIKAIYGEAPISPSGAGNATTEDSNSQGSKLMV 119
           KKTMWDWKQ+LFAEAS++S LVPL+RIKAIYGEAPISPSG G+  TED+NSQGSKLMV
Sbjct: 61  KKTMWDWKQQLFAEASTDSALVPLARIKAIYGEAPISPSGVGHVATEDANSQGSKLMV 118

BLAST of Sed0023701 vs. NCBI nr
Match: XP_022976887.1 (uncharacterized protein LOC111477117 [Cucurbita maxima])

HSP 1 Score: 179.1 bits (453), Expect = 2.2e-41
Identity = 89/118 (75.42%), Postives = 107/118 (90.68%), Query Frame = 0

Query: 1   MDMAAKILRSVTNATNNNTVINVCLVLSFGALSVRSINQQTQIDALEADKDSLLRSNKAL 60
           MD+A+K LR++TNATNNNT+INVCLV+SFGALS RSI QQ +I+ALEA+KDSLL SNKAL
Sbjct: 1   MDLASKFLRTLTNATNNNTLINVCLVISFGALSARSIKQQREIEALEAEKDSLLNSNKAL 60

Query: 61  KKTMWDWKQRLFAEASSESPLVPLSRIKAIYGEAPISPSGAGNATTEDSNSQGSKLMV 119
           KKTMWDWKQ+L++EAS++S L+PL+RIKAIY EAP+SPSGA  A T D+NSQGSKLMV
Sbjct: 61  KKTMWDWKQQLYSEASTDSALIPLARIKAIYSEAPVSPSGAEQAATGDANSQGSKLMV 118

BLAST of Sed0023701 vs. NCBI nr
Match: XP_022937146.1 (uncharacterized protein LOC111443531 [Cucurbita moschata] >XP_023536544.1 uncharacterized protein LOC111797682 [Cucurbita pepo subsp. pepo] >KAG7024766.1 hypothetical protein SDJN02_13584 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 178.3 bits (451), Expect = 3.8e-41
Identity = 89/118 (75.42%), Postives = 107/118 (90.68%), Query Frame = 0

Query: 1   MDMAAKILRSVTNATNNNTVINVCLVLSFGALSVRSINQQTQIDALEADKDSLLRSNKAL 60
           MD+A K LR+VT+ATNNNT+INVCLV+SFGALS RSI QQ +I+ALEA+KDSLL SNK+L
Sbjct: 1   MDLATKFLRTVTSATNNNTLINVCLVISFGALSARSIKQQREIEALEAEKDSLLNSNKSL 60

Query: 61  KKTMWDWKQRLFAEASSESPLVPLSRIKAIYGEAPISPSGAGNATTEDSNSQGSKLMV 119
           KKTMWDWKQ+L+++AS++S LVPL+RIKAIYGEAP+SPSGA  A T D+NSQGSKLMV
Sbjct: 61  KKTMWDWKQQLYSDASTDSALVPLARIKAIYGEAPVSPSGAEQAATGDANSQGSKLMV 118

BLAST of Sed0023701 vs. NCBI nr
Match: XP_022140674.1 (uncharacterized protein LOC111011272 [Momordica charantia])

HSP 1 Score: 177.2 bits (448), Expect = 8.5e-41
Identity = 92/119 (77.31%), Postives = 106/119 (89.08%), Query Frame = 0

Query: 1   MDMAAKILRSVTNATNNNTVINVCLVLSFGALSVRSINQQTQIDALEADKDSLLRSNKAL 60
           MDMA K LR++TNA+NN T+INVCLV+SFGALS RSI QQ +I+ALEA+KDSLL SNKAL
Sbjct: 1   MDMATKFLRTLTNASNNKTLINVCLVVSFGALSARSIKQQREIEALEAEKDSLLNSNKAL 60

Query: 61  KKTMWDWKQRLFAEASSESPLVPLSRIKAIYGEAPI-SPSGAGNATTEDSNSQGSKLMV 119
           KK+MWDWKQ+LFAEASSES LVPL+RIKAIYGE PI SP+GAG+A TED NSQGSK +V
Sbjct: 61  KKSMWDWKQQLFAEASSESALVPLARIKAIYGEVPISSPTGAGHAATEDENSQGSKFVV 119

BLAST of Sed0023701 vs. NCBI nr
Match: KAG6591893.1 (Acetyltransferase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 176.4 bits (446), Expect = 1.4e-40
Identity = 88/117 (75.21%), Postives = 106/117 (90.60%), Query Frame = 0

Query: 1   MDMAAKILRSVTNATNNNTVINVCLVLSFGALSVRSINQQTQIDALEADKDSLLRSNKAL 60
           MD+A K LR+VT+ATNNNT+INVCLV+SFGALS RSI QQ +I+ALEA+KDSLL SNK+L
Sbjct: 113 MDLATKFLRTVTSATNNNTLINVCLVISFGALSARSIKQQREIEALEAEKDSLLNSNKSL 172

Query: 61  KKTMWDWKQRLFAEASSESPLVPLSRIKAIYGEAPISPSGAGNATTEDSNSQGSKLM 118
           KKTMWDWKQ+L+++AS++S LVPL+RIKAIYGEAP+SPSGA  A T D+NSQGSKLM
Sbjct: 173 KKTMWDWKQQLYSDASTDSALVPLARIKAIYGEAPVSPSGAEQAATGDANSQGSKLM 229

BLAST of Sed0023701 vs. ExPASy TrEMBL
Match: A0A6J1IGY3 (uncharacterized protein LOC111477117 OS=Cucurbita maxima OX=3661 GN=LOC111477117 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.1e-41
Identity = 89/118 (75.42%), Postives = 107/118 (90.68%), Query Frame = 0

Query: 1   MDMAAKILRSVTNATNNNTVINVCLVLSFGALSVRSINQQTQIDALEADKDSLLRSNKAL 60
           MD+A+K LR++TNATNNNT+INVCLV+SFGALS RSI QQ +I+ALEA+KDSLL SNKAL
Sbjct: 1   MDLASKFLRTLTNATNNNTLINVCLVISFGALSARSIKQQREIEALEAEKDSLLNSNKAL 60

Query: 61  KKTMWDWKQRLFAEASSESPLVPLSRIKAIYGEAPISPSGAGNATTEDSNSQGSKLMV 119
           KKTMWDWKQ+L++EAS++S L+PL+RIKAIY EAP+SPSGA  A T D+NSQGSKLMV
Sbjct: 61  KKTMWDWKQQLYSEASTDSALIPLARIKAIYSEAPVSPSGAEQAATGDANSQGSKLMV 118

BLAST of Sed0023701 vs. ExPASy TrEMBL
Match: A0A6J1F9J6 (uncharacterized protein LOC111443531 OS=Cucurbita moschata OX=3662 GN=LOC111443531 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.8e-41
Identity = 89/118 (75.42%), Postives = 107/118 (90.68%), Query Frame = 0

Query: 1   MDMAAKILRSVTNATNNNTVINVCLVLSFGALSVRSINQQTQIDALEADKDSLLRSNKAL 60
           MD+A K LR+VT+ATNNNT+INVCLV+SFGALS RSI QQ +I+ALEA+KDSLL SNK+L
Sbjct: 1   MDLATKFLRTVTSATNNNTLINVCLVISFGALSARSIKQQREIEALEAEKDSLLNSNKSL 60

Query: 61  KKTMWDWKQRLFAEASSESPLVPLSRIKAIYGEAPISPSGAGNATTEDSNSQGSKLMV 119
           KKTMWDWKQ+L+++AS++S LVPL+RIKAIYGEAP+SPSGA  A T D+NSQGSKLMV
Sbjct: 61  KKTMWDWKQQLYSDASTDSALVPLARIKAIYGEAPVSPSGAEQAATGDANSQGSKLMV 118

BLAST of Sed0023701 vs. ExPASy TrEMBL
Match: A0A6J1CGB8 (uncharacterized protein LOC111011272 OS=Momordica charantia OX=3673 GN=LOC111011272 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 4.1e-41
Identity = 92/119 (77.31%), Postives = 106/119 (89.08%), Query Frame = 0

Query: 1   MDMAAKILRSVTNATNNNTVINVCLVLSFGALSVRSINQQTQIDALEADKDSLLRSNKAL 60
           MDMA K LR++TNA+NN T+INVCLV+SFGALS RSI QQ +I+ALEA+KDSLL SNKAL
Sbjct: 1   MDMATKFLRTLTNASNNKTLINVCLVVSFGALSARSIKQQREIEALEAEKDSLLNSNKAL 60

Query: 61  KKTMWDWKQRLFAEASSESPLVPLSRIKAIYGEAPI-SPSGAGNATTEDSNSQGSKLMV 119
           KK+MWDWKQ+LFAEASSES LVPL+RIKAIYGE PI SP+GAG+A TED NSQGSK +V
Sbjct: 61  KKSMWDWKQQLFAEASSESALVPLARIKAIYGEVPISSPTGAGHAATEDENSQGSKFVV 119

BLAST of Sed0023701 vs. ExPASy TrEMBL
Match: A0A1S3B9R7 (uncharacterized protein LOC103487583 OS=Cucumis melo OX=3656 GN=LOC103487583 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.5e-38
Identity = 87/118 (73.73%), Postives = 102/118 (86.44%), Query Frame = 0

Query: 1   MDMAAKILRSVTNATNNNTVINVCLVLSFGALSVRSINQQTQIDALEADKDSLLRSNKAL 60
           MD+A+K LR ++N  N NT+INVCLV SF ALS RSI Q+ QI+ALEA+K+SLL SNKAL
Sbjct: 1   MDLASKFLRILSNDNNKNTLINVCLVFSFAALSARSIKQERQIEALEAEKNSLLDSNKAL 60

Query: 61  KKTMWDWKQRLFAEASSESPLVPLSRIKAIYGEAPISPSGAGNATTEDSNSQGSKLMV 119
           KKTMWDWKQ+LFAEAS++S LVPL+RIKAIYGEAPISPSGA NA TED+ S+ SKLMV
Sbjct: 61  KKTMWDWKQQLFAEASTQSALVPLARIKAIYGEAPISPSGAVNAATEDATSRSSKLMV 118

BLAST of Sed0023701 vs. ExPASy TrEMBL
Match: A0A0A0L380 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G364020 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 6.3e-34
Identity = 78/100 (78.00%), Postives = 89/100 (89.00%), Query Frame = 0

Query: 1   MDMAAKILRSVTNATNNNTVINVCLVLSFGALSVRSINQQTQIDALEADKDSLLRSNKAL 60
           MD A+K LRS+ NATN NTVINVCLV+SF AL+ RSI Q+ QI+ALE +K+SLL SNKAL
Sbjct: 1   MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKAL 60

Query: 61  KKTMWDWKQRLFAEASSESPLVPLSRIKAIYGEAPISPSG 101
           KKTMWDWKQ+LFAEAS+ES LVPL+RIKAIYGEAPISPSG
Sbjct: 61  KKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSG 100

BLAST of Sed0023701 vs. TAIR 10
Match: AT1G48200.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 106.7 bits (265), Expect = 1.3e-23
Identity = 58/118 (49.15%), Postives = 79/118 (66.95%), Query Frame = 0

Query: 3   MAAKILRSVTNATNNNTVINVCLVLSFGALSVRSINQQTQIDALEADKDSLLRSNKALKK 62
           MA KI   ++ A NNN VIN CL +SF  L +RS  QQ  ++AL   K+SL +SNKA+K 
Sbjct: 1   MANKIAMFLSEAMNNNAVINTCLGVSFVVLGLRSDKQQKYVEALAEQKESLFKSNKAMKL 60

Query: 63  TMWDWKQRLFAEASS--ESPLVPLSRIKAIYGEAPISPSGAGNATTEDSNSQGSKLMV 119
           TMW+WKQ+LFAEA+S   + +VPLS +KAIYGE   + + +G+   EDS     K+M+
Sbjct: 61  TMWEWKQQLFAEAASAGNAAVVPLSTLKAIYGEVTTTTNQSGDTAKEDSKVSTPKIMI 118

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038897052.11.8e-4380.51uncharacterized protein LOC120085226 [Benincasa hispida][more]
XP_022976887.12.2e-4175.42uncharacterized protein LOC111477117 [Cucurbita maxima][more]
XP_022937146.13.8e-4175.42uncharacterized protein LOC111443531 [Cucurbita moschata] >XP_023536544.1 unchar... [more]
XP_022140674.18.5e-4177.31uncharacterized protein LOC111011272 [Momordica charantia][more]
KAG6591893.11.4e-4075.21Acetyltransferase, partial [Cucurbita argyrosperma subsp. sororia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1IGY31.1e-4175.42uncharacterized protein LOC111477117 OS=Cucurbita maxima OX=3661 GN=LOC111477117... [more]
A0A6J1F9J61.8e-4175.42uncharacterized protein LOC111443531 OS=Cucurbita moschata OX=3662 GN=LOC1114435... [more]
A0A6J1CGB84.1e-4177.31uncharacterized protein LOC111011272 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
A0A1S3B9R72.5e-3873.73uncharacterized protein LOC103487583 OS=Cucumis melo OX=3656 GN=LOC103487583 PE=... [more]
A0A0A0L3806.3e-3478.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G364020 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G48200.11.3e-2349.15unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 43..63
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 99..118
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..118
NoneNo IPR availablePANTHERPTHR38355OS06G0149500 PROTEINcoord: 1..118

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0023701.1Sed0023701.1mRNA