Sed0023040 (gene) Chayote v1

Overview
NameSed0023040
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG04: 2410680 .. 2411108 (+)
RNA-Seq ExpressionSed0023040
SyntenySed0023040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTATCTCTCTGTTTCTTCTAACACCGCCACCGCCACCCTTCTTCCACCGCCGCACCGCCGTCGTTTCCCCCAAATTCAGGTCAATTTCAGCCATTTCCCCACCACAGCTCCGCCGTAAGGGGGCACCAAGATGTGTAAGTCAGGGTGGCTGGGAGGGCTCTCCGGCGGAGTTGGAGAGAGAAGAGTGGATGAAGCTAGGGAGGCTGGAGGCCAAGTGCGGCGGCGGCGAACAGGGAGTGGTGGAGATGCTCGAGTGTTTGGAAAGAGAAGCCATTATGGGGGAAGATGAAGGTAGAGACCCTAATGATTACAATAGAAGGGCTAAGATTTTCAGTACCAGTTCTAGAGTTTTTCAAGCTCTCAAACAACAACATTCTCAAGATGAACATGAAGAAGAAGACAGAGAGGAAAAAGAACAAGGATGA

mRNA sequence

ATGCCTATCTCTCTGTTTCTTCTAACACCGCCACCGCCACCCTTCTTCCACCGCCGCACCGCCGTCGTTTCCCCCAAATTCAGGTCAATTTCAGCCATTTCCCCACCACAGCTCCGCCGTAAGGGGGCACCAAGATGTGTAAGTCAGGGTGGCTGGGAGGGCTCTCCGGCGGAGTTGGAGAGAGAAGAGTGGATGAAGCTAGGGAGGCTGGAGGCCAAGTGCGGCGGCGGCGAACAGGGAGTGGTGGAGATGCTCGAGTGTTTGGAAAGAGAAGCCATTATGGGGGAAGATGAAGGTAGAGACCCTAATGATTACAATAGAAGGGCTAAGATTTTCAGTACCAGTTCTAGAGTTTTTCAAGCTCTCAAACAACAACATTCTCAAGATGAACATGAAGAAGAAGACAGAGAGGAAAAAGAACAAGGATGA

Coding sequence (CDS)

ATGCCTATCTCTCTGTTTCTTCTAACACCGCCACCGCCACCCTTCTTCCACCGCCGCACCGCCGTCGTTTCCCCCAAATTCAGGTCAATTTCAGCCATTTCCCCACCACAGCTCCGCCGTAAGGGGGCACCAAGATGTGTAAGTCAGGGTGGCTGGGAGGGCTCTCCGGCGGAGTTGGAGAGAGAAGAGTGGATGAAGCTAGGGAGGCTGGAGGCCAAGTGCGGCGGCGGCGAACAGGGAGTGGTGGAGATGCTCGAGTGTTTGGAAAGAGAAGCCATTATGGGGGAAGATGAAGGTAGAGACCCTAATGATTACAATAGAAGGGCTAAGATTTTCAGTACCAGTTCTAGAGTTTTTCAAGCTCTCAAACAACAACATTCTCAAGATGAACATGAAGAAGAAGACAGAGAGGAAAAAGAACAAGGATGA

Protein sequence

MPISLFLLTPPPPPFFHRRTAVVSPKFRSISAISPPQLRRKGAPRCVSQGGWEGSPAELEREEWMKLGRLEAKCGGGEQGVVEMLECLEREAIMGEDEGRDPNDYNRRAKIFSTSSRVFQALKQQHSQDEHEEEDREEKEQG
Homology
BLAST of Sed0023040 vs. NCBI nr
Match: XP_022942933.1 (uncharacterized protein LOC111447817 [Cucurbita moschata] >KAG6600868.1 hypothetical protein SDJN03_06101, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031503.1 hypothetical protein SDJN02_05543, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 179.9 bits (455), Expect = 1.6e-41
Identity = 94/126 (74.60%), Postives = 102/126 (80.95%), Query Frame = 0

Query: 3   ISLFLLTPPP-PPFFHRRTAVVSPKFRSISAISPPQLRRK---GAPRCVSQGGWEGSPAE 62
           +S  L+TPPP PPFFHR + VV  K R ISAISP  L R+    APRCVSQGGW GS AE
Sbjct: 4   VSASLITPPPSPPFFHRSSTVVFHKLRPISAISPSWLCRRVAAAAPRCVSQGGWGGSVAE 63

Query: 63  LEREEWMKLGRLEAKCGGGEQGVVEMLECLEREAIMGEDEGRDPNDYNRRAKIFSTSSRV 122
            E EEW+KLGRLE KCGGG +GVVE+LECLEREAIMGEDEGR+P DYNRRAKIFSTSS V
Sbjct: 64  PEIEEWLKLGRLEEKCGGGGKGVVELLECLEREAIMGEDEGREPTDYNRRAKIFSTSSEV 123

Query: 123 FQALKQ 125
           FQALKQ
Sbjct: 124 FQALKQ 129

BLAST of Sed0023040 vs. NCBI nr
Match: XP_022941969.1 (uncharacterized protein LOC111447176 [Cucurbita moschata])

HSP 1 Score: 178.3 bits (451), Expect = 4.6e-41
Identity = 97/135 (71.85%), Postives = 109/135 (80.74%), Query Frame = 0

Query: 14  PFFHRRTAVVSPKFRSISAISPPQLRRK-GAPRCVSQGGWEGSPAELER------EEWMK 73
           PFFHR +AVV PKFR +S +SPP LRR+  APRCVSQGGW  S AELER      EEW+K
Sbjct: 5   PFFHRPSAVVFPKFRPVSTVSPPWLRRQAAAPRCVSQGGWGSSVAELERELSVEGEEWLK 64

Query: 74  LGRLEAKCGGGEQGVVEMLECLEREAIMGEDEGRDPNDYNRRAKIFSTSSRVFQALKQQH 133
           LGRLE KCG G +G+VE+LE LEREAIMGEDEGRDP DY+RRAKIFSTSSRVFQALK QH
Sbjct: 65  LGRLEEKCGSGGKGMVELLESLEREAIMGEDEGRDPTDYHRRAKIFSTSSRVFQALK-QH 124

Query: 134 SQDEHEEEDREEKEQ 142
           S DE EE +RE K++
Sbjct: 125 SDDESEERERERKKK 138

BLAST of Sed0023040 vs. NCBI nr
Match: XP_023541783.1 (uncharacterized protein LOC111801831 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 177.6 bits (449), Expect = 7.8e-41
Identity = 96/135 (71.11%), Postives = 110/135 (81.48%), Query Frame = 0

Query: 14  PFFHRRTAVVSPKFRSISAISPPQLRRKG-APRCVSQGGWEGSPAELER------EEWMK 73
           PFFHR +AVV PKFR +S +SPP LRR+G APRCVSQGGW  S AELER      EEW+K
Sbjct: 5   PFFHRPSAVVFPKFRPVSTVSPPWLRRQGAAPRCVSQGGWGSSVAELEREFSVEGEEWLK 64

Query: 74  LGRLEAKCGGGEQGVVEMLECLEREAIMGEDEGRDPNDYNRRAKIFSTSSRVFQALKQQH 133
           LGRLE KCG G +G+VE+LE LEREAIMGEDEGRDP +Y+RRAKIFSTSSRVFQALK +H
Sbjct: 65  LGRLEEKCGSGGKGMVELLESLEREAIMGEDEGRDPTNYHRRAKIFSTSSRVFQALK-EH 124

Query: 134 SQDEHEEEDREEKEQ 142
           S DE EE +RE K++
Sbjct: 125 SDDESEERERERKKK 138

BLAST of Sed0023040 vs. NCBI nr
Match: XP_022988679.1 (uncharacterized protein LOC111485933 [Cucurbita maxima])

HSP 1 Score: 176.0 bits (445), Expect = 2.3e-40
Identity = 94/136 (69.12%), Postives = 105/136 (77.21%), Query Frame = 0

Query: 3   ISLFLLTPPP-PPFFHRRTAVVSPKFRSISAISPPQLRRK---GAPRCVSQGGWEGSPAE 62
           +S  L+ PPP P FFHR + VV PK R ISAISPP   R+    APRCVSQGGW GS AE
Sbjct: 4   VSASLIIPPPSPSFFHRSSTVVFPKIRPISAISPPWFCRRVAAAAPRCVSQGGWGGSVAE 63

Query: 63  LEREEWMKLGRLEAKCGGGEQGVVEMLECLEREAIMGEDEGRDPNDYNRRAKIFSTSSRV 122
            E EEW+KLGRL+ KCGGG +GVVE+LECLEREAIMGEDEGR+P DYNRRAKIFSTSS V
Sbjct: 64  QEIEEWLKLGRLDEKCGGGGKGVVELLECLEREAIMGEDEGREPTDYNRRAKIFSTSSEV 123

Query: 123 FQALKQQH--SQDEHE 133
           FQALKQ    + D H+
Sbjct: 124 FQALKQHSDAAPDPHQ 139

BLAST of Sed0023040 vs. NCBI nr
Match: XP_023547061.1 (uncharacterized protein LOC111805978 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 174.1 bits (440), Expect = 8.6e-40
Identity = 91/131 (69.47%), Postives = 101/131 (77.10%), Query Frame = 0

Query: 7   LLTPPPPPFFHRRTAVVSPKFRSISAISPPQLRRK---GAPRCVSQGGWEGSPAELEREE 66
           ++ PP PPF HR + V  PK R ISAISPP   R+    APRCVSQGGW GS AE E EE
Sbjct: 64  IIPPPSPPFLHRSSTVGFPKLRPISAISPPWFCRRVAAAAPRCVSQGGWGGSVAEPEIEE 123

Query: 67  WMKLGRLEAKCGGGEQGVVEMLECLEREAIMGEDEGRDPNDYNRRAKIFSTSSRVFQALK 126
           W+KLGRLE KCGGG +GVVE+LECLEREAIMGEDEGR+P DYNRRAKIFSTSS VFQALK
Sbjct: 124 WLKLGRLEEKCGGGGKGVVELLECLEREAIMGEDEGREPTDYNRRAKIFSTSSEVFQALK 183

Query: 127 QQH--SQDEHE 133
           Q    + D H+
Sbjct: 184 QHSDAAPDPHQ 194

BLAST of Sed0023040 vs. ExPASy TrEMBL
Match: A0A6J1FW01 (uncharacterized protein LOC111447817 OS=Cucurbita moschata OX=3662 GN=LOC111447817 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 7.6e-42
Identity = 94/126 (74.60%), Postives = 102/126 (80.95%), Query Frame = 0

Query: 3   ISLFLLTPPP-PPFFHRRTAVVSPKFRSISAISPPQLRRK---GAPRCVSQGGWEGSPAE 62
           +S  L+TPPP PPFFHR + VV  K R ISAISP  L R+    APRCVSQGGW GS AE
Sbjct: 4   VSASLITPPPSPPFFHRSSTVVFHKLRPISAISPSWLCRRVAAAAPRCVSQGGWGGSVAE 63

Query: 63  LEREEWMKLGRLEAKCGGGEQGVVEMLECLEREAIMGEDEGRDPNDYNRRAKIFSTSSRV 122
            E EEW+KLGRLE KCGGG +GVVE+LECLEREAIMGEDEGR+P DYNRRAKIFSTSS V
Sbjct: 64  PEIEEWLKLGRLEEKCGGGGKGVVELLECLEREAIMGEDEGREPTDYNRRAKIFSTSSEV 123

Query: 123 FQALKQ 125
           FQALKQ
Sbjct: 124 FQALKQ 129

BLAST of Sed0023040 vs. ExPASy TrEMBL
Match: A0A6J1FPZ7 (uncharacterized protein LOC111447176 OS=Cucurbita moschata OX=3662 GN=LOC111447176 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 2.2e-41
Identity = 97/135 (71.85%), Postives = 109/135 (80.74%), Query Frame = 0

Query: 14  PFFHRRTAVVSPKFRSISAISPPQLRRK-GAPRCVSQGGWEGSPAELER------EEWMK 73
           PFFHR +AVV PKFR +S +SPP LRR+  APRCVSQGGW  S AELER      EEW+K
Sbjct: 5   PFFHRPSAVVFPKFRPVSTVSPPWLRRQAAAPRCVSQGGWGSSVAELERELSVEGEEWLK 64

Query: 74  LGRLEAKCGGGEQGVVEMLECLEREAIMGEDEGRDPNDYNRRAKIFSTSSRVFQALKQQH 133
           LGRLE KCG G +G+VE+LE LEREAIMGEDEGRDP DY+RRAKIFSTSSRVFQALK QH
Sbjct: 65  LGRLEEKCGSGGKGMVELLESLEREAIMGEDEGRDPTDYHRRAKIFSTSSRVFQALK-QH 124

Query: 134 SQDEHEEEDREEKEQ 142
           S DE EE +RE K++
Sbjct: 125 SDDESEERERERKKK 138

BLAST of Sed0023040 vs. ExPASy TrEMBL
Match: A0A6J1JM89 (uncharacterized protein LOC111485933 OS=Cucurbita maxima OX=3661 GN=LOC111485933 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.1e-40
Identity = 94/136 (69.12%), Postives = 105/136 (77.21%), Query Frame = 0

Query: 3   ISLFLLTPPP-PPFFHRRTAVVSPKFRSISAISPPQLRRK---GAPRCVSQGGWEGSPAE 62
           +S  L+ PPP P FFHR + VV PK R ISAISPP   R+    APRCVSQGGW GS AE
Sbjct: 4   VSASLIIPPPSPSFFHRSSTVVFPKIRPISAISPPWFCRRVAAAAPRCVSQGGWGGSVAE 63

Query: 63  LEREEWMKLGRLEAKCGGGEQGVVEMLECLEREAIMGEDEGRDPNDYNRRAKIFSTSSRV 122
            E EEW+KLGRL+ KCGGG +GVVE+LECLEREAIMGEDEGR+P DYNRRAKIFSTSS V
Sbjct: 64  QEIEEWLKLGRLDEKCGGGGKGVVELLECLEREAIMGEDEGREPTDYNRRAKIFSTSSEV 123

Query: 123 FQALKQQH--SQDEHE 133
           FQALKQ    + D H+
Sbjct: 124 FQALKQHSDAAPDPHQ 139

BLAST of Sed0023040 vs. ExPASy TrEMBL
Match: A0A6J1D0H7 (uncharacterized protein LOC111015926 OS=Momordica charantia OX=3673 GN=LOC111015926 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 2.5e-37
Identity = 93/130 (71.54%), Postives = 102/130 (78.46%), Query Frame = 0

Query: 4   SLFLLTPPPPPFFHRRTAVVSPKFRSISAISPPQLRRKGAPRCVSQGGWEGSPAELER-- 63
           S+F L PPPPP  HR +AV   KFR  SAISP   RR  A RCVSQGGW GS AELER  
Sbjct: 5   SVFQLRPPPPPSSHRPSAV---KFRPTSAISPAWRRRGTASRCVSQGGW-GSGAELEREV 64

Query: 64  ----EEWMKLGRLEAKCGGGEQGVVEMLECLEREAIMGEDEGRDPNDYNRRAKIFSTSSR 123
               EEW+KLGRL+ KCGGG +GVVE+LECLE EAIMGEDEGRDP DY+RRAKIFSTSS+
Sbjct: 65  AAEGEEWLKLGRLKEKCGGG-KGVVELLECLEMEAIMGEDEGRDPIDYDRRAKIFSTSSK 124

Query: 124 VFQALKQQHS 128
           VFQALKQQ+S
Sbjct: 125 VFQALKQQNS 129

BLAST of Sed0023040 vs. ExPASy TrEMBL
Match: A0A0A0KQQ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G223100 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.4e-35
Identity = 81/131 (61.83%), Postives = 95/131 (72.52%), Query Frame = 0

Query: 1   MPISLFLLTPPPPPFFHRRTAVVSPKFRSISAISPPQLRRKGA-----PRCVSQGGWEGS 60
           M +S  L++PPPPP  HR +    P  R   ++S P L  + A     PRCVSQGGW  S
Sbjct: 1   MQLSASLISPPPPPLLHRPSTAFFPNLRPTPSLSSPWLCHRPAEAGAEPRCVSQGGWGSS 60

Query: 61  --PAELEREEWMKLGRLEAKCGGGEQGVVEMLECLEREAIMGEDEGRDPNDYNRRAKIFS 120
               E++ EEW+KLGRLE KCGGG +G+VE+LECLE+EAIMGEDEGRDP DYNRRAKIFS
Sbjct: 61  VGVGEVDIEEWLKLGRLEEKCGGGGKGIVELLECLEKEAIMGEDEGRDPTDYNRRAKIFS 120

Query: 121 TSSRVFQALKQ 125
           TSS VFQALKQ
Sbjct: 121 TSSEVFQALKQ 131

BLAST of Sed0023040 vs. TAIR 10
Match: AT5G05220.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 80.9 bits (198), Expect = 9.3e-16
Identity = 44/88 (50.00%), Postives = 58/88 (65.91%), Query Frame = 0

Query: 43  APRCVSQGG-WEGSPAELEREEWMKLGRLEAKCGGG-EQGVVEMLECLEREAIMGEDEGR 102
           A RCV+ G  +  +   +  EE  +L +    CGG   +GV E+LECLE+EAIMG D+GR
Sbjct: 46  AARCVASGSDYAAAMEPITPEEEEELTQRRGICGGEVNRGVWELLECLEKEAIMGNDDGR 105

Query: 103 DPNDYNRRAKIFSTSSRVFQALKQQHSQ 129
           DP DYNRRAKIF  SS++F+ L +Q  Q
Sbjct: 106 DPRDYNRRAKIFDKSSKIFKNLNEQRDQ 133

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022942933.11.6e-4174.60uncharacterized protein LOC111447817 [Cucurbita moschata] >KAG6600868.1 hypothet... [more]
XP_022941969.14.6e-4171.85uncharacterized protein LOC111447176 [Cucurbita moschata][more]
XP_023541783.17.8e-4171.11uncharacterized protein LOC111801831 [Cucurbita pepo subsp. pepo][more]
XP_022988679.12.3e-4069.12uncharacterized protein LOC111485933 [Cucurbita maxima][more]
XP_023547061.18.6e-4069.47uncharacterized protein LOC111805978 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1FW017.6e-4274.60uncharacterized protein LOC111447817 OS=Cucurbita moschata OX=3662 GN=LOC1114478... [more]
A0A6J1FPZ72.2e-4171.85uncharacterized protein LOC111447176 OS=Cucurbita moschata OX=3662 GN=LOC1114471... [more]
A0A6J1JM891.1e-4069.12uncharacterized protein LOC111485933 OS=Cucurbita maxima OX=3661 GN=LOC111485933... [more]
A0A6J1D0H72.5e-3771.54uncharacterized protein LOC111015926 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
A0A0A0KQQ41.4e-3561.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G223100 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G05220.19.3e-1650.00unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 116..142
NoneNo IPR availablePANTHERPTHR37758OS03G0334300 PROTEINcoord: 14..134

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0023040.1Sed0023040.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009507 chloroplast