Sed0022922 (gene) Chayote v1

Overview


Name	Sed0022922
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Signaling peptide TAXIMIN 2
Location	LG04: 30569430 .. 30570278 (-)
RNA-Seq Expression	Sed0022922
Synteny	Sed0022922

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATGTCGTTGCAGGCCATTAGGGTTCTTGATTGGCCTTCCTTTTGCCCTTATTTCATTGGTTCTCTCCTTCATTGGTGCTATTCTTTGGATCTTTTGGTGAGTTTCCTTTTCCTCATTATTATTCTTTTCTCTTTCTTAACATTCCTTAAAGAAAACCCAAAATTACCCATTTTTCAATTTTGAAATAACATTACATAAACACTCCTCCTCCGTTTCATGGCTATTTCATTTTTTGTTTTTTGTTTTTTGTTTTTCATTTTTTGTTTCATGTTATCATGCTATTCAAAAAATTATTATGAAAAAATCATTTCCATTTTCTCAATTTTCAATTTCAATTAAGGTATGAAAGTCTCGCAACTTTTATAAAATCACATGAACAGTTTTCTATTTACCAGTTGCACAATTTTGAAATAAAAACTCATGTTATTTACTAGCGCCTCATCTCAGCATTGATCTTTTGTTTCCAACTCATCCCAACCTTATATTTCGAACACAGATTATATACAAAACTCAATGCTATTCGCCAAAAGCCCGAATTTTCATCAATTTCTTAAATAGATGGGAGATGTAGATTTGAATCTCTTCCTCCTAAACGTTTTACACCATGACTTTTTTTTTTGTCATCTTTAAAAATTGGCAACATTGGGTGTTACCCTTTTTTTTAATGAATTGAAATAGTAATTGATTAATGTTTGTGTATGATTTTGATGATTTGGGTAGGACTGTTTTGAGCTGCATTTGCCCTTGCTGTATATGTTTTGCAGTGCTTTCAAATTTAGCACTCAGCCTTGTGCAGCTTCCCATTGATATAATGGTGTGGTTCACTGATTTGATTCCTTATTAG

mRNA sequence

ATGGGATGTCGTTGCAGGCCATTAGGGTTCTTGATTGGCCTTCCTTTTGCCCTTATTTCATTGGTTCTCTCCTTCATTGGTGCTATTCTTTGGATCTTTTGGACTGTTTTGAGCTGCATTTGCCCTTGCTGTATATGTTTTGCAGTGCTTTCAAATTTAGCACTCAGCCTTGTGCAGCTTCCCATTGATATAATGGTGTGGTTCACTGATTTGATTCCTTATTAG

Coding sequence (CDS)

ATGGGATGTCGTTGCAGGCCATTAGGGTTCTTGATTGGCCTTCCTTTTGCCCTTATTTCATTGGTTCTCTCCTTCATTGGTGCTATTCTTTGGATCTTTTGGACTGTTTTGAGCTGCATTTGCCCTTGCTGTATATGTTTTGCAGTGCTTTCAAATTTAGCACTCAGCCTTGTGCAGCTTCCCATTGATATAATGGTGTGGTTCACTGATTTGATTCCTTATTAG

Protein sequence

MGCRCRPLGFLIGLPFALISLVLSFIGAILWIFWTVLSCICPCCICFAVLSNLALSLVQLPIDIMVWFTDLIPY

Homology

[Close]

BLAST of Sed0022922 vs. NCBI nr
Match: XP_004146276.1 (signaling peptide TAXIMIN 1-like [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 3.8e-23
Identity = 56/73 (76.71%), Postives = 68/73 (93.15%), Query Frame = 0


Query: 1  MGCRCRPLGFLIGLPFALISLVLSFIGAILWIFWTVLSCICPCCICFAVLSNLALSLVQL 60
          M C CRPLGFLIGLPFA++SLVLSFIGA+LWIFW++LSCICPCC+CFAVLS+L++SL++L
Sbjct: 1  MAC-CRPLGFLIGLPFAILSLVLSFIGALLWIFWSLLSCICPCCVCFAVLSDLSISLLKL 60

Query: 61 PIDIMVWFTDLIP 74
          PID+M WF  LIP
Sbjct: 61 PIDVMDWFVSLIP 72

[Close]

BLAST of Sed0022922 vs. NCBI nr
Match: XP_008456209.1 (PREDICTED: uncharacterized protein LOC103496213 [Cucumis melo])

HSP 1 Score: 109.4 bits (272), Expect = 1.4e-20
Identity = 50/68 (73.53%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 6  RPLGFLIGLPFALISLVLSFIGAILWIFWTVLSCICPCCICFAVLSNLALSLVQLPIDIM 65
          +PLGFLIGLPF+ +SLVLSFIGA+LWIFW++LSCICPCC+CFAVLS+ ++SL++LPI++M
Sbjct: 4  KPLGFLIGLPFSFLSLVLSFIGALLWIFWSLLSCICPCCVCFAVLSDFSISLMKLPINVM 63

Query: 66 VWFTDLIP 74
           WF DLIP
Sbjct: 64 DWFIDLIP 71

[Close]

BLAST of Sed0022922 vs. NCBI nr
Match: XP_025013869.1 (uncharacterized protein LOC112535506 [Ricinus communis])

HSP 1 Score: 107.5 bits (267), Expect = 5.2e-20
Identity = 53/69 (76.81%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 5  CRPLGFLIGLPFALISLVLSFIGAILWIFWTVLSCICPCCICFAVLSNLALSLVQLPIDI 64
          CRPLGFLIGLPFALISL+LS IGAI+W+  +VLSCICPCCIC A L+NLA+SLVQLP++I
Sbjct: 4  CRPLGFLIGLPFALISLILSLIGAIIWVIGSVLSCICPCCICCAGLANLAMSLVQLPVNI 63

Query: 65 MVWFTDLIP 74
          + WF DLIP
Sbjct: 64 IQWFIDLIP 72

[Close]

BLAST of Sed0022922 vs. NCBI nr
Match: KAG5254931.1 (signaling peptide TAXIMIN [Salix suchowensis])

HSP 1 Score: 106.3 bits (264), Expect = 1.2e-19
Identity = 51/69 (73.91%), Postives = 63/69 (91.30%), Query Frame = 0


Query: 5  CRPLGFLIGLPFALISLVLSFIGAILWIFWTVLSCICPCCICFAVLSNLALSLVQLPIDI 64
          CRPLGFLIGLPFALI+LVLS IGA++W+  +VLSCICPCCIC A L+NLA+SLV+LP+ +
Sbjct: 4  CRPLGFLIGLPFALIALVLSLIGAVVWVIGSVLSCICPCCICCAGLANLAVSLVKLPVKV 63

Query: 65 MVWFTDLIP 74
          ++WFTDLIP
Sbjct: 64 ILWFTDLIP 72

[Close]

BLAST of Sed0022922 vs. NCBI nr
Match: XP_027927264.1 (signaling peptide TAXIMIN 2-like [Vigna unguiculata] >QCE09707.1 hypothetical protein DEO72_LG10g929 [Vigna unguiculata])

HSP 1 Score: 106.3 bits (264), Expect = 1.2e-19
Identity = 48/72 (66.67%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 2  GCRCRPLGFLIGLPFALISLVLSFIGAILWIFWTVLSCICPCCICFAVLSNLALSLVQLP 61
          GC CRPLGFLIGLPFAL++L+LS +GA++W+F +VLSC+CPCCIC A L+NLA+SLV+LP
Sbjct: 5  GCECRPLGFLIGLPFALLALILSLVGAVIWVFGSVLSCLCPCCICCAGLANLAVSLVKLP 64

Query: 62 IDIMVWFTDLIP 74
          + ++ WFT  IP
Sbjct: 65 VKVLRWFTRQIP 76

[Close]

BLAST of Sed0022922 vs. ExPASy Swiss-Prot
Match: Q1G309 (Signaling peptide TAXIMIN 2 OS=Arabidopsis thaliana OX=3702 GN=TAX2 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.8e-20
Identity = 45/69 (65.22%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 5  CRPLGFLIGLPFALISLVLSFIGAILWIFWTVLSCICPCCICFAVLSNLALSLVQLPIDI 64
          CRPLGFLIGLPFAL++LVL+ +GA++WI  TVLSC+CPCC CFA L+N A+ L++LPI +
Sbjct: 4  CRPLGFLIGLPFALVALVLALVGAVIWIIGTVLSCLCPCCFCFAALANFAVDLIKLPIKV 63

Query: 65 MVWFTDLIP 74
          + WFT  IP
Sbjct: 64 LRWFTHSIP 72

[Close]

BLAST of Sed0022922 vs. ExPASy Swiss-Prot
Match: O82275 (Signaling peptide TAXIMIN 1 OS=Arabidopsis thaliana OX=3702 GN=TAX1 PE=2 SV=2)

HSP 1 Score: 87.4 bits (215), Expect = 7.3e-17
Identity = 41/69 (59.42%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 5  CRPLGFLIGLPFALISLVLSFIGAILWIFWTVLSCICPCCICFAVLSNLALSLVQLPIDI 64
          CRPLGFL+GLPFA +SL+LS IG I+WI   +LSCICPCC+C  VL  +A+ L++ PI +
Sbjct: 6  CRPLGFLLGLPFAFLSLLLSIIGVIIWIVGLLLSCICPCCLCVTVLVEIAIGLIKAPIHV 65

Query: 65 MVWFTDLIP 74
          M WF   IP
Sbjct: 66 MEWFMSKIP 74

[Close]

BLAST of Sed0022922 vs. ExPASy TrEMBL
Match: A0A1S3C2P5 (uncharacterized protein LOC103496213 OS=Cucumis melo OX=3656 GN=LOC103496213 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.6e-21
Identity = 50/68 (73.53%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 6  RPLGFLIGLPFALISLVLSFIGAILWIFWTVLSCICPCCICFAVLSNLALSLVQLPIDIM 65
          +PLGFLIGLPF+ +SLVLSFIGA+LWIFW++LSCICPCC+CFAVLS+ ++SL++LPI++M
Sbjct: 4  KPLGFLIGLPFSFLSLVLSFIGALLWIFWSLLSCICPCCVCFAVLSDFSISLMKLPINVM 63

Query: 66 VWFTDLIP 74
           WF DLIP
Sbjct: 64 DWFIDLIP 71

[Close]

BLAST of Sed0022922 vs. ExPASy TrEMBL
Match: A0A4D6NCS1 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG10g929 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.6e-20
Identity = 48/72 (66.67%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 2  GCRCRPLGFLIGLPFALISLVLSFIGAILWIFWTVLSCICPCCICFAVLSNLALSLVQLP 61
          GC CRPLGFLIGLPFAL++L+LS +GA++W+F +VLSC+CPCCIC A L+NLA+SLV+LP
Sbjct: 5  GCECRPLGFLIGLPFALLALILSLVGAVIWVFGSVLSCLCPCCICCAGLANLAVSLVKLP 64

Query: 62 IDIMVWFTDLIP 74
          + ++ WFT  IP
Sbjct: 65 VKVLRWFTRQIP 76

[Close]

BLAST of Sed0022922 vs. ExPASy TrEMBL
Match: A0A6N2MDW9 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS358856 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.3e-20
Identity = 49/69 (71.01%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 5  CRPLGFLIGLPFALISLVLSFIGAILWIFWTVLSCICPCCICFAVLSNLALSLVQLPIDI 64
          CRPLGFLIGLPFAL++LVLS +GA++W+  TVLSC+CPCCICFA L+N A+SLV+LP+ +
Sbjct: 4  CRPLGFLIGLPFALVALVLSLVGAVVWVIGTVLSCLCPCCICFAGLANFAVSLVKLPVKV 63

Query: 65 MVWFTDLIP 74
          M WF DLIP
Sbjct: 64 MKWFIDLIP 72

[Close]

BLAST of Sed0022922 vs. ExPASy TrEMBL
Match: A0A1S3TD97 (uncharacterized protein LOC106754246 OS=Vigna radiata var. radiata OX=3916 GN=LOC106754246 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.3e-20
Identity = 47/72 (65.28%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 2  GCRCRPLGFLIGLPFALISLVLSFIGAILWIFWTVLSCICPCCICFAVLSNLALSLVQLP 61
          GC CRPLGFLIGLPFAL++L+LS +GA++W+F ++LSC+CPCCIC A L+NLA+SLV+LP
Sbjct: 5  GCECRPLGFLIGLPFALLALILSLVGAVIWVFGSILSCLCPCCICCAGLANLAVSLVKLP 64

Query: 62 IDIMVWFTDLIP 74
          + ++ WFT  IP
Sbjct: 65 VKVLRWFTRQIP 76

[Close]

BLAST of Sed0022922 vs. ExPASy TrEMBL
Match: A0A0L9UME6 (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g134700 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.3e-20
Identity = 47/72 (65.28%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 2  GCRCRPLGFLIGLPFALISLVLSFIGAILWIFWTVLSCICPCCICFAVLSNLALSLVQLP 61
          GC CRPLGFLIGLPFAL++L+LS +GA++W+F ++LSC+CPCCIC A L+NLA+SLV+LP
Sbjct: 5  GCECRPLGFLIGLPFALLALILSLVGAVIWVFGSILSCLCPCCICCAGLANLAVSLVKLP 64

Query: 62 IDIMVWFTDLIP 74
          + ++ WFT  IP
Sbjct: 65 VKVLRWFTRQIP 76

[Close]

BLAST of Sed0022922 vs. TAIR 10
Match: AT2G20562.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31090.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 99.4 bits (246), Expect = 1.3e-21
Identity = 45/69 (65.22%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 5  CRPLGFLIGLPFALISLVLSFIGAILWIFWTVLSCICPCCICFAVLSNLALSLVQLPIDI 64
          CRPLGFLIGLPFAL++LVL+ +GA++WI  TVLSC+CPCC CFA L+N A+ L++LPI +
Sbjct: 4  CRPLGFLIGLPFALVALVLALVGAVIWIIGTVLSCLCPCCFCFAALANFAVDLIKLPIKV 63

Query: 65 MVWFTDLIP 74
          + WFT  IP
Sbjct: 64 LRWFTHSIP 72

[Close]

BLAST of Sed0022922 vs. TAIR 10
Match: AT2G31090.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20562.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 87.4 bits (215), Expect = 5.2e-18
Identity = 41/69 (59.42%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 5  CRPLGFLIGLPFALISLVLSFIGAILWIFWTVLSCICPCCICFAVLSNLALSLVQLPIDI 64
          CRPLGFL+GLPFA +SL+LS IG I+WI   +LSCICPCC+C  VL  +A+ L++ PI +
Sbjct: 6  CRPLGFLLGLPFAFLSLLLSIIGVIIWIVGLLLSCICPCCLCVTVLVEIAIGLIKAPIHV 65

Query: 65 MVWFTDLIP 74
          M WF   IP
Sbjct: 66 MEWFMSKIP 74

The following BLAST results are available for this feature:

BLAST of Sed0022922 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146276.1	3.8e-23	76.71	signaling peptide TAXIMIN 1-like [Cucumis sativus]	[more]
XP_008456209.1	1.4e-20	73.53	PREDICTED: uncharacterized protein LOC103496213 [Cucumis melo]	[more]
XP_025013869.1	5.2e-20	76.81	uncharacterized protein LOC112535506 [Ricinus communis]	[more]
KAG5254931.1	1.2e-19	73.91	signaling peptide TAXIMIN [Salix suchowensis]	[more]
XP_027927264.1	1.2e-19	66.67	signaling peptide TAXIMIN 2-like [Vigna unguiculata] >QCE09707.1 hypothetical pr...	[more]

BLAST of Sed0022922 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1G309	1.8e-20	65.22	Signaling peptide TAXIMIN 2 OS=Arabidopsis thaliana OX=3702 GN=TAX2 PE=2 SV=1	[more]
O82275	7.3e-17	59.42	Signaling peptide TAXIMIN 1 OS=Arabidopsis thaliana OX=3702 GN=TAX1 PE=2 SV=2	[more]

BLAST of Sed0022922 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C2P5	6.6e-21	73.53	uncharacterized protein LOC103496213 OS=Cucumis melo OX=3656 GN=LOC103496213 PE=...	[more]
A0A4D6NCS1	5.6e-20	66.67	Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG10g929 PE=4 SV=1	[more]
A0A6N2MDW9	7.3e-20	71.01	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS358856 PE=4 SV=...	[more]
A0A1S3TD97	7.3e-20	65.28	uncharacterized protein LOC106754246 OS=Vigna radiata var. radiata OX=3916 GN=LO...	[more]
A0A0L9UME6	7.3e-20	65.28	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g134700 PE...	[more]

BLAST of Sed0022922 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20562.1	1.3e-21	65.22	unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana prot...	[more]
AT2G31090.1	5.2e-18	59.42	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33834	SIGNALING PEPTIDE TAXIMIN 2	coord: 5..73
None	No IPR available	PANTHER	PTHR33834:SF10	SUBFAMILY NOT NAMED	coord: 5..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0022922.1	Sed0022922.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane