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Sed0021737 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTTTGGGGACGAAATTTCATATGAATTGATTCAGTTGGGTTTATAATTGATGTTTTTTCCAAAAAAATTTCACCCCTCATGCCTTTCAACCTTCGTCATCTGAGCTCTATGGTCTTCAAATTCAGGGTATCGTGGCGCCATCAAGACCATCCCTCGGAATTTGCTTCCGTTGATTGACGAACTTAGAAACTACTACAGATGTCAAGTCCCAGTTTCTCGAGTGGCCAATCATGGCGGTTCCCATGGCAAACCTTTCCGCCTGCAACAACATCGCACGGCCGCCACATTTTCCTCGCTCTCGCAGCCATAACGCTCACAATTTCAAACTCCATTCCCAAATCTGCTGCCACTGCCATGTCGTTCATCGGAAGATGGACTCCTTTACGTTTGGCCCTGGTCTACCACAGTCGCTTCGTTCCCTTCACTACACAAAGCGGAATTCACCTACTTGCTCCGCTGCTGAGAAACCGGAAATCAGGTTCTTTTCTTTCTCTGCAATGCTATTTATTTCAATTCTATTCACAATTCTATGTCTAAGCCCTTGAAATTTGGTTGTTTTAGTTGATTTTATTTCATTGGCCTTTCAGATGAAGAACCGTAATGCAATTAATTGTGGGCTCGGTTGTATTTATGGTTTCCATAGATATGTTATTTTAATTTTGTACATTTAGAGTGTCCATAATCCATATGTATGCTTGTTCGACTGCCAAGAATTGGCATCAATTTTTGGAATCTTCGGGCTTTGATCATGCCTGGATTCTTGTATGGGTGACTTCTTCCTGTTATATGCCTTGAGCTACAAAGCCTTAATGGGTTTCTCATATATCTTATATGATAACAACTTGGTTTGCCTGCATAAATTTATACACTCAAGGTGTTTAATCAACACGCATAAATGTTCCCATTTGGATAATTGAGTTAAGAGTGAATGTATTCAAGACCATGTAATTAGGATTTAATATCCTACGTGTTACTTCGAGAACCAATATAGGGGGTGGCTTAGGAAGTTGTTCAGTGAGAATAGTTGTAGTGCAATTAAGCTAGTCCAAACACTCACACCAAGATTGAACTGAGCAGAACTGCTAATGAACTAATTACACCACAAGAGTAACCATTATATCATAAATCGCATTGAAATGTTTAATGAGGAGAATAACTTATCCTAGTCTTCATTTCTTTGTATTTTTTACACATTATCCGAGTATTTTTTCAGATTACAAACGATGGTAGTTGCATTCTTCTAATGTTGCATTTTGTTTATGGTAGTTTAGACTCGAGGGGCAAAGGGGGCTGGTGTGGTGTTATTGGTTATCTTCTAATGTATTGTCTTATTTTCATTGCACCTGAAATGAGGCTCTGTGTAACCTTATACGGTTTTTTCTTAGTTCCACCGCCAAGATAAGAAGTGAAGTTCTCTCTCCTTTTCGGTCGGTTCGAATGTTTTTCTATCTTGCTTTCATTGCCAGCGGTACATTGGGAGGACTGATAGCAACCACTCGATTGCTTGCTGCATTGGCAAACTCATCAAGAGCTGACGAAGTCCCTGATATTGTAAAAGGACTTGGAATAGACTTTGGAGCCGTAGCTTTTTTTGCTTTTCTTTATTTCAGAGAGAACAATGCGAAAAATGCTCAGTTGGCAAGACTGTCGAGAGAAGAAACCCTTTCCAATTTAAAGCTTCGAGTGGACCAAAACAAGGTTATTCCTATCAGCACTCTGCGTGGGATTGCTCGTCTGGTTATTTGTGTTGGCCCTGAATCCTTTATCATGGAAGCTTTTAAATCAAGCGAGCCTTTCACCGAACAACTTCTCGAACGGGGCGTGTTAGTCGTACCCTTTGCCACAGATGCCAGTTCACTTAGTTTTGAGTTTGATGAAAGTGAAGACGTGAAGGATCTAACCACCAAAAGAAAAAGACTCTGGCGCTTGACTCCAGTTTATATGCTCGAGTGGTCGGCGTAAGTAATTATAACTACTATCTGTTGTTGCATTGTTGCCCCCTCCTCTCCCTTCTCATTTGCCTTTACATGTGAATAATAGGTGGTTAGATGAACAAAAGAAGTTGGCTGGAGTTTCCTCTGATTCTCCCGTGTAAGTTGTCCAACTCCACCTTGTTTAACTTAGAATTCTAATTGATGAAGTAAAATGGTTGCCTCTTTAATGCTTTAAACTCCCATTCAAGGTGTGGCAATAATTTTTTTTTATTTAGTTCTTTTAATGAAATATATCATTTAAATTACAAGTTTAGTCCCTAAAATTTTAAGTTTGTGTGTAATAGGTCCATAAAGTTTACACAGTTTTTAATAGGCCAGTAAACTTTAAAAGTCCGATAACTTTAATAGTATCTAACTAGTCCTTGATGTATTCAACATTCAAGGACTTAGTAGACAGTAAACTGAAAGTTTAGGCAATTCCTATTAGATAAAAGTCGAAAGTTCAAGGACCTATTGTAATTTTTTTAAAGCTTAGGGACCTATTAACCACAAACAAATCTTTCTTAGGGACTAAATTTATGATTTAAACTTCATTTAATCATAAGATATCCCATTTGTAGACCTCATAGTTGGTATATGTGTCGTGTAAGCTGCACAGGGAAAAAGAAAAGAAAAGAAAATACTTTGCAGAATCCATGCCAAAGCTAGTTCATCTTCCAGAGGTTTAATAATGAATTTTAATCGTTTGTAGCTGGTTATGTTAATATTTGTTCTTGCAGGTATCTATCTCTGCGAATGGATGGCCGTGTTCGTGGTAGCGGTGTTGGTTATCCTCCATGGAATGCTCTTGTTGCACAATTACCACCTGTAAAAGGACTATGGTCTGGTCTTTTTGATGGAATGGATGGGAGAGTTCTTTGAAGAAAACACTTGCTCTTCTGCAAAGTTGGTACTCTTTTTACCGAACCTGTTGCCCTTGCATGCTTTTATTATTCATTTAAAACCATAGGACCCTTCTTCTCGTGGTCTGTGTCAGTGTTTTAAAATGCGCAAGACGTACCAAAAGGCGAGAGCTTTTTTACTTAAGGTGCACTATATAAAAAAAAAAAAAAAATTTATATATTTGTGTGTATACACAATAAAAACACTTTTCATGGACATAAATGAAGTTTTAACCAAGAATAGTATATAAAACATACATAATATTCAACTATCAACCTTTGCGTGCCTCGAATAACGTAGTACGGGGATCTAAAACACAAAAGAAATAAAAAAATCTCACGAGACACATGCCTTTTAGGACCCGGGGCTTCACATATGATGCCATAAGGCGTGCACCTCATTACATGCAAGGCGAGGCGCTAGAGGTGGGACTTGAGTCTAGGCTTGCCTAGGCACATGCCTGGGCGCACCTTTTAAAACCCTGGTCTGTGTTCATATTTCTGCCATTTTACTGAGGGGTGAAGTTAAAATTTGGTAAAATATCATCTTGGTGCTTATATTTTGGGTCTCATTTCATTTTTCTCCGTACTTGCAATAAATCTTAACATAATTATAATAATTCTGGTATAGGACACACAATATGAATATGTTTCGAACTTTATAAATTGTAAGCTAAGACCAAGAGCCTGAAGGTTTTTGGAAAAAGTTAAGAACAAACCAATAGGATGAACTAATTTCAAGATAAATTACAAATTGGAGAGTGACCTAGTCATCAAGACTAAGAGGACATTGAAAAACTAAGAGGTGATAGATTCAATCCATGGTGACAACTTATTTAGGAATTAATTTTGTATGAGTTTGCTTGACATTCAAATGTTGTAGGATTAAACAGACTAGTCCAATGCATGCAAGCTGATTCGGACAATCGTAGATATCAAAAAAGAAATTATAATAATTTTGTGATGTCCTTTTGAGCTGGCACCAAACTACCTAAATCAAGTCATATTTGATTTAACTTTCAAGGAACTGCAGATTCTCTTACCAACTTTTTAAGAAATACTGTCAATAATGTTATCACGTCAGTAATTTGGCCTTTTTAAAAAAAGTTCTATTCAATGTCAAACTTTATGGCAGAATCGTATCCGATAATTCTAACCATTGGTAATTATTGAATTATGTTAAACTACCAATCAATCCAAAAGCCTAAGTTGATAGATTTGGGTAAATTTAATTATGTCAACTTACACTCTACCTCACTTGTGAGCTTTGAAATTTGAGAAATGCCCTACAAGTGGAATTTAATTTTTAATTGGAGAGGAAACGACTTGGCAGGAATTTGAATTCATGACCTCCTGCTCTTATACCATGTTTGAATTATGTTAAATCATCAATCAATCTAAAATCTTAAGTTGATGGATTGTGGTAAATTTAATTGTATCAGCCAACAGTAAGTTTCTTGCTTCAAACATGAGCATTATACTAAAATTTTCTTGTTTTCAAACTACTGCTTAAACAGGTACTCTGCAATGGAGCTTCTCAAAACCATTACCATGGAGGACGTATTTTCATGCTGGACTGCCTAAGAAATGGAACTGAATCTCATGACTGCAGAAATACAGGTTTTTATAAATAAAGAGATAAAATGAGAGATTTATCCTATTTGAAATCGTGAAATGTTTCGATCTAGAATCCAACATTCTTAGTCATTAGCTATTTTCTTCGTAATTATATTGTACAGCTGAAGTTGGTCAATTGATTGATAGTTGAATGTGTATTTAAGCGCACTCGGTAAAAGGTAAATAACGTGATCAAGCAGTTTTATTCAA CTTTGGGGACGAAATTTCATATGAATTGATTCAGTTGGGTTTATAATTGATGTTTTTTCCAAAAAAATTTCACCCCTCATGCCTTTCAACCTTCGTCATCTGAGCTCTATGGTCTTCAAATTCAGGGTATCGTGGCGCCATCAAGACCATCCCTCGGAATTTGCTTCCGTTGATTGACGAACTTAGAAACTACTACAGATGTCAAGTCCCAGTTTCTCGAGTGGCCAATCATGGCGGTTCCCATGGCAAACCTTTCCGCCTGCAACAACATCGCACGGCCGCCACATTTTCCTCGCTCTCGCAGCCATAACGCTCACAATTTCAAACTCCATTCCCAAATCTGCTGCCACTGCCATGTCGTTCATCGGAAGATGGACTCCTTTACGTTTGGCCCTGGTCTACCACAGTCGCTTCGTTCCCTTCACTACACAAAGCGGAATTCACCTACTTGCTCCGCTGCTGAGAAACCGGAAATCAGTTCCACCGCCAAGATAAGAAGTGAAGTTCTCTCTCCTTTTCGGTCGGTTCGAATGTTTTTCTATCTTGCTTTCATTGCCAGCGGTACATTGGGAGGACTGATAGCAACCACTCGATTGCTTGCTGCATTGGCAAACTCATCAAGAGCTGACGAAGTCCCTGATATTGTAAAAGGACTTGGAATAGACTTTGGAGCCGTAGCTTTTTTTGCTTTTCTTTATTTCAGAGAGAACAATGCGAAAAATGCTCAGTTGGCAAGACTGTCGAGAGAAGAAACCCTTTCCAATTTAAAGCTTCGAGTGGACCAAAACAAGGTTATTCCTATCAGCACTCTGCGTGGGATTGCTCGTCTGGTTATTTGTGTTGGCCCTGAATCCTTTATCATGGAAGCTTTTAAATCAAGCGAGCCTTTCACCGAACAACTTCTCGAACGGGGCGTGTTAGTCGTACCCTTTGCCACAGATGCCAGTTCACTTAGTTTTGAGTTTGATGAAAGTGAAGACGTGAAGGATCTAACCACCAAAAGAAAAAGACTCTGGCGCTTGACTCCAGTTTATATGCTCGAGTGGTCGGCGTGGTTAGATGAACAAAAGAAGTTGGCTGGAGTTTCCTCTGATTCTCCCGTGTATCTATCTCTGCGAATGGATGGCCGTGTTCGTGGTAGCGGTGTTGGTTATCCTCCATGGAATGCTCTTGTTGCACAATTACCACCTGTAAAAGGACTATGGTCTGGTCTTTTTGATGGAATGGATGGGAGAGTTCTTTGAAGAAAACACTTGCTCTTCTGCAAAGTACTCTGCAATGGAGCTTCTCAAAACCATTACCATGGAGGACGTATTTTCATGCTGGACTGCCTAAGAAATGGAACTGAATCTCATGACTGCAGAAATACAGGTTTTTATAAATAAAGAGATAAAATGAGAGATTTATCCTATTTGAAATCGTGAAATGTTTCGATCTAGAATCCAACATTCTTAGTCATTAGCTATTTTCTTCGTAATTATATTGTACAGCTGAAGTTGGTCAATTGATTGATAGTTGAATGTGTATTTAAGCGCACTCGGTAAAAGGTAAATAACGTGATCAAGCAGTTTTATTCAA ATGGCGGTTCCCATGGCAAACCTTTCCGCCTGCAACAACATCGCACGGCCGCCACATTTTCCTCGCTCTCGCAGCCATAACGCTCACAATTTCAAACTCCATTCCCAAATCTGCTGCCACTGCCATGTCGTTCATCGGAAGATGGACTCCTTTACGTTTGGCCCTGGTCTACCACAGTCGCTTCGTTCCCTTCACTACACAAAGCGGAATTCACCTACTTGCTCCGCTGCTGAGAAACCGGAAATCAGTTCCACCGCCAAGATAAGAAGTGAAGTTCTCTCTCCTTTTCGGTCGGTTCGAATGTTTTTCTATCTTGCTTTCATTGCCAGCGGTACATTGGGAGGACTGATAGCAACCACTCGATTGCTTGCTGCATTGGCAAACTCATCAAGAGCTGACGAAGTCCCTGATATTGTAAAAGGACTTGGAATAGACTTTGGAGCCGTAGCTTTTTTTGCTTTTCTTTATTTCAGAGAGAACAATGCGAAAAATGCTCAGTTGGCAAGACTGTCGAGAGAAGAAACCCTTTCCAATTTAAAGCTTCGAGTGGACCAAAACAAGGTTATTCCTATCAGCACTCTGCGTGGGATTGCTCGTCTGGTTATTTGTGTTGGCCCTGAATCCTTTATCATGGAAGCTTTTAAATCAAGCGAGCCTTTCACCGAACAACTTCTCGAACGGGGCGTGTTAGTCGTACCCTTTGCCACAGATGCCAGTTCACTTAGTTTTGAGTTTGATGAAAGTGAAGACGTGAAGGATCTAACCACCAAAAGAAAAAGACTCTGGCGCTTGACTCCAGTTTATATGCTCGAGTGGTCGGCGTGGTTAGATGAACAAAAGAAGTTGGCTGGAGTTTCCTCTGATTCTCCCGTGTATCTATCTCTGCGAATGGATGGCCGTGTTCGTGGTAGCGGTGTTGGTTATCCTCCATGGAATGCTCTTGTTGCACAATTACCACCTGTAAAAGGACTATGGTCTGGTCTTTTTGATGGAATGGATGGGAGAGTTCTTTGA MAVPMANLSACNNIARPPHFPRSRSHNAHNFKLHSQICCHCHVVHRKMDSFTFGPGLPQSLRSLHYTKRNSPTCSAAEKPEISSTAKIRSEVLSPFRSVRMFFYLAFIASGTLGGLIATTRLLAALANSSRADEVPDIVKGLGIDFGAVAFFAFLYFRENNAKNAQLARLSREETLSNLKLRVDQNKVIPISTLRGIARLVICVGPESFIMEAFKSSEPFTEQLLERGVLVVPFATDASSLSFEFDESEDVKDLTTKRKRLWRLTPVYMLEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLFDGMDGRVL Homology
BLAST of Sed0021737 vs. NCBI nr
Match: XP_023554665.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023554666.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 556.6 bits (1433), Expect = 1.5e-154 Identity = 282/339 (83.19%), Postives = 303/339 (89.38%), Query Frame = 0
BLAST of Sed0021737 vs. NCBI nr
Match: XP_022967293.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita maxima] >XP_022967294.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita maxima]) HSP 1 Score: 555.8 bits (1431), Expect = 2.5e-154 Identity = 281/339 (82.89%), Postives = 303/339 (89.38%), Query Frame = 0
BLAST of Sed0021737 vs. NCBI nr
Match: XP_022963501.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita moschata] >XP_022963502.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita moschata]) HSP 1 Score: 553.9 bits (1426), Expect = 9.5e-154 Identity = 281/339 (82.89%), Postives = 302/339 (89.09%), Query Frame = 0
BLAST of Sed0021737 vs. NCBI nr
Match: XP_038888898.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida] >XP_038888899.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida]) HSP 1 Score: 551.2 bits (1419), Expect = 6.2e-153 Identity = 285/341 (83.58%), Postives = 304/341 (89.15%), Query Frame = 0
BLAST of Sed0021737 vs. NCBI nr
Match: XP_022131239.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Momordica charantia] >XP_022131240.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Momordica charantia]) HSP 1 Score: 548.5 bits (1412), Expect = 4.0e-152 Identity = 280/339 (82.60%), Postives = 303/339 (89.38%), Query Frame = 0
BLAST of Sed0021737 vs. ExPASy Swiss-Prot
Match: Q9SRY4 (Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LPA1 PE=1 SV=1) HSP 1 Score: 134.8 bits (338), Expect = 1.8e-30 Identity = 84/265 (31.70%), Postives = 127/265 (47.92%), Query Frame = 0
BLAST of Sed0021737 vs. ExPASy TrEMBL
Match: A0A6J1HWD0 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466857 PE=4 SV=1) HSP 1 Score: 555.8 bits (1431), Expect = 1.2e-154 Identity = 281/339 (82.89%), Postives = 303/339 (89.38%), Query Frame = 0
BLAST of Sed0021737 vs. ExPASy TrEMBL
Match: A0A6J1HGA1 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111463810 PE=4 SV=1) HSP 1 Score: 553.9 bits (1426), Expect = 4.6e-154 Identity = 281/339 (82.89%), Postives = 302/339 (89.09%), Query Frame = 0
BLAST of Sed0021737 vs. ExPASy TrEMBL
Match: A0A6J1BP58 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111004502 PE=4 SV=1) HSP 1 Score: 548.5 bits (1412), Expect = 1.9e-152 Identity = 280/339 (82.60%), Postives = 303/339 (89.38%), Query Frame = 0
BLAST of Sed0021737 vs. ExPASy TrEMBL
Match: A0A5D3BG35 (Protein LOW PSII ACCUMULATION 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00670 PE=4 SV=1) HSP 1 Score: 528.9 bits (1361), Expect = 1.6e-146 Identity = 277/341 (81.23%), Postives = 299/341 (87.68%), Query Frame = 0
BLAST of Sed0021737 vs. ExPASy TrEMBL
Match: A0A1S3BHU5 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489822 PE=4 SV=1) HSP 1 Score: 528.9 bits (1361), Expect = 1.6e-146 Identity = 277/341 (81.23%), Postives = 299/341 (87.68%), Query Frame = 0
BLAST of Sed0021737 vs. TAIR 10
Match: AT4G28740.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3493 (InterPro:IPR021883); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT1G02910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 366.7 bits (940), Expect = 2.0e-101 Identity = 197/344 (57.27%), Postives = 246/344 (71.51%), Query Frame = 0
BLAST of Sed0021737 vs. TAIR 10
Match: AT1G02910.1 (tetratricopeptide repeat (TPR)-containing protein ) HSP 1 Score: 134.8 bits (338), Expect = 1.3e-31 Identity = 84/265 (31.70%), Postives = 127/265 (47.92%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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