Sed0023402 (gene) Chayote v1

Overview


Name	Sed0023402
Type	gene
Organism	Sechium edule (Chayote v1)
Description	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like
Location	LG12: 33546589 .. 33549154 (-)
RNA-Seq Expression	Sed0023402
Synteny	Sed0023402

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGCCTGTTGAGCCGGATTTTCCCAATTCGTGCTGTATCTCTCGTCGGTTTCGGAGCTACAGTCTTCGCCGGAGTCTTCGCTACAAGAGGCTTCCGCCGGAGCTCCTCTGCCTCTCCGTCTTGAAATTGGACGGTTCCTCCTTCCGTAAATTTTTCCCGCTCTTGTTTCGATTCATATATCTTTGCTTTTGGTTCCAAACTTTGGTTTATTGCACGTAGGGGTGTACGTAAGAACCGATGATCCTGAGCAACCTGCACTACCCAACCCGAACATTGGGTTGGGTTGTGATTTTATAACTTTCGTTAGTTGGGTCGGTTATAGGTTGCAGCCTTTTAGCTCGTTTAACTCAACTCAACTCGAGTTTAGAATAAATATGTGTGAGAGAGATCAATTAATAAGAGAGGTATATACCATATTGATAAGGAATATATATGATTAACTAGGTAGCATAGGTCCAAGTATAATATCATGCACCTTTTCTTTATGAGAAATATTTGTATTGGATCGACTCTTCTCACAAAATAATTATAAATACAGACAAATGTTAAAATATTTACATTCCTAATTATTAATACAATATTATATGAAAGTATGTGAAAATATTCATTAATATCAAAGACTATAGTTGTTAAGTTTTTCTAAAAGGGACCATATTTATTATTATTTTCTAAATTTGACCAGTCTAGTGAACTTCACTTTCTTTATTTGTTTATATATTTATGAGTATTATTTGATTTTTTAAGGAGAAAAGAAAGGATTAACACAACGTTGAGAATCTAACCTAACCCAACTCGAAAAATATAGATTTTGGCTGCTCTAATGCATAGGATAGGTTTGGACAGGTTGGAGAATTTAATCAACTCGAAAATTTAGATTAGTCCAAAAAAATTTCCTAACCCAACCCGAACCATATACACCCATTTGTACAAAACATTTCTGTGAATAACCTGTTTTTGTTAGGGAATGTTTTGAGATTTCTTGTTCTTCCTTTGAACTGGATTGAATCCATTACCATCATTCAGATTTTCAATGTGTTTTTATTTTATTGAATGTTTGGTAATATTATATTTGTGCATATATAGAGGTGCAAGTTGCAAGGACGGCGACGGTGGCAAATCTTAGAGACGCAGTGGAGAGTGTTTTCTGCGAAATGTTGATGAATGAAGAAGATGTCAAGATTTCATGGTACTTTTATGTATATATATATATATGTGATTTTTTGGATCTGGTTATGCTCACGATGGTGACCATCATATATTAAACTCGTTGGTGATATGATTAAATTTTCCTCAACCCATAAATTTTAGCTTGTAGGTTGATTGGCGATTTAGCACGACAATAGCTTTGAAGTTTAAGTTTTTGGGTTGATTGATGATTTAACATGAGTCAATATTGTTAAGAAAACGGCAATTAAAAATCGATAAAACAAAGAATAAAGTTACAGATAACGATAAACGTGAGAGAAGAAGAAGAAAACAACACAGAAGTTTACGTGGTTCACTAACGTAGTGTTAACTAGTCTACGGGTAGAAGAGGAGAACAATTGTATTGAGAGAGACGAAAATTTAAAAATACAGAGATTATGTCATAATACCGCTAGGGTTTGATGAGAGTGCCTAGGGTTTAATTCGAGTTCATATAGACACTCTTATTAAACCCTATTACAGAATACGGTGTTAAAAACAGGATGTTCTGCGAGTGTGGTTAGCAGAGATGCAGAATGCAGGCTGCAACGGAGAATGCGCTTACGCATATAGATGCGGGCCGCAGCGAGACTCTCGACTGCTAATCGCATGACATTACTGCGTTCAAGGTATAACACAACAAATATGTTATCATAGGAGGTCATGAAGTCAACCCTAGCCAAGTTATTTCATTTGTAGGACATTACAGGAGAAGTGTTGATTGATATAATTAAATTTACCTCGATGAATCTGTTTTAACTTTTGGATTGTCCCCAAGGGGTAGCGTTGAGGCAAATGTCTTCAAAGCATGCTTCCTTGAGAGATTAGTTTGAGGCTGTTGGAAAGCGCTTAAACTAGAATACCCTTCAAAGTATCTCTGTGCCACAGCCTAGGGATGGGCCAGTGGTGTCCCGGATATAGGGGAGCGAAGCTTCGATTTCCCGATTTTCATTAAAAATAAAAAATAAAAAATAAAACTTTGAATTGATTGTTACTTTAACATGATTCAATCGTACCCTTCACATCTTAGTTTTCCAAGGTTCTTTAGACCATTGGGTCAACCGGTGTTGATGGTTTGCACACAATGCTTATTAATCTATCTGTTTGATTGAAAAAGTGTTCAATTGTTTATTTGGGTGTAAATTATGCAGGCCACATGTGTGGGGCCATTTTTGCCTATGCTATGAACGTTACAAGCTTATCGACGACAAATTATATATCCAATTACTTGGAATTAGGGATGGTGATCAGGTATGTTCCCCTACAACATTGCTTAATTTAAGATGTTTGAGCCTTGTCTTGTAATTGATATATATTGAGTAATTAATGAGTATTATGTTCCCCCATGCAGCTGCATTTTGTGAACCGTGTAGCTTAA

mRNA sequence

ATGTCGCCTGTTGAGCCGGATTTTCCCAATTCGTGCTGTATCTCTCGTCGGTTTCGGAGCTACAGTCTTCGCCGGAGTCTTCGCTACAAGAGGCTTCCGCCGGAGCTCCTCTGCCTCTCCGTCTTGAAATTGGACGGTTCCTCCTTCCAGGTGCAAGTTGCAAGGACGGCGACGGTGGCAAATCTTAGAGACGCAGTGGAGAGTGTTTTCTGCGAAATGTTGATGAATGAAGAAGATGTCAAGATTTCATGGCCACATGTGTGGGGCCATTTTTGCCTATGCTATGAACGTTACAAGCTTATCGACGACAAATTATATATCCAATTACTTGGAATTAGGGATGGTGATCAGCTGCATTTTGTGAACCGTGTAGCTTAA

Coding sequence (CDS)

ATGTCGCCTGTTGAGCCGGATTTTCCCAATTCGTGCTGTATCTCTCGTCGGTTTCGGAGCTACAGTCTTCGCCGGAGTCTTCGCTACAAGAGGCTTCCGCCGGAGCTCCTCTGCCTCTCCGTCTTGAAATTGGACGGTTCCTCCTTCCAGGTGCAAGTTGCAAGGACGGCGACGGTGGCAAATCTTAGAGACGCAGTGGAGAGTGTTTTCTGCGAAATGTTGATGAATGAAGAAGATGTCAAGATTTCATGGCCACATGTGTGGGGCCATTTTTGCCTATGCTATGAACGTTACAAGCTTATCGACGACAAATTATATATCCAATTACTTGGAATTAGGGATGGTGATCAGCTGCATTTTGTGAACCGTGTAGCTTAA

Protein sequence

MSPVEPDFPNSCCISRRFRSYSLRRSLRYKRLPPELLCLSVLKLDGSSFQVQVARTATVANLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYERYKLIDDKLYIQLLGIRDGDQLHFVNRVA

Homology

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BLAST of Sed0023402 vs. NCBI nr
Match: XP_023531556.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 197.6 bits (501), Expect = 6.4e-47
Identity = 95/125 (76.00%), Postives = 105/125 (84.00%), Query Frame = 0


Query: 1   MSPVEPDFPNSCCISRRFRSYSLRRSLRYKRLPPELLCLSVLKLDGSSFQVQVARTATVA 60
           MS +EP+ P+SCCIS RFRS S RRSLRY+RLP  LL LSVLKLDGSSF+VQVAR A+VA
Sbjct: 21  MSRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 80

Query: 61  NLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYERYKLIDDKLYIQLLGIRDGDQLHF 120
            LR+AVESVFC M MN EDVKISWPHVW HFCLCY+ YKLID+K  I+  GIRDGD LHF
Sbjct: 81  KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF 140

Query: 121 VNRVA 126
           VNRVA
Sbjct: 141 VNRVA 145

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BLAST of Sed0023402 vs. NCBI nr
Match: XP_022973901.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucurbita maxima])

HSP 1 Score: 197.6 bits (501), Expect = 6.4e-47
Identity = 94/125 (75.20%), Postives = 105/125 (84.00%), Query Frame = 0


Query: 1   MSPVEPDFPNSCCISRRFRSYSLRRSLRYKRLPPELLCLSVLKLDGSSFQVQVARTATVA 60
           M  +EP+ P+SCCIS RFRS S RRSLRY+RLP  LL LSVLKLDGSSF+VQVAR A+VA
Sbjct: 1   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 60

Query: 61  NLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYERYKLIDDKLYIQLLGIRDGDQLHF 120
            LR+AVESVFC MLMN EDVKISWPHVW HFCLCY+ YKLID+K  I+  GIRDGD LHF
Sbjct: 61  KLREAVESVFCGMLMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF 120

Query: 121 VNRVA 126
           VNR+A
Sbjct: 121 VNRIA 125

[Close]

BLAST of Sed0023402 vs. NCBI nr
Match: XP_023531557.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 197.6 bits (501), Expect = 6.4e-47
Identity = 95/125 (76.00%), Postives = 105/125 (84.00%), Query Frame = 0


Query: 1   MSPVEPDFPNSCCISRRFRSYSLRRSLRYKRLPPELLCLSVLKLDGSSFQVQVARTATVA 60
           MS +EP+ P+SCCIS RFRS S RRSLRY+RLP  LL LSVLKLDGSSF+VQVAR A+VA
Sbjct: 1   MSRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 60

Query: 61  NLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYERYKLIDDKLYIQLLGIRDGDQLHF 120
            LR+AVESVFC M MN EDVKISWPHVW HFCLCY+ YKLID+K  I+  GIRDGD LHF
Sbjct: 61  KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF 120

Query: 121 VNRVA 126
           VNRVA
Sbjct: 121 VNRVA 125

[Close]

BLAST of Sed0023402 vs. NCBI nr
Match: KAG7021772.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 195.7 bits (496), Expect = 2.4e-46
Identity = 94/125 (75.20%), Postives = 104/125 (83.20%), Query Frame = 0


Query: 1   MSPVEPDFPNSCCISRRFRSYSLRRSLRYKRLPPELLCLSVLKLDGSSFQVQVARTATVA 60
           M  +EP+ P+SCCIS RFRS S RRSLRY+RLP  LL LSVLKLDGSSF+VQVAR A+VA
Sbjct: 5   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 64

Query: 61  NLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYERYKLIDDKLYIQLLGIRDGDQLHF 120
            LR+AVESVFC M MN EDVKISWPHVW HFCLCY+ YKLID+K  I+  GIRDGD LHF
Sbjct: 65  KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF 124

Query: 121 VNRVA 126
           VNRVA
Sbjct: 125 VNRVA 129

[Close]

BLAST of Sed0023402 vs. NCBI nr
Match: XP_022927502.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucurbita moschata] >XP_022927511.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucurbita moschata])

HSP 1 Score: 195.7 bits (496), Expect = 2.4e-46
Identity = 94/125 (75.20%), Postives = 104/125 (83.20%), Query Frame = 0


Query: 1   MSPVEPDFPNSCCISRRFRSYSLRRSLRYKRLPPELLCLSVLKLDGSSFQVQVARTATVA 60
           M  +EP+ P+SCCIS RFRS S RRSLRY+RLP  LL LSVLKLDGSSF+VQVAR A+VA
Sbjct: 1   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 60

Query: 61  NLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYERYKLIDDKLYIQLLGIRDGDQLHF 120
            LR+AVESVFC M MN EDVKISWPHVW HFCLCY+ YKLID+K  I+  GIRDGD LHF
Sbjct: 61  KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF 120

Query: 121 VNRVA 126
           VNRVA
Sbjct: 121 VNRVA 125

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BLAST of Sed0023402 vs. ExPASy Swiss-Prot
Match: Q84WS8 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP25 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.7e-10
Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = 0


Query: 39  LSVLKLDGSSFQVQVARTATVANLRDAVESVFCEM-LMNEEDVKISWPHVWGHFCLCYER 98
           LSV+KLDGSS  V V  +AT+ +L+  ++    EM   N     ISW HVW +FCL    
Sbjct: 54  LSVVKLDGSSLDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSCNN 113

Query: 99  YKLIDDKLYIQLLGIRDGDQLHFV 122
            KL+DD   +Q +GIR+  Q+ F+
Sbjct: 114 EKLLDDNAVLQDVGIRNNSQVTFM 137

[Close]

BLAST of Sed0023402 vs. ExPASy Swiss-Prot
Match: Q9BV90 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP25 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 8.2e-05
Identity = 26/91 (28.57%), Postives = 50/91 (54.95%), Query Frame = 0


Query: 35  ELLCLSVLKLDGSSFQVQVARTATVANLRDAVESVFCEMLMNEEDVK-ISWPHVWGHFCL 94
           + + + V K+DG    V V ++ATV +L+ A++         E  ++ ISW +VW  + L
Sbjct: 39  QAMTVRVCKMDGEVMPVVVVQSATVLDLKKAIQRYVQLKQEREGGIQHISWSYVWRTYHL 98

Query: 95  CYERYKLIDDKLYIQLLGIRDGDQLHFVNRV 125
                KL +D+  ++  GIR+ D++ F+ ++
Sbjct: 99  TSAGEKLTEDRKKLRDYGIRNRDEVSFIKKL 129

[Close]

BLAST of Sed0023402 vs. ExPASy TrEMBL
Match: A0A6J1I9W9 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita maxima OX=3661 GN=LOC111472494 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 3.1e-47
Identity = 94/125 (75.20%), Postives = 105/125 (84.00%), Query Frame = 0


Query: 1   MSPVEPDFPNSCCISRRFRSYSLRRSLRYKRLPPELLCLSVLKLDGSSFQVQVARTATVA 60
           M  +EP+ P+SCCIS RFRS S RRSLRY+RLP  LL LSVLKLDGSSF+VQVAR A+VA
Sbjct: 1   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 60

Query: 61  NLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYERYKLIDDKLYIQLLGIRDGDQLHF 120
            LR+AVESVFC MLMN EDVKISWPHVW HFCLCY+ YKLID+K  I+  GIRDGD LHF
Sbjct: 61  KLREAVESVFCGMLMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF 120

Query: 121 VNRVA 126
           VNR+A
Sbjct: 121 VNRIA 125

[Close]

BLAST of Sed0023402 vs. ExPASy TrEMBL
Match: A0A6J1EHC7 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita moschata OX=3662 GN=LOC111434307 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.2e-46
Identity = 94/125 (75.20%), Postives = 104/125 (83.20%), Query Frame = 0


Query: 1   MSPVEPDFPNSCCISRRFRSYSLRRSLRYKRLPPELLCLSVLKLDGSSFQVQVARTATVA 60
           M  +EP+ P+SCCIS RFRS S RRSLRY+RLP  LL LSVLKLDGSSF+VQVAR A+VA
Sbjct: 1   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 60

Query: 61  NLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYERYKLIDDKLYIQLLGIRDGDQLHF 120
            LR+AVESVFC M MN EDVKISWPHVW HFCLCY+ YKLID+K  I+  GIRDGD LHF
Sbjct: 61  KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF 120

Query: 121 VNRVA 126
           VNRVA
Sbjct: 121 VNRVA 125

[Close]

BLAST of Sed0023402 vs. ExPASy TrEMBL
Match: A0A0A0LT94 (Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G231020 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 2.0e-46
Identity = 93/121 (76.86%), Postives = 102/121 (84.30%), Query Frame = 0


Query: 1   MSPVEPDFPNSCCISRRFRSYSLRRSLRYKRLPPELLCLSVLKLDGSSFQVQVARTATVA 60
           MS +EP  P+SCCIS RF S S RRSLRY RLPP+LL LSVLKLDGSSF+VQV RTATVA
Sbjct: 1   MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60

Query: 61  NLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYERYKLIDDKLYIQLLGIRDGDQLHF 120
            +RDAVESVFCEM MN+ED  ISWPHVWGHFCLCY+ +KL+DDK  IQ  GIRDGDQLHF
Sbjct: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120

Query: 121 V 122
           V
Sbjct: 121 V 121

[Close]

BLAST of Sed0023402 vs. ExPASy TrEMBL
Match: A0A6J1CUD1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Momordica charantia OX=3673 GN=LOC111014434 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.6e-46
Identity = 94/128 (73.44%), Postives = 109/128 (85.16%), Query Frame = 0


Query: 1   MSPVEPDFPNSC---CISRRFRSYSLRRSLRYKRLPPELLCLSVLKLDGSSFQVQVARTA 60
           MS VE DFP SC    +S R RS S RRSL Y+RLPP+LL LSVLKLDGSSF+VQVAR A
Sbjct: 1   MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKA 60

Query: 61  TVANLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYERYKLIDDKLYIQLLGIRDGDQ 120
           TVA+LRDAVESVFC+++MN+ED KISWPHVWGHFCLCY+ +KLI+DK +I+  GIRDG+Q
Sbjct: 61  TVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQ 120

Query: 121 LHFVNRVA 126
           LHFVNRVA
Sbjct: 121 LHFVNRVA 128

[Close]

BLAST of Sed0023402 vs. ExPASy TrEMBL
Match: A0A5A7U4H4 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00840 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 3.4e-46
Identity = 92/121 (76.03%), Postives = 102/121 (84.30%), Query Frame = 0


Query: 1   MSPVEPDFPNSCCISRRFRSYSLRRSLRYKRLPPELLCLSVLKLDGSSFQVQVARTATVA 60
           MS +EP  P+SCCIS RF + S RRSLRY RLPP+LL LSVLKLDGSSF+VQV RTATVA
Sbjct: 4   MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 63

Query: 61  NLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYERYKLIDDKLYIQLLGIRDGDQLHF 120
            +RDAVESVFCEM MN+ED  ISWPHVWGHFCLCY+ +KL+DDK  IQ  GIRDGDQLHF
Sbjct: 64  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 123

Query: 121 V 122
           V
Sbjct: 124 V 124

[Close]

BLAST of Sed0023402 vs. TAIR 10
Match: AT4G32270.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 109.4 bits (272), Expect = 2.1e-24
Identity = 52/102 (50.98%), Postives = 71/102 (69.61%), Query Frame = 0


Query: 24  RRSLRYKRLPPELLCLSVLKLDGSSFQVQVARTATVANLRDAVESVFCEMLMNEEDVKIS 83
           RRS  Y ++P E + L+VLKLDGSSF +QV +TATV  L+ AVE+ F  + ++    KIS
Sbjct: 25  RRSFNYNQMPEEPIKLTVLKLDGSSFGIQVLKTATVGELKMAVEAAFSHLPISGPG-KIS 84

Query: 84  WPHVWGHFCLCYERYKLIDDKLYIQLLGIRDGDQLHFVNRVA 126
           WPHVWG FCL YE  +LI++  Y+   GI+DGDQL F+  ++
Sbjct: 85  WPHVWGQFCLSYEDKRLINESEYLTEFGIKDGDQLRFIRHIS 125

[Close]

BLAST of Sed0023402 vs. TAIR 10
Match: AT1G80060.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 104.4 bits (259), Expect = 6.9e-23
Identity = 60/125 (48.00%), Postives = 82/125 (65.60%), Query Frame = 0


Query: 2   SPVEPDFPNSCCISRRFRSYSLRRSLRYKRLPPE-LLCLSVLKLDGSSFQVQVARTATVA 61
           S ++P F +S  ++    S S RRS  Y +LPP+  + LSV+KL+GS F V+VA+  +VA
Sbjct: 19  SLIDPRFLSSFALNDG-GSISGRRS-SYLKLPPQGRIKLSVVKLNGSLFDVEVAKDCSVA 78

Query: 62  NLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYERYKLIDDKLYIQLLGIRDGDQLHF 121
            L+ AVE VF    + E    ISW HVWGHFCLCY   +L++DK  I+ LG+ DGDQLHF
Sbjct: 79  ELKRAVEQVFTISPL-EGHGMISWSHVWGHFCLCYRDQRLVNDKTSIRYLGLNDGDQLHF 138

Query: 122 VNRVA 126
           V  ++
Sbjct: 139 VRHLS 140

[Close]

BLAST of Sed0023402 vs. TAIR 10
Match: AT5G25340.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 99.8 bits (247), Expect = 1.7e-21
Identity = 51/102 (50.00%), Postives = 67/102 (65.69%), Query Frame = 0


Query: 24  RRSLRYKRLPPELLCLSVLKLDGSSFQVQVARTATVANLRDAVESVFCEMLMNEEDVKIS 83
           RR+  Y +LP E + LSVLKLDGSSF V V  +ATV +L+ A+E+ F   +  +   KIS
Sbjct: 6   RRTFSYDKLPNEPIRLSVLKLDGSSFDVYVLTSATVGDLKVAIETAFSH-VPKKGPSKIS 65

Query: 84  WPHVWGHFCLCYERYKLIDDKLYIQLLGIRDGDQLHFVNRVA 126
           W HVWGHFCLC+   KLI D   I   G++DGD++ F N V+
Sbjct: 66  WSHVWGHFCLCFGGQKLITDTDCIGNYGMKDGDEVRFKNHVS 106

[Close]

BLAST of Sed0023402 vs. TAIR 10
Match: AT4G32270.2 (Ubiquitin-like superfamily protein )

HSP 1 Score: 93.6 bits (231), Expect = 1.2e-19
Identity = 47/94 (50.00%), Postives = 64/94 (68.09%), Query Frame = 0


Query: 32  LPPELLCLSVLKLDGSSFQVQVARTATVANLRDAVESVFCEMLMNEEDVKISWPHVWGHF 91
           +P E + L+VLKLDGSSF   V +TATV  L+ AVE+ F  + ++    KISWPHVWG F
Sbjct: 1   MPEEPIKLTVLKLDGSSF---VLKTATVGELKMAVEAAFSHLPISGPG-KISWPHVWGQF 60

Query: 92  CLCYERYKLIDDKLYIQLLGIRDGDQLHFVNRVA 126
           CL YE  +LI++  Y+   GI+DGDQL F+  ++
Sbjct: 61  CLSYEDKRLINESEYLTEFGIKDGDQLRFIRHIS 90

[Close]

BLAST of Sed0023402 vs. TAIR 10
Match: AT3G07860.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-11
Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = 0


Query: 39  LSVLKLDGSSFQVQVARTATVANLRDAVESVFCEM-LMNEEDVKISWPHVWGHFCLCYER 98
           LSV+KLDGSS  V V  +AT+ +L+  ++    EM   N     ISW HVW +FCL    
Sbjct: 54  LSVVKLDGSSLDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSCNN 113

Query: 99  YKLIDDKLYIQLLGIRDGDQLHFV 122
            KL+DD   +Q +GIR+  Q+ F+
Sbjct: 114 EKLLDDNAVLQDVGIRNNSQVTFM 137

The following BLAST results are available for this feature:

BLAST of Sed0023402 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023531556.1	6.4e-47	76.00	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucurbit...	[more]
XP_022973901.1	6.4e-47	75.20	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucurbita maxima]	[more]
XP_023531557.1	6.4e-47	76.00	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucurbit...	[more]
KAG7021772.1	2.4e-46	75.20	U11/U12 small nuclear ribonucleoprotein 25 kDa protein, partial [Cucurbita argyr...	[more]
XP_022927502.1	2.4e-46	75.20	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucurbita moschata]...	[more]

BLAST of Sed0023402 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84WS8	1.7e-10	42.86	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana O...	[more]
Q9BV90	8.2e-05	28.57	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 G...	[more]

BLAST of Sed0023402 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I9W9	3.1e-47	75.20	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita maxima ...	[more]
A0A6J1EHC7	1.2e-46	75.20	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita moschat...	[more]
A0A0A0LT94	2.0e-46	76.86	Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G231020...	[more]
A0A6J1CUD1	2.6e-46	73.44	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Momordica charant...	[more]
A0A5A7U4H4	3.4e-46	76.03	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumi...	[more]

BLAST of Sed0023402 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32270.1	2.1e-24	50.98	Ubiquitin-like superfamily protein	[more]
AT1G80060.1	6.9e-23	48.00	Ubiquitin-like superfamily protein	[more]
AT5G25340.1	1.7e-21	50.00	Ubiquitin-like superfamily protein	[more]
AT4G32270.2	1.2e-19	50.00	Ubiquitin-like superfamily protein	[more]
AT3G07860.1	1.2e-11	42.86	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040610	SNRNP25, ubiquitin-like domain	PFAM	PF18036	Ubiquitin_4	coord: 39..124 e-value: 1.1E-24 score: 86.3
IPR040610	SNRNP25, ubiquitin-like domain	CDD	cd17058	Ubl_SNRNP25	coord: 39..123 e-value: 3.88719E-35 score: 114.538
None	No IPR available	GENE3D	3.10.20.90		coord: 35..125 e-value: 1.6E-31 score: 110.1
None	No IPR available	PANTHER	PTHR14942:SF2	UBIQUITIN-LIKE SUPERFAMILY PROTEIN	coord: 5..124
IPR039690	U11/U12 small nuclear ribonucleoprotein 25kDa protein	PANTHER	PTHR14942	U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN	coord: 5..124
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 33..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0023402.1	Sed0023402.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005689	U12-type spliceosomal complex