Sed0022961 (gene) Chayote v1

Overview
NameSed0022961
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG08: 39623698 .. 39624198 (+)
RNA-Seq ExpressionSed0022961
SyntenySed0022961
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCTCACAGTGCCTAAAATCTCTTCTTTTACACATTTTCTGAACTCTGAACCCTCACCCTTCCCTTCTCTTTTCCTACTTGTTCTCATCTTCACCTTCCATGTCCCGACATGTCGTTTCTTCTCTTACTTCCTTCTTCCAAGGCCTTACTACAATTGTGCTGGCCATGGTAAGAGCCTCTGCTATCCCATTGCAATATCCCATCCCAAAGGATTGTTTTGTGGTGGTTGGGCTTTACGAGCGGCACCAATCGCCTTACTTGTGGCGGTGAGTTGGTTGACGGAGGAGGACTCGGCAGGAGGTGCTGCTGGGAACTGGGGGTCTAGAGGCTGCCGTGTTCCGACCATTTCGGTGCACGGAATGAGGGAAAGCAAGGCAGAGGCTGGAGAAATGGGTGGCTGTACTCCTTGGATTCTAGTGGGAATGATTCTGCTCCTATTCAGTATGGCTCAACGCCAAGCTCTCATTCAGCATTGCTTGTTCGTTAGAAGTATGTGA

mRNA sequence

ATGATTCTCACAGTGCCTAAAATCTCTTCTTTTACACATTTTCTGAACTCTGAACCCTCACCCTTCCCTTCTCTTTTCCTACTTGTTCTCATCTTCACCTTCCATGTCCCGACATGTCGTTTCTTCTCTTACTTCCTTCTTCCAAGGCCTTACTACAATTGTGCTGGCCATGGTAAGAGCCTCTGCTATCCCATTGCAATATCCCATCCCAAAGGATTGTTTTGTGGTGGTTGGGCTTTACGAGCGGCACCAATCGCCTTACTTGTGGCGGTGAGTTGGTTGACGGAGGAGGACTCGGCAGGAGGTGCTGCTGGGAACTGGGGGTCTAGAGGCTGCCGTGTTCCGACCATTTCGGTGCACGGAATGAGGGAAAGCAAGGCAGAGGCTGGAGAAATGGGTGGCTGTACTCCTTGGATTCTAGTGGGAATGATTCTGCTCCTATTCAGTATGGCTCAACGCCAAGCTCTCATTCAGCATTGCTTGTTCGTTAGAAGTATGTGA

Coding sequence (CDS)

ATGATTCTCACAGTGCCTAAAATCTCTTCTTTTACACATTTTCTGAACTCTGAACCCTCACCCTTCCCTTCTCTTTTCCTACTTGTTCTCATCTTCACCTTCCATGTCCCGACATGTCGTTTCTTCTCTTACTTCCTTCTTCCAAGGCCTTACTACAATTGTGCTGGCCATGGTAAGAGCCTCTGCTATCCCATTGCAATATCCCATCCCAAAGGATTGTTTTGTGGTGGTTGGGCTTTACGAGCGGCACCAATCGCCTTACTTGTGGCGGTGAGTTGGTTGACGGAGGAGGACTCGGCAGGAGGTGCTGCTGGGAACTGGGGGTCTAGAGGCTGCCGTGTTCCGACCATTTCGGTGCACGGAATGAGGGAAAGCAAGGCAGAGGCTGGAGAAATGGGTGGCTGTACTCCTTGGATTCTAGTGGGAATGATTCTGCTCCTATTCAGTATGGCTCAACGCCAAGCTCTCATTCAGCATTGCTTGTTCGTTAGAAGTATGTGA

Protein sequence

MILTVPKISSFTHFLNSEPSPFPSLFLLVLIFTFHVPTCRFFSYFLLPRPYYNCAGHGKSLCYPIAISHPKGLFCGGWALRAAPIALLVAVSWLTEEDSAGGAAGNWGSRGCRVPTISVHGMRESKAEAGEMGGCTPWILVGMILLLFSMAQRQALIQHCLFVRSM
Homology
BLAST of Sed0022961 vs. NCBI nr
Match: KAG6573437.1 (hypothetical protein SDJN03_27324, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 224.2 bits (570), Expect = 8.5e-55
Identity = 113/165 (68.48%), Postives = 130/165 (78.79%), Query Frame = 0

Query: 1   MILTVPKISSFTHFLNSEPSPFPSLFLLVLIFTFHVPTCRFFSYFLLPRP--YYNCAGHG 60
           MI  +PK+SS TH L S+PSPFPSL LL+LIFT H+PTCRFFSYFL   P  YY+CAG  
Sbjct: 1   MIPIMPKLSSLTHSLTSDPSPFPSLLLLLLIFTLHIPTCRFFSYFLSASPSLYYHCAGRS 60

Query: 61  KSLCYPIAISHPKGLFCGGWALRAAPIALLVAVSWLTEEDSAGGAAGNWGSRGCRVPTIS 120
             LC P+A+S PK L CGGW+LR APIALLV VSWLTE+D+ G AA NWGSR C VPTI 
Sbjct: 61  NWLCNPMAMSSPKRLPCGGWSLRVAPIALLVVVSWLTEKDAEGVAARNWGSRCCHVPTIL 120

Query: 121 VHGMRESKAEAGEMGGCTPWILVGMILLLFSMAQRQALIQHCLFV 164
              MR+ + EA  +GGCTPW+LVGMILLLF+MAQRQALI+HCLFV
Sbjct: 121 --DMRKHETEAEGIGGCTPWVLVGMILLLFNMAQRQALIRHCLFV 163

BLAST of Sed0022961 vs. NCBI nr
Match: KAE8653331.1 (hypothetical protein Csa_023242 [Cucumis sativus])

HSP 1 Score: 219.5 bits (558), Expect = 2.1e-53
Identity = 115/169 (68.05%), Postives = 132/169 (78.11%), Query Frame = 0

Query: 1   MILTVPKISSFTHFLNSEPSPFPSLFLLVLIFTFHVPTCRFFSYF---LLPRPYYNCAGH 60
           MI  + K+SSFTHFL S+PSPFPSL LL+LIFTFH+  CRFFSY    LLP  YYNC G+
Sbjct: 1   MIPIMQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGN 60

Query: 61  GKSLCYPIAISHPKGLFCGGWALRAAPIALLVAVSWLTEEDSAGGAAGNWGSRGCRVPTI 120
            K LC PI IS P+ L  GGWALRAAPIALLV VSWL++++SAG AA  W S+G RV TI
Sbjct: 61  HKILCNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTI 120

Query: 121 SVHGMRESKAEAGEMGGCTPWILVGMILLLFSMAQRQALIQHCLFVRSM 167
           S H     KAE  E+GGCTPW+LVGMI+LLF+MAQRQALI+HCLFVRSM
Sbjct: 121 SEH-----KAEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFVRSM 164

BLAST of Sed0022961 vs. NCBI nr
Match: KAA0043344.1 (hypothetical protein E6C27_scaffold110G002580 [Cucumis melo var. makuwa] >TYK02674.1 hypothetical protein E5676_scaffold1734G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 216.5 bits (550), Expect = 1.8e-52
Identity = 111/169 (65.68%), Postives = 131/169 (77.51%), Query Frame = 0

Query: 1   MILTVPKISSFTHFLNSEPSPFPSLFLLVLIFTFHVPTCRFFSYF---LLPRPYYNCAGH 60
           MI  + K+ SFT+FL S+PSPFPSL L++LIFTFH+P CRFFSY     LP  YYNC G+
Sbjct: 1   MIPMMQKVYSFTNFLTSDPSPFPSLLLILLIFTFHIPKCRFFSYHHFPWLPLFYYNCVGN 60

Query: 61  GKSLCYPIAISHPKGLFCGGWALRAAPIALLVAVSWLTEEDSAGGAAGNWGSRGCRVPTI 120
            K LC PI  S P+ L  GGWALRAAPIALLV VSWL++++SAG AA  WGS+GC V TI
Sbjct: 61  HKILCNPIPTSSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWGSQGCHVSTI 120

Query: 121 SVHGMRESKAEAGEMGGCTPWILVGMILLLFSMAQRQALIQHCLFVRSM 167
           S H     KAE  E+GGCTPW+LVG+I+LLF+MAQRQALI+HCLFVRSM
Sbjct: 121 SEH-----KAEDEEIGGCTPWVLVGIIVLLFNMAQRQALIRHCLFVRSM 164

BLAST of Sed0022961 vs. ExPASy TrEMBL
Match: A0A0A0LW23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G554550 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.9e-53
Identity = 113/163 (69.33%), Postives = 129/163 (79.14%), Query Frame = 0

Query: 7   KISSFTHFLNSEPSPFPSLFLLVLIFTFHVPTCRFFSYF---LLPRPYYNCAGHGKSLCY 66
           K+SSFTHFL S+PSPFPSL LL+LIFTFH+  CRFFSY    LLP  YYNC G+ K LC 
Sbjct: 3   KVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGNHKILCN 62

Query: 67  PIAISHPKGLFCGGWALRAAPIALLVAVSWLTEEDSAGGAAGNWGSRGCRVPTISVHGMR 126
           PI IS P+ L  GGWALRAAPIALLV VSWL++++SAG AA  W S+G RV TIS H   
Sbjct: 63  PIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTISEH--- 122

Query: 127 ESKAEAGEMGGCTPWILVGMILLLFSMAQRQALIQHCLFVRSM 167
             KAE  E+GGCTPW+LVGMI+LLF+MAQRQALI+HCLFVRSM
Sbjct: 123 --KAEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFVRSM 160

BLAST of Sed0022961 vs. ExPASy TrEMBL
Match: A0A5A7TJ52 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1734G00210 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 8.6e-53
Identity = 111/169 (65.68%), Postives = 131/169 (77.51%), Query Frame = 0

Query: 1   MILTVPKISSFTHFLNSEPSPFPSLFLLVLIFTFHVPTCRFFSYF---LLPRPYYNCAGH 60
           MI  + K+ SFT+FL S+PSPFPSL L++LIFTFH+P CRFFSY     LP  YYNC G+
Sbjct: 1   MIPMMQKVYSFTNFLTSDPSPFPSLLLILLIFTFHIPKCRFFSYHHFPWLPLFYYNCVGN 60

Query: 61  GKSLCYPIAISHPKGLFCGGWALRAAPIALLVAVSWLTEEDSAGGAAGNWGSRGCRVPTI 120
            K LC PI  S P+ L  GGWALRAAPIALLV VSWL++++SAG AA  WGS+GC V TI
Sbjct: 61  HKILCNPIPTSSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWGSQGCHVSTI 120

Query: 121 SVHGMRESKAEAGEMGGCTPWILVGMILLLFSMAQRQALIQHCLFVRSM 167
           S H     KAE  E+GGCTPW+LVG+I+LLF+MAQRQALI+HCLFVRSM
Sbjct: 121 SEH-----KAEDEEIGGCTPWVLVGIIVLLFNMAQRQALIRHCLFVRSM 164

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6573437.18.5e-5568.48hypothetical protein SDJN03_27324, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8653331.12.1e-5368.05hypothetical protein Csa_023242 [Cucumis sativus][more]
KAA0043344.11.8e-5265.68hypothetical protein E6C27_scaffold110G002580 [Cucumis melo var. makuwa] >TYK026... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LW232.9e-5369.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G554550 PE=4 SV=1[more]
A0A5A7TJ528.6e-5365.68Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0022961.1Sed0022961.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane