Sed0023217 (gene) Chayote v1

Overview


Name	Sed0023217
Type	gene
Organism	Sechium edule (Chayote v1)
Description	glycine-rich cell wall structural protein 1.8-like
Location	LG04: 7215159 .. 7216306 (+)
RNA-Seq Expression	Sed0023217
Synteny	Sed0023217

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATACAAAGAGTTTTGTGCCTTGGCCTTCTTCTCCTTGTGAGTTTAGGCTTAGCTTCCGCAGCTAGAAGCCTTCTAGTTTATGATCCTCCTGCACACCACAATGAGTATGATCGCCCCAACCCAAGAGGAGAGTTCGATCACGACCATCATGACGAATCCAACGACAACGTATACGGTGGAAGTGCTGGTAGAGGATATGGAGTGAGTGGCTCTGCTCTCGGAAGCTCGGGATACGGTAATGGTGGAAGTGCTGGATATGGAGGAAGCCAAGGTGGACGTGGAGATGGTTATGGTAAAGACGGGCGTGGAGGATATGGAAGCGGAGGAGACCGGGGCGTAGGCTATGACAATAGAGGGAGTGTTGGATATGGAAGCGGAGGAGAACGGGGTGTAGGCTATGATAATAGAGGGAGTGTTGGATATGGAAGCGGAAGAGACCGTGATGTAGGCTATGACAATAGAGGGAGTGTTGGATATGGAAGCGGAGGAGATCGCAGTGTAGGCTATGACAATAGAGGGAGTGTTGGATATGGAAGCGGAGGAGACCGAGGTGTAGGCTATGATAATAGAGGGAGTGTTGGATATGGAAGCGGAGGAGATCACGGTGTAGGCTATGACAATAGAGGGAGTGTTGGATATGGAAATGGAGGAAGCGGAGGCTATGGAAGTGAAAAAGGGAATGGATACGGCCAAAGAGGAGACCATGGAGTAGGATATGATAGTAGAGGAAGTGTTGGGTCTGGAAGTGATTATGGAAATTCTCGAGGATATGGCAATGGAAATGGACAAGCTGGTGGTGCCTATGGCAATGGAAATGGCTCAGCTGGAACTGCTTATGGCAGTAGTGGAAGTGCTCATGGAGGAGAACATGACAATAACAAAGGAAATGGAGAGGAAGGAGGTTCTGATGGTGGATACTAAAACCCATTTTAAGGAATTATTAACGTCCCAGTTTCATTATGTGTCAAACAAAAACAATAATAAAGAAATTGGGTTACACAATGTTATATGTTCAATCTACTTTTAATGAATGGAATCAATGCTTTATGGATAAACAAACAAATGTGGATTACATGTGTGGGGAAGATTGTCTTATGCATCTTATACATATTATCAAGGTTTAAATAATACATTGATCATAT

mRNA sequence

ATGGGTATACAAAGAGTTTTGTGCCTTGGCCTTCTTCTCCTTGTGAGTTTAGGCTTAGCTTCCGCAGCTAGAAGCCTTCTAGTTTATGATCCTCCTGCACACCACAATGAGTATGATCGCCCCAACCCAAGAGGAGAGTTCGATCACGACCATCATGACGAATCCAACGACAACGTATACGGTGGAAGTGCTGGTAGAGGATATGGAGTGAGTGGCTCTGCTCTCGGAAGCTCGGGATACGGTAATGGTGGAAGTGCTGGATATGGAGGAAGCCAAGGTGGACGTGGAGATGGTTATGGTAAAGACGGGCGTGGAGGATATGGAAGCGGAGGAGACCGGGGCGTAGGCTATGACAATAGAGGGAGTGTTGGATATGGAAGCGGAGGAGAACGGGGTGTAGGCTATGATAATAGAGGGAGTGTTGGATATGGAAGCGGAAGAGACCGTGATGTAGGCTATGACAATAGAGGGAGTGTTGGATATGGAAGCGGAGGAGATCGCAGTGTAGGCTATGACAATAGAGGGAGTGTTGGATATGGAAGCGGAGGAGACCGAGGTGTAGGCTATGATAATAGAGGGAGTGTTGGATATGGAAGCGGAGGAGATCACGGTGTAGGCTATGACAATAGAGGGAGTGTTGGATATGGAAATGGAGGAAGCGGAGGCTATGGAAGTGAAAAAGGGAATGGATACGGCCAAAGAGGAGACCATGGAGTAGGATATGATAGTAGAGGAAGTGTTGGGTCTGGAAGTGATTATGGAAATTCTCGAGGATATGGCAATGGAAATGGACAAGCTGGTGGTGCCTATGGCAATGGAAATGGCTCAGCTGGAACTGCTTATGGCAGTAGTGGAAGTGCTCATGGAGGAGAACATGACAATAACAAAGGAAATGGAGAGGAAGGAGGTTCTGATGGTGGATACTAAAACCCATTTTAAGGAATTATTAACGTCCCAGTTTCATTATGTGTCAAACAAAAACAATAATAAAGAAATTGGGTTACACAATGTTATATGTTCAATCTACTTTTAATGAATGGAATCAATGCTTTATGGATAAACAAACAAATGTGGATTACATGTGTGGGGAAGATTGTCTTATGCATCTTATACATATTATCAAGGTTTAAATAATACATTGATCATAT

Coding sequence (CDS)

ATGGGTATACAAAGAGTTTTGTGCCTTGGCCTTCTTCTCCTTGTGAGTTTAGGCTTAGCTTCCGCAGCTAGAAGCCTTCTAGTTTATGATCCTCCTGCACACCACAATGAGTATGATCGCCCCAACCCAAGAGGAGAGTTCGATCACGACCATCATGACGAATCCAACGACAACGTATACGGTGGAAGTGCTGGTAGAGGATATGGAGTGAGTGGCTCTGCTCTCGGAAGCTCGGGATACGGTAATGGTGGAAGTGCTGGATATGGAGGAAGCCAAGGTGGACGTGGAGATGGTTATGGTAAAGACGGGCGTGGAGGATATGGAAGCGGAGGAGACCGGGGCGTAGGCTATGACAATAGAGGGAGTGTTGGATATGGAAGCGGAGGAGAACGGGGTGTAGGCTATGATAATAGAGGGAGTGTTGGATATGGAAGCGGAAGAGACCGTGATGTAGGCTATGACAATAGAGGGAGTGTTGGATATGGAAGCGGAGGAGATCGCAGTGTAGGCTATGACAATAGAGGGAGTGTTGGATATGGAAGCGGAGGAGACCGAGGTGTAGGCTATGATAATAGAGGGAGTGTTGGATATGGAAGCGGAGGAGATCACGGTGTAGGCTATGACAATAGAGGGAGTGTTGGATATGGAAATGGAGGAAGCGGAGGCTATGGAAGTGAAAAAGGGAATGGATACGGCCAAAGAGGAGACCATGGAGTAGGATATGATAGTAGAGGAAGTGTTGGGTCTGGAAGTGATTATGGAAATTCTCGAGGATATGGCAATGGAAATGGACAAGCTGGTGGTGCCTATGGCAATGGAAATGGCTCAGCTGGAACTGCTTATGGCAGTAGTGGAAGTGCTCATGGAGGAGAACATGACAATAACAAAGGAAATGGAGAGGAAGGAGGTTCTGATGGTGGATACTAA

Protein sequence

MGIQRVLCLGLLLLVSLGLASAARSLLVYDPPAHHNEYDRPNPRGEFDHDHHDESNDNVYGGSAGRGYGVSGSALGSSGYGNGGSAGYGGSQGGRGDGYGKDGRGGYGSGGDRGVGYDNRGSVGYGSGGERGVGYDNRGSVGYGSGRDRDVGYDNRGSVGYGSGGDRSVGYDNRGSVGYGSGGDRGVGYDNRGSVGYGSGGDHGVGYDNRGSVGYGNGGSGGYGSEKGNGYGQRGDHGVGYDSRGSVGSGSDYGNSRGYGNGNGQAGGAYGNGNGSAGTAYGSSGSAHGGEHDNNKGNGEEGGSDGGY

Homology

[Close]

BLAST of Sed0023217 vs. NCBI nr
Match: XP_022923448.1 (glycine-rich cell wall structural protein 1.8-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 167.5 bits (423), Expect = 1.8e-37
Identity = 163/308 (52.92%), Postives = 178/308 (57.79%), Query Frame = 0


Query: 1   MGIQRVLCLGLLLLVSLGLASAARSLLVYDPPAHHNEYDRPNPRGEFDHDHHDESNDNVY 60
           M I RVLCL  LLLV LGLASAAR+LL YDP   H  YDRPNPR  +D  H DES DN Y
Sbjct: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60

Query: 61  GGSAGRGYGVSGSALGSSGYGNGGSAGYGGSQGGRGDGYGKDGRGGYGSGGDRGVGYDNR 120
           GG +G GYG   SALG SGYG+GG          RG GYG  G   YG G   GV     
Sbjct: 61  GGRSGGGYGDGSSALGGSGYGSGGV---------RGSGYGNGGGNAYGGGVSSGV----- 120

Query: 121 GSVGYGSGGERGVGYDNRGSVGYGSGRDRDVGYDNRGSVGYGSGGDRSVGYDNRGSVGYG 180
           G  GYGSG   G G D+   VGY  GR    GY+N G+ GYG G D          +GYG
Sbjct: 121 GGAGYGSGSRYGGGEDH--GVGYAGGRSG--GYENGGNGGYGQGRDH--------DIGYG 180

Query: 181 SGGDRGVGYDNRGSVGYGSGGDHGVGYDNRGSVGYGNGGSGGYGSEKGNGYGQRGDHGVG 240
           SG     GY+N G+ GYG G DH +GY +R   G GNG   GYG   G G G   D G G
Sbjct: 181 SG-----GYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGNGYGDSHGYGNGGGVDGGYG 240

Query: 241 YDSRGSVGSGSDYGNSRGYGNGNGQAGGAYGNGNGSAGTAYGSSGSAHGGEHDNNKGNGE 300
              RG  G GS  G S G G G G  G A G+G G AG AYG SG AHGGEHDN+KG+GE
Sbjct: 241 ---RGD-GVGSHAGGS-GIGAGGGYGGHAGGSGIG-AGGAYG-SGGAHGGEHDNSKGSGE 270

Query: 301 EGGSDGGY 309
           EGG DGGY
Sbjct: 301 EGGYDGGY 270

[Close]

BLAST of Sed0023217 vs. NCBI nr
Match: XP_022923449.1 (glycine-rich cell wall structural protein 1.8-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 164.5 bits (415), Expect = 1.5e-36
Identity = 160/311 (51.45%), Postives = 174/311 (55.95%), Query Frame = 0


Query: 1   MGIQRVLCLGLLLLVSLGLASAARSLLVYDPPAHHNEYDRPNPRGEFDHDHHDESNDNVY 60
           M I RVLCL  LLLV LGLASAAR+LL YDP   H  YDRPNPR  +D  H DES DN Y
Sbjct: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60

Query: 61  GGSAGRGYGVSGSALGSSGYGNGGSAGYGGSQGGRGDGYGKDGRGGYGSGGDRGVGYDNR 120
           GG +G GYG   SALG SGYG+GG          RG GYG  G   YG G   GV     
Sbjct: 61  GGRSGGGYGDGSSALGGSGYGSGGV---------RGSGYGNGGGNAYGGGVSSGV----- 120

Query: 121 GSVGYGSGGERGVGYDNRGSVGYGSGRDRDVGYDNRGSVGYGSGGDRSVGYDNRGSVGYG 180
           G  GYGSG              YG G D  VGY           G RS GY+N G+ GYG
Sbjct: 121 GGAGYGSGSR------------YGGGEDHGVGY----------AGGRSGGYENGGNGGYG 180

Query: 181 SGGDRGVG---YDNRGSVGYGSGGDHGVGYDNRGSVGYGNGGSGGYGSEKGNGYGQRGDH 240
            G D  +G   Y+N G+ GYG G DH +GY +R   G GNG   GYG   G G G   D 
Sbjct: 181 QGRDHDIGYGSYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGNGYGDSHGYGNGGGVDG 240

Query: 241 GVGYDSRGSVGSGSDYGNSRGYGNGNGQAGGAYGNGNGSAGTAYGSSGSAHGGEHDNNKG 300
           G G   RG  G GS  G S G G G G  G A G+G G AG AYG SG AHGGEHDN+KG
Sbjct: 241 GYG---RGD-GVGSHAGGS-GIGAGGGYGGHAGGSGIG-AGGAYG-SGGAHGGEHDNSKG 268

Query: 301 NGEEGGSDGGY 309
           +GEEGG DGGY
Sbjct: 301 SGEEGGYDGGY 268

[Close]

BLAST of Sed0023217 vs. NCBI nr
Match: XP_023552983.1 (glycine-rich cell wall structural protein 1.8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 162.2 bits (409), Expect = 7.4e-36
Identity = 158/311 (50.80%), Postives = 174/311 (55.95%), Query Frame = 0


Query: 1   MGIQRVLCLGLLLLVSLGLASAARSLLVYDPPAHHNEYDRPNPRGEFDHDHHDESNDNVY 60
           M I RVLCL  LLLV LGLASAAR+LL YDP  HH  YDRPNPR  +D  H DES DNVY
Sbjct: 288 MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTHHYGYDRPNPREGYDSGHRDESYDNVY 347

Query: 61  GGSAGRGYGVSGSALGSSGYGNGGSAGYGGSQGGRGDGYGKDGRGGYGSGGDRGVGYDNR 120
           GG +G GYGV GSALG SGYG+GG          RG GYG  G   YG G   GV     
Sbjct: 348 GGRSGGGYGVGGSALGGSGYGSGGV---------RGSGYGNGGGNAYGGGVSSGV----- 407

Query: 121 GSVGYGSGGERGVGYDNRGSVGYGSGRDRDVGYDNRGSVGYGSGGDRSVGYDNRGSVGYG 180
           G  GYGSG              YG G D  VGY          GG RS GY+N G+ GYG
Sbjct: 408 GGAGYGSGSR------------YGGGEDHGVGY----------GGGRSGGYENGGNGGYG 467

Query: 181 SGGDRGVGYDNRGSVGYGSGGDHGVGYDNRGSVGYGNGG--SGGYGSEKGNGYGQRGDHG 240
            G D  +GY +R   G G+G  +G       S GYGNGG   GGYG         RGD G
Sbjct: 468 QGRDHDIGYGSRNGNGNGNGNGYG------DSHGYGNGGGVDGGYG---------RGD-G 527

Query: 241 VGYDSRGS-VGSGSDYGNSRGYGNGNGQAGGAYGNGNGSAGTAYGSSGSAHGGEHDNNKG 300
           VG  + GS +G+G  YG   G G+G G AGGAYG            SG AHGGEHDN+KG
Sbjct: 528 VGGHAGGSGIGAGGGYGGHAG-GSGIG-AGGAYG------------SGGAHGGEHDNSKG 532

Query: 301 NGEEGGSDGGY 309
           +GEEGG DGGY
Sbjct: 588 SGEEGGYDGGY 532

[Close]

BLAST of Sed0023217 vs. NCBI nr
Match: XP_022923541.1 (glycine-rich cell wall structural protein 1.8-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 161.0 bits (406), Expect = 1.6e-35
Identity = 158/311 (50.80%), Postives = 177/311 (56.91%), Query Frame = 0


Query: 1   MGIQRVLCLGLLLLVSLGLASAARSLLVYDPPAHHNEYDRPNPRGEFDHDHHDESNDNVY 60
           M I RVLCL  LLLV LGLASAAR+LL YDP   H  YDRPNPR  +D  H DES DN Y
Sbjct: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60

Query: 61  GGSAGRGYGVSGSALGSSGYGNGGSAGYGGSQGGRGDGYGKDGRGGYGSGGDRGVGYDNR 120
           GG +G GYG   SALG SGYG+GG          RG GYG  G   YG G + GV     
Sbjct: 61  GGRSGGGYGDGSSALGGSGYGSGGV---------RGSGYGNGGGNAYGGGVNSGV----- 120

Query: 121 GSVGYGSGGERGVGYDNRGSVGYGSGRDRDVGYDNRGSVGYGSGGDRSVGYDNRGSVGYG 180
           G  GYGSG   G G D+   VGY  GR    GY+N G+ GYG G D          +GYG
Sbjct: 121 GGAGYGSGSRYGGGEDH--GVGYAGGRSG--GYENGGNGGYGQGRDH--------DIGYG 180

Query: 181 SGGDRGVGYDNRGSVGYGSGGDHGVGYDNRGSVGYGNGGSGGYGSEKGNGYGQRGDHGVG 240
           SG     GY+N G+ GYG G DH +GY +R     GNG   G G+  GNGYG    +G G
Sbjct: 181 SG-----GYENGGNGGYGQGRDHDIGYGSRN----GNGNGNGNGNGNGNGYGDSHGYGNG 240

Query: 241 YDSRGSVGSGSDYGNSRGYGNGNGQAGGAYGNGNGS---AGTAYGSSGSAHGGEHDNNKG 300
               G  G G   G   G G+G G  GG  G+  GS   AG AYG SG AHGGEHDN+KG
Sbjct: 241 GGVDGGYGRGDGVGGHAG-GSGIGAGGGYGGHAGGSGIGAGGAYG-SGGAHGGEHDNSKG 273

Query: 301 NGEEGGSDGGY 309
           +G EGG DGGY
Sbjct: 301 SG-EGGYDGGY 273

[Close]

BLAST of Sed0023217 vs. NCBI nr
Match: XP_023552980.1 (glycine-rich cell wall structural protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 160.6 bits (405), Expect = 2.1e-35
Identity = 157/311 (50.48%), Postives = 174/311 (55.95%), Query Frame = 0


Query: 1   MGIQRVLCLGLLLLVSLGLASAARSLLVYDPPAHHNEYDRPNPRGEFDHDHHDESNDNVY 60
           M I RVLCL  LLLV LGLASAAR+LL YDP  HH  YDRPNPR  +D  H DES DNVY
Sbjct: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTHHYGYDRPNPREGYDSGHRDESYDNVY 60

Query: 61  GGSAGRGYGVSGSALGSSGYGNGGSAGYGGSQGGRGDGYGKDGRGGYGSGGDRGVGYDNR 120
           GG +G GYGV GSALG SGYG+GG          RG GYG  G   YG G   GV     
Sbjct: 61  GGRSGGGYGVGGSALGGSGYGSGGV---------RGSGYGNGGGNAYGGGVSSGV----- 120

Query: 121 GSVGYGSGGERGVGYDNRGSVGYGSGRDRDVGYDNRGSVGYGSGGDRSVGYDNRGSVGYG 180
           G  GYGSG              YG G D  VGY          GG RS GY+N G+ GYG
Sbjct: 121 GGAGYGSGSR------------YGGGEDHGVGY----------GGGRSGGYENGGNGGYG 180

Query: 181 SGGDRGVGYDNRGSVGYGSGGDHGVGYDNRGSVGYGNGG--SGGYGSEKGNGYGQRGDHG 240
            G D  +GY +R   G G+G  +G       S GYGNGG   GGYG         RGD G
Sbjct: 181 QGRDHDIGYGSRNGNGNGNGNGYG------DSHGYGNGGGVDGGYG---------RGD-G 240

Query: 241 VGYDSRGS-VGSGSDYGNSRGYGNGNGQAGGAYGNGNGSAGTAYGSSGSAHGGEHDNNKG 300
           VG  + GS +G+G  YG   G G+G G AGGAYG+G G            HGGEHDN+KG
Sbjct: 241 VGGHAGGSGIGAGGGYGGHAG-GSGIG-AGGAYGSGGG------------HGGEHDNSKG 245

Query: 301 NGEEGGSDGGY 309
           +GEEGG DGGY
Sbjct: 301 SGEEGGYDGGY 245

[Close]

BLAST of Sed0023217 vs. ExPASy Swiss-Prot
Match: P10496 (Glycine-rich cell wall structural protein 1.8 OS=Phaseolus vulgaris OX=3885 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.5e-10
Identity = 125/318 (39.31%), Postives = 144/318 (45.28%), Query Frame = 0


Query: 3   IQRVLCLGLLLLVSLGLASAARSLLVYDPPAHHNEYDRPNPRGEFDHDHHDESNDNVYGG 62
           I R+  L  L+L++LG+ SA R+LL  D                +   H        YGG
Sbjct: 4   IHRLPSLVFLVLLALGVCSARRALLTLD--------------AGYGLGH---GTGGGYGG 63

Query: 63  SAGR-GYGVSGSALGSSGY-GNGGSAGYGGSQG---GRGDGYGKDGRGGYGSGGDRGVGY 122
           +AG  G G  G + G  GY G  G  GYGG  G   G G GYG D   GYG GG  G G 
Sbjct: 64  AAGSYGGGGGGGSGGGGGYAGEHGVVGYGGGSGGGQGGGVGYGGDQGAGYGGGGGSGGG- 123

Query: 123 DNRGSVGYGSGGER---GVGYDNRGSVGYGSGRDRDVGYDNRGSVGYGSGGDRSVGYDNR 182
              G V YG GGER   G G       GYG+G +  +GY   G  G G GG  + G    
Sbjct: 124 ---GGVAYGGGGERGGYGGGQGGGAGGGYGAGGEHGIGYGGGGGSGAGGGGGYNAGGAQG 183

Query: 183 GSVGYGSGGDRGVGYDNRGSVGYGSGGDHGVGYDNRGSVG----YGNGGSGGYGSEKGNG 242
           G  GYG+GG  G G    G  G G GG  G G    G  G    +G GG GG G   G G
Sbjct: 184 G--GYGTGGGAGGGGGGGGDHGGGYGGGQGAGGGAGGGYGGGGEHGGGGGGGQGGGAGGG 243

Query: 243 YGQRGDHGVGYDSRGSVGSGSDYGNSRGYGNGNGQAGGAYGNGNGSAGTAYGSSGSAHGG 302
           YG  G+HG      G  G G   G   GYG G    GGA G   G AG  YG+     GG
Sbjct: 244 YGAGGEHG------GGAGGGQGGGAGGGYGAGGEHGGGAGGGQGGGAGGGYGA-----GG 287

Query: 303 EHDNNKGNGEEGGSDGGY 309
           EH    G G+ GG+ GGY
Sbjct: 304 EHGGGAGGGQGGGAGGGY 287

[Close]

BLAST of Sed0023217 vs. ExPASy TrEMBL
Match: A0A6J1E9N8 (glycine-rich cell wall structural protein 1.8-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111431141 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 8.5e-38
Identity = 163/308 (52.92%), Postives = 178/308 (57.79%), Query Frame = 0


Query: 1   MGIQRVLCLGLLLLVSLGLASAARSLLVYDPPAHHNEYDRPNPRGEFDHDHHDESNDNVY 60
           M I RVLCL  LLLV LGLASAAR+LL YDP   H  YDRPNPR  +D  H DES DN Y
Sbjct: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60

Query: 61  GGSAGRGYGVSGSALGSSGYGNGGSAGYGGSQGGRGDGYGKDGRGGYGSGGDRGVGYDNR 120
           GG +G GYG   SALG SGYG+GG          RG GYG  G   YG G   GV     
Sbjct: 61  GGRSGGGYGDGSSALGGSGYGSGGV---------RGSGYGNGGGNAYGGGVSSGV----- 120

Query: 121 GSVGYGSGGERGVGYDNRGSVGYGSGRDRDVGYDNRGSVGYGSGGDRSVGYDNRGSVGYG 180
           G  GYGSG   G G D+   VGY  GR    GY+N G+ GYG G D          +GYG
Sbjct: 121 GGAGYGSGSRYGGGEDH--GVGYAGGRSG--GYENGGNGGYGQGRDH--------DIGYG 180

Query: 181 SGGDRGVGYDNRGSVGYGSGGDHGVGYDNRGSVGYGNGGSGGYGSEKGNGYGQRGDHGVG 240
           SG     GY+N G+ GYG G DH +GY +R   G GNG   GYG   G G G   D G G
Sbjct: 181 SG-----GYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGNGYGDSHGYGNGGGVDGGYG 240

Query: 241 YDSRGSVGSGSDYGNSRGYGNGNGQAGGAYGNGNGSAGTAYGSSGSAHGGEHDNNKGNGE 300
              RG  G GS  G S G G G G  G A G+G G AG AYG SG AHGGEHDN+KG+GE
Sbjct: 241 ---RGD-GVGSHAGGS-GIGAGGGYGGHAGGSGIG-AGGAYG-SGGAHGGEHDNSKGSGE 270

Query: 301 EGGSDGGY 309
           EGG DGGY
Sbjct: 301 EGGYDGGY 270

[Close]

BLAST of Sed0023217 vs. ExPASy TrEMBL
Match: A0A6J1E6F7 (glycine-rich cell wall structural protein 1.8-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111431141 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 7.2e-37
Identity = 160/311 (51.45%), Postives = 174/311 (55.95%), Query Frame = 0


Query: 1   MGIQRVLCLGLLLLVSLGLASAARSLLVYDPPAHHNEYDRPNPRGEFDHDHHDESNDNVY 60
           M I RVLCL  LLLV LGLASAAR+LL YDP   H  YDRPNPR  +D  H DES DN Y
Sbjct: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60

Query: 61  GGSAGRGYGVSGSALGSSGYGNGGSAGYGGSQGGRGDGYGKDGRGGYGSGGDRGVGYDNR 120
           GG +G GYG   SALG SGYG+GG          RG GYG  G   YG G   GV     
Sbjct: 61  GGRSGGGYGDGSSALGGSGYGSGGV---------RGSGYGNGGGNAYGGGVSSGV----- 120

Query: 121 GSVGYGSGGERGVGYDNRGSVGYGSGRDRDVGYDNRGSVGYGSGGDRSVGYDNRGSVGYG 180
           G  GYGSG              YG G D  VGY           G RS GY+N G+ GYG
Sbjct: 121 GGAGYGSGSR------------YGGGEDHGVGY----------AGGRSGGYENGGNGGYG 180

Query: 181 SGGDRGVG---YDNRGSVGYGSGGDHGVGYDNRGSVGYGNGGSGGYGSEKGNGYGQRGDH 240
            G D  +G   Y+N G+ GYG G DH +GY +R   G GNG   GYG   G G G   D 
Sbjct: 181 QGRDHDIGYGSYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGNGYGDSHGYGNGGGVDG 240

Query: 241 GVGYDSRGSVGSGSDYGNSRGYGNGNGQAGGAYGNGNGSAGTAYGSSGSAHGGEHDNNKG 300
           G G   RG  G GS  G S G G G G  G A G+G G AG AYG SG AHGGEHDN+KG
Sbjct: 241 GYG---RGD-GVGSHAGGS-GIGAGGGYGGHAGGSGIG-AGGAYG-SGGAHGGEHDNSKG 268

Query: 301 NGEEGGSDGGY 309
           +GEEGG DGGY
Sbjct: 301 SGEEGGYDGGY 268

[Close]

BLAST of Sed0023217 vs. ExPASy TrEMBL
Match: A0A6J1E726 (glycine-rich cell wall structural protein 1.8-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111431202 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 7.9e-36
Identity = 158/311 (50.80%), Postives = 177/311 (56.91%), Query Frame = 0


Query: 1   MGIQRVLCLGLLLLVSLGLASAARSLLVYDPPAHHNEYDRPNPRGEFDHDHHDESNDNVY 60
           M I RVLCL  LLLV LGLASAAR+LL YDP   H  YDRPNPR  +D  H DES DN Y
Sbjct: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60

Query: 61  GGSAGRGYGVSGSALGSSGYGNGGSAGYGGSQGGRGDGYGKDGRGGYGSGGDRGVGYDNR 120
           GG +G GYG   SALG SGYG+GG          RG GYG  G   YG G + GV     
Sbjct: 61  GGRSGGGYGDGSSALGGSGYGSGGV---------RGSGYGNGGGNAYGGGVNSGV----- 120

Query: 121 GSVGYGSGGERGVGYDNRGSVGYGSGRDRDVGYDNRGSVGYGSGGDRSVGYDNRGSVGYG 180
           G  GYGSG   G G D+   VGY  GR    GY+N G+ GYG G D          +GYG
Sbjct: 121 GGAGYGSGSRYGGGEDH--GVGYAGGRSG--GYENGGNGGYGQGRDH--------DIGYG 180

Query: 181 SGGDRGVGYDNRGSVGYGSGGDHGVGYDNRGSVGYGNGGSGGYGSEKGNGYGQRGDHGVG 240
           SG     GY+N G+ GYG G DH +GY +R     GNG   G G+  GNGYG    +G G
Sbjct: 181 SG-----GYENGGNGGYGQGRDHDIGYGSRN----GNGNGNGNGNGNGNGYGDSHGYGNG 240

Query: 241 YDSRGSVGSGSDYGNSRGYGNGNGQAGGAYGNGNGS---AGTAYGSSGSAHGGEHDNNKG 300
               G  G G   G   G G+G G  GG  G+  GS   AG AYG SG AHGGEHDN+KG
Sbjct: 241 GGVDGGYGRGDGVGGHAG-GSGIGAGGGYGGHAGGSGIGAGGAYG-SGGAHGGEHDNSKG 273

Query: 301 NGEEGGSDGGY 309
           +G EGG DGGY
Sbjct: 301 SG-EGGYDGGY 273

[Close]

BLAST of Sed0023217 vs. ExPASy TrEMBL
Match: A0A6J1E6E4 (glycine-rich protein DOT1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111431202 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 6.7e-35
Identity = 155/314 (49.36%), Postives = 173/314 (55.10%), Query Frame = 0


Query: 1   MGIQRVLCLGLLLLVSLGLASAARSLLVYDPPAHHNEYDRPNPRGEFDHDHHDESNDNVY 60
           M I RVLCL  LLLV LGLASAAR+LL YDP   H  YDRPNPR  +D  H DES DN Y
Sbjct: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60

Query: 61  GGSAGRGYGVSGSALGSSGYGNGGSAGYGGSQGGRGDGYGKDGRGGYGSGGDRGVGYDNR 120
           GG +G GYG   SALG SGYG+GG          RG GYG  G   YG G + GV     
Sbjct: 61  GGRSGGGYGDGSSALGGSGYGSGGV---------RGSGYGNGGGNAYGGGVNSGV----- 120

Query: 121 GSVGYGSGGERGVGYDNRGSVGYGSGRDRDVGYDNRGSVGYGSGGDRSVGYDNRGSVGYG 180
           G  GYGSG              YG G D  VGY           G RS GY+N G+ GYG
Sbjct: 121 GGAGYGSGSR------------YGGGEDHGVGY----------AGGRSGGYENGGNGGYG 180

Query: 181 SGGDRGVG---YDNRGSVGYGSGGDHGVGYDNRGSVGYGNGGSGGYGSEKGNGYGQRGDH 240
            G D  +G   Y+N G+ GYG G DH +GY +R     GNG   G G+  GNGYG    +
Sbjct: 181 QGRDHDIGYGSYENGGNGGYGQGRDHDIGYGSRN----GNGNGNGNGNGNGNGYGDSHGY 240

Query: 241 GVGYDSRGSVGSGSDYGNSRGYGNGNGQAGGAYGNGNGS---AGTAYGSSGSAHGGEHDN 300
           G G    G  G G   G   G G+G G  GG  G+  GS   AG AYG SG AHGGEHDN
Sbjct: 241 GNGGGVDGGYGRGDGVGGHAG-GSGIGAGGGYGGHAGGSGIGAGGAYG-SGGAHGGEHDN 271

Query: 301 NKGNGEEGGSDGGY 309
           +KG+G EGG DGGY
Sbjct: 301 SKGSG-EGGYDGGY 271

[Close]

BLAST of Sed0023217 vs. ExPASy TrEMBL
Match: A0A6J1E9X7 (glycine-rich cell wall structural protein 1.8-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111431202 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.0e-34
Identity = 154/311 (49.52%), Postives = 171/311 (54.98%), Query Frame = 0


Query: 1   MGIQRVLCLGLLLLVSLGLASAARSLLVYDPPAHHNEYDRPNPRGEFDHDHHDESNDNVY 60
           M I RVLCL  LLLV LGLASAAR+LL YDP   H  YDRPNPR  +D  H DES DN Y
Sbjct: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60

Query: 61  GGSAGRGYGVSGSALGSSGYGNGGSAGYGGSQGGRGDGYGKDGRGGYGSGGDRGVGYDNR 120
           GG +G GYG   SALG SGYG+GG          RG GYG  G   YG G + GV     
Sbjct: 61  GGRSGGGYGDGSSALGGSGYGSGGV---------RGSGYGNGGGNAYGGGVNSGV----- 120

Query: 121 GSVGYGSGGERGVGYDNRGSVGYGSGRDRDVGYDNRGSVGYGSGGDRSVGYDNRGSVGYG 180
           G  GYGSG              YG G D  VGY           G RS GY+N G+ GYG
Sbjct: 121 GGAGYGSGSR------------YGGGEDHGVGY----------AGGRSGGYENGGNGGYG 180

Query: 181 SGGDRGVGYDNRGSVGYGSGGDHGVGYDNRGSVGYGNGGSGGYGSEKGNGYGQRGDHGVG 240
            G D  +GY + G  GYG G DH +GY +R     GNG   G G+  GNGYG    +G G
Sbjct: 181 QGRDHDIGYGSNG--GYGQGRDHDIGYGSRN----GNGNGNGNGNGNGNGYGDSHGYGNG 240

Query: 241 YDSRGSVGSGSDYGNSRGYGNGNGQAGGAYGNGNGS---AGTAYGSSGSAHGGEHDNNKG 300
               G  G G   G   G G+G G  GG  G+  GS   AG AYG SG AHGGEHDN+KG
Sbjct: 241 GGVDGGYGRGDGVGGHAG-GSGIGAGGGYGGHAGGSGIGAGGAYG-SGGAHGGEHDNSKG 266

Query: 301 NGEEGGSDGGY 309
           +G EGG DGGY
Sbjct: 301 SG-EGGYDGGY 266

[Close]

BLAST of Sed0023217 vs. TAIR 10
Match: AT5G46730.1 (glycine-rich protein )

HSP 1 Score: 43.5 bits (101), Expect = 3.6e-04
Identity = 101/248 (40.73%), Postives = 112/248 (45.16%), Query Frame = 0


Query: 60  YGGSAGRGYGVSGSALGSSGYGNGGSAGY--GGSQGGRGDGYGKDGRGGYGSGGDRGVGY 119
           YGG +G GYG  GS  G+ G G GG+ GY  GG  G  G G G    GGY SG   G G 
Sbjct: 53  YGGESGGGYG-GGSGEGAGG-GYGGAEGYASGGGSGHGGGGGGAASSGGYASGAGEGGGG 112

Query: 120 DNRGSVGYGSGGERGVGYDNRGSVGYGSGRDRDVGYDNRGSVGYGSGGDRSVGYDNRGSV 179
              G+ G G  G  G G    G   YG+G +   GY N    G G+G     G    G  
Sbjct: 113 GYGGAAG-GHAGGGGGGSGGGGGSAYGAGGEHASGYGNGAGEGGGAGASGYGGGAYGGGG 172

Query: 180 GYGSGGDRGVGYDNRGSVGY--GSGGDHGVGYDNRGSVGYGNGGSGGYGSEKGNGYGQRG 239
           G+G GG  G      G  GY  G GG  G G  + G+ GYG GG GG G   G  YG  G
Sbjct: 173 GHGGGGGGGSAGGAHGGSGYGGGEGGGAGGGGSHGGAGGYGGGGGGGSGG--GGAYGGGG 232

Query: 240 DHGVGYDSRGSVGSGSDYGNSRGYGNGNGQAGGAYGNGNGSAGTAYGSSGSAHGGEHDNN 299
            HG GY S G  G G   G + GYG G    GG  G G    G   G SG  HGG     
Sbjct: 233 AHGGGYGSGGGEGGGYGGGAAGGYGGG---GGGGEGGGGSYGGEHGGGSGGGHGG----- 286

Query: 300 KGNGEEGG 304
            G G  GG
Sbjct: 293 -GGGHGGG 286

The following BLAST results are available for this feature:

BLAST of Sed0023217 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022923448.1	1.8e-37	52.92	glycine-rich cell wall structural protein 1.8-like isoform X1 [Cucurbita moschat...	[more]
XP_022923449.1	1.5e-36	51.45	glycine-rich cell wall structural protein 1.8-like isoform X2 [Cucurbita moschat...	[more]
XP_023552983.1	7.4e-36	50.80	glycine-rich cell wall structural protein 1.8-like [Cucurbita pepo subsp. pepo]	[more]
XP_022923541.1	1.6e-35	50.80	glycine-rich cell wall structural protein 1.8-like isoform X1 [Cucurbita moschat...	[more]
XP_023552980.1	2.1e-35	50.48	glycine-rich cell wall structural protein 2-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0023217 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10496	2.5e-10	39.31	Glycine-rich cell wall structural protein 1.8 OS=Phaseolus vulgaris OX=3885 PE=2...	[more]

BLAST of Sed0023217 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E9N8	8.5e-38	52.92	glycine-rich cell wall structural protein 1.8-like isoform X1 OS=Cucurbita mosch...	[more]
A0A6J1E6F7	7.2e-37	51.45	glycine-rich cell wall structural protein 1.8-like isoform X2 OS=Cucurbita mosch...	[more]
A0A6J1E726	7.9e-36	50.80	glycine-rich cell wall structural protein 1.8-like isoform X1 OS=Cucurbita mosch...	[more]
A0A6J1E6E4	6.7e-35	49.36	glycine-rich protein DOT1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1E9X7	2.0e-34	49.52	glycine-rich cell wall structural protein 1.8-like isoform X3 OS=Cucurbita mosch...	[more]

BLAST of Sed0023217 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46730.1	3.6e-04	40.73	glycine-rich protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..187
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 225..308
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 248..291
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0023217.1	Sed0023217.1	mRNA