Sed0022883 (gene) Chayote v1

Overview
NameSed0022883
Typegene
OrganismSechium edule (Chayote v1)
DescriptionTy3/gypsy retrotransposon protein
LocationLG01: 69297972 .. 69298580 (+)
RNA-Seq ExpressionSed0022883
SyntenySed0022883
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACGGTATCCTGAAACCATATTTAAGGCGGTTTATGTTAGTCTTTTTTGATGATATACTTGTTTATAGTGCCACCATGAAGGAACATACTGAGCATGTAGCCAAGGTACTTGGCGTTTTGAGTGACAACAAGCTAGTGGGCAATAGGAAGAAGTGTCAGTTTGGGATGTTGCAAATTGAATATTTGGGACACTTGGTGTCAAAGGAAGGGTTGCAGGCTGATCCCGCAAAAATTGAGGCAATGGTCAAGTGGCTGACTCTGAGGAACATCAGAGATATGAGAGGGTTTTTAGGCCTCACTGGGTACTACCGATGGTTCGTATCCAATTATGGGGCTTTGGCCTTACCCCTGACCCAACTGTTGAAGAAGGGGAAGTATGAATGGAATGTGTTAGCCGAGGATGCCTTCCAACGGCTCAAGAGCGCAATGATAAGCATTCCAGTACTACGGCTGCCTGATTTTACTCGATCATTCGTGGTGGAAACTGACGCATCGGGTGTGGGAGTTGGGGCAGTATTGATGCAAGAGGGACGACCCATTGCATATTTTAGTAAGGCACTTCGCCGACTCATCGCTACAAGGGTGTCTATGAGCGCGAACTCATGA

mRNA sequence

ATGAACGGTATCCTGAAACCATATTTAAGGCGGTTTATGTTAGTCTTTTTTGATGATATACTTGTTTATAGTGCCACCATGAAGGAACATACTGAGCATGTAGCCAAGGTACTTGGCGTTTTGAGTGACAACAAGCTAGTGGGCAATAGGAAGAAGTGTCAGTTTGGGATGTTGCAAATTGAATATTTGGGACACTTGGTGTCAAAGGAAGGGTTGCAGGCTGATCCCGCAAAAATTGAGGCAATGGTCAAGTGGCTGACTCTGAGGAACATCAGAGATATGAGAGGGTTTTTAGGCCTCACTGGGTACTACCGATGGTTCGTATCCAATTATGGGGCTTTGGCCTTACCCCTGACCCAACTGTTGAAGAAGGGGAAGTATGAATGGAATGTGTTAGCCGAGGATGCCTTCCAACGGCTCAAGAGCGCAATGATAAGCATTCCAGTACTACGGCTGCCTGATTTTACTCGATCATTCGTGGTGGAAACTGACGCATCGGGTGTGGGAGTTGGGGCAGTATTGATGCAAGAGGGACGACCCATTGCATATTTTAGTAAGGCACTTCGCCGACTCATCGCTACAAGGGTGTCTATGAGCGCGAACTCATGA

Coding sequence (CDS)

ATGAACGGTATCCTGAAACCATATTTAAGGCGGTTTATGTTAGTCTTTTTTGATGATATACTTGTTTATAGTGCCACCATGAAGGAACATACTGAGCATGTAGCCAAGGTACTTGGCGTTTTGAGTGACAACAAGCTAGTGGGCAATAGGAAGAAGTGTCAGTTTGGGATGTTGCAAATTGAATATTTGGGACACTTGGTGTCAAAGGAAGGGTTGCAGGCTGATCCCGCAAAAATTGAGGCAATGGTCAAGTGGCTGACTCTGAGGAACATCAGAGATATGAGAGGGTTTTTAGGCCTCACTGGGTACTACCGATGGTTCGTATCCAATTATGGGGCTTTGGCCTTACCCCTGACCCAACTGTTGAAGAAGGGGAAGTATGAATGGAATGTGTTAGCCGAGGATGCCTTCCAACGGCTCAAGAGCGCAATGATAAGCATTCCAGTACTACGGCTGCCTGATTTTACTCGATCATTCGTGGTGGAAACTGACGCATCGGGTGTGGGAGTTGGGGCAGTATTGATGCAAGAGGGACGACCCATTGCATATTTTAGTAAGGCACTTCGCCGACTCATCGCTACAAGGGTGTCTATGAGCGCGAACTCATGA

Protein sequence

MNGILKPYLRRFMLVFFDDILVYSATMKEHTEHVAKVLGVLSDNKLVGNRKKCQFGMLQIEYLGHLVSKEGLQADPAKIEAMVKWLTLRNIRDMRGFLGLTGYYRWFVSNYGALALPLTQLLKKGKYEWNVLAEDAFQRLKSAMISIPVLRLPDFTRSFVVETDASGVGVGAVLMQEGRPIAYFSKALRRLIATRVSMSANS
Homology
BLAST of Sed0022883 vs. NCBI nr
Match: KAA0055700.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 249.2 bits (635), Expect = 3.0e-62
Identity = 116/188 (61.70%), Postives = 146/188 (77.66%), Query Frame = 0

Query: 1   MNGILKPYLRRFMLVFFDDILVYSATMKEHTEHVAKVLGVLSDNKLVGNRKKCQFGMLQI 60
           MN + KPYLRRF+LVFFDDIL+YS  M EH +H+  VLG+L D +L  N +KC F   +I
Sbjct: 760 MNQVFKPYLRRFVLVFFDDILIYSQGMDEHVQHLEVVLGLLQDRELFVNMEKCSFAKPRI 819

Query: 61  EYLGHLVSKEGLQADPAKIEAMVKWLTLRNIRDMRGFLGLTGYYRWFVSNYGALALPLTQ 120
            YLGH +S++GL+ADP KI A+ +W T  N+R++RGFLGLTGYYR FV NYGA+A PLTQ
Sbjct: 820 SYLGHFISEQGLEADPEKIRAVSEWPTPTNVREVRGFLGLTGYYRRFVKNYGAIAAPLTQ 879

Query: 121 LLKKGKYEWNVLAEDAFQRLKSAMISIPVLRLPDFTRSFVVETDASGVGVGAVLMQEGRP 180
           LLKKG Y+W+  AEDAF +LK AM+++PVL +PDF   F +E+DASGVGVGAVL Q  +P
Sbjct: 880 LLKKGTYKWDAEAEDAFNKLKKAMMTLPVLTMPDFNLPFEIESDASGVGVGAVLTQCRKP 939

Query: 181 IAYFSKAL 189
           +AYFSK L
Sbjct: 940 VAYFSKTL 947

BLAST of Sed0022883 vs. NCBI nr
Match: XP_010541181.1 (PREDICTED: uncharacterized protein LOC104814705 [Tarenaya hassleriana])

HSP 1 Score: 247.7 bits (631), Expect = 8.7e-62
Identity = 116/188 (61.70%), Postives = 145/188 (77.13%), Query Frame = 0

Query: 1   MNGILKPYLRRFMLVFFDDILVYSATMKEHTEHVAKVLGVLSDNKLVGNRKKCQFGMLQI 60
           MN I +PYLR+F+LVFFDDILVYS ++++H  H+  VL VL  +KL  N+KKC+FG  QI
Sbjct: 115 MNEIFRPYLRKFVLVFFDDILVYSCSLQDHATHLQTVLAVLQKHKLYANKKKCEFGRQQI 174

Query: 61  EYLGHLVSKEGLQADPAKIEAMVKWLTLRNIRDMRGFLGLTGYYRWFVSNYGALALPLTQ 120
           +YLGH++S+EG+  DPAK  AM KW T  N++++RGFLGLTGYYR FV NYG +A PLT 
Sbjct: 175 DYLGHIISQEGVSTDPAKTAAMQKWPTPSNVKELRGFLGLTGYYRRFVQNYGTIARPLTD 234

Query: 121 LLKKGKYEWNVLAEDAFQRLKSAMISIPVLRLPDFTRSFVVETDASGVGVGAVLMQEGRP 180
           LLKK  + W+  A  AF++LK AM S PVL LPDF   FVVETDASG G+GAVLMQ+ RP
Sbjct: 235 LLKKDGFNWSEDASSAFRKLKQAMTSAPVLGLPDFREDFVVETDASGFGIGAVLMQKHRP 294

Query: 181 IAYFSKAL 189
           IA+FS+AL
Sbjct: 295 IAFFSQAL 302

BLAST of Sed0022883 vs. NCBI nr
Match: KAA0064684.1 (tetratricopeptide repeat protein SKI3 [Cucumis melo var. makuwa] >TYK19906.1 tetratricopeptide repeat protein SKI3 [Cucumis melo var. makuwa])

HSP 1 Score: 247.3 bits (630), Expect = 1.1e-61
Identity = 113/188 (60.11%), Postives = 147/188 (78.19%), Query Frame = 0

Query: 1   MNGILKPYLRRFMLVFFDDILVYSATMKEHTEHVAKVLGVLSDNKLVGNRKKCQFGMLQI 60
           MN I KP+LR+F+LVFFDDIL+YS    +H EH+ KVL VL +++L  N+KKC F   ++
Sbjct: 583 MNTIFKPFLRKFVLVFFDDILIYSKNTVDHVEHMRKVLSVLREHELYANKKKCSFAQQKV 642

Query: 61  EYLGHLVSKEGLQADPAKIEAMVKWLTLRNIRDMRGFLGLTGYYRWFVSNYGALALPLTQ 120
           EYLGH++S EG++ DP KI+++ KW    NI+++RGFLGLTGYYR FV NYGA+A PLTQ
Sbjct: 643 EYLGHIMSGEGVEVDPEKIKSITKWPKPTNIKEVRGFLGLTGYYRRFVQNYGAIAAPLTQ 702

Query: 121 LLKKGKYEWNVLAEDAFQRLKSAMISIPVLRLPDFTRSFVVETDASGVGVGAVLMQEGRP 180
           LLKKG Y+W+  AEDAF+RLK AM S+P+L LPDF + F ++TDASG GVGAVL+Q  RP
Sbjct: 703 LLKKGGYKWSAEAEDAFERLKKAMSSLPILALPDFNQPFEIDTDASGYGVGAVLIQAKRP 762

Query: 181 IAYFSKAL 189
           IAY++  L
Sbjct: 763 IAYYNHTL 770

BLAST of Sed0022883 vs. NCBI nr
Match: TYK05078.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 246.9 bits (629), Expect = 1.5e-61
Identity = 115/188 (61.17%), Postives = 144/188 (76.60%), Query Frame = 0

Query: 1   MNGILKPYLRRFMLVFFDDILVYSATMKEHTEHVAKVLGVLSDNKLVGNRKKCQFGMLQI 60
           MN + KPYLRRF+LVFFDDIL+YS  M EH +H+  VLG+L D +L  N +KC F   +I
Sbjct: 257 MNQVFKPYLRRFVLVFFDDILIYSRGMDEHVQHLEVVLGLLQDRELYVNMEKCSFAKPRI 316

Query: 61  EYLGHLVSKEGLQADPAKIEAMVKWLTLRNIRDMRGFLGLTGYYRWFVSNYGALALPLTQ 120
            YLGH +S++GL+ADP KI A+  W T  N+R++RGFLGLTGYYR FV NYGA+A PLTQ
Sbjct: 317 SYLGHFISEQGLEADPEKIRAVSDWPTPSNVREVRGFLGLTGYYRRFVKNYGAIAAPLTQ 376

Query: 121 LLKKGKYEWNVLAEDAFQRLKSAMISIPVLRLPDFTRSFVVETDASGVGVGAVLMQEGRP 180
           LLKKG Y+W+   EDAF +LK AM+++PVL +PDF   F +E+DASGVGVGAVL Q  +P
Sbjct: 377 LLKKGAYKWDTEVEDAFNKLKKAMMTLPVLTMPDFNLPFEIESDASGVGVGAVLTQCRKP 436

Query: 181 IAYFSKAL 189
           +AYFSK L
Sbjct: 437 VAYFSKTL 444

BLAST of Sed0022883 vs. NCBI nr
Match: KAA0047079.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 246.9 bits (629), Expect = 1.5e-61
Identity = 115/188 (61.17%), Postives = 144/188 (76.60%), Query Frame = 0

Query: 1   MNGILKPYLRRFMLVFFDDILVYSATMKEHTEHVAKVLGVLSDNKLVGNRKKCQFGMLQI 60
           MN + KPYLRRF+LVFFDDIL+YS  M EH +H+  VLG+L D +L  N +KC F   +I
Sbjct: 257 MNQVFKPYLRRFVLVFFDDILIYSRGMDEHVQHLEVVLGLLQDRELYVNMEKCSFAKPRI 316

Query: 61  EYLGHLVSKEGLQADPAKIEAMVKWLTLRNIRDMRGFLGLTGYYRWFVSNYGALALPLTQ 120
            YLGH +S++GL+ADP KI A+  W T  N+R++RGFLGLTGYYR FV NYGA+A PLTQ
Sbjct: 317 SYLGHFISEQGLEADPEKIRAVSDWPTPSNVREVRGFLGLTGYYRRFVKNYGAIAAPLTQ 376

Query: 121 LLKKGKYEWNVLAEDAFQRLKSAMISIPVLRLPDFTRSFVVETDASGVGVGAVLMQEGRP 180
           LLKKG Y+W+   EDAF +LK AM+++PVL +PDF   F +E+DASGVGVGAVL Q  +P
Sbjct: 377 LLKKGAYKWDTEVEDAFNKLKKAMMTLPVLTMPDFNLPFEIESDASGVGVGAVLTQCRKP 436

Query: 181 IAYFSKAL 189
           +AYFSK L
Sbjct: 437 VAYFSKTL 444

BLAST of Sed0022883 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.2e-37
Identity = 78/190 (41.05%), Postives = 122/190 (64.21%), Query Frame = 0

Query: 1   MNGILKPYLRRFMLVFFDDILVYSATMKEHTEHVAKVLGVLSDNKLVGNRKKCQFGMLQI 60
           MN IL+P L +  LV+ DDI+++S ++ EH   +  V   L+D  L     KC+F   + 
Sbjct: 348 MNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEA 407

Query: 61  EYLGHLVSKEGLQADPAKIEAMVKWLTLRNIRDMRGFLGLTGYYRWFVSNYGALALPLTQ 120
            +LGH+V+ +G++ +P K++A+V +      +++R FLGLTGYYR F+ NY  +A P+T 
Sbjct: 408 NFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTS 467

Query: 121 LLKK-GKYEWNVLAE-DAFQRLKSAMISIPVLRLPDFTRSFVVETDASGVGVGAVLMQEG 180
            LKK  K +   L   +AF++LK+ +I  P+L+LPDF + FV+ TDAS + +GAVL Q G
Sbjct: 468 CLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQNG 527

Query: 181 RPIAYFSKAL 189
            PI++ S+ L
Sbjct: 528 HPISFISRTL 537

BLAST of Sed0022883 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 3.8e-36
Identity = 75/190 (39.47%), Postives = 120/190 (63.16%), Query Frame = 0

Query: 1   MNGILKPYLRRFMLVFFDDILVYSATMKEHTEHVAKVLGVLSDNKLVGNRKKCQFGMLQI 60
           MN IL+P L +  LV+ DDI+V+S ++ EH + +  V   L+   L     KC+F   + 
Sbjct: 349 MNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQET 408

Query: 61  EYLGHLVSKEGLQADPAKIEAMVKWLTLRNIRDMRGFLGLTGYYRWFVSNYGALALPLTQ 120
            +LGH+++ +G++ +P KIEA+ K+      ++++ FLGLTGYYR F+ N+  +A P+T+
Sbjct: 409 TFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTK 468

Query: 121 LLKKGKY--EWNVLAEDAFQRLKSAMISIPVLRLPDFTRSFVVETDASGVGVGAVLMQEG 180
            LKK       N   + AF++LK  +   P+L++PDFT+ F + TDAS V +GAVL Q+G
Sbjct: 469 CLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDG 528

Query: 181 RPIAYFSKAL 189
            P++Y S+ L
Sbjct: 529 HPLSYISRTL 538

BLAST of Sed0022883 vs. ExPASy Swiss-Prot
Match: P92523 (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 GN=AtMg00860 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.5e-32
Identity = 68/130 (52.31%), Postives = 87/130 (66.92%), Query Frame = 0

Query: 33  HVAKVLGVLSDNKLVGNRKKCQFGMLQIEYLG--HLVSKEGLQADPAKIEAMVKWLTLRN 92
           H+  VL +   ++   NRKKC FG  QI YLG  H++S EG+ ADPAK+EAMV W   +N
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 93  IRDMRGFLGLTGYYRWFVSNYGALALPLTQLLKKGKYEWNVLAEDAFQRLKSAMISIPVL 152
             ++RGFLGLTGYYR FV NYG +  PLT+LLKK   +W  +A  AF+ LK A+ ++PVL
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLPVL 122

Query: 153 RLPDFTRSFV 161
            LPD    FV
Sbjct: 123 ALPDLKLPFV 132

BLAST of Sed0022883 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 7.5e-32
Identity = 72/203 (35.47%), Postives = 120/203 (59.11%), Query Frame = 0

Query: 1   MNGILKPYLRRFMLVFFDDILVYSATMKEHTEHVAKVLGVLSDNKLVGNRKKCQFGMLQI 60
           ++ +L+  + +   V+ DD++++S    +H  H+  VL  L D  +  +++K +F    +
Sbjct: 324 LDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQEKTRFFKESV 383

Query: 61  EYLGHLVSKEGLQADPAKIEAMVKWLTLRNIRDMRGFLGLTGYYRWFVSNYGALALPLTQ 120
           EYLG +VSK+G ++DP K++A+ ++     +  +R FLGL  YYR F+ ++ A+A P+T 
Sbjct: 384 EYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITD 443

Query: 121 LL------------KKGKYEWNVLAEDAFQRLKSAMISIPV-LRLPDFTRSFVVETDASG 180
           +L            KK   E+N    +AFQRL++ + S  V L+ PDF + F + TDAS 
Sbjct: 444 ILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFDLTTDASA 503

Query: 181 VGVGAVLMQEGRPIAYFSKALRR 191
            G+GAVL QEGRPI   S+ L++
Sbjct: 504 SGIGAVLSQEGRPITMISRTLKQ 526

BLAST of Sed0022883 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.3e-28
Identity = 66/196 (33.67%), Postives = 111/196 (56.63%), Query Frame = 0

Query: 1   MNGILKPYLRRFMLVFFDDILVYSATMKEHTEHVAKVLGVLSDNKLVGNRKKCQFGMLQI 60
           +N IL       ++ + DDIL++S +  EH +HV  VL  L +  L+ N+ KC+F   Q+
Sbjct: 549 INTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQV 608

Query: 61  EYLGHLVSKEGLQADPAKIEAMVKWLTLRNIRDMRGFLGLTGYYRWFVSNYGALALPLTQ 120
           +++G+ +S++G       I+ +++W   +N +++R FLG   Y R F+     L  PL  
Sbjct: 609 KFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNN 668

Query: 121 LLKKG-KYEWNVLAEDAFQRLKSAMISIPVLRLPDFTRSFVVETDASGVGVGAVLMQEG- 180
           LLKK  +++W      A + +K  ++S PVLR  DF++  ++ETDAS V VGAVL Q+  
Sbjct: 669 LLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHD 728

Query: 181 ----RPIAYFSKALRR 191
                P+ Y+S  + +
Sbjct: 729 DDKYYPVGYYSAKMSK 744

BLAST of Sed0022883 vs. ExPASy TrEMBL
Match: A0A5A7UKN8 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G00820 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 1.5e-62
Identity = 116/188 (61.70%), Postives = 146/188 (77.66%), Query Frame = 0

Query: 1   MNGILKPYLRRFMLVFFDDILVYSATMKEHTEHVAKVLGVLSDNKLVGNRKKCQFGMLQI 60
           MN + KPYLRRF+LVFFDDIL+YS  M EH +H+  VLG+L D +L  N +KC F   +I
Sbjct: 760 MNQVFKPYLRRFVLVFFDDILIYSQGMDEHVQHLEVVLGLLQDRELFVNMEKCSFAKPRI 819

Query: 61  EYLGHLVSKEGLQADPAKIEAMVKWLTLRNIRDMRGFLGLTGYYRWFVSNYGALALPLTQ 120
            YLGH +S++GL+ADP KI A+ +W T  N+R++RGFLGLTGYYR FV NYGA+A PLTQ
Sbjct: 820 SYLGHFISEQGLEADPEKIRAVSEWPTPTNVREVRGFLGLTGYYRRFVKNYGAIAAPLTQ 879

Query: 121 LLKKGKYEWNVLAEDAFQRLKSAMISIPVLRLPDFTRSFVVETDASGVGVGAVLMQEGRP 180
           LLKKG Y+W+  AEDAF +LK AM+++PVL +PDF   F +E+DASGVGVGAVL Q  +P
Sbjct: 880 LLKKGTYKWDAEAEDAFNKLKKAMMTLPVLTMPDFNLPFEIESDASGVGVGAVLTQCRKP 939

Query: 181 IAYFSKAL 189
           +AYFSK L
Sbjct: 940 VAYFSKTL 947

BLAST of Sed0022883 vs. ExPASy TrEMBL
Match: A0A5A7VBR1 (Tetratricopeptide repeat protein SKI3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00180 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 5.5e-62
Identity = 113/188 (60.11%), Postives = 147/188 (78.19%), Query Frame = 0

Query: 1   MNGILKPYLRRFMLVFFDDILVYSATMKEHTEHVAKVLGVLSDNKLVGNRKKCQFGMLQI 60
           MN I KP+LR+F+LVFFDDIL+YS    +H EH+ KVL VL +++L  N+KKC F   ++
Sbjct: 583 MNTIFKPFLRKFVLVFFDDILIYSKNTVDHVEHMRKVLSVLREHELYANKKKCSFAQQKV 642

Query: 61  EYLGHLVSKEGLQADPAKIEAMVKWLTLRNIRDMRGFLGLTGYYRWFVSNYGALALPLTQ 120
           EYLGH++S EG++ DP KI+++ KW    NI+++RGFLGLTGYYR FV NYGA+A PLTQ
Sbjct: 643 EYLGHIMSGEGVEVDPEKIKSITKWPKPTNIKEVRGFLGLTGYYRRFVQNYGAIAAPLTQ 702

Query: 121 LLKKGKYEWNVLAEDAFQRLKSAMISIPVLRLPDFTRSFVVETDASGVGVGAVLMQEGRP 180
           LLKKG Y+W+  AEDAF+RLK AM S+P+L LPDF + F ++TDASG GVGAVL+Q  RP
Sbjct: 703 LLKKGGYKWSAEAEDAFERLKKAMSSLPILALPDFNQPFEIDTDASGYGVGAVLIQAKRP 762

Query: 181 IAYFSKAL 189
           IAY++  L
Sbjct: 763 IAYYNHTL 770

BLAST of Sed0022883 vs. ExPASy TrEMBL
Match: A0A5A7U0S0 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold466G00370 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 7.2e-62
Identity = 115/188 (61.17%), Postives = 144/188 (76.60%), Query Frame = 0

Query: 1   MNGILKPYLRRFMLVFFDDILVYSATMKEHTEHVAKVLGVLSDNKLVGNRKKCQFGMLQI 60
           MN + KPYLRRF+LVFFDDIL+YS  M EH +H+  VLG+L D +L  N +KC F   +I
Sbjct: 257 MNQVFKPYLRRFVLVFFDDILIYSRGMDEHVQHLEVVLGLLQDRELYVNMEKCSFAKPRI 316

Query: 61  EYLGHLVSKEGLQADPAKIEAMVKWLTLRNIRDMRGFLGLTGYYRWFVSNYGALALPLTQ 120
            YLGH +S++GL+ADP KI A+  W T  N+R++RGFLGLTGYYR FV NYGA+A PLTQ
Sbjct: 317 SYLGHFISEQGLEADPEKIRAVSDWPTPSNVREVRGFLGLTGYYRRFVKNYGAIAAPLTQ 376

Query: 121 LLKKGKYEWNVLAEDAFQRLKSAMISIPVLRLPDFTRSFVVETDASGVGVGAVLMQEGRP 180
           LLKKG Y+W+   EDAF +LK AM+++PVL +PDF   F +E+DASGVGVGAVL Q  +P
Sbjct: 377 LLKKGAYKWDTEVEDAFNKLKKAMMTLPVLTMPDFNLPFEIESDASGVGVGAVLTQCRKP 436

Query: 181 IAYFSKAL 189
           +AYFSK L
Sbjct: 437 VAYFSKTL 444

BLAST of Sed0022883 vs. ExPASy TrEMBL
Match: A0A5D3C1D4 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00530 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 7.2e-62
Identity = 115/188 (61.17%), Postives = 144/188 (76.60%), Query Frame = 0

Query: 1   MNGILKPYLRRFMLVFFDDILVYSATMKEHTEHVAKVLGVLSDNKLVGNRKKCQFGMLQI 60
           MN + KPYLRRF+LVFFDDIL+YS  M EH +H+  VLG+L D +L  N +KC F   +I
Sbjct: 257 MNQVFKPYLRRFVLVFFDDILIYSRGMDEHVQHLEVVLGLLQDRELYVNMEKCSFAKPRI 316

Query: 61  EYLGHLVSKEGLQADPAKIEAMVKWLTLRNIRDMRGFLGLTGYYRWFVSNYGALALPLTQ 120
            YLGH +S++GL+ADP KI A+  W T  N+R++RGFLGLTGYYR FV NYGA+A PLTQ
Sbjct: 317 SYLGHFISEQGLEADPEKIRAVSDWPTPSNVREVRGFLGLTGYYRRFVKNYGAIAAPLTQ 376

Query: 121 LLKKGKYEWNVLAEDAFQRLKSAMISIPVLRLPDFTRSFVVETDASGVGVGAVLMQEGRP 180
           LLKKG Y+W+   EDAF +LK AM+++PVL +PDF   F +E+DASGVGVGAVL Q  +P
Sbjct: 377 LLKKGAYKWDTEVEDAFNKLKKAMMTLPVLTMPDFNLPFEIESDASGVGVGAVLTQCRKP 436

Query: 181 IAYFSKAL 189
           +AYFSK L
Sbjct: 437 VAYFSKTL 444

BLAST of Sed0022883 vs. ExPASy TrEMBL
Match: A0A087HA04 (Uncharacterized protein OS=Arabis alpina OX=50452 GN=AALP_AA3G181900 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.6e-61
Identity = 117/188 (62.23%), Postives = 144/188 (76.60%), Query Frame = 0

Query: 1   MNGILKPYLRRFMLVFFDDILVYSATMKEHTEHVAKVLGVLSDNKLVGNRKKCQFGMLQI 60
           MN + K YLRRF+LVFFDDILVYS T+ EH +H+  VLGVL +++L  NRKKC FG   +
Sbjct: 767 MNEVFKKYLRRFVLVFFDDILVYSQTLAEHQDHLRTVLGVLEEHQLYANRKKCYFGCESV 826

Query: 61  EYLGHLVSKEGLQADPAKIEAMVKWLTLRNIRDMRGFLGLTGYYRWFVSNYGALALPLTQ 120
           EYLGH++S EG+ ADP KI AM KW   RN++ +RGFLGLTGYYR FV  YG +A  LT 
Sbjct: 827 EYLGHVISAEGVSADPEKISAMEKWPVPRNVKALRGFLGLTGYYRKFVQRYGEIARTLTA 886

Query: 121 LLKKGKYEWNVLAEDAFQRLKSAMISIPVLRLPDFTRSFVVETDASGVGVGAVLMQEGRP 180
           LLKK K+ W   A++AF +LK AM+++PVL + DFT  FVVE+DASGVG+GAVLMQ  RP
Sbjct: 887 LLKKDKFSWGPEADEAFLKLKRAMVTVPVLAMADFTTLFVVESDASGVGLGAVLMQNQRP 946

Query: 181 IAYFSKAL 189
           IAYFS+AL
Sbjct: 947 IAYFSQAL 954

BLAST of Sed0022883 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 141.0 bits (354), Expect = 1.1e-33
Identity = 68/130 (52.31%), Postives = 87/130 (66.92%), Query Frame = 0

Query: 33  HVAKVLGVLSDNKLVGNRKKCQFGMLQIEYLG--HLVSKEGLQADPAKIEAMVKWLTLRN 92
           H+  VL +   ++   NRKKC FG  QI YLG  H++S EG+ ADPAK+EAMV W   +N
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 93  IRDMRGFLGLTGYYRWFVSNYGALALPLTQLLKKGKYEWNVLAEDAFQRLKSAMISIPVL 152
             ++RGFLGLTGYYR FV NYG +  PLT+LLKK   +W  +A  AF+ LK A+ ++PVL
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLPVL 122

Query: 153 RLPDFTRSFV 161
            LPD    FV
Sbjct: 123 ALPDLKLPFV 132

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0055700.13.0e-6261.70Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
XP_010541181.18.7e-6261.70PREDICTED: uncharacterized protein LOC104814705 [Tarenaya hassleriana][more]
KAA0064684.11.1e-6160.11tetratricopeptide repeat protein SKI3 [Cucumis melo var. makuwa] >TYK19906.1 tet... [more]
TYK05078.11.5e-6161.17Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0047079.11.5e-6161.17Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
P208251.2e-3741.05Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste... [more]
P043233.8e-3639.47Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast... [more]
P925231.5e-3252.31Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 ... [more]
P104017.5e-3235.47Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas... [more]
P0CT412.3e-2833.67Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
Match NameE-valueIdentityDescription
A0A5A7UKN81.5e-6261.70Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7VBR15.5e-6260.11Tetratricopeptide repeat protein SKI3 OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5A7U0S07.2e-6261.17Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3C1D47.2e-6261.17Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A087HA041.6e-6162.23Uncharacterized protein OS=Arabis alpina OX=50452 GN=AALP_AA3G181900 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
ATMG00860.11.1e-3352.31DNA/RNA polymerases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 1..73
e-value: 5.8E-22
score: 80.0
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 77..164
e-value: 1.7E-23
score: 84.4
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 1..65
e-value: 3.0E-9
score: 36.7
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 1..67
score: 9.326595
IPR041577Reverse transcriptase/retrotransposon-derived protein, RNase H-like domainPFAMPF17919RT_RNaseH_2coord: 129..189
e-value: 5.4E-18
score: 64.8
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 8..157
NoneNo IPR availablePANTHERPTHR24559:SF345SUBFAMILY NOT NAMEDcoord: 8..157
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 1..189

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0022883.1Sed0022883.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0016020 membrane
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding