Sed0023316 (gene) Chayote v1

Overview
NameSed0023316
Typegene
OrganismSechium edule (Chayote v1)
DescriptionSuccinate dehydrogenase assembly factor 4, mitochondrial
LocationLG05: 2817085 .. 2819424 (+)
RNA-Seq ExpressionSed0023316
SyntenySed0023316
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CACCTTTTGGTTTTCATCCAAACACGTCTATACCAAAATCAACGACACGTGGCAGGTTTTAATCCGTCTACACGACGTCGTATTACCGAAAGATAAATACCGATTTTTTCACCGACCAGCCGCCGGCCGTTTGTAGATCCCGATTGAGAGAAGAAGAATGTCGAGCAATCTCAGCCGTCTATTCTCGCCGCCGCCGCCAAGTCTCACCGCCGGAACGGCGGTGAGTCGTCTCACTTCCATCTCGTTAGGCCGATTCTTTGGCTCCTCAGCGAATCAGCCACCTTCTCCACCGGAGCGAGGAGTTTCCGGCGAGGGGAAACGAGAGGCTGGAAAAGGAAGCTCGTCGGATCAACGCGAGGCTGCCGGAGATGATCAAGACGGTGAAGATGAAGGAGTTGATCTGAATGAAGCTACTGGTGAGGTCGGTGGACCTAAAGGCCCTGAGCCTACTCGCTACGGTGATTGGGAACGGAACGGTCGGTGCTCCGATTTTTGACGTTTCGAGGTTAGATTCTGAACAAGATCATTGAATGATGTGATTTCTAACTCAATTTCGTGGCCTTTGTTTCTGTAATCGGAGTTCTTGTTTCGTTTTGATTCTAGATAGAACGAAAATTAGAATAATTCTGTTCAGCTTTTCAATAATACTTGATTCTGTTGTCTTCTTGGATTTCGTTTTCTGTTCTATAACCAGGATTTGTCAAATTCTGTCCAAATCTGTATAGCTAGTTAAACAATTTTTTTGAAGAGATTGTAGGAGGGAGATCAGTTTATTAGGATGGTTCGAATCTGGTTGAATTCTTCTTATGATTTTTGACATTTCGAGGTTAGATTCTGAACAAGATCATTGAATGATGTGATTTCTGTTACTCAATTTCGTGGCCTTTGTTTCTGTAATCCGAATTTTTGTTTCAGTTTTCTGTAGATTGATTTCGAGATAGAACGGAAATTAGACTAACTTTATTCAGCTTTTCAATAATTCTTGATTCTGGTTATCTTCTTGCATTTTTACAGCCAGGTTTTGTCAAATTCTGTCCAAATTTGTGTTCATAAGGATTGAAAGTCAGTTTAAACCACTTTTTTTTTAAACAAGAGTAACTAGGCTAGGCCAGACATCGGAGACATTGAATGAGTAATGTCACATATGAGTCTTGAACCTAGGACCTTGAAAGTAGCATACTTTCAAAGCCCAAGTTTTCAACCACTTTTAGATTCATGTTATTTTTTTTATATGTCGGGGCCAGCCTCCCCACACCTTGACTATTGTCACGAATATAACGTGACCCTATAACATGTGGAAACCTTATTATAATTGGATATCAAAGAAATTCTTAGGTAAGCGAATAGCTATTACTATAAATGGAATTCATTACATCTTAGGTTTTCTATGTCCTCTTGATTAAGACCACTCTATGATGTTGTTTGGGTACATGTTATTATAACCACCATTAGGATAACATTGTTTTGTTTGGAGCAGTTTAGGCCAATCCACCGATTATTATAATGGATGGACCAAATGTAGTTAGGTTAACCTTCTTTTTACATAAATAGCCTCAAAGGGTGGCGCAGTGGTTGAAAACTTGAGCTTTGAAAGTATGCTTCCCTCAAGGTTCCAAACTCGAGACTCACATGTGACATTATTCTTTCAATATTTCAAGTATTTGGCCTAGGTACGGGCATGGTTACCTTGTCCCAAAATAAATAGCCCCAAATGGGAATCATATGAATGTTGAAATCTATTTGAAATCTTCTTACCAATTCAACTTCTTACCAATTCAACTTCACACAGATTTGTTTGAGGTTTCATTTTAATTCTGAACTTCATTACAATGTGGATATGGATATTCTGAACGAAAATTTGCTTATTTTAACTGTGTATTCTCACTATTCAGTGTAGTAGTTCATTTTAGTTTTTTTAGGGCTGCATTATAGAGAACTAAAAAAAATGGTAGGTTTCAATAATACTCCTAAAATTTAAGAACTTTCAAACATTCCCCTTATCTTCTTTTCAGAACGTTTTGTTTCAATAATAACTTAAAAAGTTTCAAATATTTTTTTTTTTTTAAATGTTCAATAATGGCTTGGCCTTTTGCAGCACAGGAAAAGGCATTGTAAAATGGGAATTTGTCTGCTTTGGTTGGTTTTGAGATAGGAGCAAGTTGTAAGATGGAAAATGACTACCAGATAGCTGAGTTGAGACTTAAGTGCTTGGTTGGGTTTTTTTTTTCCAGAATAGTAGCAACAATAATAGAACCATTTGTTTGTATTTGGTAGTAATTTTAACCACTCACTTAACTACTATATTAATACCCATATCTAAATATTTCGTTTTAAAAATAA

mRNA sequence

CACCTTTTGGTTTTCATCCAAACACGTCTATACCAAAATCAACGACACGTGGCAGGTTTTAATCCGTCTACACGACGTCGTATTACCGAAAGATAAATACCGATTTTTTCACCGACCAGCCGCCGGCCGTTTGTAGATCCCGATTGAGAGAAGAAGAATGTCGAGCAATCTCAGCCGTCTATTCTCGCCGCCGCCGCCAAGTCTCACCGCCGGAACGGCGGTGAGTCGTCTCACTTCCATCTCGTTAGGCCGATTCTTTGGCTCCTCAGCGAATCAGCCACCTTCTCCACCGGAGCGAGGAGTTTCCGGCGAGGGGAAACGAGAGGCTGGAAAAGGAAGCTCGTCGGATCAACGCGAGGCTGCCGGAGATGATCAAGACGGTGAAGATGAAGGAGTTGATCTGAATGAAGCTACTGGTGAGGTCGGTGGACCTAAAGGCCCTGAGCCTACTCGCTACGGTGATTGGGAACGGAACGGTCGGTGCTCCGATTTTTGACGTTTCGAGGTTAGATTCTGAACAAGATCATTGAATGATGTGATTTCTAACTCAATTTCGTGGCCTTTGTTTCTGTAATCGGAGTTCTTGTTTCGTTTTGATTCTAGATAGAACGAAAATTAGAATAATTCTGTTCAGCTTTTCAATAATACTTGATTCTGTTGTCTTCTTGGATTTCGTTTTCTGTTCTATAACCAGGATTTGTCAAATTCTGTCCAAATCTGTATAGCTAGTTAAACAATTTTTTTGAAGAGATTGTAGGAGGGAGATCAGTTTATTAGGATGGTTCGAATCTGGTTGAATTCTTCTTATGATTTTTGACATTTCGAGGAAAAGGCATTGTAAAATGGGAATTTGTCTGCTTTGGTTGGTTTTGAGATAGGAGCAAGTTGTAAGATGGAAAATGACTACCAGATAGCTGAGTTGAGACTTAAGTGCTTGGTTGGGTTTTTTTTTTCCAGAATAGTAGCAACAATAATAGAACCATTTGTTTGTATTTGGTAGTAATTTTAACCACTCACTTAACTACTATATTAATACCCATATCTAAATATTTCGTTTTAAAAATAA

Coding sequence (CDS)

ATGTCGAGCAATCTCAGCCGTCTATTCTCGCCGCCGCCGCCAAGTCTCACCGCCGGAACGGCGGTGAGTCGTCTCACTTCCATCTCGTTAGGCCGATTCTTTGGCTCCTCAGCGAATCAGCCACCTTCTCCACCGGAGCGAGGAGTTTCCGGCGAGGGGAAACGAGAGGCTGGAAAAGGAAGCTCGTCGGATCAACGCGAGGCTGCCGGAGATGATCAAGACGGTGAAGATGAAGGAGTTGATCTGAATGAAGCTACTGGTGAGGTCGGTGGACCTAAAGGCCCTGAGCCTACTCGCTACGGTGATTGGGAACGGAACGGTCGGTGCTCCGATTTTTGA

Protein sequence

MSSNLSRLFSPPPPSLTAGTAVSRLTSISLGRFFGSSANQPPSPPERGVSGEGKREAGKGSSSDQREAAGDDQDGEDEGVDLNEATGEVGGPKGPEPTRYGDWERNGRCSDF
Homology
[Close]
BLAST of Sed0023316 vs. NCBI nr
Match: XP_022957978.1 (succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita moschata])

HSP 1 Score: 152.9 bits (385), Expect = 1.6e-33
Identity = 84/112 (75.00%), Postives = 93/112 (83.04%), Query Frame = 0 

Query: 1   MSSNLSRLFSPPPPSLTAGTAVSRLTSISLGRFFGSSANQPPSPPERGVSGEGKREAGKG 60
           MSSNL+RLFS  PPSLTA +AV+R TSIS+ R   SSANQ PS  E+GV GE +REAGKG
Sbjct: 1   MSSNLTRLFS--PPSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKG 60

Query: 61  SSSDQREAAGDDQDGEDEGVDLNEATGEVGGPKGPEPTRYGDWERNGRCSDF 113
           S  DQ EAAGDD+D EDEG D+N+ATGEVGGPKGPEPTRYGDWERNGRC DF
Sbjct: 61  SLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF 110

[Close]
BLAST of Sed0023316 vs. NCBI nr
Match: XP_023532848.1 (succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 151.8 bits (382), Expect = 3.6e-33
Identity = 83/112 (74.11%), Postives = 93/112 (83.04%), Query Frame = 0 

Query: 1   MSSNLSRLFSPPPPSLTAGTAVSRLTSISLGRFFGSSANQPPSPPERGVSGEGKREAGKG 60
           MSSNL+RLFS  PPSLT+ +AV+R TSIS+ R   SSANQ PS  E+GV GE +REAGKG
Sbjct: 1   MSSNLTRLFS--PPSLTSLSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKG 60

Query: 61  SSSDQREAAGDDQDGEDEGVDLNEATGEVGGPKGPEPTRYGDWERNGRCSDF 113
           S  DQ EAAGDD+D EDEG D+N+ATGEVGGPKGPEPTRYGDWERNGRC DF
Sbjct: 61  SLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF 110

[Close]
BLAST of Sed0023316 vs. NCBI nr
Match: KAG6605777.1 (Succinate dehydrogenase assembly factor 4, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035745.1 Succinate dehydrogenase assembly factor 4, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151.8 bits (382), Expect = 3.6e-33
Identity = 83/112 (74.11%), Postives = 93/112 (83.04%), Query Frame = 0 

Query: 1   MSSNLSRLFSPPPPSLTAGTAVSRLTSISLGRFFGSSANQPPSPPERGVSGEGKREAGKG 60
           MSSNL+RLFS  PPSLTA +AV+R TSIS+ R   SSANQ PS  E+GV G+ +REAGKG
Sbjct: 1   MSSNLTRLFS--PPSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGDEQREAGKG 60

Query: 61  SSSDQREAAGDDQDGEDEGVDLNEATGEVGGPKGPEPTRYGDWERNGRCSDF 113
           S  DQ EAAGDD+D EDEG D+N+ATGEVGGPKGPEPTRYGDWERNGRC DF
Sbjct: 61  SLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF 110

[Close]
BLAST of Sed0023316 vs. NCBI nr
Match: XP_022995844.1 (succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita maxima])

HSP 1 Score: 151.8 bits (382), Expect = 3.6e-33
Identity = 83/112 (74.11%), Postives = 93/112 (83.04%), Query Frame = 0 

Query: 1   MSSNLSRLFSPPPPSLTAGTAVSRLTSISLGRFFGSSANQPPSPPERGVSGEGKREAGKG 60
           MSSNL+RLFS  PPSLTA +AV+R+TS S+ R   SSANQ PS  E+GV GE +REAGKG
Sbjct: 1   MSSNLTRLFS--PPSLTALSAVNRVTSTSVSRLVSSSANQQPSRLEQGVPGEEQREAGKG 60

Query: 61  SSSDQREAAGDDQDGEDEGVDLNEATGEVGGPKGPEPTRYGDWERNGRCSDF 113
           S  DQ EAAGDD+D EDEG D+N+ATGEVGGPKGPEPTRYGDWERNGRC DF
Sbjct: 61  SLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF 110

[Close]
BLAST of Sed0023316 vs. NCBI nr
Match: KGN49871.1 (hypothetical protein Csa_000062 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 6.4e-30
Identity = 79/112 (70.54%), Postives = 90/112 (80.36%), Query Frame = 0 

Query: 1   MSSNLSRLFSPPPPSLTAGTAVSRLTSISLGRFFGSSANQPPSPPERGVSGEGKREAGKG 60
           MSSNLSRLFS  PP+L+A  AVSRLT  SL RF  SS+NQ PS  E+GVS E +REAGKG
Sbjct: 1   MSSNLSRLFS-SPPTLSALPAVSRLTFNSLSRFVSSSSNQQPSRLEKGVSSEEQREAGKG 60

Query: 61  SSSDQREAAGDDQDGEDEGVDLNEATGEVGGPKGPEPTRYGDWERNGRCSDF 113
           SS ++ EAAGDD+ G+DEGVD  + T E+GGPKGPEPTRYGDWER GRCSDF
Sbjct: 61  SSPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYGDWERKGRCSDF 111

[Close]
BLAST of Sed0023316 vs. ExPASy Swiss-Prot
Match: Q54Y25 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Dictyostelium discoideum OX=44689 GN=DDB_G0278459 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 9.3e-08
Identity = 24/31 (77.42%), Postives = 26/31 (83.87%), Query Frame = 0 

Query: 82  LNEATGEVGGPKGPEPTRYGDWERNGRCSDF 113
           +N  T E+GGPKGPEPTRY DWERNGR SDF
Sbjct: 78  VNPITKEIGGPKGPEPTRYNDWERNGRVSDF 108

[Close]
BLAST of Sed0023316 vs. ExPASy Swiss-Prot
Match: Q9VLU6 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Drosophila melanogaster OX=7227 GN=Sirup PE=3 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 1.6e-07
Identity = 24/30 (80.00%), Postives = 25/30 (83.33%), Query Frame = 0 

Query: 83  NEATGEVGGPKGPEPTRYGDWERNGRCSDF 113
           N  TGE+GGP GPEPTRYGDWER GR SDF
Sbjct: 89  NPYTGEIGGPAGPEPTRYGDWERKGRVSDF 118

[Close]
BLAST of Sed0023316 vs. ExPASy Swiss-Prot
Match: Q8BTE0 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Mus musculus OX=10090 GN=Sdhaf4 PE=3 SV=2)

HSP 1 Score: 51.6 bits (122), Expect = 6.7e-06
Identity = 34/71 (47.89%), Postives = 39/71 (54.93%), Query Frame = 0 

Query: 52  EGKREAGKGSSSDQREAAG-----DDQDGEDEGV-----DLNEATGEVGGPKGPEPTRYG 111
           EGK E  K +    +   G     +D   E E +     D+N  T E GGPKGPEPTRYG
Sbjct: 34  EGKPEPAKQALKKSKLPLGRFDSLEDSPEEREPLQKFPDDVNPVTKEKGGPKGPEPTRYG 93

Query: 112 DWERNGRCSDF 113
           DWER GRC DF
Sbjct: 94  DWERKGRCIDF 104

[Close]
BLAST of Sed0023316 vs. ExPASy Swiss-Prot
Match: Q5VUM1 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Homo sapiens OX=9606 GN=SDHAF4 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 4.3e-05
Identity = 34/75 (45.33%), Postives = 41/75 (54.67%), Query Frame = 0 

Query: 43  SPPERGVSGEGKREAGKGSSSDQREAAGDDQDGEDEGV-----DLNEATGEVGGPKGPEP 102
           S  + G S   K+   K    + R  A +D   E E +     D+N  T E GGP+GPEP
Sbjct: 34  SSSQGGKSELVKQSLKKPKLPEGRFDAPEDSHLEKEPLEKFPDDVNPVTKEKGGPRGPEP 93

Query: 103 TRYGDWERNGRCSDF 113
           TRYGDWER GRC DF
Sbjct: 94  TRYGDWERKGRCIDF 108

[Close]
BLAST of Sed0023316 vs. ExPASy TrEMBL
Match: A0A6J1H1T7 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111459345 PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 7.9e-34
Identity = 84/112 (75.00%), Postives = 93/112 (83.04%), Query Frame = 0 

Query: 1   MSSNLSRLFSPPPPSLTAGTAVSRLTSISLGRFFGSSANQPPSPPERGVSGEGKREAGKG 60
           MSSNL+RLFS  PPSLTA +AV+R TSIS+ R   SSANQ PS  E+GV GE +REAGKG
Sbjct: 1   MSSNLTRLFS--PPSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKG 60

Query: 61  SSSDQREAAGDDQDGEDEGVDLNEATGEVGGPKGPEPTRYGDWERNGRCSDF 113
           S  DQ EAAGDD+D EDEG D+N+ATGEVGGPKGPEPTRYGDWERNGRC DF
Sbjct: 61  SLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF 110

[Close]
BLAST of Sed0023316 vs. ExPASy TrEMBL
Match: A0A6J1K722 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111491251 PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.8e-33
Identity = 83/112 (74.11%), Postives = 93/112 (83.04%), Query Frame = 0 

Query: 1   MSSNLSRLFSPPPPSLTAGTAVSRLTSISLGRFFGSSANQPPSPPERGVSGEGKREAGKG 60
           MSSNL+RLFS  PPSLTA +AV+R+TS S+ R   SSANQ PS  E+GV GE +REAGKG
Sbjct: 1   MSSNLTRLFS--PPSLTALSAVNRVTSTSVSRLVSSSANQQPSRLEQGVPGEEQREAGKG 60

Query: 61  SSSDQREAAGDDQDGEDEGVDLNEATGEVGGPKGPEPTRYGDWERNGRCSDF 113
           S  DQ EAAGDD+D EDEG D+N+ATGEVGGPKGPEPTRYGDWERNGRC DF
Sbjct: 61  SLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF 110

[Close]
BLAST of Sed0023316 vs. ExPASy TrEMBL
Match: A0A0A0KQ66 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucumis sativus OX=3659 GN=Csa_5G139490 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 3.1e-30
Identity = 79/112 (70.54%), Postives = 90/112 (80.36%), Query Frame = 0 

Query: 1   MSSNLSRLFSPPPPSLTAGTAVSRLTSISLGRFFGSSANQPPSPPERGVSGEGKREAGKG 60
           MSSNLSRLFS  PP+L+A  AVSRLT  SL RF  SS+NQ PS  E+GVS E +REAGKG
Sbjct: 1   MSSNLSRLFS-SPPTLSALPAVSRLTFNSLSRFVSSSSNQQPSRLEKGVSSEEQREAGKG 60

Query: 61  SSSDQREAAGDDQDGEDEGVDLNEATGEVGGPKGPEPTRYGDWERNGRCSDF 113
           SS ++ EAAGDD+ G+DEGVD  + T E+GGPKGPEPTRYGDWER GRCSDF
Sbjct: 61  SSPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYGDWERKGRCSDF 111

[Close]
BLAST of Sed0023316 vs. ExPASy TrEMBL
Match: A0A5A7TMD3 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00530 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 2.1e-26
Identity = 73/112 (65.18%), Postives = 85/112 (75.89%), Query Frame = 0 

Query: 1   MSSNLSRLFSPPPPSLTAGTAVSRLTSISLGRFFGSSANQPPSPPERGVSGEGKREAGKG 60
           MSS+LSRLFS  PP+L+A   V RLTS SL RF  SS+NQ PS  E+GVS E +REA KG
Sbjct: 1   MSSHLSRLFS-SPPTLSALPTVGRLTSNSLSRFVSSSSNQQPSRSEQGVSSEEQREAEKG 60

Query: 61  SSSDQREAAGDDQDGEDEGVDLNEATGEVGGPKGPEPTRYGDWERNGRCSDF 113
           SS +Q EAAGDD+  +D+GVD  +   E+GGPKG EPTRYGDWERNGRC DF
Sbjct: 61  SSPNQHEAAGDDRGSQDQGVDTEKMAPEIGGPKGHEPTRYGDWERNGRCYDF 111

[Close]
BLAST of Sed0023316 vs. ExPASy TrEMBL
Match: C5Z4E8 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Sorghum bicolor OX=4558 GN=SORBI_3010G045300 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.0e-13
Identity = 52/114 (45.61%), Postives = 70/114 (61.40%), Query Frame = 0 

Query: 1   MSSNLSRLFSPPPPSLTAGTAVSRLTSISLGRFFGSSANQPP--SPPERGVSGEGKREAG 60
           ++S +S +  PPP         S L  ++L     S+   PP  +PPE    GEG+ EA 
Sbjct: 10  LASAVSHVPQPPP-----APPASILLRVALSSSAPSTGPPPPPTAPPEAAGKGEGE-EAA 69

Query: 61  KGSSSDQREAAGDDQDGEDEGVDLNEATGEVGGPKGPEPTRYGDWERNGRCSDF 113
           +   +D    AG ++D +D GV +N+ATGE+GGP+GPEPTRYGDWER GRCSDF
Sbjct: 70  EAKGADVDAEAGKEEDEDDGGVHVNKATGEIGGPRGPEPTRYGDWERGGRCSDF 117

[Close]
BLAST of Sed0023316 vs. TAIR 10
Match: AT5G67490.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1674 (InterPro:IPR012875); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 61.2 bits (147), Expect = 6.0e-10
Identity = 40/113 (35.40%), Postives = 61/113 (53.98%), Query Frame = 0 

Query: 2   SSNLSRLFSPPPPSLTAGTAVSRLTSISLGRFFGSSANQPPS--PPERGVSGEGKREAGK 61
           ++N+ RL +P         +VS      + RF  S    PP    P + ++ + K +   
Sbjct: 3   TNNIVRLIAP-------SRSVSSRFLEPVSRFLSSGTPPPPQAPSPNQDLNRDVKPDQNL 62

Query: 62  GSSSDQREAAGDDQDGEDEGVDLNEATGEVGGPKGPEPTRYGDWERNGRCSDF 113
             +   ++   ++ +G   G  +NE TGE+GGP+GPEPTRYGDWE+ GRCSDF
Sbjct: 63  QQNLQMQKEEEEEGEGGGGGEFVNEDTGEIGGPRGPEPTRYGDWEQRGRCSDF 108

The following BLAST results are available for this feature:
BLAST of Sed0023316 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022957978.11.6e-3375.00succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita moschata][more]
XP_023532848.13.6e-3374.11succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita pepo subsp. ... [more]
KAG6605777.13.6e-3374.11Succinate dehydrogenase assembly factor 4, mitochondrial, partial [Cucurbita arg... [more]
XP_022995844.13.6e-3374.11succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita maxima][more]
KGN49871.16.4e-3070.54hypothetical protein Csa_000062 [Cucumis sativus][more]
BLAST of Sed0023316 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q54Y259.3e-0877.42Succinate dehydrogenase assembly factor 4, mitochondrial OS=Dictyostelium discoi... [more]
Q9VLU61.6e-0780.00Succinate dehydrogenase assembly factor 4, mitochondrial OS=Drosophila melanogas... [more]
Q8BTE06.7e-0647.89Succinate dehydrogenase assembly factor 4, mitochondrial OS=Mus musculus OX=1009... [more]
Q5VUM14.3e-0545.33Succinate dehydrogenase assembly factor 4, mitochondrial OS=Homo sapiens OX=9606... [more]
BLAST of Sed0023316 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1H1T77.9e-3475.00Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucurbita moschata O... [more]
A0A6J1K7221.8e-3374.11Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucurbita maxima OX=... [more]
A0A0A0KQ663.1e-3070.54Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucumis sativus OX=3... [more]
A0A5A7TMD32.1e-2665.18Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucumis melo var. ma... [more]
C5Z4E82.0e-1345.61Succinate dehydrogenase assembly factor 4, mitochondrial OS=Sorghum bicolor OX=4... [more]
BLAST of Sed0023316 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G67490.16.0e-1035.40unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1674... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012875Succinate dehydrogenase assembly factor 4PFAMPF07896DUF1674coord: 77..112
e-value: 7.1E-17
score: 61.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..112
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 98..112
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..69
NoneNo IPR availablePANTHERPTHR28524SUCCINATE DEHYDROGENASE ASSEMBLY FACTOR 4, MITOCHONDRIALcoord: 1..112

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0023316.2Sed0023316.2mRNA
Sed0023316.3Sed0023316.3mRNA
Sed0023316.1Sed0023316.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034553 mitochondrial respiratory chain complex II assembly
cellular_component GO:0005739 mitochondrion