Sed0021948 (gene) Chayote v1

Overview


Name	Sed0021948
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Protein TIC 20
Location	LG01: 8161290 .. 8165387 (-)
RNA-Seq Expression	Sed0021948
Synteny	Sed0021948

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTAAAAAAAGAAAATCCGTGTAGAAGCTGCCTCTCTCCTCTATCCTGCCGGCCGCGCAGCACAAGTTCGCAGATTTCACAACTGCCTTCGATGTTTATGTTGGTGTGCATCAGATTCAGGTACCTTCGCTTCTGGATTCTTAAACCTCTTTTTAACTTTCATCGATTTTTCTGCCATTTCTGATCTGGTAACTTCAAAGATTTTGGGCCATTTTTGCCTTTCATTTCAATCTTCTTTATGCGGATTGTGTTTTTTGTTGAACCTATTCTTGCTCCTATGTACTAGAACTTAATTATGCAATAGAAGAATTCTGCAACGCCCGAACATTGAAATTAGGGTTTTGGGGTTAGAGGAACTTGAAATCCCACAACTTTCTTGGAACCTCTAGTTGAGACTAAACCTATTCGATAGAGGGATTATGAAATCAAGACACCTTTTTTTTGGATTAGAAATAATATCGTTGATGTATGAAATTTAAAAAGAAAGAGCCTCTAGAATTATAAAAGACCTCTCCAATTAGAGAGGATGGAGGGAAAACTGTAGTTATAAAAGATTGGGGAGCGTCTACACTGAGTAATAATCACAATAACTATAGCATACAAAAAATTATAGGGAAATTTCTTATCTCGACATTGTTACACCTTGTTCAGAGTTTAGAGGAAAAAACCTCATTTTTCTGTCTCCTAAGGTTTACCCGCTGAAAGTGTTTTAAAAAGCCCCGTCAAGCGCGCGCTTAGGTGCACCTAGGCCCAAGGCGCGCGCCTTTTGGCGCCTTACGTTAAGCCCCGGATGCCAAAAGGCGCGCGCCTTAGGGTCTTTTTTATTTTCTTTATATTTTTTCATGTGAAACCTTTATCCTTTGTGAGATCTCCGTACTAGGTCATTCAAAGCGCAAGATAACTACTTCAAGAGATTTCAATACCTTAAATAACTTAATTTTTCAACTCACAAAGACAACATTTGCTTAAATGAAAGGTTAATAGTTGAATCTTATGTTTGTTTTGTATATATTCTTAGTTAAACTTCATTTCTTTCTATGAAATGAAGGTTAATAGTTAAATGTAATGTATGTTTTGTATATTATTCTTGGTTAAAATTTCATTTATGTCTATGAAAATGTGTATACACACATATATATATATAAAAAATTGTAGTTGTGCCTCAGGCCCCAGAGGCCCCTTGTGCCTTAGTGCACCTTGGGATTTTTAAAACACTGCCCGCCGAGAAACAGTACAGTAGTGAACAATAGTTTAGCCATCCTTTTATTCACTATAATTTTTCCTTAAAGGGTTGGGACTCTATTTATCATGGACTCAATTTCTTGGTATAGCTTGGTATGTCCTCCTAGAAATCTCAAAGATTAGCTTCTAGAGTTGCTCTGATGGGGATGGTTGCATGATAATGCTCGAGTGTTATGGCCAAATGCCACTAGAGCTTCTCCTCCATATTGCTCTTTTTGAAATAAATAAATTCCAAAAAAGGTTTTGGACAAGCTGGATTCGTTTGCTAATATGTTCAGTTTAGAGCCTCTAATAGGAGTGCAGAGTTCTTTACTCAAATGCTTGTATAATGTAGCTTTCCCATCTAGGTCCTGTGAGCTTTAGCTTTCTCCTTTTAGTTTCCTGTCCAATGCAAGTCTCTGGTTTTTTTTTTTTTTTAAAAAAAAAAAATTCTGGTATTCAAGTCTGTCTAATGCAACAAGTCCTTTGGGGTTCCTTTCGCTTGAAACTAAGATTTCCAGACGATGATTGAGAAGGTTCTGTTGTTCACTAATCCCTCCATTTCAGTGTGAGTTGGATTAGTGCCTCAGGTCTTGGCTCCTCTTGTTGGCTGTTTTTTTTTTATGTTCTCGTATATACTTCATATTTCTCACTAAAAGCTTGTTTTCTTTTCTTTTTTTGCGTGAAGAACTCCATGAATATTGGATACTAGAATGTCATCTTTAATAATTGATGAGCAGAGTATAATTCAGAATCCTGTAATCCTGTTGTATTATGAAAGTATGTTGCTTTTAGATGTACATATCCAACACTATTAAATAATAGAAATTCTCTGGGCATACACATACATTTAAAAATGCATTTTGCATTTGCACATGCAGTGTAATTGATATGCGTTTTATTCGGTAGTCTTATTGGTTGTTTCTAACCTAGTTTTCCTTTGTAGCAAGAGAACTTGAACCGTTTCTTTTTCCTATGAATTTGTTTCTTACGCCCTACAACGATGTTGCTTAACAGGTAGCCTAGATATGATTCTCAATGGATGCACCACACCCACTGGGTGCTTCTTCTCAAATTCCAGGTTATGTATTCCTAGCCGCTCTGCCACTTCACGTACCCCTGATTATAGTATTCGAGCAGCTGGAATTAGGAGTTCATGGGAACCTCGTTTAGCGAATCGGACATGTTTTTATAGAGGTGCATATGTAACCTTTAACAATCTTTGTTTACCTTTTATTTTATCTCTATTTCAGAAATAAAAAACAATTATAACTACTGTGGAGACATTAGTGTAAGAAATTCTTATCTGACTTTCGTGACACTGGCATCTTAAAGAATCATACCATCACTTTTTTTAGTAGTTGAGTGAATGGTGTGCTTGTTCTAATTCATTATTTTCTGAATTTAGGTCTCTTACCCTTAAACCTACGAGCTGCATCTTCACCTCTCTTAAGCGGGGATCTAGGTGGCTTGCTACATACAATCCCAAGGTTACCAAATCAAAGAAAAATAGGCACGACACCACGAGCAGCAAAAGATGTTCCTACAAGCTTTCGTTTCCCTCCAATGACAACCAAACCGAAATGGTGGTGGAGGACACTAGCATGCCTACCCTATCTAATGCCCCTTCATGAAACGTGGATGTACGGGGAAACCGCATACCATCTACACCCATTTCTGGAAGACTTCGAATTCTGCACTTATCCCTTTCTTGAAGCCATTGGGAGTCTACCAAGTTGGTTCTTGATGGCGTATTTCTTCGTAGCCTATCTAGGAATTGTAAGAAGGAAGGAATGGCCACACTTCTTTAGATTTCACGTAGTCATGGGCATGTTGTTGGAGATTGCCCTGCAAGTTATTGGCACAGTGAGTCGTTGGATGCCCCTTGCAGTCTATTGGGGTAAATTTGGGATGCACTTTTGGACCGCCGTGGCGTTTGCTTACCTGTTCACGGTCTTGGAATGCATACGCTGTGCTCTTGCAGGCATGTATGCTGATATCCCCTTTGTCTGTGATGCAGCCTACATCCAAATTCCATATGATTAAGAACTTGGTGCAAGGAGAATGCGAAAGTAGACATGTAAGTTTTACTTACTGCCCTTGTGAAGTGCAGTCGGAAATAAACGTCGAAACATTCTGAAGATGATCATCTCTCTATTGACTCTTTGGCATTTAGTCTTTTGAGAAAACATGTATCTTTGTCCTTGTAGAAATTGAACAATCTGTATGGAAGAGCAGAGCTTGTGGTGGAAGTAAAGAAGGAAACTTGTGCCCACTACCTTCTGAGGGTATGTATGTTCACTTTAACTATAAACTTCTCTGCTTTCTCTGTGCGCCTTGACTCATAATTTTCTCAAAACCATTTTAATCTTGGAAAGCAATCAACTTTAGCAGGCCTTTGTTTATTCTAAACCGAATGTAAGAACTGTTCTGGTTTATTTCTCCATTTTTTTCTCGTTGCCTGTGCTGGTTTCGATTGTTTTTACATTGTTGAATTCTTTGGTTTTTTTCTTTATCTAGTTTAATTTTCAAATCTGTTAAAAGTATTGCTATTCAATGTTCACATCATATAGCTGATTTGATATCCAATTGATTATGTAGTGTGAAGACAAAAAATTTCCAATTATTGAAATTGGCTGTGCTAGAACGTCCTTGGATATCTGAAAGAAACTCAAAGATGGTGATGGGATTGGTCTGAGTTGTGATTATAAATTAAATTGGTTTGGCCTCTTCATCTCAAAATCAATCGAATCATTTGATTTTTTTTGGAGTAATCCATTGAATTTGATTAGTTTTATTAATTAAATGGATTTGAACCTACCATATTTGCAAAATGCTATACCGAAACTACTGTATACTTGATGTTTTGTGGGGAA

mRNA sequence

ATTTAAAAAAAGAAAATCCGTGTAGAAGCTGCCTCTCTCCTCTATCCTGCCGGCCGCGCAGCACAAGTTCGCAGATTTCACAACTGCCTTCGATGTTTATGTTGGTGTGCATCAGATTCAGGTAGCCTAGATATGATTCTCAATGGATGCACCACACCCACTGGGTGCTTCTTCTCAAATTCCAGGTTATGTATTCCTAGCCGCTCTGCCACTTCACGTACCCCTGATTATAGTATTCGAGCAGCTGGAATTAGGAGTTCATGGGAACCTCGTTTAGCGAATCGGACATGTTTTTATAGAGGTCTCTTACCCTTAAACCTACGAGCTGCATCTTCACCTCTCTTAAGCGGGGATCTAGGTGGCTTGCTACATACAATCCCAAGGTTACCAAATCAAAGAAAAATAGGCACGACACCACGAGCAGCAAAAGATGTTCCTACAAGCTTTCGTTTCCCTCCAATGACAACCAAACCGAAATGGTGGTGGAGGACACTAGCATGCCTACCCTATCTAATGCCCCTTCATGAAACGTGGATGTACGGGGAAACCGCATACCATCTACACCCATTTCTGGAAGACTTCGAATTCTGCACTTATCCCTTTCTTGAAGCCATTGGGAGTCTACCAAGTTGGTTCTTGATGGCGTATTTCTTCGTAGCCTATCTAGGAATTGTAAGAAGGAAGGAATGGCCACACTTCTTTAGATTTCACGTAGTCATGGGCATGTTGTTGGAGATTGCCCTGCAAGTTATTGGCACAGTGAGTCGTTGGATGCCCCTTGCAGTCTATTGGGGTAAATTTGGGATGCACTTTTGGACCGCCGTGGCGTTTGCTTACCTGTTCACGGTCTTGGAATGCATACGCTGTGCTCTTGCAGGCATGTATGCTGATATCCCCTTTGTCTGTGATGCAGCCTACATCCAAATTCCATATGATTAAGAACTTGGTGCAAGGAGAATGCGAAAGTAGACATAAATTGAACAATCTGTATGGAAGAGCAGAGCTTGTGGTGGAAGTAAAGAAGGAAACTTGTGCCCACTACCTTCTGAGGGTATGTATGTTCACTTTAACTATAAACTTCTCTGCTTTCTCTGTGCGCCTTGACTCATAATTTTCTCAAAACCATTTTAATCTTGGAAAGCAATCAACTTTAGCAGGCCTTTGTTTATTCTAAACCGAATGTAAGAACTGTTCTGGTTTATTTCTCCATTTTTTTCTCGTTGCCTGTGCTGGTTTCGATTGTTTTTACATTGTTGAATTCTTTGGTTTTTTTCTTTATCTAGTTTAATTTTCAAATCTGTTAAAAGTATTGCTATTCAATGTTCACATCATATAGCTGATTTGATATCCAATTGATTATGTAGTGTGAAGACAAAAAATTTCCAATTATTGAAATTGGCTGTGCTAGAACGTCCTTGGATATCTGAAAGAAACTCAAAGATGGTGATGGGATTGGTCTGAGTTGTGATTATAAATTAAATTGGTTTGGCCTCTTCATCTCAAAATCAATCGAATCATTTGATTTTTTTTGGAGTAATCCATTGAATTTGATTAGTTTTATTAATTAAATGGATTTGAACCTACCATATTTGCAAAATGCTATACCGAAACTACTGTATACTTGATGTTTTGTGGGGAA

Coding sequence (CDS)

ATGATTCTCAATGGATGCACCACACCCACTGGGTGCTTCTTCTCAAATTCCAGGTTATGTATTCCTAGCCGCTCTGCCACTTCACGTACCCCTGATTATAGTATTCGAGCAGCTGGAATTAGGAGTTCATGGGAACCTCGTTTAGCGAATCGGACATGTTTTTATAGAGGTCTCTTACCCTTAAACCTACGAGCTGCATCTTCACCTCTCTTAAGCGGGGATCTAGGTGGCTTGCTACATACAATCCCAAGGTTACCAAATCAAAGAAAAATAGGCACGACACCACGAGCAGCAAAAGATGTTCCTACAAGCTTTCGTTTCCCTCCAATGACAACCAAACCGAAATGGTGGTGGAGGACACTAGCATGCCTACCCTATCTAATGCCCCTTCATGAAACGTGGATGTACGGGGAAACCGCATACCATCTACACCCATTTCTGGAAGACTTCGAATTCTGCACTTATCCCTTTCTTGAAGCCATTGGGAGTCTACCAAGTTGGTTCTTGATGGCGTATTTCTTCGTAGCCTATCTAGGAATTGTAAGAAGGAAGGAATGGCCACACTTCTTTAGATTTCACGTAGTCATGGGCATGTTGTTGGAGATTGCCCTGCAAGTTATTGGCACAGTGAGTCGTTGGATGCCCCTTGCAGTCTATTGGGGTAAATTTGGGATGCACTTTTGGACCGCCGTGGCGTTTGCTTACCTGTTCACGGTCTTGGAATGCATACGCTGTGCTCTTGCAGGCATGTATGCTGATATCCCCTTTGTCTGTGATGCAGCCTACATCCAAATTCCATATGATTAA

Protein sequence

MILNGCTTPTGCFFSNSRLCIPSRSATSRTPDYSIRAAGIRSSWEPRLANRTCFYRGLLPLNLRAASSPLLSGDLGGLLHTIPRLPNQRKIGTTPRAAKDVPTSFRFPPMTTKPKWWWRTLACLPYLMPLHETWMYGETAYHLHPFLEDFEFCTYPFLEAIGSLPSWFLMAYFFVAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKFGMHFWTAVAFAYLFTVLECIRCALAGMYADIPFVCDAAYIQIPYD

Homology

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BLAST of Sed0021948 vs. NCBI nr
Match: XP_022151562.1 (protein TIC 20-I, chloroplastic isoform X2 [Momordica charantia])

HSP 1 Score: 503.1 bits (1294), Expect = 1.5e-138
Identity = 237/268 (88.43%), Postives = 249/268 (92.91%), Query Frame = 0


Query: 1   MILNGCTTPTGCFFSNSRLCIPSRSATSRTPDYSIRAAGIRSSWEPRLANRTCFYRGLLP 60
           MILNGCTTPTG  FSNSR CIPSRS  SRTP  S++ A IRSSWEPRL ++TCF +GLLP
Sbjct: 1   MILNGCTTPTGWCFSNSRFCIPSRSTASRTPGCSMQTARIRSSWEPRLEHQTCFSKGLLP 60

Query: 61  LNLRAASSPLLSGDLGGLLHTIPRLPNQRKIGTTPRAAKDVPTSFRFPPMTTKPKWWWRT 120
           L LRAASSPLLSGDLGGLLHTIPRLP Q++IG TP+A+KDVPTSFRFPPMTTKPKWWWRT
Sbjct: 61  LKLRAASSPLLSGDLGGLLHTIPRLPRQKRIGMTPQASKDVPTSFRFPPMTTKPKWWWRT 120

Query: 121 LACLPYLMPLHETWMYGETAYHLHPFLEDFEFCTYPFLEAIGSLPSWFLMAYFFVAYLGI 180
           LACLPYLMPLHETWMY ETAYHLHPFLEDFEF TYPFL AIG LPSWFLMAYFFVAYLG+
Sbjct: 121 LACLPYLMPLHETWMYAETAYHLHPFLEDFEFATYPFLGAIGRLPSWFLMAYFFVAYLGV 180

Query: 181 VRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKFGMHFWTAVAFAYLFTVL 240
           VRRKEWPHF RFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKFGMHFWTAV+FAYLFTVL
Sbjct: 181 VRRKEWPHFLRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKFGMHFWTAVSFAYLFTVL 240

Query: 241 ECIRCALAGMYADIPFVCDAAYIQIPYD 269
           ECIRCALAGMYADIPF+CDAAYIQIPYD
Sbjct: 241 ECIRCALAGMYADIPFICDAAYIQIPYD 268

[Close]

BLAST of Sed0021948 vs. NCBI nr
Match: XP_038875339.1 (protein TIC 20-I, chloroplastic [Benincasa hispida] >XP_038875340.1 protein TIC 20-I, chloroplastic [Benincasa hispida] >XP_038875341.1 protein TIC 20-I, chloroplastic [Benincasa hispida] >XP_038875342.1 protein TIC 20-I, chloroplastic [Benincasa hispida])

HSP 1 Score: 499.6 bits (1285), Expect = 1.7e-137
Identity = 238/269 (88.48%), Postives = 250/269 (92.94%), Query Frame = 0


Query: 1   MILNGCTTPTGCFFSNSRLCIPSRSATSRTPDYSIRAAGIRSSWEPRLANRTCFYRGLLP 60
           MILNGCTTPTGCFFSNS+L IP RSA SR+P  S++ A IRSSWEPRL ++TC+YRGLLP
Sbjct: 1   MILNGCTTPTGCFFSNSKLSIPGRSAISRSPHCSMQTASIRSSWEPRLEHQTCYYRGLLP 60

Query: 61  LNLRAASSPLLSGDLGGLLHTIPRLPNQRKIG-TTPRAAKDVPTSFRFPPMTTKPKWWWR 120
           L LRAASSPLLSGDLGGLLH IPRLP Q+KIG TTP+AAKDVPTSFRFPPMTTKPKWWWR
Sbjct: 61  LKLRAASSPLLSGDLGGLLHMIPRLPRQKKIGMTTPQAAKDVPTSFRFPPMTTKPKWWWR 120

Query: 121 TLACLPYLMPLHETWMYGETAYHLHPFLEDFEFCTYPFLEAIGSLPSWFLMAYFFVAYLG 180
           TLACLPYLMPLHETWMY ETAYHLHPFLE+FE  TYPFL AIG LPSWFLMAYFFVAYLG
Sbjct: 121 TLACLPYLMPLHETWMYAETAYHLHPFLEEFELFTYPFLGAIGRLPSWFLMAYFFVAYLG 180

Query: 181 IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKFGMHFWTAVAFAYLFTV 240
           +VRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGK GMHFWTAVAFAYLFTV
Sbjct: 181 VVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYLFTV 240

Query: 241 LECIRCALAGMYADIPFVCDAAYIQIPYD 269
           LE IRCALAGMYAD+PFVCDAAYIQIPYD
Sbjct: 241 LESIRCALAGMYADVPFVCDAAYIQIPYD 269

[Close]

BLAST of Sed0021948 vs. NCBI nr
Match: XP_022151560.1 (protein TIC 20-I, chloroplastic isoform X1 [Momordica charantia] >XP_022151561.1 protein TIC 20-I, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 498.4 bits (1282), Expect = 3.8e-137
Identity = 237/269 (88.10%), Postives = 249/269 (92.57%), Query Frame = 0


Query: 1   MILNGCTTPTGCFFSNSRLCIPSRSATSRTPDYSIRAAGIRSSWEPRLANRTCFYR-GLL 60
           MILNGCTTPTG  FSNSR CIPSRS  SRTP  S++ A IRSSWEPRL ++TCF + GLL
Sbjct: 1   MILNGCTTPTGWCFSNSRFCIPSRSTASRTPGCSMQTARIRSSWEPRLEHQTCFSKVGLL 60

Query: 61  PLNLRAASSPLLSGDLGGLLHTIPRLPNQRKIGTTPRAAKDVPTSFRFPPMTTKPKWWWR 120
           PL LRAASSPLLSGDLGGLLHTIPRLP Q++IG TP+A+KDVPTSFRFPPMTTKPKWWWR
Sbjct: 61  PLKLRAASSPLLSGDLGGLLHTIPRLPRQKRIGMTPQASKDVPTSFRFPPMTTKPKWWWR 120

Query: 121 TLACLPYLMPLHETWMYGETAYHLHPFLEDFEFCTYPFLEAIGSLPSWFLMAYFFVAYLG 180
           TLACLPYLMPLHETWMY ETAYHLHPFLEDFEF TYPFL AIG LPSWFLMAYFFVAYLG
Sbjct: 121 TLACLPYLMPLHETWMYAETAYHLHPFLEDFEFATYPFLGAIGRLPSWFLMAYFFVAYLG 180

Query: 181 IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKFGMHFWTAVAFAYLFTV 240
           +VRRKEWPHF RFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKFGMHFWTAV+FAYLFTV
Sbjct: 181 VVRRKEWPHFLRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKFGMHFWTAVSFAYLFTV 240

Query: 241 LECIRCALAGMYADIPFVCDAAYIQIPYD 269
           LECIRCALAGMYADIPF+CDAAYIQIPYD
Sbjct: 241 LECIRCALAGMYADIPFICDAAYIQIPYD 269

[Close]

BLAST of Sed0021948 vs. NCBI nr
Match: XP_023006630.1 (protein TIC 20-I, chloroplastic-like [Cucurbita maxima] >XP_023006631.1 protein TIC 20-I, chloroplastic-like [Cucurbita maxima] >XP_023006632.1 protein TIC 20-I, chloroplastic-like [Cucurbita maxima] >XP_023006633.1 protein TIC 20-I, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 477.2 bits (1227), Expect = 9.0e-131
Identity = 227/269 (84.39%), Postives = 243/269 (90.33%), Query Frame = 0


Query: 1   MILNGCTTPTGCFFSNSRLCIPSRSATSRTPDYSIR-AAGIRSSWEPRLANRTCFYRGLL 60
           MILNGCTTPTG FFSNSRL IP+RSA SR+PD S+  AA IRSS EP L ++TC YRG+ 
Sbjct: 1   MILNGCTTPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVF 60

Query: 61  PLNLRAASSPLLSGDLGGLLHTIPRLPNQRKIGTTPRAAKDVPTSFRFPPMTTKPKWWWR 120
           PL L A SS LLSGDLGGLLHTIPRLP +R +G TPRAAKD+PTS+RFPPMTTKPKWWWR
Sbjct: 61  PLKLGAGSSHLLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWR 120

Query: 121 TLACLPYLMPLHETWMYGETAYHLHPFLEDFEFCTYPFLEAIGSLPSWFLMAYFFVAYLG 180
           TLACLPYLMP HETWMY ETAYHLHPFLEDFEF TYPFLEA+G LP+WFL+AYFF+AYLG
Sbjct: 121 TLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLG 180

Query: 181 IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKFGMHFWTAVAFAYLFTV 240
           IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGK GMHFWTAV+FAYLFTV
Sbjct: 181 IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTV 240

Query: 241 LECIRCALAGMYADIPFVCDAAYIQIPYD 269
           LE +RCALAGMYADIPF CDAAYIQIPYD
Sbjct: 241 LEAVRCALAGMYADIPFFCDAAYIQIPYD 269

[Close]

BLAST of Sed0021948 vs. NCBI nr
Match: XP_008459737.1 (PREDICTED: protein TIC 20-I, chloroplastic-like [Cucumis melo] >KAA0039751.1 protein TIC 20-I [Cucumis melo var. makuwa] >TYK24746.1 protein TIC 20-I [Cucumis melo var. makuwa])

HSP 1 Score: 476.5 bits (1225), Expect = 1.5e-130
Identity = 219/268 (81.72%), Postives = 243/268 (90.67%), Query Frame = 0


Query: 1   MILNGCTTPTGCFFSNSRLCIPSRSATSRTPDYSIRAAGIRSSWEPRLANRTCFYRGLLP 60
           MILNGCTTPTGCFFSNS+L IPSRS+  R P  S + A IRSSWEP L ++TC+Y GLLP
Sbjct: 1   MILNGCTTPTGCFFSNSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP 60

Query: 61  LNLRAASSPLLSGDLGGLLHTIPRLPNQRKIGTTPRAAKDVPTSFRFPPMTTKPKWWWRT 120
           L L AASSPLLSGDLGGLL TIPRLP ++ I  TPRA+KDVPTS+R+PPMTTKPKWWWRT
Sbjct: 61  LKLNAASSPLLSGDLGGLLSTIPRLPGKKNISMTPRASKDVPTSYRYPPMTTKPKWWWRT 120

Query: 121 LACLPYLMPLHETWMYGETAYHLHPFLEDFEFCTYPFLEAIGSLPSWFLMAYFFVAYLGI 180
           LACLPYLMPLHETWMYGETAYHLHPFLEDFEF TYPFL AIG LPSWFL+AYFFVAYLG+
Sbjct: 121 LACLPYLMPLHETWMYGETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLIAYFFVAYLGV 180

Query: 181 VRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKFGMHFWTAVAFAYLFTVL 240
           VRRKEWPHF RFHVVMGML+EI+LQVIGT+SRW+P++VYWGK GMHFWTAV FAY+FTVL
Sbjct: 181 VRRKEWPHFLRFHVVMGMLMEISLQVIGTMSRWLPISVYWGKLGMHFWTAVCFAYMFTVL 240

Query: 241 ECIRCALAGMYADIPFVCDAAYIQIPYD 269
           EC+RCALAGMYAD+PFVC+AAYIQIP+D
Sbjct: 241 ECMRCALAGMYADVPFVCNAAYIQIPFD 268

[Close]

BLAST of Sed0021948 vs. ExPASy Swiss-Prot
Match: Q8GZ79 (Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-I PE=1 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 6.7e-105
Identity = 196/274 (71.53%), Postives = 219/274 (79.93%), Query Frame = 0


Query: 2   ILNGCTTPTGCFFSNSRLCIPS--RSATSRTPDYSIRAA--GIRSSW--EPRLANRTCFY 61
           ++ G +TP+     +SR    S  R+A  +T  Y  R++   +++SW   P   N     
Sbjct: 1   MITGYSTPSAHVLMSSRAFKSSSYRAAAGQTQHYLARSSLPVVKNSWGSPPSPFNELPRV 60

Query: 62  RGLLPLN-LRAASSPLLSGDLGGLLHTIPRLPNQRKIGTTPRAAKDVPTSFRFPPMTTKP 121
              +PL+ L A+SS LL+G+ G L  T+P LP +RK   TPRA+KDVP+SFRFPPMT KP
Sbjct: 61  SRGVPLSYLSASSSLLLNGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSFRFPPMTKKP 120

Query: 122 KWWWRTLACLPYLMPLHETWMYGETAYHLHPFLEDFEFCTYPFLEAIGSLPSWFLMAYFF 181
           +WWWRTLACLPYLMPLHETWMY ETAYHLHPFLEDFEF TYPFL AIG LPSWFLMAYFF
Sbjct: 121 QWWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFF 180

Query: 182 VAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKFGMHFWTAVAFA 241
           VAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVS+WMPL VYWGKFGMHFWTAVAFA
Sbjct: 181 VAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLGVYWGKFGMHFWTAVAFA 240

Query: 242 YLFTVLECIRCALAGMYADIPFVCDAAYIQIPYD 269
           YLFTVLE IRCALAGMYADIPFVCDAAYIQIPYD
Sbjct: 241 YLFTVLESIRCALAGMYADIPFVCDAAYIQIPYD 274

[Close]

BLAST of Sed0021948 vs. ExPASy Swiss-Prot
Match: Q9ZST8 (Protein TIC 20, chloroplastic OS=Pisum sativum OX=3888 GN=TIC20 PE=1 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 1.0e-84
Identity = 162/272 (59.56%), Postives = 187/272 (68.75%), Query Frame = 0


Query: 1   MILNGCTTPTGCFFSNSRLC----IPSRSATSRTPDYSIRAAGIRSSWEPRLANRTCFYR 60
           MI NG T   G     S LC    IP++ A S           IRS W   L N+    R
Sbjct: 1   MIQNGGTVSQG-----SVLCYACQIPAKVAVS----------SIRSFWGHSLENKP---R 60

Query: 61  GLLPLNLRAASSPLLSGDLGGLLHTIPRLPNQRKIGTTPRAAKDVPTSFRFPPMTTKPKW 120
           G+   ++ A SS LLSG    L  TIP LP   K  TTPRA KD  + FRFPPMT KP+W
Sbjct: 61  GMTFTDMSATSSLLLSGGQNFLSRTIPVLPTLHKSSTTPRATKD-SSGFRFPPMTKKPRW 120

Query: 121 WWRTLACLPYLMPLHETWMYGETAYHLHPFLEDFEFCTYPFLEAIGSLPSWFLMAYFFVA 180
           WWRTL+C+PYL+P H+ WMY  TAYHLHPF+  F+  TYPFL AIG+LP W L+AYF +A
Sbjct: 121 WWRTLSCIPYLLPFHQAWMYARTAYHLHPFIPYFQPMTYPFLMAIGTLPRWSLIAYFLIA 180

Query: 181 YLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKFGMHFWTAVAFAYL 240
           YL IVRRKEWPHFFRFHV +GML+EIALQV G VSRWMP + YWGK GMHFWT   F +L
Sbjct: 181 YLTIVRRKEWPHFFRFHVAVGMLIEIALQVTGIVSRWMPRSFYWGKLGMHFWTTAFFVFL 240

Query: 241 FTVLECIRCALAGMYADIPFVCDAAYIQIPYD 269
           FT +ECIRCAL GMYAD+PFVCDAAYIQIP++
Sbjct: 241 FTTIECIRCALVGMYADVPFVCDAAYIQIPHE 253

[Close]

BLAST of Sed0021948 vs. ExPASy Swiss-Prot
Match: Q9ZQZ9 (Protein TIC 20-IV, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-IV PE=2 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.2e-39
Identity = 85/190 (44.74%), Postives = 116/190 (61.05%), Query Frame = 0


Query: 77  GLLHTIPRLPNQRKIGTTPRAAKDVPTSFRFPPMTTKPKWWWRTLACLPYLMPLHETWMY 136
           GL    P L   R+     R AKD     + P +  +P+WWWRTLAC+PYL+ L      
Sbjct: 85  GLPPLAPGLRRHRRPIEPARVAKDDFFKIKLPKIAERPEWWWRTLACVPYLISL----QI 144

Query: 137 GETAYHLHPFLEDFEF---CTYPFLEAIGSLPSWFLMAYFFVAYLGIVRRKEWPHFFRFH 196
            +  +++ PFLE  +      Y    AI   P+WF M Y ++ Y+ +V+ KE PH+ RFH
Sbjct: 145 SDVGFYVQPFLEKHDAIGDMIYFIPGAINRWPTWFFMVYCYLGYMWVVKNKELPHYLRFH 204

Query: 197 VVMGMLLEIALQVIGTVSRWMPLAVYWGKFGMHFWTAVAFAYLFTVLECIRCALAGMYAD 256
           ++MGMLLE ALQVI   S + PL  + G+FGM++W A+ F Y+  +LECIRCALAG+YA 
Sbjct: 205 MMMGMLLETALQVIWCTSNFFPLIHFKGRFGMYYWMAIGFTYICLLLECIRCALAGVYAQ 264

Query: 257 IPFVCDAAYI 264
           IPF+ DAA I
Sbjct: 265 IPFMTDAASI 270

[Close]

BLAST of Sed0021948 vs. ExPASy Swiss-Prot
Match: P73387 (Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll1737 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.6e-05
Identity = 42/154 (27.27%), Postives = 70/154 (45.45%), Query Frame = 0


Query: 119 RTLACLPYLMPLHETWMYGETAYHLHPFLEDFEFCTYPFLEAIGSLPSWFLMAYFFVAYL 178
           R  + L Y++PL + +M+G       P L+       P L+     P +     F V ++
Sbjct: 12  RFFSALIYVIPLIDAFMFGGFLLQQFPVLQIIYLPIMPLLQFYYQFP-FASFIIFIVLFM 71

Query: 179 GIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKFGMHFWTAVAFAYLFT 238
            +VR     HF RF+ +  +L+ I L + G +  ++   V    FG    T   + + F 
Sbjct: 72  AVVRNNNISHFIRFNAMQAILIGILLSLFGLIVAYVIQPV----FGQGLVTETLYNFAFL 131

Query: 239 -VLEC----IRCALAGMYADIPFVCDAAYIQIPY 268
             L C    I  ++ G YA+IP + DAAY Q+ +
Sbjct: 132 GALACGFFGIVQSVLGRYAEIPTISDAAYSQVRF 160

[Close]

BLAST of Sed0021948 vs. ExPASy TrEMBL
Match: A0A6J1DDV0 (Protein TIC 20 OS=Momordica charantia OX=3673 GN=LOC111019474 PE=3 SV=1)

HSP 1 Score: 503.1 bits (1294), Expect = 7.4e-139
Identity = 237/268 (88.43%), Postives = 249/268 (92.91%), Query Frame = 0


Query: 1   MILNGCTTPTGCFFSNSRLCIPSRSATSRTPDYSIRAAGIRSSWEPRLANRTCFYRGLLP 60
           MILNGCTTPTG  FSNSR CIPSRS  SRTP  S++ A IRSSWEPRL ++TCF +GLLP
Sbjct: 1   MILNGCTTPTGWCFSNSRFCIPSRSTASRTPGCSMQTARIRSSWEPRLEHQTCFSKGLLP 60

Query: 61  LNLRAASSPLLSGDLGGLLHTIPRLPNQRKIGTTPRAAKDVPTSFRFPPMTTKPKWWWRT 120
           L LRAASSPLLSGDLGGLLHTIPRLP Q++IG TP+A+KDVPTSFRFPPMTTKPKWWWRT
Sbjct: 61  LKLRAASSPLLSGDLGGLLHTIPRLPRQKRIGMTPQASKDVPTSFRFPPMTTKPKWWWRT 120

Query: 121 LACLPYLMPLHETWMYGETAYHLHPFLEDFEFCTYPFLEAIGSLPSWFLMAYFFVAYLGI 180
           LACLPYLMPLHETWMY ETAYHLHPFLEDFEF TYPFL AIG LPSWFLMAYFFVAYLG+
Sbjct: 121 LACLPYLMPLHETWMYAETAYHLHPFLEDFEFATYPFLGAIGRLPSWFLMAYFFVAYLGV 180

Query: 181 VRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKFGMHFWTAVAFAYLFTVL 240
           VRRKEWPHF RFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKFGMHFWTAV+FAYLFTVL
Sbjct: 181 VRRKEWPHFLRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKFGMHFWTAVSFAYLFTVL 240

Query: 241 ECIRCALAGMYADIPFVCDAAYIQIPYD 269
           ECIRCALAGMYADIPF+CDAAYIQIPYD
Sbjct: 241 ECIRCALAGMYADIPFICDAAYIQIPYD 268

[Close]

BLAST of Sed0021948 vs. ExPASy TrEMBL
Match: A0A6J1DBI9 (Protein TIC 20 OS=Momordica charantia OX=3673 GN=LOC111019474 PE=3 SV=1)

HSP 1 Score: 498.4 bits (1282), Expect = 1.8e-137
Identity = 237/269 (88.10%), Postives = 249/269 (92.57%), Query Frame = 0


Query: 1   MILNGCTTPTGCFFSNSRLCIPSRSATSRTPDYSIRAAGIRSSWEPRLANRTCFYR-GLL 60
           MILNGCTTPTG  FSNSR CIPSRS  SRTP  S++ A IRSSWEPRL ++TCF + GLL
Sbjct: 1   MILNGCTTPTGWCFSNSRFCIPSRSTASRTPGCSMQTARIRSSWEPRLEHQTCFSKVGLL 60

Query: 61  PLNLRAASSPLLSGDLGGLLHTIPRLPNQRKIGTTPRAAKDVPTSFRFPPMTTKPKWWWR 120
           PL LRAASSPLLSGDLGGLLHTIPRLP Q++IG TP+A+KDVPTSFRFPPMTTKPKWWWR
Sbjct: 61  PLKLRAASSPLLSGDLGGLLHTIPRLPRQKRIGMTPQASKDVPTSFRFPPMTTKPKWWWR 120

Query: 121 TLACLPYLMPLHETWMYGETAYHLHPFLEDFEFCTYPFLEAIGSLPSWFLMAYFFVAYLG 180
           TLACLPYLMPLHETWMY ETAYHLHPFLEDFEF TYPFL AIG LPSWFLMAYFFVAYLG
Sbjct: 121 TLACLPYLMPLHETWMYAETAYHLHPFLEDFEFATYPFLGAIGRLPSWFLMAYFFVAYLG 180

Query: 181 IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKFGMHFWTAVAFAYLFTV 240
           +VRRKEWPHF RFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKFGMHFWTAV+FAYLFTV
Sbjct: 181 VVRRKEWPHFLRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKFGMHFWTAVSFAYLFTV 240

Query: 241 LECIRCALAGMYADIPFVCDAAYIQIPYD 269
           LECIRCALAGMYADIPF+CDAAYIQIPYD
Sbjct: 241 LECIRCALAGMYADIPFICDAAYIQIPYD 269

[Close]

BLAST of Sed0021948 vs. ExPASy TrEMBL
Match: A0A6J1KYA1 (Protein TIC 20 OS=Cucurbita maxima OX=3661 GN=LOC111499301 PE=3 SV=1)

HSP 1 Score: 477.2 bits (1227), Expect = 4.4e-131
Identity = 227/269 (84.39%), Postives = 243/269 (90.33%), Query Frame = 0


Query: 1   MILNGCTTPTGCFFSNSRLCIPSRSATSRTPDYSIR-AAGIRSSWEPRLANRTCFYRGLL 60
           MILNGCTTPTG FFSNSRL IP+RSA SR+PD S+  AA IRSS EP L ++TC YRG+ 
Sbjct: 1   MILNGCTTPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVF 60

Query: 61  PLNLRAASSPLLSGDLGGLLHTIPRLPNQRKIGTTPRAAKDVPTSFRFPPMTTKPKWWWR 120
           PL L A SS LLSGDLGGLLHTIPRLP +R +G TPRAAKD+PTS+RFPPMTTKPKWWWR
Sbjct: 61  PLKLGAGSSHLLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWR 120

Query: 121 TLACLPYLMPLHETWMYGETAYHLHPFLEDFEFCTYPFLEAIGSLPSWFLMAYFFVAYLG 180
           TLACLPYLMP HETWMY ETAYHLHPFLEDFEF TYPFLEA+G LP+WFL+AYFF+AYLG
Sbjct: 121 TLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLG 180

Query: 181 IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKFGMHFWTAVAFAYLFTV 240
           IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGK GMHFWTAV+FAYLFTV
Sbjct: 181 IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTV 240

Query: 241 LECIRCALAGMYADIPFVCDAAYIQIPYD 269
           LE +RCALAGMYADIPF CDAAYIQIPYD
Sbjct: 241 LEAVRCALAGMYADIPFFCDAAYIQIPYD 269

[Close]

BLAST of Sed0021948 vs. ExPASy TrEMBL
Match: A0A5A7TDM5 (Protein TIC 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003090 PE=3 SV=1)

HSP 1 Score: 476.5 bits (1225), Expect = 7.4e-131
Identity = 219/268 (81.72%), Postives = 243/268 (90.67%), Query Frame = 0


Query: 1   MILNGCTTPTGCFFSNSRLCIPSRSATSRTPDYSIRAAGIRSSWEPRLANRTCFYRGLLP 60
           MILNGCTTPTGCFFSNS+L IPSRS+  R P  S + A IRSSWEP L ++TC+Y GLLP
Sbjct: 1   MILNGCTTPTGCFFSNSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP 60

Query: 61  LNLRAASSPLLSGDLGGLLHTIPRLPNQRKIGTTPRAAKDVPTSFRFPPMTTKPKWWWRT 120
           L L AASSPLLSGDLGGLL TIPRLP ++ I  TPRA+KDVPTS+R+PPMTTKPKWWWRT
Sbjct: 61  LKLNAASSPLLSGDLGGLLSTIPRLPGKKNISMTPRASKDVPTSYRYPPMTTKPKWWWRT 120

Query: 121 LACLPYLMPLHETWMYGETAYHLHPFLEDFEFCTYPFLEAIGSLPSWFLMAYFFVAYLGI 180
           LACLPYLMPLHETWMYGETAYHLHPFLEDFEF TYPFL AIG LPSWFL+AYFFVAYLG+
Sbjct: 121 LACLPYLMPLHETWMYGETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLIAYFFVAYLGV 180

Query: 181 VRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKFGMHFWTAVAFAYLFTVL 240
           VRRKEWPHF RFHVVMGML+EI+LQVIGT+SRW+P++VYWGK GMHFWTAV FAY+FTVL
Sbjct: 181 VRRKEWPHFLRFHVVMGMLMEISLQVIGTMSRWLPISVYWGKLGMHFWTAVCFAYMFTVL 240

Query: 241 ECIRCALAGMYADIPFVCDAAYIQIPYD 269
           EC+RCALAGMYAD+PFVC+AAYIQIP+D
Sbjct: 241 ECMRCALAGMYADVPFVCNAAYIQIPFD 268

[Close]

BLAST of Sed0021948 vs. ExPASy TrEMBL
Match: A0A1S3CAY7 (Protein TIC 20 OS=Cucumis melo OX=3656 GN=LOC103498780 PE=3 SV=1)

HSP 1 Score: 476.5 bits (1225), Expect = 7.4e-131
Identity = 219/268 (81.72%), Postives = 243/268 (90.67%), Query Frame = 0


Query: 1   MILNGCTTPTGCFFSNSRLCIPSRSATSRTPDYSIRAAGIRSSWEPRLANRTCFYRGLLP 60
           MILNGCTTPTGCFFSNS+L IPSRS+  R P  S + A IRSSWEP L ++TC+Y GLLP
Sbjct: 1   MILNGCTTPTGCFFSNSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP 60

Query: 61  LNLRAASSPLLSGDLGGLLHTIPRLPNQRKIGTTPRAAKDVPTSFRFPPMTTKPKWWWRT 120
           L L AASSPLLSGDLGGLL TIPRLP ++ I  TPRA+KDVPTS+R+PPMTTKPKWWWRT
Sbjct: 61  LKLNAASSPLLSGDLGGLLSTIPRLPGKKNISMTPRASKDVPTSYRYPPMTTKPKWWWRT 120

Query: 121 LACLPYLMPLHETWMYGETAYHLHPFLEDFEFCTYPFLEAIGSLPSWFLMAYFFVAYLGI 180
           LACLPYLMPLHETWMYGETAYHLHPFLEDFEF TYPFL AIG LPSWFL+AYFFVAYLG+
Sbjct: 121 LACLPYLMPLHETWMYGETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLIAYFFVAYLGV 180

Query: 181 VRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKFGMHFWTAVAFAYLFTVL 240
           VRRKEWPHF RFHVVMGML+EI+LQVIGT+SRW+P++VYWGK GMHFWTAV FAY+FTVL
Sbjct: 181 VRRKEWPHFLRFHVVMGMLMEISLQVIGTMSRWLPISVYWGKLGMHFWTAVCFAYMFTVL 240

Query: 241 ECIRCALAGMYADIPFVCDAAYIQIPYD 269
           EC+RCALAGMYAD+PFVC+AAYIQIP+D
Sbjct: 241 ECMRCALAGMYADVPFVCNAAYIQIPFD 268

[Close]

BLAST of Sed0021948 vs. TAIR 10
Match: AT1G04940.1 (translocon at the inner envelope membrane of chloroplasts 20 )

HSP 1 Score: 381.7 bits (979), Expect = 4.8e-106
Identity = 196/274 (71.53%), Postives = 219/274 (79.93%), Query Frame = 0


Query: 2   ILNGCTTPTGCFFSNSRLCIPS--RSATSRTPDYSIRAA--GIRSSW--EPRLANRTCFY 61
           ++ G +TP+     +SR    S  R+A  +T  Y  R++   +++SW   P   N     
Sbjct: 1   MITGYSTPSAHVLMSSRAFKSSSYRAAAGQTQHYLARSSLPVVKNSWGSPPSPFNELPRV 60

Query: 62  RGLLPLN-LRAASSPLLSGDLGGLLHTIPRLPNQRKIGTTPRAAKDVPTSFRFPPMTTKP 121
              +PL+ L A+SS LL+G+ G L  T+P LP +RK   TPRA+KDVP+SFRFPPMT KP
Sbjct: 61  SRGVPLSYLSASSSLLLNGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSFRFPPMTKKP 120

Query: 122 KWWWRTLACLPYLMPLHETWMYGETAYHLHPFLEDFEFCTYPFLEAIGSLPSWFLMAYFF 181
           +WWWRTLACLPYLMPLHETWMY ETAYHLHPFLEDFEF TYPFL AIG LPSWFLMAYFF
Sbjct: 121 QWWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFF 180

Query: 182 VAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKFGMHFWTAVAFA 241
           VAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVS+WMPL VYWGKFGMHFWTAVAFA
Sbjct: 181 VAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLGVYWGKFGMHFWTAVAFA 240

Query: 242 YLFTVLECIRCALAGMYADIPFVCDAAYIQIPYD 269
           YLFTVLE IRCALAGMYADIPFVCDAAYIQIPYD
Sbjct: 241 YLFTVLESIRCALAGMYADIPFVCDAAYIQIPYD 274

[Close]

BLAST of Sed0021948 vs. TAIR 10
Match: AT1G04945.3 (HIT-type Zinc finger family protein )

HSP 1 Score: 339.0 bits (868), Expect = 3.6e-93
Identity = 176/254 (69.29%), Postives = 199/254 (78.35%), Query Frame = 0


Query: 2   ILNGCTTPTGCFFSNSRLCIPS--RSATSRTPDYSIRAA--GIRSSW--EPRLANRTCFY 61
           ++ G +TP+     +SR    S  R+A  +T  Y  R++   +++SW   P   N     
Sbjct: 1   MITGYSTPSAHVLMSSRAFKSSSYRAAAGQTQHYLARSSLPVVKNSWGSPPSPFNELPRV 60

Query: 62  RGLLPLN-LRAASSPLLSGDLGGLLHTIPRLPNQRKIGTTPRAAKDVPTSFRFPPMTTKP 121
              +PL+ L A+SS LL+G+ G L  T+P LP +RK   TPRA+KDVP+SFRFPPMT KP
Sbjct: 61  SRGVPLSYLSASSSLLLNGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSFRFPPMTKKP 120

Query: 122 KWWWRTLACLPYLMPLHETWMYGETAYHLHPFLEDFEFCTYPFLEAIGSLPSWFLMAYFF 181
           +WWWRTLACLPYLMPLHETWMY ETAYHLHPFLEDFEF TYPFL AIG LPSWFLMAYFF
Sbjct: 121 QWWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFF 180

Query: 182 VAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKFGMHFWTAVAFA 241
           VAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVS+WMPL VYWGKFGMHFWTAVAFA
Sbjct: 181 VAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLGVYWGKFGMHFWTAVAFA 240

Query: 242 YLFTVLECIRCALA 249
           YLFTVLE IRCALA
Sbjct: 241 YLFTVLESIRCALA 254

[Close]

BLAST of Sed0021948 vs. TAIR 10
Match: AT4G03320.1 (translocon at the inner envelope membrane of chloroplasts 20-IV )

HSP 1 Score: 164.1 bits (414), Expect = 1.6e-40
Identity = 85/190 (44.74%), Postives = 116/190 (61.05%), Query Frame = 0


Query: 77  GLLHTIPRLPNQRKIGTTPRAAKDVPTSFRFPPMTTKPKWWWRTLACLPYLMPLHETWMY 136
           GL    P L   R+     R AKD     + P +  +P+WWWRTLAC+PYL+ L      
Sbjct: 85  GLPPLAPGLRRHRRPIEPARVAKDDFFKIKLPKIAERPEWWWRTLACVPYLISL----QI 144

Query: 137 GETAYHLHPFLEDFEF---CTYPFLEAIGSLPSWFLMAYFFVAYLGIVRRKEWPHFFRFH 196
            +  +++ PFLE  +      Y    AI   P+WF M Y ++ Y+ +V+ KE PH+ RFH
Sbjct: 145 SDVGFYVQPFLEKHDAIGDMIYFIPGAINRWPTWFFMVYCYLGYMWVVKNKELPHYLRFH 204

Query: 197 VVMGMLLEIALQVIGTVSRWMPLAVYWGKFGMHFWTAVAFAYLFTVLECIRCALAGMYAD 256
           ++MGMLLE ALQVI   S + PL  + G+FGM++W A+ F Y+  +LECIRCALAG+YA 
Sbjct: 205 MMMGMLLETALQVIWCTSNFFPLIHFKGRFGMYYWMAIGFTYICLLLECIRCALAGVYAQ 264

Query: 257 IPFVCDAAYI 264
           IPF+ DAA I
Sbjct: 265 IPFMTDAASI 270

The following BLAST results are available for this feature:

BLAST of Sed0021948 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151562.1	1.5e-138	88.43	protein TIC 20-I, chloroplastic isoform X2 [Momordica charantia]	[more]
XP_038875339.1	1.7e-137	88.48	protein TIC 20-I, chloroplastic [Benincasa hispida] >XP_038875340.1 protein TIC ...	[more]
XP_022151560.1	3.8e-137	88.10	protein TIC 20-I, chloroplastic isoform X1 [Momordica charantia] >XP_022151561.1...	[more]
XP_023006630.1	9.0e-131	84.39	protein TIC 20-I, chloroplastic-like [Cucurbita maxima] >XP_023006631.1 protein ...	[more]
XP_008459737.1	1.5e-130	81.72	PREDICTED: protein TIC 20-I, chloroplastic-like [Cucumis melo] >KAA0039751.1 pro...	[more]

BLAST of Sed0021948 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GZ79	6.7e-105	71.53	Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-I PE=1 ...	[more]
Q9ZST8	1.0e-84	59.56	Protein TIC 20, chloroplastic OS=Pisum sativum OX=3888 GN=TIC20 PE=1 SV=1	[more]
Q9ZQZ9	2.2e-39	44.74	Protein TIC 20-IV, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-IV PE=...	[more]
P73387	1.6e-05	27.27	Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 ...	[more]

BLAST of Sed0021948 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DDV0	7.4e-139	88.43	Protein TIC 20 OS=Momordica charantia OX=3673 GN=LOC111019474 PE=3 SV=1	[more]
A0A6J1DBI9	1.8e-137	88.10	Protein TIC 20 OS=Momordica charantia OX=3673 GN=LOC111019474 PE=3 SV=1	[more]
A0A6J1KYA1	4.4e-131	84.39	Protein TIC 20 OS=Cucurbita maxima OX=3661 GN=LOC111499301 PE=3 SV=1	[more]
A0A5A7TDM5	7.4e-131	81.72	Protein TIC 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00309...	[more]
A0A1S3CAY7	7.4e-131	81.72	Protein TIC 20 OS=Cucumis melo OX=3656 GN=LOC103498780 PE=3 SV=1	[more]

BLAST of Sed0021948 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04940.1	4.8e-106	71.53	translocon at the inner envelope membrane of chloroplasts 20	[more]
AT1G04945.3	3.6e-93	69.29	HIT-type Zinc finger family protein	[more]
AT4G03320.1	1.6e-40	44.74	translocon at the inner envelope membrane of chloroplasts 20-IV	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005691	Chloroplast protein import component Tic20	TIGRFAM	TIGR00994	TIGR00994	coord: 1..268 e-value: 1.2E-122 score: 406.8
IPR005691	Chloroplast protein import component Tic20	PFAM	PF16166	TIC20	coord: 87..261 e-value: 3.9E-73 score: 245.1
IPR005691	Chloroplast protein import component Tic20	PANTHER	PTHR33510	PROTEIN TIC 20-II, CHLOROPLASTIC	coord: 1..268
None	No IPR available	PANTHER	PTHR33510:SF9	HIT-TYPE ZINC FINGER FAMILY PROTEIN-RELATED	coord: 1..268

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0021948.1	Sed0021948.1	mRNA
Sed0021948.2	Sed0021948.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0016021	integral component of membrane