Sed0022046 (gene) Chayote v1

Overview


Name	Sed0022046
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG04: 2824516 .. 2825015 (-)
RNA-Seq Expression	Sed0022046
Synteny	Sed0022046

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATAGTTTTCCATTCATTTCCCATTTGAAAAAAAAAAAACCTCACTCTCTTTACTACTTTTCTTCACTACAATAATTTCGAATTTTCCCGACGCCAAAAGGAAAGCATGGCCGGAGGTAACAGGCAGAAAAAATCTCACTCTTCCTTCTCGTTCTTTGGCTTATTCAAATCAAAGAAGACAAGAAAAGGAGACCATTATGACCACGACGAGATCACGTGCCCTAGAAAGGTATGGCCAAGCGATGCAGACAAGTGCCACCATTGGGTTGCCGAGCCTGGCATCGACAGAAAAGCCAAAGATTATATCGACAGGATCCATCGCAACCGTGTACTAGAAACCGAACGTCAAACTGTTACCGTTGCGCCTTCGTGAGCTAGGACATTCATGTAAATTACCATGAATCAATATATCTCTTTGTTTATTGCTGAATCTCTCCCTACTCTTCTTCCTTTTTGTAATTCATTCCAAGCTCATCAAATAATATACATATATTTCGCTC

mRNA sequence

CATAGTTTTCCATTCATTTCCCATTTGAAAAAAAAAAAACCTCACTCTCTTTACTACTTTTCTTCACTACAATAATTTCGAATTTTCCCGACGCCAAAAGGAAAGCATGGCCGGAGGTAACAGGCAGAAAAAATCTCACTCTTCCTTCTCGTTCTTTGGCTTATTCAAATCAAAGAAGACAAGAAAAGGAGACCATTATGACCACGACGAGATCACGTGCCCTAGAAAGGTATGGCCAAGCGATGCAGACAAGTGCCACCATTGGGTTGCCGAGCCTGGCATCGACAGAAAAGCCAAAGATTATATCGACAGGATCCATCGCAACCGTGTACTAGAAACCGAACGTCAAACTGTTACCGTTGCGCCTTCGTGAGCTAGGACATTCATGTAAATTACCATGAATCAATATATCTCTTTGTTTATTGCTGAATCTCTCCCTACTCTTCTTCCTTTTTGTAATTCATTCCAAGCTCATCAAATAATATACATATATTTCGCTC

Coding sequence (CDS)

ATGGCCGGAGGTAACAGGCAGAAAAAATCTCACTCTTCCTTCTCGTTCTTTGGCTTATTCAAATCAAAGAAGACAAGAAAAGGAGACCATTATGACCACGACGAGATCACGTGCCCTAGAAAGGTATGGCCAAGCGATGCAGACAAGTGCCACCATTGGGTTGCCGAGCCTGGCATCGACAGAAAAGCCAAAGATTATATCGACAGGATCCATCGCAACCGTGTACTAGAAACCGAACGTCAAACTGTTACCGTTGCGCCTTCGTGA

Protein sequence

MAGGNRQKKSHSSFSFFGLFKSKKTRKGDHYDHDEITCPRKVWPSDADKCHHWVAEPGIDRKAKDYIDRIHRNRVLETERQTVTVAPS

Homology

[Close]

BLAST of Sed0022046 vs. NCBI nr
Match: KAG6588556.1 (hypothetical protein SDJN03_17121, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 169.5 bits (428), Expect = 1.3e-38
Identity = 76/86 (88.37%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 3  GGNRQKKSHSSFSFFGLFKSKKTRKGDHYDHDEITCPRKVWPSDADKCHHWVAEPGIDRK 62
          GGN+ KKSHSSFSFFG FKSK+ RKG+HY+HDE++CPRKVWPSDADKCH WVAEPGIDRK
Sbjct: 2  GGNKHKKSHSSFSFFGFFKSKRARKGEHYEHDELSCPRKVWPSDADKCHRWVAEPGIDRK 61

Query: 63 AKDYIDRIHRNRVLETERQTVTVAPS 89
          AKDYIDRIHRNRVLETERQTVTVAPS
Sbjct: 62 AKDYIDRIHRNRVLETERQTVTVAPS 87

[Close]

BLAST of Sed0022046 vs. NCBI nr
Match: KGN45870.1 (hypothetical protein Csa_004960 [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 1.7e-30
Identity = 67/91 (73.63%), Postives = 75/91 (82.42%), Query Frame = 0


Query: 3  GGNRQKKSHSSFSFFGLFKSKKTRKGDHYDH-----DEITCPRKVWPSDADKCHHWVAEP 62
          GGNRQKKSHSSFS F  FKSK+ RKGDHYDH     DE+    KVWPSD DK HHW+AEP
Sbjct: 2  GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61

Query: 63 GIDRKAKDYIDRIHRNRVLETERQTVTVAPS 89
          GIDRKAKDYIDRI+RNRV E+ERQTVT++P+
Sbjct: 62 GIDRKAKDYIDRIYRNRVFESERQTVTISPN 92

[Close]

BLAST of Sed0022046 vs. NCBI nr
Match: KGN65989.1 (hypothetical protein Csa_006868 [Cucumis sativus])

HSP 1 Score: 139.8 bits (351), Expect = 1.1e-29
Identity = 72/95 (75.79%), Postives = 78/95 (82.11%), Query Frame = 0


Query: 3  GGNRQKKSH-SSFSFFGLFKSKKT-RKGDH-YDH-------DEITCPRKVWPSDADKCHH 62
          GGNRQKKSH SSFSF GLFKSK++ RKGDH YDH       ++ +CP KVWPSDADKCH 
Sbjct: 2  GGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSWEDFSCPSKVWPSDADKCHR 61

Query: 63 WVAEPGIDRKAKDYIDRIHRNRVLETERQTVTVAP 88
          WVAEPGIDRKAKDYIDRIHRNRV ET RQTVT+ P
Sbjct: 62 WVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPP 96

[Close]

BLAST of Sed0022046 vs. NCBI nr
Match: KAG6590516.1 (hypothetical protein SDJN03_15939, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132.9 bits (333), Expect = 1.4e-27
Identity = 65/90 (72.22%), Postives = 73/90 (81.11%), Query Frame = 0


Query: 3  GGNRQKKSHSSFSFFGLFKSKKTRKGDHYDH----DEITCPRKVWPSDADKCHHWVAEPG 62
          GGNR KK+ SSFSF   FKSK++RKGD YDH    D+++ P KVWPSDADK HHWVAEPG
Sbjct: 2  GGNRHKKASSSFSFLAFFKSKRSRKGDGYDHGSTWDDLSYPSKVWPSDADKHHHWVAEPG 61

Query: 63 IDRKAKDYIDRIHRNRVLETERQTVTVAPS 89
          IDRKA DYI RIH +RVLET+ QTVTVAPS
Sbjct: 62 IDRKADDYIKRIHLSRVLETKNQTVTVAPS 91

[Close]

BLAST of Sed0022046 vs. NCBI nr
Match: KGN45869.1 (hypothetical protein Csa_005516 [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 1.4e-27
Identity = 63/93 (67.74%), Postives = 74/93 (79.57%), Query Frame = 0


Query: 1  MAGGNRQKKSHSSFSFFGLFKSKKTRKGDHYDH-----DEITCPRKVWPSDADKCHHWVA 60
          M G NRQKK+H+SFS F  FKS++ RKGDH +H     DE+    KVWPSD DK HHWVA
Sbjct: 1  MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61 EPGIDRKAKDYIDRIHRNRVLETERQTVTVAPS 89
          EPGIDRKAKDYIDRI+RNRV E+ERQTVT++P+
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTISPN 93

[Close]

BLAST of Sed0022046 vs. ExPASy TrEMBL
Match: A0A0A0K7Y2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 8.3e-31
Identity = 67/91 (73.63%), Postives = 75/91 (82.42%), Query Frame = 0


Query: 3  GGNRQKKSHSSFSFFGLFKSKKTRKGDHYDH-----DEITCPRKVWPSDADKCHHWVAEP 62
          GGNRQKKSHSSFS F  FKSK+ RKGDHYDH     DE+    KVWPSD DK HHW+AEP
Sbjct: 2  GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61

Query: 63 GIDRKAKDYIDRIHRNRVLETERQTVTVAPS 89
          GIDRKAKDYIDRI+RNRV E+ERQTVT++P+
Sbjct: 62 GIDRKAKDYIDRIYRNRVFESERQTVTISPN 92

[Close]

BLAST of Sed0022046 vs. ExPASy TrEMBL
Match: A0A0A0KBW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.4e-30
Identity = 67/91 (73.63%), Postives = 75/91 (82.42%), Query Frame = 0


Query: 3  GGNRQKKSHSSFSFFGLFKSKKTRKGDHYDH-----DEITCPRKVWPSDADKCHHWVAEP 62
          GGNRQKKSHSSFS F  FKS++ RKGDHYDH     DE+    KVWPSD DK HHWVAEP
Sbjct: 2  GGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAEP 61

Query: 63 GIDRKAKDYIDRIHRNRVLETERQTVTVAPS 89
          GIDRKAKDYIDRI+RNRV E+ERQTVT++P+
Sbjct: 62 GIDRKAKDYIDRIYRNRVFESERQTVTISPN 92

[Close]

BLAST of Sed0022046 vs. ExPASy TrEMBL
Match: A0A0A0LY99 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560730 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 5.4e-30
Identity = 72/95 (75.79%), Postives = 78/95 (82.11%), Query Frame = 0


Query: 3  GGNRQKKSH-SSFSFFGLFKSKKT-RKGDH-YDH-------DEITCPRKVWPSDADKCHH 62
          GGNRQKKSH SSFSF GLFKSK++ RKGDH YDH       ++ +CP KVWPSDADKCH 
Sbjct: 2  GGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSWEDFSCPSKVWPSDADKCHR 61

Query: 63 WVAEPGIDRKAKDYIDRIHRNRVLETERQTVTVAP 88
          WVAEPGIDRKAKDYIDRIHRNRV ET RQTVT+ P
Sbjct: 62 WVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPP 96

[Close]

BLAST of Sed0022046 vs. ExPASy TrEMBL
Match: A0A0A0KAK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 6.6e-28
Identity = 63/93 (67.74%), Postives = 74/93 (79.57%), Query Frame = 0


Query: 1  MAGGNRQKKSHSSFSFFGLFKSKKTRKGDHYDH-----DEITCPRKVWPSDADKCHHWVA 60
          M G NRQKK+H+SFS F  FKS++ RKGDH +H     DE+    KVWPSD DK HHWVA
Sbjct: 1  MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61 EPGIDRKAKDYIDRIHRNRVLETERQTVTVAPS 89
          EPGIDRKAKDYIDRI+RNRV E+ERQTVT++P+
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTISPN 93

[Close]

BLAST of Sed0022046 vs. ExPASy TrEMBL
Match: A0A5A7SWT9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00350 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.1e-27
Identity = 63/93 (67.74%), Postives = 74/93 (79.57%), Query Frame = 0


Query: 1  MAGGNRQKKSHSSFSFFGLFKSKKTRKGDHYDH-----DEITCPRKVWPSDADKCHHWVA 60
          M G NRQKKSHSSFS F  FKS++ RKGD+ +H     DE+    KVWPSD DK HHWVA
Sbjct: 1  MGGNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61 EPGIDRKAKDYIDRIHRNRVLETERQTVTVAPS 89
          EPGIDRKAKDYIDRI+RNRV E+ERQT+T++P+
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTITISPN 93

[Close]

BLAST of Sed0022046 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 62.4 bits (150), Expect = 2.1e-10
Identity = 35/83 (42.17%), Postives = 49/83 (59.04%), Query Frame = 0


Query: 3  GGNRQKKSHSSFSFFGLFKSKKTRKGD-HYDHDEITCPRKVWPSDADKCHHWVAEPGIDR 62
          GG  +  S   FS F  FK++++ + +     D+    RK   SD DK  +WVAEPGIDR
Sbjct: 2  GGKNRSHSSKRFSLFSFFKTRRSHRVEADGSWDDFGYTRKAMASDEDK-RYWVAEPGIDR 61

Query: 63 KAKDYIDRIHRNRVLETERQTVT 85
          KA  +I + H  RV E+ERQT++
Sbjct: 62 KASAFIAKFHATRVSESERQTLS 83

[Close]

BLAST of Sed0022046 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.5 bits (145), Expect = 8.0e-10
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 34 DEITCPRKVWPSDADKCHHWVAEPGIDRKAKDYIDRIHRNRVLETERQTV 84
          D++   RK W SD DK  +WVAEPGIDRKA  +I + H +RV E+ERQT+
Sbjct: 18 DDVIYTRKAWASDEDK-RYWVAEPGIDRKASAFIAKFHASRVSESERQTL 66

[Close]

BLAST of Sed0022046 vs. TAIR 10
Match: AT1G48325.1 (Expressed protein )

HSP 1 Score: 45.1 bits (105), Expect = 3.5e-05
Identity = 25/80 (31.25%), Postives = 46/80 (57.50%), Query Frame = 0


Query: 1  MAGGNRQKKSHSSFSFFGLFKSKKTRKGDHYDHDEITCPR-KVWPSDADKCHHWVAEPGI 60
          M G  R++KS SSFS      ++ +++ D+++ + +   R ++  +D D C   +AEP I
Sbjct: 3  MGGHGRRRKSSSSFSVVKSLFARCSKEKDNWNEERMINVRPRIMTTDDDGCSWTIAEPCI 62

Query: 61 DRKAKDYIDRIHRNRVLETE 80
          DR+A  +I + H   + +TE
Sbjct: 63 DRRATAFIAKFHETPIQDTE 82

The following BLAST results are available for this feature:

BLAST of Sed0022046 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588556.1	1.3e-38	88.37	hypothetical protein SDJN03_17121, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN45870.1	1.7e-30	73.63	hypothetical protein Csa_004960 [Cucumis sativus]	[more]
KGN65989.1	1.1e-29	75.79	hypothetical protein Csa_006868 [Cucumis sativus]	[more]
KAG6590516.1	1.4e-27	72.22	hypothetical protein SDJN03_15939, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN45869.1	1.4e-27	67.74	hypothetical protein Csa_005516 [Cucumis sativus]	[more]

BLAST of Sed0022046 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0022046 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7Y2	8.3e-31	73.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1	[more]
A0A0A0KBW1	1.4e-30	73.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1	[more]
A0A0A0LY99	5.4e-30	75.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560730 PE=4 SV=1	[more]
A0A0A0KAK6	6.6e-28	67.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1	[more]
A0A5A7SWT9	1.1e-27	67.74	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Sed0022046 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05858.1	2.1e-10	42.17	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G26620.1	8.0e-10	56.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G48325.1	3.5e-05	31.25	Expressed protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33511:SF17	RIBOSOMAL PROTEIN S12	coord: 1..84
None	No IPR available	PANTHER	PTHR33511	OS06G0632400 PROTEIN	coord: 1..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0022046.1	Sed0022046.1	mRNA