Sed0022921 (gene) Chayote v1

Overview


Name	Sed0022921
Type	gene
Organism	Sechium edule (Chayote v1)
Description	myrosinase-binding protein 2-like
Location	LG11: 25626089 .. 25627395 (+)
RNA-Seq Expression	Sed0022921
Synteny	Sed0022921

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCTGCTGTCCTTTGCCATATTTTTCTGCCAACAACAAATGACCCCTCGAGCTTATGTCTTAATCTTCTTCTTCTGGTCTCTCCTCACCATCCTCACTCCTACCCTCATTTTTCTCTCCGAGAATTCTAAATCGTCATCGGTCTCACTCGATTCTACGGGTAAAATTTCATTTAGTAGGCGTTCTTGTTTTTTGTTTTTCATTTCTAGTTCCTAATTCTTCTTTTTTTAATCAAACATTCAAAGAGTTTGTGAGTGTCTCGGTCAGTTTGCGTGTACAACTTAACTATTGTCACGGGATATATCCCCGGATTCTACAATATTTGAATGTCAAATAAATTTGTAGAAAATTAATTTCTAAGTACATGACCATCATGAACTGAATCTATCACTTCTTAATTTCTTTAGACCATCTTGACCGCCTGTCATGATGGGTAAAAGTGTCTTACATATCTTCAATACATTTTGATTGATTTCTCTAACAAAATAAGGAAAAATAAAATTTTATTTTTATTTTTAATTCAGATCACATTAAAAAGTAGGCGAAGGAACAAATATGACAATTGAGTTCTTATCTTCTTTGACAATAATAGGTTAAAGATTAGTAAATTATATTGTTAATGGTGGTTATTGTTTGTTACATTCACTTTCGATAAAAATAATAATAATAACAACAACAGTATGATTAACATTAATTTCTCTCTTCTCTCAAATTCTCCATTAAAATTGCCTAAAAAATATTGTAACAAAAAAAATAATGCCTAAAAAAATCTCCTTTAAAAAAAGTTTAAATGTACCGGATTTTGTTGAAATTAAAATTTGTAAATAATTTTGAGAACGTTTCTTAAAAATGAGAAATTTAATCCAAGACTTTTGTCTAATTTTTTTTTTTTTTGAACAGAAAACTTTTGTCTAATTTTGGTGCTTATTCTCTGTTTGGCAGATGGGAAAAACAGAGGGATTCAAATGAGTAGAAAAGTTGTGGGATTGACCACAAAGTATCCGATGTTGAAAGTTTTGGCCGAAGAACAGACTGCACCGGCGGCGATTCCGACACCAATTACAGCACCGTCGCCGTCTCCATCGCCGGCTCCGGCGCCGTCCGCCGCCGTGCCGTTACGGAGTTTCATGGCTGGTGCTGGAAAAGTAATATTGACAACGTTGAAGGGCTTAAAAGAAGTATATTGAATTTAAGGGTAGGATAGTAATTTAGGTAGTCTCTGGATATTGTCTTATTTTAAAATAAAAATTCACATAGTGTTTGTTTGGAAACCACCAAATATTTTGACCCTCTTGGTAAATAAAAGAG

mRNA sequence

ATCTGCTGTCCTTTGCCATATTTTTCTGCCAACAACAAATGACCCCTCGAGCTTATGTCTTAATCTTCTTCTTCTGGTCTCTCCTCACCATCCTCACTCCTACCCTCATTTTTCTCTCCGAGAATTCTAAATCGTCATCGGTCTCACTCGATTCTACGGATGGGAAAAACAGAGGGATTCAAATGAGTAGAAAAGTTGTGGGATTGACCACAAAGTATCCGATGTTGAAAGTTTTGGCCGAAGAACAGACTGCACCGGCGGCGATTCCGACACCAATTACAGCACCGTCGCCGTCTCCATCGCCGGCTCCGGCGCCGTCCGCCGCCGTGCCGTTACGGAGTTTCATGGCTGGTGCTGGAAAAGTAATATTGACAACGTTGAAGGGCTTAAAAGAAGTATATTGAATTTAAGGGTAGGATAGTAATTTAGGTAGTCTCTGGATATTGTCTTATTTTAAAATAAAAATTCACATAGTGTTTGTTTGGAAACCACCAAATATTTTGACCCTCTTGGTAAATAAAAGAG

Coding sequence (CDS)

ATGACCCCTCGAGCTTATGTCTTAATCTTCTTCTTCTGGTCTCTCCTCACCATCCTCACTCCTACCCTCATTTTTCTCTCCGAGAATTCTAAATCGTCATCGGTCTCACTCGATTCTACGGATGGGAAAAACAGAGGGATTCAAATGAGTAGAAAAGTTGTGGGATTGACCACAAAGTATCCGATGTTGAAAGTTTTGGCCGAAGAACAGACTGCACCGGCGGCGATTCCGACACCAATTACAGCACCGTCGCCGTCTCCATCGCCGGCTCCGGCGCCGTCCGCCGCCGTGCCGTTACGGAGTTTCATGGCTGGTGCTGGAAAAGTAATATTGACAACGTTGAAGGGCTTAAAAGAAGTATATTGA

Protein sequence

MTPRAYVLIFFFWSLLTILTPTLIFLSENSKSSSVSLDSTDGKNRGIQMSRKVVGLTTKYPMLKVLAEEQTAPAAIPTPITAPSPSPSPAPAPSAAVPLRSFMAGAGKVILTTLKGLKEVY

Homology

[Close]

BLAST of Sed0022921 vs. NCBI nr
Match: XP_023002554.1 (uncharacterized protein LOC111496365 [Cucurbita maxima])

HSP 1 Score: 169.5 bits (428), Expect = 1.8e-38
Identity = 95/120 (79.17%), Postives = 103/120 (85.83%), Query Frame = 0


Query: 1   MTPRAYVLIFFFWSLLTILTPTLIFLSENSKSSSVSLDSTDGKNRGIQMSRKVVGLTTKY 60
           MTPRAYVLIFFFWSLLTILTP L+FLSENSK+SS+S  S DGK  GIQMSRK+VGLT KY
Sbjct: 1   MTPRAYVLIFFFWSLLTILTPALVFLSENSKTSSLSSQSPDGKIGGIQMSRKIVGLTRKY 60

Query: 61  PMLKVLAEEQTAPAAIPTPITAPSPSPSPAPAPSAAVPLRSFMAGAGKVILTTLKGLKEV 120
            MLKVL EEQT+PAAIPTPITAP+P+PS A  P  AVPLR FMAGAGKVI+TTLKGL  V
Sbjct: 61  EMLKVLVEEQTSPAAIPTPITAPAPAPSTALPPGTAVPLRRFMAGAGKVIVTTLKGLSIV 120

[Close]

BLAST of Sed0022921 vs. NCBI nr
Match: XP_038885597.1 (uncharacterized protein LOC120075920 [Benincasa hispida])

HSP 1 Score: 168.3 bits (425), Expect = 4.0e-38
Identity = 97/121 (80.17%), Postives = 104/121 (85.95%), Query Frame = 0


Query: 1   MTPRAYVLIFFFWSLLTILTPTLIFLSENSKSSSVSLDSTDGKNRGIQMSRKVVGLTTKY 60
           MTPRAYVLIFFFWSLLTILTP L+FLS+NSK SS+S  STDGKN GI+MSRKVVGLT KY
Sbjct: 1   MTPRAYVLIFFFWSLLTILTPALVFLSDNSKPSSLSFKSTDGKNGGIEMSRKVVGLTRKY 60

Query: 61  PMLKVLAEEQTAPAAIPTPITAPSPSPSPAPAPSAAVPLRSFMAGAGKVILTTLKGLKEV 120
            MLKVLAEEQTAPAAIPTPITA  P+ SPAPA  AAV +R FMA  GKVILTTLKGLKE 
Sbjct: 61  QMLKVLAEEQTAPAAIPTPITA--PALSPAPALGAAVSVRKFMADTGKVILTTLKGLKEA 119

Query: 121 Y 122
           +
Sbjct: 121 H 119

[Close]

BLAST of Sed0022921 vs. NCBI nr
Match: XP_022144206.1 (uncharacterized protein LOC111013954 [Momordica charantia])

HSP 1 Score: 167.5 bits (423), Expect = 6.9e-38
Identity = 94/119 (78.99%), Postives = 97/119 (81.51%), Query Frame = 0


Query: 1   MTPRAYVLIFFFWSLLTILTPTLIFLSENSKSSSVSLDSTDGKNRGIQMSRKVVGLTTKY 60
           MTPRAYVLIFFFWS LTILTP L+ LSENSKS   S DS DGKN GI MSRKVVGLT KY
Sbjct: 1   MTPRAYVLIFFFWSFLTILTPALVLLSENSKSPPPSFDSPDGKNGGINMSRKVVGLTRKY 60

Query: 61  PMLKVLAEEQTAPAAIPTPITAPSPSPSPAPAPSAAVPLRSFMAGAGKVILTTLKGLKE 120
            MLKVLAEEQ AP AIP P+T P PSPSPAPAP A  P+R FMAGAGKVILTTLK LKE
Sbjct: 61  EMLKVLAEEQKAPTAIPIPVTVPVPSPSPAPAPDADFPVRRFMAGAGKVILTTLKVLKE 119

[Close]

BLAST of Sed0022921 vs. NCBI nr
Match: XP_008444727.1 (PREDICTED: uncharacterized protein LOC103487977 [Cucumis melo] >KAA0065226.1 uncharacterized protein E6C27_scaffold82G005650 [Cucumis melo var. makuwa])

HSP 1 Score: 167.2 bits (422), Expect = 9.0e-38
Identity = 92/121 (76.03%), Postives = 103/121 (85.12%), Query Frame = 0


Query: 1   MTPRAYVLIFFFWSLLTILTPTLIFLSENSKSSSVSLDSTDGKNRGIQMSRKVVGLTTKY 60
           MTPRAYVLIFFFWSLLTILTP L+FLSENSK S VS +STDG+N GI+MSRKVVGLT KY
Sbjct: 1   MTPRAYVLIFFFWSLLTILTPALVFLSENSKPSLVSFESTDGENGGIEMSRKVVGLTRKY 60

Query: 61  PMLKVLAEEQTAPAAIPTPITAPSPSPSPAPAPSAAVPLRSFMAGAGKVILTTLKGLKEV 120
            MLK+LAEEQ AP  IPTPITAP+PSP+PA AP  AVP+  FMA A K+IL+TLKGLKE 
Sbjct: 61  QMLKILAEEQRAPPLIPTPITAPAPSPAPASAPGNAVPVGRFMANARKLILSTLKGLKEA 120

Query: 121 Y 122
           +
Sbjct: 121 H 121

[Close]

BLAST of Sed0022921 vs. NCBI nr
Match: XP_011649628.1 (uncharacterized protein LOC105434646 [Cucumis sativus] >KGN62609.1 hypothetical protein Csa_021820 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 5.8e-37
Identity = 92/119 (77.31%), Postives = 101/119 (84.87%), Query Frame = 0


Query: 1   MTPRAYVLIFFFWSLLTILTPTLIFLSENSKSSSVSLDSTDGKNRGIQMSRKVVGLTTKY 60
           MTPRAYVLIFFFWSLLTILTP L+FLSENSK S +S +STDGKN GI+MSRKVVGLT KY
Sbjct: 1   MTPRAYVLIFFFWSLLTILTPALVFLSENSKPSLLSFESTDGKNGGIEMSRKVVGLTRKY 60

Query: 61  PMLKVLAEEQTAPAAIPTPITAPSPSPSPAPAPSAAVPLRSFMAGAGKVILTTLKGLKE 120
            MLK+LAEEQ AP  IPTPITAP+PSP+PAPA     P+R FMA AG+VIL TLKGLKE
Sbjct: 61  QMLKILAEEQRAPPLIPTPITAPAPSPTPAPA-----PVRRFMADAGEVILRTLKGLKE 114

[Close]

BLAST of Sed0022921 vs. ExPASy TrEMBL
Match: A0A6J1KQS2 (uncharacterized protein LOC111496365 OS=Cucurbita maxima OX=3661 GN=LOC111496365 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 8.8e-39
Identity = 95/120 (79.17%), Postives = 103/120 (85.83%), Query Frame = 0


Query: 1   MTPRAYVLIFFFWSLLTILTPTLIFLSENSKSSSVSLDSTDGKNRGIQMSRKVVGLTTKY 60
           MTPRAYVLIFFFWSLLTILTP L+FLSENSK+SS+S  S DGK  GIQMSRK+VGLT KY
Sbjct: 1   MTPRAYVLIFFFWSLLTILTPALVFLSENSKTSSLSSQSPDGKIGGIQMSRKIVGLTRKY 60

Query: 61  PMLKVLAEEQTAPAAIPTPITAPSPSPSPAPAPSAAVPLRSFMAGAGKVILTTLKGLKEV 120
            MLKVL EEQT+PAAIPTPITAP+P+PS A  P  AVPLR FMAGAGKVI+TTLKGL  V
Sbjct: 61  EMLKVLVEEQTSPAAIPTPITAPAPAPSTALPPGTAVPLRRFMAGAGKVIVTTLKGLSIV 120

[Close]

BLAST of Sed0022921 vs. ExPASy TrEMBL
Match: A0A6J1CSM4 (uncharacterized protein LOC111013954 OS=Momordica charantia OX=3673 GN=LOC111013954 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 3.3e-38
Identity = 94/119 (78.99%), Postives = 97/119 (81.51%), Query Frame = 0


Query: 1   MTPRAYVLIFFFWSLLTILTPTLIFLSENSKSSSVSLDSTDGKNRGIQMSRKVVGLTTKY 60
           MTPRAYVLIFFFWS LTILTP L+ LSENSKS   S DS DGKN GI MSRKVVGLT KY
Sbjct: 1   MTPRAYVLIFFFWSFLTILTPALVLLSENSKSPPPSFDSPDGKNGGINMSRKVVGLTRKY 60

Query: 61  PMLKVLAEEQTAPAAIPTPITAPSPSPSPAPAPSAAVPLRSFMAGAGKVILTTLKGLKE 120
            MLKVLAEEQ AP AIP P+T P PSPSPAPAP A  P+R FMAGAGKVILTTLK LKE
Sbjct: 61  EMLKVLAEEQKAPTAIPIPVTVPVPSPSPAPAPDADFPVRRFMAGAGKVILTTLKVLKE 119

[Close]

BLAST of Sed0022921 vs. ExPASy TrEMBL
Match: A0A5A7VFX0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005650 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.4e-38
Identity = 92/121 (76.03%), Postives = 103/121 (85.12%), Query Frame = 0


Query: 1   MTPRAYVLIFFFWSLLTILTPTLIFLSENSKSSSVSLDSTDGKNRGIQMSRKVVGLTTKY 60
           MTPRAYVLIFFFWSLLTILTP L+FLSENSK S VS +STDG+N GI+MSRKVVGLT KY
Sbjct: 1   MTPRAYVLIFFFWSLLTILTPALVFLSENSKPSLVSFESTDGENGGIEMSRKVVGLTRKY 60

Query: 61  PMLKVLAEEQTAPAAIPTPITAPSPSPSPAPAPSAAVPLRSFMAGAGKVILTTLKGLKEV 120
            MLK+LAEEQ AP  IPTPITAP+PSP+PA AP  AVP+  FMA A K+IL+TLKGLKE 
Sbjct: 61  QMLKILAEEQRAPPLIPTPITAPAPSPAPASAPGNAVPVGRFMANARKLILSTLKGLKEA 120

Query: 121 Y 122
           +
Sbjct: 121 H 121

[Close]

BLAST of Sed0022921 vs. ExPASy TrEMBL
Match: A0A1S3BAZ8 (uncharacterized protein LOC103487977 OS=Cucumis melo OX=3656 GN=LOC103487977 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.4e-38
Identity = 92/121 (76.03%), Postives = 103/121 (85.12%), Query Frame = 0


Query: 1   MTPRAYVLIFFFWSLLTILTPTLIFLSENSKSSSVSLDSTDGKNRGIQMSRKVVGLTTKY 60
           MTPRAYVLIFFFWSLLTILTP L+FLSENSK S VS +STDG+N GI+MSRKVVGLT KY
Sbjct: 1   MTPRAYVLIFFFWSLLTILTPALVFLSENSKPSLVSFESTDGENGGIEMSRKVVGLTRKY 60

Query: 61  PMLKVLAEEQTAPAAIPTPITAPSPSPSPAPAPSAAVPLRSFMAGAGKVILTTLKGLKEV 120
            MLK+LAEEQ AP  IPTPITAP+PSP+PA AP  AVP+  FMA A K+IL+TLKGLKE 
Sbjct: 61  QMLKILAEEQRAPPLIPTPITAPAPSPAPASAPGNAVPVGRFMANARKLILSTLKGLKEA 120

Query: 121 Y 122
           +
Sbjct: 121 H 121

[Close]

BLAST of Sed0022921 vs. ExPASy TrEMBL
Match: A0A0A0LNM8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361730 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.8e-37
Identity = 92/119 (77.31%), Postives = 101/119 (84.87%), Query Frame = 0


Query: 1   MTPRAYVLIFFFWSLLTILTPTLIFLSENSKSSSVSLDSTDGKNRGIQMSRKVVGLTTKY 60
           MTPRAYVLIFFFWSLLTILTP L+FLSENSK S +S +STDGKN GI+MSRKVVGLT KY
Sbjct: 1   MTPRAYVLIFFFWSLLTILTPALVFLSENSKPSLLSFESTDGKNGGIEMSRKVVGLTRKY 60

Query: 61  PMLKVLAEEQTAPAAIPTPITAPSPSPSPAPAPSAAVPLRSFMAGAGKVILTTLKGLKE 120
            MLK+LAEEQ AP  IPTPITAP+PSP+PAPA     P+R FMA AG+VIL TLKGLKE
Sbjct: 61  QMLKILAEEQRAPPLIPTPITAPAPSPTPAPA-----PVRRFMADAGEVILRTLKGLKE 114

The following BLAST results are available for this feature:

BLAST of Sed0022921 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023002554.1	1.8e-38	79.17	uncharacterized protein LOC111496365 [Cucurbita maxima]	[more]
XP_038885597.1	4.0e-38	80.17	uncharacterized protein LOC120075920 [Benincasa hispida]	[more]
XP_022144206.1	6.9e-38	78.99	uncharacterized protein LOC111013954 [Momordica charantia]	[more]
XP_008444727.1	9.0e-38	76.03	PREDICTED: uncharacterized protein LOC103487977 [Cucumis melo] >KAA0065226.1 unc...	[more]
XP_011649628.1	5.8e-37	77.31	uncharacterized protein LOC105434646 [Cucumis sativus] >KGN62609.1 hypothetical ...	[more]

BLAST of Sed0022921 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0022921 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KQS2	8.8e-39	79.17	uncharacterized protein LOC111496365 OS=Cucurbita maxima OX=3661 GN=LOC111496365...	[more]
A0A6J1CSM4	3.3e-38	78.99	uncharacterized protein LOC111013954 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A5A7VFX0	4.4e-38	76.03	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3BAZ8	4.4e-38	76.03	uncharacterized protein LOC103487977 OS=Cucumis melo OX=3656 GN=LOC103487977 PE=...	[more]
A0A0A0LNM8	2.8e-37	77.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361730 PE=4 SV=1	[more]

BLAST of Sed0022921 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 117..121
None	No IPR available	PANTHER	PTHR38396	TRANSMEMBRANE PROTEIN	coord: 1..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0022921.1	Sed0022921.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane