Sed0022005 (gene) Chayote v1

Overview


Name	Sed0022005
Type	gene
Organism	Sechium edule (Chayote v1)
Description	ribosome-inactivating protein SNAIf-like
Location	LG11: 7715622 .. 7716440 (-)
RNA-Seq Expression	Sed0022005
Synteny	Sed0022005

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGACATCGACAACGACAAACGTAATCAAAACACATCTAGTCGGTCGACGTGGACTATGTTTAGACAGTGATGGGGCGAGTTCCTACAACTTCCCAAAATTAGTACCATGCAAGCCCATGGAAGATACCCAACTTTGGACATTCCCGAACGACGGCACAATTCGTTGGAGCAACGACAGATGCCTATACCCGGAGGGCATGGAAGTTCTCAAGCAATACATCTATGTGAAAACAAGCTATTGTGACAAGTTAAGAGCCGAAGACAAGACGTGGATTTTCAACAATAAAAATGGTTCAATCATACACGTTCACTCAGGCCTTGTTCTGACAGTGGGAAATAACTCCAAGAGTGTGAATGTTGAGTCCAATAGAAATGAGTCATCTCAATTTTGGGACGACGTGGACCGGCACACTGGCCCACGCGTCGGCTACATTATGGGACTTTATAACTACCAATGTTTATTCTTCAACCCCAATTATCCGTTACTTCAGATGTATGATTGTTTGAGATACACTCGAATCAATCAATTATGGGACGTGTTTGACGACTTAACCATTCGTGCAAATGACGATAAAAGTTTGTGCATGACTTCGTTTCGACAATCTAGCCCTTATTATATGATCGGTATGTTTAAATGCCAAGGCTTGGCAGAGCAACGCTGGGAGATGGACTCACACGACTTCACCATTCACCACCCTGACTCTACCTTGGTTATGGATGCAATTACACTTCAAATGGGATCATATCATCCACAAATAATTACTCTTTTTATGCATAATGAGGCTAGTACACAAAAATGGACGTTTGTTGAATGA

mRNA sequence

ATGGGGACATCGACAACGACAAACGTAATCAAAACACATCTAGTCGGTCGACGTGGACTATGTTTAGACAGTGATGGGGCGAGTTCCTACAACTTCCCAAAATTAGTACCATGCAAGCCCATGGAAGATACCCAACTTTGGACATTCCCGAACGACGGCACAATTCGTTGGAGCAACGACAGATGCCTATACCCGGAGGGCATGGAAGTTCTCAAGCAATACATCTATGTGAAAACAAGCTATTGTGACAAGTTAAGAGCCGAAGACAAGACGTGGATTTTCAACAATAAAAATGGTTCAATCATACACGTTCACTCAGGCCTTGTTCTGACAGTGGGAAATAACTCCAAGAGTGTGAATGTTGAGTCCAATAGAAATGAGTCATCTCAATTTTGGGACGACGTGGACCGGCACACTGGCCCACGCGTCGGCTACATTATGGGACTTTATAACTACCAATGTTTATTCTTCAACCCCAATTATCCGTTACTTCAGATGTATGATTGTTTGAGATACACTCGAATCAATCAATTATGGGACGTGTTTGACGACTTAACCATTCGTGCAAATGACGATAAAAGTTTGTGCATGACTTCGTTTCGACAATCTAGCCCTTATTATATGATCGGTATGTTTAAATGCCAAGGCTTGGCAGAGCAACGCTGGGAGATGGACTCACACGACTTCACCATTCACCACCCTGACTCTACCTTGGTTATGGATGCAATTACACTTCAAATGGGATCATATCATCCACAAATAATTACTCTTTTTATGCATAATGAGGCTAGTACACAAAAATGGACGTTTGTTGAATGA

Coding sequence (CDS)

ATGGGGACATCGACAACGACAAACGTAATCAAAACACATCTAGTCGGTCGACGTGGACTATGTTTAGACAGTGATGGGGCGAGTTCCTACAACTTCCCAAAATTAGTACCATGCAAGCCCATGGAAGATACCCAACTTTGGACATTCCCGAACGACGGCACAATTCGTTGGAGCAACGACAGATGCCTATACCCGGAGGGCATGGAAGTTCTCAAGCAATACATCTATGTGAAAACAAGCTATTGTGACAAGTTAAGAGCCGAAGACAAGACGTGGATTTTCAACAATAAAAATGGTTCAATCATACACGTTCACTCAGGCCTTGTTCTGACAGTGGGAAATAACTCCAAGAGTGTGAATGTTGAGTCCAATAGAAATGAGTCATCTCAATTTTGGGACGACGTGGACCGGCACACTGGCCCACGCGTCGGCTACATTATGGGACTTTATAACTACCAATGTTTATTCTTCAACCCCAATTATCCGTTACTTCAGATGTATGATTGTTTGAGATACACTCGAATCAATCAATTATGGGACGTGTTTGACGACTTAACCATTCGTGCAAATGACGATAAAAGTTTGTGCATGACTTCGTTTCGACAATCTAGCCCTTATTATATGATCGGTATGTTTAAATGCCAAGGCTTGGCAGAGCAACGCTGGGAGATGGACTCACACGACTTCACCATTCACCACCCTGACTCTACCTTGGTTATGGATGCAATTACACTTCAAATGGGATCATATCATCCACAAATAATTACTCTTTTTATGCATAATGAGGCTAGTACACAAAAATGGACGTTTGTTGAATGA

Protein sequence

MGTSTTTNVIKTHLVGRRGLCLDSDGASSYNFPKLVPCKPMEDTQLWTFPNDGTIRWSNDRCLYPEGMEVLKQYIYVKTSYCDKLRAEDKTWIFNNKNGSIIHVHSGLVLTVGNNSKSVNVESNRNESSQFWDDVDRHTGPRVGYIMGLYNYQCLFFNPNYPLLQMYDCLRYTRINQLWDVFDDLTIRANDDKSLCMTSFRQSSPYYMIGMFKCQGLAEQRWEMDSHDFTIHHPDSTLVMDAITLQMGSYHPQIITLFMHNEASTQKWTFVE

Homology

[Close]

BLAST of Sed0022005 vs. NCBI nr
Match: XP_022149256.1 (ribosome-inactivating protein SNAIf-like [Momordica charantia])

HSP 1 Score: 260.0 bits (663), Expect = 2.3e-65
Identity = 128/260 (49.23%), Postives = 171/260 (65.77%), Query Frame = 0


Query: 15  VGRRGLCLDSDGASSYNFPKLVPCKPMEDTQLWTFPNDGTIRWSNDRCLYPEGMEVLKQY 74
           +G+ GLCLDSDG S YNFPKLVPC P E+ Q+W   +DGTI W+NDRCL+P G +V  QY
Sbjct: 1   MGQDGLCLDSDGTSRYNFPKLVPCNPKEERQVWNIVDDGTIHWTNDRCLFPYGKKVTGQY 60

Query: 75  IYVKTSYCDKLRAEDKTWIFNNKNGSIIHVHSGLVLTVGNNSKSVNVESNR-NESSQFWD 134
             VKT  CD+L  ++KTW  NN   +I HV SGLVLTV N +K++ V   + N  SQ W 
Sbjct: 61  FLVKTGMCDELTQQEKTWSLNNNPNTISHVDSGLVLTVKNYTKTLTVVPYKSNNPSQIWA 120

Query: 135 DVDRHTGPRVGYIMGLYNYQCLFFNPNYPLLQMY--DCLRYTRINQLWDVFDDLTIRAND 194
             +    PRVG IMGL+NY+CL+ +  +   Q++  DCL  T  NQ+W +F D +IR   
Sbjct: 121 IQE---APRVGLIMGLHNYKCLWSDGPHRSGQVFVHDCLAGTWFNQVWALFHDGSIRLES 180

Query: 195 DKSLCMTSFRQSSPYYMIGMFKCQGLAEQRWEMDSHDFTIHHPDSTLVMDAITLQMGSYH 254
           D+SLC+TS   ++PY+ + +FKC+  AEQRW +++    IHHP S LVMD I +   S  
Sbjct: 181 DRSLCLTSSSGAAPYFFVDVFKCEDKAEQRWVVETDGGAIHHPGSDLVMDVIPM---SNQ 240

Query: 255 PQIITLFMHNEASTQKWTFV 272
           PQ + LF  N A+TQ+WTF+
Sbjct: 241 PQPVVLFSQNGATTQQWTFM 254

[Close]

BLAST of Sed0022005 vs. NCBI nr
Match: XP_016901886.1 (PREDICTED: nigrin b-like [Cucumis melo])

HSP 1 Score: 133.3 bits (334), Expect = 3.2e-27
Identity = 95/263 (36.12%), Postives = 139/263 (52.85%), Query Frame = 0


Query: 12  THLVGRRGLCLDSDG--ASSYNFP-KLVPC-KPMEDTQLWTFPNDGTIRWSNDR-CLYPE 71
           THLVGR GLCL+         NFP +L PC +  + TQLWT   DGTIR  ND+ CL  +
Sbjct: 39  THLVGRDGLCLEMSPWFYRGNNFPTRLSPCDEHKKQTQLWTVVGDGTIRPMNDKFCLVAD 98

Query: 72  GMEVLKQYIYVKTSYCDKLRAEDKTWIFNNKNGSIIHVHSGLVLTVGNNSKSVNVESNRN 131
            +  L     V+   C K    +K W  + K+G+I HV SG+VLT   +S  V ++SN+N
Sbjct: 99  VLVGLINKAVVRE--CAKEPNSNKRWT-HKKDGTITHVESGMVLT--GDSDYVTLQSNKN 158

Query: 132 ESSQFWDDVDRHTGPRVGYIMGLYNYQCLFFNPNYPLLQMYDCLRYTRINQLWDVFDDLT 191
             SQ W+  +  T P +  I  L N  CL    +   + +  C R  + +Q W ++ D T
Sbjct: 159 TPSQSWEATESST-PMIANIEWLNNL-CLQSTDDSNHVGLNGCNRENK-DQRWALYGDGT 218

Query: 192 IRANDDKSLCMTSFRQSSPYYMIGMFKCQGLAEQRWEMDSHDFTIHHPDSTLVMDAITLQ 251
           IR N +++ C+TS      +  I M KC+   +QRW + + D TI HP+S +VMD + + 
Sbjct: 219 IRQNVNRNYCLTSDEYLGRF--IVMSKCEDKPQQRWNLGAKDSTIDHPNSDMVMDVLFVP 278

Query: 252 MGSYHPQIITLFMHNEASTQKWT 270
              +   ++T      AS Q+WT
Sbjct: 279 YYDFSSAVVTNRRDGSAS-QRWT 290

[Close]

BLAST of Sed0022005 vs. NCBI nr
Match: KAA0039058.1 (nigrin b-like [Cucumis melo var. makuwa])

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-26
Identity = 93/263 (35.36%), Postives = 139/263 (52.85%), Query Frame = 0


Query: 12  THLVGRRGLCLDSDG--ASSYNFP-KLVPC-KPMEDTQLWTFPNDGTIRWSNDR-CLYPE 71
           THLVGR GLCL+         NFP +L PC +  + TQLWT   DGTIR  ND+ CL  +
Sbjct: 39  THLVGRDGLCLEMSPWFYRGNNFPTRLSPCDEHKKQTQLWTVVGDGTIRPMNDKFCLVAD 98

Query: 72  GMEVLKQYIYVKTSYCDKLRAEDKTWIFNNKNGSIIHVHSGLVLTVGNNSKSVNVESNRN 131
            +  +     V+   C K    +K W  + K+G+I HV SG+VLT   +S  V ++SN+N
Sbjct: 99  VLVGVINKAVVRE--CAKESNSNKRWT-HKKDGTITHVESGMVLT--GDSDYVTLQSNKN 158

Query: 132 ESSQFWDDVDRHTGPRVGYIMGLYNYQCLFFNPNYPLLQMYDCLRYTRINQLWDVFDDLT 191
             SQ W+  +  T P +  I  L N  CL    +   + +  C R  + +Q W ++ D T
Sbjct: 159 TPSQSWEATESST-PMIANIEWLNNL-CLQSTDDSNHVGLNGCNRENK-DQRWALYGDGT 218

Query: 192 IRANDDKSLCMTSFRQSSPYYMIGMFKCQGLAEQRWEMDSHDFTIHHPDSTLVMDAITLQ 251
           IR N +++ C+TS      +  I M KC+   +QRW + + D TI HP++ +VMD + + 
Sbjct: 219 IRQNVNRNYCLTSDEYLGRF--IVMSKCEDKPQQRWNLGAKDSTIDHPNTDMVMDVLFVP 278

Query: 252 MGSYHPQIITLFMHNEASTQKWT 270
              +   ++T      AS Q+WT
Sbjct: 279 YYDFSSAVVTNRRDGSAS-QRWT 290

[Close]

BLAST of Sed0022005 vs. NCBI nr
Match: TYJ99749.1 (nigrin b-like [Cucumis melo var. makuwa])

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-26
Identity = 93/263 (35.36%), Postives = 139/263 (52.85%), Query Frame = 0


Query: 12  THLVGRRGLCLDSDG--ASSYNFP-KLVPC-KPMEDTQLWTFPNDGTIRWSNDR-CLYPE 71
           THLVGR GLCL+         NFP +L PC +  + TQLWT   DGTIR  ND+ CL  +
Sbjct: 39  THLVGRDGLCLEMSPWFYRGNNFPTRLSPCDEHKKQTQLWTVVGDGTIRPMNDKFCLVAD 98

Query: 72  GMEVLKQYIYVKTSYCDKLRAEDKTWIFNNKNGSIIHVHSGLVLTVGNNSKSVNVESNRN 131
            +  +     V+   C K    +K W  + K+G+I HV SG+VLT   +S  V ++SN+N
Sbjct: 99  VLVGVINKAVVRE--CAKESNSNKRWT-HKKDGTITHVESGMVLT--GDSDYVTLQSNKN 158

Query: 132 ESSQFWDDVDRHTGPRVGYIMGLYNYQCLFFNPNYPLLQMYDCLRYTRINQLWDVFDDLT 191
             SQ W+  +  T P +  I  L N  CL    +   + +  C R  + +Q W ++ D T
Sbjct: 159 TPSQSWEATESST-PMIANIEWLNNL-CLQSTDDSNHVGLNGCNRENK-DQRWALYGDGT 218

Query: 192 IRANDDKSLCMTSFRQSSPYYMIGMFKCQGLAEQRWEMDSHDFTIHHPDSTLVMDAITLQ 251
           IR N +++ C+TS      +  I M KC+   +QRW + + D TI HP++ +VMD + + 
Sbjct: 219 IRQNVNRNYCLTSDEYLGRF--IVMSKCEDKPQQRWNLGAKDSTIDHPNTDMVMDVLFVP 278

Query: 252 MGSYHPQIITLFMHNEASTQKWT 270
              +   ++T      AS Q+WT
Sbjct: 279 YYDFSSAVVTNRRDGSAS-QRWT 290

[Close]

BLAST of Sed0022005 vs. NCBI nr
Match: XP_038885951.1 (nigrin b-like [Benincasa hispida])

HSP 1 Score: 131.0 bits (328), Expect = 1.6e-26
Identity = 98/264 (37.12%), Postives = 141/264 (53.41%), Query Frame = 0


Query: 12  THLVGRRGLCLDSDG--ASSYNFPKLVPCKPMEDTQLWTFPNDGTIRWSNDRCLYPEGME 71
           THLVGR GLCLD  G  + S+   +L PC P ++ QLWT   DGTIR +  +CL P G E
Sbjct: 37  THLVGRDGLCLDVIGGYSDSHIPTQLWPCGP-QNNQLWTIQVDGTIR-TMGKCLVPNGHE 96

Query: 72  VLKQYIYVKTSYCDKLRAEDKTWIFNNKNGSIIHVHSGLVLT-VGNNSKSV-NVESNRNE 131
                 Y     C+K+  +DKTW     +G+++HV SGLVLT  G    ++  +E+N + 
Sbjct: 97  ---PGSYTMIDDCNKVDTQDKTWKL-YPDGTLVHVWSGLVLTGQGTGPHAITTIETNTSA 156

Query: 132 SSQFWDDVDRHTGPRVGYIMGLYNYQCLFFNPNYPLLQMYDCLRYTRINQLWDVFDDLTI 191
            +Q W   D    P V  I+GL  + CL    +   + M  C++  R  Q W V++D TI
Sbjct: 157 PTQSWGTAD-DGSPIVVAIVGL-RHMCLQAQNDNVHVWMNSCVKNNR-QQYWAVYNDGTI 216

Query: 192 RANDDKSLCMTSFRQSSPYYMIGMFKCQGLAEQRWEMDSHDFTIHHPDSTLVMDAITLQM 251
           R N + S C++S  +      IG+ KCQGL +QRW +   D TI +P + +VMD   ++ 
Sbjct: 217 RTNYNTSFCLSSTGKGL-NDAIGLAKCQGLPQQRW-VAKEDGTILNPINNMVMD---VKG 276

Query: 252 GSYHPQIITLFMHNEASTQKWTFV 272
              + + I LF       Q+W FV
Sbjct: 277 SDPNLRKIILFAPTGNPNQQWVFV 286

[Close]

BLAST of Sed0022005 vs. ExPASy Swiss-Prot
Match: O22415 (Ribosome-inactivating protein SNAIf OS=Sambucus nigra OX=4202 GN=SNA-If PE=1 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.3e-22
Identity = 79/236 (33.47%), Postives = 122/236 (51.69%), Query Frame = 0


Query: 10  IKTHLVGRRGLCLD-SDG-ASSYNFPKLVPCKPMEDTQLWTFPNDGTIRWSNDRCLYPEG 69
           +   + G  GLC+D  DG     N  +L PC   E  QLWTF  DGTIRW   +CL    
Sbjct: 321 VTRRISGWDGLCVDVRDGHYIDGNTVQLGPC-GNECNQLWTFRTDGTIRWLG-KCLTTSS 380

Query: 70  MEVLKQYIYVKTSYCDKLRAEDKTWIFNNKNGSIIHVHSGLVLTVGNNSK--SVNVESNR 129
             ++          C+ +  E   W+ +  +G+I +  SGLVLT    ++  ++++E+N 
Sbjct: 381 SVMIYD--------CNTVPPEATKWVVST-DGTITNPRSGLVLTAPQAAEGTALSLENNI 440

Query: 130 NESSQFWDDVDRHTGPRVGYIMGLYNYQCLFFNPNYPLLQMYDCLRYTRINQLWDVFDDL 189
           + + Q W   D    P V +I+G Y   CL  N     + + DC+   R+ Q W ++ D 
Sbjct: 441 HAARQGWTVGD--VEPLVTFIVG-YKQMCLTENGENNFVWLEDCV-LNRVEQEWALYGDG 500

Query: 190 TIRANDDKSLCMTSFRQSSPYYMIGMFKCQGLAEQRWEMDSHDFTIHHPDSTLVMD 242
           TIR N ++SLC+TS     P  +I + KC+G   QRW  +++  TI +P++ LVMD
Sbjct: 501 TIRVNSNRSLCVTS-EDHEPSDLIVILKCEGSGNQRWVFNTNG-TISNPNAKLVMD 539

[Close]

BLAST of Sed0022005 vs. ExPASy Swiss-Prot
Match: Q41358 (Ribosome-inactivating protein SNAI OS=Sambucus nigra OX=4202 GN=SNA-I PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 9.5e-22
Identity = 79/240 (32.92%), Postives = 123/240 (51.25%), Query Frame = 0


Query: 10  IKTHLVGRRGLCLD------SDGASSYNFPKLVPCKPMEDTQLWTFPNDGTIRWSNDRCL 69
           +   + G  GLC+D       DG    N  +L PC   E  QLWTF  DGTIRW   +CL
Sbjct: 321 VTRRISGWDGLCVDVRYGHYIDG----NPVQLRPC-GNECNQLWTFRTDGTIRWLG-KCL 380

Query: 70  YPEGMEVLKQYIYVKTSYCDKLRAEDKTWIFNNKNGSIIHVHSGLVLTVGNNSK--SVNV 129
                 ++          C+ +  E   W+  + +G+I + HSGLVLT    ++  ++++
Sbjct: 381 TASSSVMIYD--------CNTVPPEATKWVV-SIDGTITNPHSGLVLTAPQAAEGTALSL 440

Query: 130 ESNRNESSQFWDDVDRHTGPRVGYIMGLYNYQCLFFNPNYPLLQMYDCLRYTRINQLWDV 189
           E+N + + Q W   D    P V +I+G Y   CL  N     + + DC+   R+ Q W +
Sbjct: 441 ENNIHAARQGWTVGD--VEPLVTFIVG-YKQMCLRENGENNFVWLEDCV-LNRVQQEWAL 500

Query: 190 FDDLTIRANDDKSLCMTSFRQSSPYYMIGMFKCQGLAEQRWEMDSHDFTIHHPDSTLVMD 242
           + D TIR N ++SLC+TS     P  +I + KC+G   QRW  +++  TI +P++ L+MD
Sbjct: 501 YGDGTIRVNSNRSLCVTS-EDHEPSDLIVILKCEGSGNQRWVFNTNG-TISNPNAKLLMD 539

[Close]

BLAST of Sed0022005 vs. ExPASy Swiss-Prot
Match: P93543 (Ribosome-inactivating protein SNAI' OS=Sambucus nigra OX=4202 PE=1 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.8e-20
Identity = 76/230 (33.04%), Postives = 117/230 (50.87%), Query Frame = 0


Query: 16  GRRGLCLD-SDGASSYNFPKLVPCKPMEDTQLWTFPNDGTIRWSNDRCLYPEGMEVLKQY 75
           GR G C +  +G      P  +     +  Q WTF  DGTI+ S  +CL      ++   
Sbjct: 323 GRDGFCAEVKNGDEKDGTPVQLSSCGEQSNQQWTFSTDGTIQ-SLGKCLTTSSSVMIYN- 382

Query: 76  IYVKTSYCDKLRAEDKTWIFNNKNGSIIHVHSGLVLTVGNNSKS--VNVESNRNESSQFW 135
                  C  +  E   W+  + +G+I +  SGLVLT    ++   V++E N + + Q W
Sbjct: 383 -------CKVVPPESTKWVV-SIDGTITNPRSGLVLTAPKAAEGTLVSLEKNVHAARQGW 442

Query: 136 DDVDRHTGPRVGYIMGLYNYQCLFFNPNYPLLQMYDC--LRYTRINQLWDVFDDLTIRAN 195
             +  +  P V +I+G Y   CL  NP    + + DC     ++++Q W ++ D TIR N
Sbjct: 443 --IVGNVEPLVTFIVG-YEQMCLETNPGNNDVSLGDCSVKSASKVDQKWALYGDGTIRVN 502

Query: 196 DDKSLCMTSFRQSSPYYMIGMFKCQGLAEQRWEMDSHDFTIHHPDSTLVM 241
           +D+SLC+TS  +SS   +I + KC G A QRW  ++ D TI +PDS LVM
Sbjct: 503 NDRSLCVTSEGKSSNEPII-ILKCLGWANQRWVFNT-DGTISNPDSKLVM 537

[Close]

BLAST of Sed0022005 vs. ExPASy Swiss-Prot
Match: Q9M654 (Ribosome-inactivating protein PMRIPm OS=Polygonatum multiflorum OX=45371 GN=RIPm PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.4e-17
Identity = 87/273 (31.87%), Postives = 129/273 (47.25%), Query Frame = 0


Query: 16  GRRGLCLD-SDGASSYNFP-KLVPC-KPMEDTQLWTFPNDGTIRWSNDRCLYPEGMEVLK 75
           GR G C+D  DG  +   P +++ C    E  Q WTF  DGTIR    +C+   G    K
Sbjct: 343 GRAGWCVDVKDGRDNDGNPIQVLSCGDGQERKQQWTFHRDGTIRSKLGKCMTAYG---FK 402

Query: 76  QYIYVKTSYCDKLRAEDKTWIFNNKNGSIIHVHSGLVLTV--GNNSKSVNVESNRNESSQ 135
              YV    CD   A    W+  + +G+I +  SGLVLT   G    ++ VE N + + Q
Sbjct: 403 HGEYVMIYDCDTAIAGANKWVV-SIDGTITNPISGLVLTAPRGATGTTLLVEKNVHAARQ 462

Query: 136 FW---DDVDRHTGPRVGYIMGLYNYQCLFFN-------PNYPLLQMYDCLRYTRINQLWD 195
            W   DDV+    P V  I+G +  +CL  N         Y  + + DC+   R  Q W 
Sbjct: 463 CWRVGDDVE----PIVTKIVG-FQEKCLEANYLENTNVSRYTKVFLDDCV-LDRQQQRWA 522

Query: 196 VFDDLTIRANDDKSLCMTSFRQSSPYYMIGMFKCQGLAEQRWEMDSHDFTIHHPDSTLVM 255
           ++ D TIRA+ D+SL +T+    S   +I +  C+G   QRW  ++ D TI +P++ LVM
Sbjct: 523 LYSDGTIRADSDRSLRVTADGHRSLDSII-ILACKGWGNQRWVFNT-DGTILNPNAKLVM 582

Query: 256 DAITLQMGSYHPQIITLFMHNEAS--TQKWTFV 272
           D     +      ++ + +H       QKW  V
Sbjct: 583 DVKDSDV-----SLLQIILHQSTGKPNQKWLTV 598

[Close]

BLAST of Sed0022005 vs. ExPASy Swiss-Prot
Match: Q9M653 (Ribosome-inactivating protein PMRIPt OS=Polygonatum multiflorum OX=45371 GN=RIPt PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.2e-16
Identity = 86/261 (32.95%), Postives = 124/261 (47.51%), Query Frame = 0


Query: 16  GRRGLCLDSDGASSYN-FP-KLVPCKPMEDTQLWTFPNDGTIRWSNDRCLYPEGMEVLKQ 75
           G  GLC+D    S+ +  P +L PC    + Q WTF  DGTI+ S  +C+   G      
Sbjct: 346 GLDGLCMDVRNESNNDGIPIQLWPCGAQRNQQ-WTFHTDGTIQ-SMGKCMTSNGYH---P 405

Query: 76  YIYVKTSYCDKLRAEDKTWIFNNKNGSIIHVHSGLVLTVGNNSKSVNVESNRNESS---- 135
             YV    C      D T    + +GSI + HSGLVLT    +++  +   RN  S    
Sbjct: 406 GDYVMIFNCSTAPVPDATKWVVSIDGSITNPHSGLVLTAPQAAQTTILLVVRNTHSAKQG 465

Query: 136 -QFWDDVDRHTGPRVGYIMGLYNYQCL-FFNPNYPLLQMYDCLRYTRINQLWDVFDDLTI 195
               DDV+    P V YI+G + Y CL   N N   + + DC    R  Q W ++ D TI
Sbjct: 466 RSVGDDVE----PIVTYIVG-FKYMCLQGNNENNTRVWLEDC-AVDRPQQWWALYSDGTI 525

Query: 196 RANDDKSLCMTSFRQSSPYYMIGMFKCQGLAEQRWEMDSHDFTIHHPDSTLVMDAITLQM 255
           R + D+SLC+TS   SS   +I +  C G   QR   ++ D TI +P++ LVMD   ++ 
Sbjct: 526 RVDSDRSLCVTSDGHSSRDAII-ILTCDGGINQRLVFNT-DGTILNPNAQLVMD---VRQ 585

Query: 256 GSYHPQIITLFMHNEASTQKW 269
            +   + I L+       Q+W
Sbjct: 586 SNVALRQIILYQPTGNPNQQW 590

[Close]

BLAST of Sed0022005 vs. ExPASy TrEMBL
Match: A0A6J1D7U5 (ribosome-inactivating protein SNAIf-like OS=Momordica charantia OX=3673 GN=LOC111017720 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.1e-65
Identity = 128/260 (49.23%), Postives = 171/260 (65.77%), Query Frame = 0


Query: 15  VGRRGLCLDSDGASSYNFPKLVPCKPMEDTQLWTFPNDGTIRWSNDRCLYPEGMEVLKQY 74
           +G+ GLCLDSDG S YNFPKLVPC P E+ Q+W   +DGTI W+NDRCL+P G +V  QY
Sbjct: 1   MGQDGLCLDSDGTSRYNFPKLVPCNPKEERQVWNIVDDGTIHWTNDRCLFPYGKKVTGQY 60

Query: 75  IYVKTSYCDKLRAEDKTWIFNNKNGSIIHVHSGLVLTVGNNSKSVNVESNR-NESSQFWD 134
             VKT  CD+L  ++KTW  NN   +I HV SGLVLTV N +K++ V   + N  SQ W 
Sbjct: 61  FLVKTGMCDELTQQEKTWSLNNNPNTISHVDSGLVLTVKNYTKTLTVVPYKSNNPSQIWA 120

Query: 135 DVDRHTGPRVGYIMGLYNYQCLFFNPNYPLLQMY--DCLRYTRINQLWDVFDDLTIRAND 194
             +    PRVG IMGL+NY+CL+ +  +   Q++  DCL  T  NQ+W +F D +IR   
Sbjct: 121 IQE---APRVGLIMGLHNYKCLWSDGPHRSGQVFVHDCLAGTWFNQVWALFHDGSIRLES 180

Query: 195 DKSLCMTSFRQSSPYYMIGMFKCQGLAEQRWEMDSHDFTIHHPDSTLVMDAITLQMGSYH 254
           D+SLC+TS   ++PY+ + +FKC+  AEQRW +++    IHHP S LVMD I +   S  
Sbjct: 181 DRSLCLTSSSGAAPYFFVDVFKCEDKAEQRWVVETDGGAIHHPGSDLVMDVIPM---SNQ 240

Query: 255 PQIITLFMHNEASTQKWTFV 272
           PQ + LF  N A+TQ+WTF+
Sbjct: 241 PQPVVLFSQNGATTQQWTFM 254

[Close]

BLAST of Sed0022005 vs. ExPASy TrEMBL
Match: A0A1S4E0X9 (nigrin b-like OS=Cucumis melo OX=3656 GN=LOC103496121 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.6e-27
Identity = 95/263 (36.12%), Postives = 139/263 (52.85%), Query Frame = 0


Query: 12  THLVGRRGLCLDSDG--ASSYNFP-KLVPC-KPMEDTQLWTFPNDGTIRWSNDR-CLYPE 71
           THLVGR GLCL+         NFP +L PC +  + TQLWT   DGTIR  ND+ CL  +
Sbjct: 39  THLVGRDGLCLEMSPWFYRGNNFPTRLSPCDEHKKQTQLWTVVGDGTIRPMNDKFCLVAD 98

Query: 72  GMEVLKQYIYVKTSYCDKLRAEDKTWIFNNKNGSIIHVHSGLVLTVGNNSKSVNVESNRN 131
            +  L     V+   C K    +K W  + K+G+I HV SG+VLT   +S  V ++SN+N
Sbjct: 99  VLVGLINKAVVRE--CAKEPNSNKRWT-HKKDGTITHVESGMVLT--GDSDYVTLQSNKN 158

Query: 132 ESSQFWDDVDRHTGPRVGYIMGLYNYQCLFFNPNYPLLQMYDCLRYTRINQLWDVFDDLT 191
             SQ W+  +  T P +  I  L N  CL    +   + +  C R  + +Q W ++ D T
Sbjct: 159 TPSQSWEATESST-PMIANIEWLNNL-CLQSTDDSNHVGLNGCNRENK-DQRWALYGDGT 218

Query: 192 IRANDDKSLCMTSFRQSSPYYMIGMFKCQGLAEQRWEMDSHDFTIHHPDSTLVMDAITLQ 251
           IR N +++ C+TS      +  I M KC+   +QRW + + D TI HP+S +VMD + + 
Sbjct: 219 IRQNVNRNYCLTSDEYLGRF--IVMSKCEDKPQQRWNLGAKDSTIDHPNSDMVMDVLFVP 278

Query: 252 MGSYHPQIITLFMHNEASTQKWT 270
              +   ++T      AS Q+WT
Sbjct: 279 YYDFSSAVVTNRRDGSAS-QRWT 290

[Close]

BLAST of Sed0022005 vs. ExPASy TrEMBL
Match: A0A5A7T854 (Nigrin b-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G001540 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 5.9e-27
Identity = 93/263 (35.36%), Postives = 139/263 (52.85%), Query Frame = 0


Query: 12  THLVGRRGLCLDSDG--ASSYNFP-KLVPC-KPMEDTQLWTFPNDGTIRWSNDR-CLYPE 71
           THLVGR GLCL+         NFP +L PC +  + TQLWT   DGTIR  ND+ CL  +
Sbjct: 39  THLVGRDGLCLEMSPWFYRGNNFPTRLSPCDEHKKQTQLWTVVGDGTIRPMNDKFCLVAD 98

Query: 72  GMEVLKQYIYVKTSYCDKLRAEDKTWIFNNKNGSIIHVHSGLVLTVGNNSKSVNVESNRN 131
            +  +     V+   C K    +K W  + K+G+I HV SG+VLT   +S  V ++SN+N
Sbjct: 99  VLVGVINKAVVRE--CAKESNSNKRWT-HKKDGTITHVESGMVLT--GDSDYVTLQSNKN 158

Query: 132 ESSQFWDDVDRHTGPRVGYIMGLYNYQCLFFNPNYPLLQMYDCLRYTRINQLWDVFDDLT 191
             SQ W+  +  T P +  I  L N  CL    +   + +  C R  + +Q W ++ D T
Sbjct: 159 TPSQSWEATESST-PMIANIEWLNNL-CLQSTDDSNHVGLNGCNRENK-DQRWALYGDGT 218

Query: 192 IRANDDKSLCMTSFRQSSPYYMIGMFKCQGLAEQRWEMDSHDFTIHHPDSTLVMDAITLQ 251
           IR N +++ C+TS      +  I M KC+   +QRW + + D TI HP++ +VMD + + 
Sbjct: 219 IRQNVNRNYCLTSDEYLGRF--IVMSKCEDKPQQRWNLGAKDSTIDHPNTDMVMDVLFVP 278

Query: 252 MGSYHPQIITLFMHNEASTQKWT 270
              +   ++T      AS Q+WT
Sbjct: 279 YYDFSSAVVTNRRDGSAS-QRWT 290

[Close]

BLAST of Sed0022005 vs. ExPASy TrEMBL
Match: A0A5D3BL95 (Nigrin b-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold252G00260 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 5.9e-27
Identity = 93/263 (35.36%), Postives = 139/263 (52.85%), Query Frame = 0


Query: 12  THLVGRRGLCLDSDG--ASSYNFP-KLVPC-KPMEDTQLWTFPNDGTIRWSNDR-CLYPE 71
           THLVGR GLCL+         NFP +L PC +  + TQLWT   DGTIR  ND+ CL  +
Sbjct: 39  THLVGRDGLCLEMSPWFYRGNNFPTRLSPCDEHKKQTQLWTVVGDGTIRPMNDKFCLVAD 98

Query: 72  GMEVLKQYIYVKTSYCDKLRAEDKTWIFNNKNGSIIHVHSGLVLTVGNNSKSVNVESNRN 131
            +  +     V+   C K    +K W  + K+G+I HV SG+VLT   +S  V ++SN+N
Sbjct: 99  VLVGVINKAVVRE--CAKESNSNKRWT-HKKDGTITHVESGMVLT--GDSDYVTLQSNKN 158

Query: 132 ESSQFWDDVDRHTGPRVGYIMGLYNYQCLFFNPNYPLLQMYDCLRYTRINQLWDVFDDLT 191
             SQ W+  +  T P +  I  L N  CL    +   + +  C R  + +Q W ++ D T
Sbjct: 159 TPSQSWEATESST-PMIANIEWLNNL-CLQSTDDSNHVGLNGCNRENK-DQRWALYGDGT 218

Query: 192 IRANDDKSLCMTSFRQSSPYYMIGMFKCQGLAEQRWEMDSHDFTIHHPDSTLVMDAITLQ 251
           IR N +++ C+TS      +  I M KC+   +QRW + + D TI HP++ +VMD + + 
Sbjct: 219 IRQNVNRNYCLTSDEYLGRF--IVMSKCEDKPQQRWNLGAKDSTIDHPNTDMVMDVLFVP 278

Query: 252 MGSYHPQIITLFMHNEASTQKWT 270
              +   ++T      AS Q+WT
Sbjct: 279 YYDFSSAVVTNRRDGSAS-QRWT 290

[Close]

BLAST of Sed0022005 vs. ExPASy TrEMBL
Match: A0A6J1FU34 (nigrin b-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446896 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 3.0e-26
Identity = 92/261 (35.25%), Postives = 133/261 (50.96%), Query Frame = 0


Query: 11  KTHLVGRRGLCLDSDGASSYNFP-KLVPCKPMEDTQLWTFPNDGTIRWSNDR-CLYPEGM 70
           +THLVGR GLCLD+     Y  P  L  C+  + +QLW+   DGTIR S+ R CL P+  
Sbjct: 33  RTHLVGRDGLCLDTMLLLGYYPPTHLSQCEQRKSSQLWSILEDGTIRISDVRFCLVPKSQ 92

Query: 71  EVLKQYIYVKTSYCDKLRAEDKTWIFNNKNGSIIHVHSGLVLTVGNNSKSVNVESNRNES 130
                   V    C K    D  W   NK+G+I H  SGLVLT     ++V VE N N  
Sbjct: 93  STEFVGANVVAMDCSKEIRHDMKWT-KNKDGTIHHDESGLVLT-AKPGRTVTVEVNENLP 152

Query: 131 SQFWDDVDRHTGPRVGYIMGLYNYQCLFFNPNYPLLQMYDCLRYTRINQLWDVFDDLTIR 190
           SQ W+  +    P V  I  L N            + + +C R  + NQ W ++ D TIR
Sbjct: 153 SQSWEATETFI-PMVANIKWLDNLCLKSIEGENSYVTLNECSRDDK-NQRWALYGDGTIR 212

Query: 191 ANDDKSLCMTSFRQSSPYYMIGMFKCQGLAEQRWEMDSHDFTIHHPDSTLVMDAITLQMG 250
            N+ + LC+TS  ++    M+ + +C    +QRW + + D TI+HP++ LVMD    +  
Sbjct: 213 QNEYRHLCLTSSERNYG-AMVVVSRCADKPQQRWGL-AEDSTINHPNTNLVMD--VRREV 272

Query: 251 SYHPQIITLFMHNEASTQKWT 270
              P +I +  H+ A++Q+WT
Sbjct: 273 PLLPPMIVVDKHDGAASQRWT 285

The following BLAST results are available for this feature:

BLAST of Sed0022005 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022149256.1	2.3e-65	49.23	ribosome-inactivating protein SNAIf-like [Momordica charantia]	[more]
XP_016901886.1	3.2e-27	36.12	PREDICTED: nigrin b-like [Cucumis melo]	[more]
KAA0039058.1	1.2e-26	35.36	nigrin b-like [Cucumis melo var. makuwa]	[more]
TYJ99749.1	1.2e-26	35.36	nigrin b-like [Cucumis melo var. makuwa]	[more]
XP_038885951.1	1.6e-26	37.12	nigrin b-like [Benincasa hispida]	[more]

BLAST of Sed0022005 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22415	3.3e-22	33.47	Ribosome-inactivating protein SNAIf OS=Sambucus nigra OX=4202 GN=SNA-If PE=1 SV=...	[more]
Q41358	9.5e-22	32.92	Ribosome-inactivating protein SNAI OS=Sambucus nigra OX=4202 GN=SNA-I PE=1 SV=1	[more]
P93543	1.8e-20	33.04	Ribosome-inactivating protein SNAI' OS=Sambucus nigra OX=4202 PE=1 SV=1	[more]
Q9M654	2.4e-17	31.87	Ribosome-inactivating protein PMRIPm OS=Polygonatum multiflorum OX=45371 GN=RIPm...	[more]
Q9M653	1.2e-16	32.95	Ribosome-inactivating protein PMRIPt OS=Polygonatum multiflorum OX=45371 GN=RIPt...	[more]

BLAST of Sed0022005 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D7U5	1.1e-65	49.23	ribosome-inactivating protein SNAIf-like OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A1S4E0X9	1.6e-27	36.12	nigrin b-like OS=Cucumis melo OX=3656 GN=LOC103496121 PE=4 SV=1	[more]
A0A5A7T854	5.9e-27	35.36	Nigrin b-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G001540 ...	[more]
A0A5D3BL95	5.9e-27	35.36	Nigrin b-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold252G00260 ...	[more]
A0A6J1FU34	3.0e-26	35.25	nigrin b-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446896 PE=4 SV=1	[more]

BLAST of Sed0022005 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000772	Ricin B, lectin domain	SMART	SM00458	ricin_3	coord: 8..135 e-value: 1.2E-7 score: 41.4 coord: 141..271 e-value: 1.0E-12 score: 58.3
IPR000772	Ricin B, lectin domain	PFAM	PF00652	Ricin_B_lectin	coord: 144..268 e-value: 2.5E-12 score: 47.1 coord: 13..132 e-value: 1.6E-14 score: 54.3
IPR000772	Ricin B, lectin domain	PROSITE	PS50231	RICIN_B_LECTIN	coord: 6..135 score: 24.059999
IPR000772	Ricin B, lectin domain	PROSITE	PS50231	RICIN_B_LECTIN	coord: 164..271 score: 21.4335
IPR000772	Ricin B, lectin domain	CDD	cd00161	RICIN	coord: 164..270 e-value: 1.49908E-7 score: 47.115
IPR000772	Ricin B, lectin domain	CDD	cd00161	RICIN	coord: 13..133 e-value: 1.03747E-14 score: 67.1454
None	No IPR available	GENE3D	2.80.10.50		coord: 10..135 e-value: 1.6E-21 score: 78.4
None	No IPR available	GENE3D	2.80.10.50		coord: 141..271 e-value: 5.3E-20 score: 73.4
IPR035992	Ricin B-like lectins	SUPERFAMILY	50370	Ricin B-like lectins	coord: 143..270
IPR035992	Ricin B-like lectins	SUPERFAMILY	50370	Ricin B-like lectins	coord: 14..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0022005.1	Sed0022005.1	mRNA