Sed0021480 (gene) Chayote v1

Overview


Name	Sed0021480
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING-H2 finger protein ATL40-like
Location	LG04: 44044006 .. 44045028 (+)
RNA-Seq Expression	Sed0021480
Synteny	Sed0021480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCAATTTCTGATCCCAAAAATAAAGAATCCCATTATATTACCAAACTCAAATTCAGCAAAATCCCACAAAATAAGCAATTCAAGTTCTTCTCTCTTTGTTCTGTTCTGTTCTTTCTCTAAAACCAGACGACACTGCCCATGTCCAATCCGTCGTCTAAACCGCCGCTCGACGGCGGCGACGCCCACCGATCCGGCCCGGACCCATACAATTTCAGCAACAAAATTATGCTAACCGCCATAATTTCCCTTTCTCTCGTCGTCCTCCTCGTCATCGCCCTCCACATTTACGCCCGCTACGCCCTCCGCCGCCACGCACGGCGGCAGGCCGCCCTCCGCCGCCTCGGAATCCTCGCCCTCGTCGACTCCCGAGACCCTCCCCTGCTTCACCGGCGATCCGGCCTCGACCCCCTTGTCATGGCGTCGCTGCCGGTCGTCGTTTTCAAGCACCAATCGGAAAACCCAGATCCCGCCGGCGCCGGCGTGGAGTGCGCCGTGTGTCTCAGCGCCGTCGAGGACGGCGAGGAGGCCAGAATTTTGCCCAATTGTAAACATGTCTTCCATTTGGAATGTATTGATAAATGGTTTGGATCGCATTCCACGTGTCCGATTTGCAGGACGGAGGCTGCGCCGGTGATTCGACCGGAGCCACGGGAGGCTCCGGCGACGGAGACGGCGGATAGCAGCGGTGGGTCGGTCTCCCGATTAAGTTCTTTCAGACGGATTCTAAGTAGAGAAAGGTCTTCGAGAAGAATTCAACCTTGTGTACGGCAAAATGAAAACGACGTCGTTCAAGATTTGGAAACGCAGTAAATATCATTGTAAACCAATTGATTTTTTTTTTGGTGCTATATTTTTCTCCTTGACTATTTCAAATACTAAATTTATCACTATACTGAATTAAAGAAAGAAACAATACATTTTTAAAGTAGAGTTGAATATTTTTTACTTTCCACTCCACCATTGAACAAAAATAGAAATGAAATTATTGGATGGATGGAAGCTATTTTAAATTTATATTCAAA

mRNA sequence

CTCAATTTCTGATCCCAAAAATAAAGAATCCCATTATATTACCAAACTCAAATTCAGCAAAATCCCACAAAATAAGCAATTCAAGTTCTTCTCTCTTTGTTCTGTTCTGTTCTTTCTCTAAAACCAGACGACACTGCCCATGTCCAATCCGTCGTCTAAACCGCCGCTCGACGGCGGCGACGCCCACCGATCCGGCCCGGACCCATACAATTTCAGCAACAAAATTATGCTAACCGCCATAATTTCCCTTTCTCTCGTCGTCCTCCTCGTCATCGCCCTCCACATTTACGCCCGCTACGCCCTCCGCCGCCACGCACGGCGGCAGGCCGCCCTCCGCCGCCTCGGAATCCTCGCCCTCGTCGACTCCCGAGACCCTCCCCTGCTTCACCGGCGATCCGGCCTCGACCCCCTTGTCATGGCGTCGCTGCCGGTCGTCGTTTTCAAGCACCAATCGGAAAACCCAGATCCCGCCGGCGCCGGCGTGGAGTGCGCCGTGTGTCTCAGCGCCGTCGAGGACGGCGAGGAGGCCAGAATTTTGCCCAATTGTAAACATGTCTTCCATTTGGAATGTATTGATAAATGGTTTGGATCGCATTCCACGTGTCCGATTTGCAGGACGGAGGCTGCGCCGGTGATTCGACCGGAGCCACGGGAGGCTCCGGCGACGGAGACGGCGGATAGCAGCGGTGGGTCGGTCTCCCGATTAAGTTCTTTCAGACGGATTCTAAGTAGAGAAAGGTCTTCGAGAAGAATTCAACCTTGTGTACGGCAAAATGAAAACGACGTCGTTCAAGATTTGGAAACGCAGTAAATATCATTGTAAACCAATTGATTTTTTTTTTGGTGCTATATTTTTCTCCTTGACTATTTCAAATACTAAATTTATCACTATACTGAATTAAAGAAAGAAACAATACATTTTTAAAGTAGAGTTGAATATTTTTTACTTTCCACTCCACCATTGAACAAAAATAGAAATGAAATTATTGGATGGATGGAAGCTATTTTAAATTTATATTCAAA

Coding sequence (CDS)

ATGTCCAATCCGTCGTCTAAACCGCCGCTCGACGGCGGCGACGCCCACCGATCCGGCCCGGACCCATACAATTTCAGCAACAAAATTATGCTAACCGCCATAATTTCCCTTTCTCTCGTCGTCCTCCTCGTCATCGCCCTCCACATTTACGCCCGCTACGCCCTCCGCCGCCACGCACGGCGGCAGGCCGCCCTCCGCCGCCTCGGAATCCTCGCCCTCGTCGACTCCCGAGACCCTCCCCTGCTTCACCGGCGATCCGGCCTCGACCCCCTTGTCATGGCGTCGCTGCCGGTCGTCGTTTTCAAGCACCAATCGGAAAACCCAGATCCCGCCGGCGCCGGCGTGGAGTGCGCCGTGTGTCTCAGCGCCGTCGAGGACGGCGAGGAGGCCAGAATTTTGCCCAATTGTAAACATGTCTTCCATTTGGAATGTATTGATAAATGGTTTGGATCGCATTCCACGTGTCCGATTTGCAGGACGGAGGCTGCGCCGGTGATTCGACCGGAGCCACGGGAGGCTCCGGCGACGGAGACGGCGGATAGCAGCGGTGGGTCGGTCTCCCGATTAAGTTCTTTCAGACGGATTCTAAGTAGAGAAAGGTCTTCGAGAAGAATTCAACCTTGTGTACGGCAAAATGAAAACGACGTCGTTCAAGATTTGGAAACGCAGTAA

Protein sequence

MSNPSSKPPLDGGDAHRSGPDPYNFSNKIMLTAIISLSLVVLLVIALHIYARYALRRHARRQAALRRLGILALVDSRDPPLLHRRSGLDPLVMASLPVVVFKHQSENPDPAGAGVECAVCLSAVEDGEEARILPNCKHVFHLECIDKWFGSHSTCPICRTEAAPVIRPEPREAPATETADSSGGSVSRLSSFRRILSRERSSRRIQPCVRQNENDVVQDLETQ

Homology

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BLAST of Sed0021480 vs. NCBI nr
Match: XP_038877602.1 (RING-H2 finger protein ATL40-like [Benincasa hispida])

HSP 1 Score: 343.6 bits (880), Expect = 1.3e-90
Identity = 180/225 (80.00%), Postives = 193/225 (85.78%), Query Frame = 0


Query: 5   SSKPPLDGGDAH-RSGP-----DPYNFSNKIMLTAIISLSLVVLLVIALHIYARYALRRH 64
           S+ P  D GD +   GP     +PY+ +NKIMLTAIISLSLVVLLVIALHIYARYALRR 
Sbjct: 4   SANPSFDDGDGYIFFGPAHPHRNPYDLNNKIMLTAIISLSLVVLLVIALHIYARYALRRQ 63

Query: 65  ARRQAALRRLGILALVDSRDPPLLHRRSGLDPLVMASLPVVVFKHQSENPDPAGAGVECA 124
           ARRQA LRRLGILALVDS DPPL   RSGLDPLVMAS+PV+VFKHQSENPDP+GA VECA
Sbjct: 64  ARRQAVLRRLGILALVDSGDPPLPPSRSGLDPLVMASMPVIVFKHQSENPDPSGAAVECA 123

Query: 125 VCLSAVEDGEEARILPNCKHVFHLECIDKWFGSHSTCPICRTEAAPVIRPEPREAPATET 184
           VCLS +EDGE ARILPNCKHVFHLECIDKWFGSHSTCPICRTEAAP+I PEPREAPA   
Sbjct: 124 VCLSGIEDGETARILPNCKHVFHLECIDKWFGSHSTCPICRTEAAPMILPEPREAPAAAV 183

Query: 185 ADSSGGSVSRLSSFRRILSRERSSRRIQPCVRQNENDVVQDLETQ 224
           A+  GGS SRLSSFRRILSRERSSRRIQPCVRQ+ ND VQDLE+Q
Sbjct: 184 AEGGGGSSSRLSSFRRILSRERSSRRIQPCVRQSRNDDVQDLESQ 228

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BLAST of Sed0021480 vs. NCBI nr
Match: XP_016900708.1 (PREDICTED: RING-H2 finger protein ATL40-like [Cucumis melo] >KAA0061641.1 RING-H2 finger protein ATL40-like [Cucumis melo var. makuwa] >TYK05865.1 RING-H2 finger protein ATL40-like [Cucumis melo var. makuwa])

HSP 1 Score: 332.0 bits (850), Expect = 3.9e-87
Identity = 174/224 (77.68%), Postives = 189/224 (84.38%), Query Frame = 0


Query: 5   SSKPPLDGGDAHRSGP-----DPYNFSNKIMLTAIISLSLVVLLVIALHIYARYALRRHA 64
           S+ P  D GD +  GP     +PY+ +NKIMLTAIISLSLVVLLVIALHIYARYALRRHA
Sbjct: 4   SANPSFDDGDIY-FGPSHPHRNPYDLNNKIMLTAIISLSLVVLLVIALHIYARYALRRHA 63

Query: 65  RRQAALRRLGILALVDSRDPPLLHRRSGLDPLVMASLPVVVFKHQSENPDPAGAGVECAV 124
           RRQA LRRLGILALVDS DP L   RSGLDPLVMAS+PVVVFKHQSENP+P+G  VECAV
Sbjct: 64  RRQAVLRRLGILALVDSSDPHLPPSRSGLDPLVMASMPVVVFKHQSENPEPSGGAVECAV 123

Query: 125 CLSAVEDGEEARILPNCKHVFHLECIDKWFGSHSTCPICRTEAAPVIRPEPREAPATETA 184
           CLSA+ DGE ARILPNCKHVFH+ECIDKWFGSHSTCPICRTEAAP++ PEPRE PA E  
Sbjct: 124 CLSAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRTEAAPMMLPEPREGPAAEVG 183

Query: 185 DSSGGSVSRLSSFRRILSRERSSRRIQPCVRQNENDVVQDLETQ 224
           +S GGS SRLSSFRRILSRERSS RIQPCV Q+ ND V DLE+Q
Sbjct: 184 ESGGGSSSRLSSFRRILSRERSSLRIQPCVFQHRNDAVPDLESQ 226

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BLAST of Sed0021480 vs. NCBI nr
Match: XP_022930874.1 (RING-H2 finger protein ATL40-like [Cucurbita moschata])

HSP 1 Score: 322.0 bits (824), Expect = 4.0e-84
Identity = 175/223 (78.48%), Postives = 183/223 (82.06%), Query Frame = 0


Query: 6   SKPPLDGGDA-----HRSGPDPYNFSNKIMLTAIISLSLVVLLVIALHIYARYALRRHAR 65
           S    D GD+     HR   +PYN +N+IMLTAIISLSLVVLLVIALHIYARYALRRHAR
Sbjct: 2   SASSFDAGDSPFWVDHRPNRNPYNLNNRIMLTAIISLSLVVLLVIALHIYARYALRRHAR 61

Query: 66  RQAALRRLGILALVDSRDPPLLHRRSGLDPLVMASLPVVVFKHQSENPDPAGAGVECAVC 125
           RQA LRRLGILALVDS D P   R SGLDPLVMASLPVVVFKHQ ENP    A VECAVC
Sbjct: 62  RQAVLRRLGILALVDSSDLPRPPRHSGLDPLVMASLPVVVFKHQLENP----AAVECAVC 121

Query: 126 LSAVEDGEEARILPNCKHVFHLECIDKWFGSHSTCPICRTEAAPVIRPEPREAPATETAD 185
           L AVEDGEEAR+LPNCKH FHLECIDKWFG HSTCP CRTEAAP+IRPEPREAP    A+
Sbjct: 122 LCAVEDGEEARVLPNCKHTFHLECIDKWFGLHSTCPNCRTEAAPMIRPEPREAP---VAE 181

Query: 186 SSGGSVSRLSSFRRILSRERSSRRIQPCVRQNENDVVQDLETQ 224
           S GGS SRLSSFRRILSRERSSRRIQPCVR+N ND VQDLE Q
Sbjct: 182 SGGGSSSRLSSFRRILSRERSSRRIQPCVRENGNDDVQDLERQ 217

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BLAST of Sed0021480 vs. NCBI nr
Match: XP_023529863.1 (RING-H2 finger protein ATL40-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 320.5 bits (820), Expect = 1.2e-83
Identity = 177/229 (77.29%), Postives = 185/229 (80.79%), Query Frame = 0


Query: 6   SKPPLDGGDA-----HRSGPDPYNFSNKIMLTAIISLSLVVLLVIALHIYARYALRRHAR 65
           S    DGGD+     HR   +PYN +N+IMLTAIISLSLVVLLVIALHIYARYALRRHAR
Sbjct: 66  SASSFDGGDSPFWVDHRPNRNPYNLNNRIMLTAIISLSLVVLLVIALHIYARYALRRHAR 125

Query: 66  RQAALRR------LGILALVDSRDPPLLHRRSGLDPLVMASLPVVVFKHQSENPDPAGAG 125
           RQA LRR      LGILALVDS D P   R SGLDPLVMASLPVVVFKHQ ENP    A 
Sbjct: 126 RQAVLRRQAALRHLGILALVDSSDLPRPPRHSGLDPLVMASLPVVVFKHQLENP----AA 185

Query: 126 VECAVCLSAVEDGEEARILPNCKHVFHLECIDKWFGSHSTCPICRTEAAPVIRPEPREAP 185
           VECAVCL AVEDGEEAR+LPNCKH FHLECIDKWFG HSTCPICRTEAAP+IRPEPREAP
Sbjct: 186 VECAVCLCAVEDGEEARVLPNCKHTFHLECIDKWFGLHSTCPICRTEAAPMIRPEPREAP 245

Query: 186 ATETADSSGGSVSRLSSFRRILSRERSSRRIQPCVRQNENDVVQDLETQ 224
               A+S GGS SRLSSFRRILSRERSSRRIQPCVR+N ND VQDLE Q
Sbjct: 246 ---VAESGGGSSSRLSSFRRILSRERSSRRIQPCVRENGNDDVQDLERQ 287

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BLAST of Sed0021480 vs. NCBI nr
Match: KAG6589265.1 (E3 ubiquitin-protein ligase ATL41, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022964.1 E3 ubiquitin-protein ligase ATL41, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 319.7 bits (818), Expect = 2.0e-83
Identity = 174/223 (78.03%), Postives = 182/223 (81.61%), Query Frame = 0


Query: 6   SKPPLDGGDA-----HRSGPDPYNFSNKIMLTAIISLSLVVLLVIALHIYARYALRRHAR 65
           S    D GD+     HR   +PYN +N+IMLTAIISLSLVVLLVIALHIYARYALRRHAR
Sbjct: 2   SASSFDAGDSPFWVDHRPNRNPYNLNNRIMLTAIISLSLVVLLVIALHIYARYALRRHAR 61

Query: 66  RQAALRRLGILALVDSRDPPLLHRRSGLDPLVMASLPVVVFKHQSENPDPAGAGVECAVC 125
           RQA LRRLGILALVDS D P   R SGLDPLVMASLPVVVFKHQ EN     A VECAVC
Sbjct: 62  RQAVLRRLGILALVDSSDLPRPPRHSGLDPLVMASLPVVVFKHQLEN----AAAVECAVC 121

Query: 126 LSAVEDGEEARILPNCKHVFHLECIDKWFGSHSTCPICRTEAAPVIRPEPREAPATETAD 185
           L AVEDGEEAR+LPNCKH FHLECIDKWFG HSTCP CRTEAAP+IRPEPREAP    A+
Sbjct: 122 LCAVEDGEEARVLPNCKHTFHLECIDKWFGLHSTCPNCRTEAAPMIRPEPREAP---VAE 181

Query: 186 SSGGSVSRLSSFRRILSRERSSRRIQPCVRQNENDVVQDLETQ 224
           S GGS SRLSSFRRILSRERSSRRIQPCVR+N ND VQDLE Q
Sbjct: 182 SGGGSSSRLSSFRRILSRERSSRRIQPCVRENGNDDVQDLERQ 217

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BLAST of Sed0021480 vs. ExPASy Swiss-Prot
Match: Q9SLC3 (E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana OX=3702 GN=ATL41 PE=1 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.4e-34
Identity = 100/234 (42.74%), Postives = 133/234 (56.84%), Query Frame = 0


Query: 14  DAHRSGPDP--YNFSNKIMLTAIISLSLVVLLVIALHIYARYALRRHARRQAALRRLGIL 73
           D H   P+P  Y+ ++KIML A+ SLS V+L+V ALH+YAR+ LR   RR+ A R L ++
Sbjct: 14  DHHSFWPNPSTYDLNSKIMLAAVASLSGVILIVFALHLYARFVLR---RRREAFRGLPVI 73

Query: 74  ALVDSRDPPLLHRRSGLDPLVMASLPVVVFKHQSENPDPAGAGVECAVCLSAVEDGEEAR 133
                R P  + +R GL+P V+ASLP             A +  ECAVCLS +++ ++AR
Sbjct: 74  ----FRHPFEMPKR-GLNPTVIASLPTFTV---GATDGVAASATECAVCLSVLKEQDKAR 133

Query: 134 ILPNCKHVFHLECIDKWFGSHSTCPICRTEA--APVIRPEPREAP--------------- 193
            LPNCKH+FH++C+D W  + STCP+CRTE    P + PEPRE P               
Sbjct: 134 ELPNCKHIFHVDCVDTWLTTCSTCPVCRTEVEPRPRLEPEPREGPVGTAPQLLVETRLNL 193

Query: 194 ATETADSSGGS-------VSRLSSFRRILSRERSSRRIQPCVRQNENDVVQDLE 222
             E A SS           SRL+SFR+IL+RERSS RI       + D V DLE
Sbjct: 194 TVEAASSSSSDNKTVVSPASRLNSFRKILTRERSSNRINHSC--PDQDRVADLE 234

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BLAST of Sed0021480 vs. ExPASy Swiss-Prot
Match: Q9SLC4 (RING-H2 finger protein ATL40 OS=Arabidopsis thaliana OX=3702 GN=ATL40 PE=2 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 5.2e-34
Identity = 85/195 (43.59%), Postives = 116/195 (59.49%), Query Frame = 0


Query: 23  YNFSNKIMLTAIISLSLVVLLVIALHIYARYALRRHARRQAALRRLGILALVDSRDPPLL 82
           Y+ S+KI L   +S S+++++V   ++YA++ L R +  Q        L+      PP  
Sbjct: 22  YDASSKIFLVTTVSFSIIIIIVFVYYLYAKFVLHRRSAFQD-------LSFSVVSQPP-- 81

Query: 83  HRRSGLDPLVMASLPVVVFKHQSENPDPAGAGVECAVCLSAVEDGEEARILPNCKHVFHL 142
             + GLD LV+ASLP  V   +++      AG ECAVCLS +E+ + AR+LPNCKHVFH+
Sbjct: 82  --KRGLDSLVIASLPTFVVGIKND-----VAGTECAVCLSLLEEKDNARMLPNCKHVFHV 141

Query: 143 ECIDKWFGSHSTCPICRTEAAPV---IRPEPREAPATETA----------DSSGGSVSRL 202
            C+D W  + STCP+CRTEA P    + PEPRE P  + A           + G SVSRL
Sbjct: 142 SCVDTWLTTQSTCPVCRTEAEPSHPRLEPEPREGPVGDFAPPLDFAGVDNKTGGSSVSRL 200

Query: 203 SSFRRILSRERSSRR 205
            SFRRIL+RERSS R
Sbjct: 202 DSFRRILTRERSSNR 200

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BLAST of Sed0021480 vs. ExPASy Swiss-Prot
Match: Q8L9T5 (RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2)

HSP 1 Score: 128.3 bits (321), Expect = 1.1e-28
Identity = 74/165 (44.85%), Postives = 99/165 (60.00%), Query Frame = 0


Query: 2   SNPSSKPPLDGGDAHRSGPDPYNFSNKIMLTAIISLSLVVLLVIALHIYARY----ALRR 61
           SN     P    D + SG   Y  S KIML+AI+ L  VV+L++ LH+YAR+    A RR
Sbjct: 3   SNDQDPIPFRPEDNNFSGSKTYAMSGKIMLSAIVILFFVVILMVFLHLYARWYLLRARRR 62

Query: 62  HARRQAALRRLGILALV--DSRDPPLLHRRSGLDPLVMASLPVVVFKHQSENPDPAGAGV 121
           H RR++  RR  ++      S     +    GLDP V+ SLPV  F  ++ + DP    +
Sbjct: 63  HLRRRSRNRRATMVFFTADPSTAATSVVASRGLDPNVIKSLPVFTFSDET-HKDP----I 122

Query: 122 ECAVCLSAVEDGEEARILPNCKHVFHLECIDKWFGSHSTCPICRT 161
           ECAVCLS  E+ E  R+LPNC+H FH++CID WF SHSTCP+CR+
Sbjct: 123 ECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRS 162

[Close]

BLAST of Sed0021480 vs. ExPASy Swiss-Prot
Match: Q9LZJ6 (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.2e-24
Identity = 71/191 (37.17%), Postives = 102/191 (53.40%), Query Frame = 0


Query: 19  GPDPYNFSNKIMLTAIISLSLVVLLVIALHIYARYALRRHARRQAALRRLGILALVDSRD 78
           G   Y+ + KIML ++I L + V+L++  H YAR+  RR  RR        + +L  +RD
Sbjct: 18  GSSRYSLNGKIMLASVIILFVAVILILCFHSYARWLFRRQNRRIRRRISAHLRSLAAARD 77

Query: 79  PPLLHRR-SGLDPLVMASLPVVVFKHQS-ENPDPAGAGVECAVCLSAVEDGEEARILPNC 138
           P       S LDP V+  +P+ V+  ++ E+P       EC+VCLS  E+ +E R+LP C
Sbjct: 78  PTQSSSSLSPLDPTVLEKIPIFVYSVKTHESPLE-----ECSVCLSEFEEDDEGRVLPKC 137

Query: 139 KHVFHLECIDKWFGSHSTCPICRT---EAAPVIRPEP-------------REAPATETAD 192
            HVFH++CID WF S S+CP+CR     A PV  PEP              EA ++ ++D
Sbjct: 138 GHVFHVDCIDTWFRSRSSCPLCRAPVQPAQPVTEPEPVAAVFPSVKPIEDTEAGSSSSSD 197

[Close]

BLAST of Sed0021480 vs. ExPASy Swiss-Prot
Match: O22255 (RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.8e-24
Identity = 69/180 (38.33%), Postives = 95/180 (52.78%), Query Frame = 0


Query: 6   SKPPLDGGDAHRSGPDPYNFSNKIMLTAIISLSLVVLLVIALHIYARYALRRHARRQAAL 65
           S  P+ G  +H S    Y  + KIML+++I L + V++++  H YAR+  RRH RR    
Sbjct: 7   STKPIWGSVSHTS--SGYALNGKIMLSSVIVLFVAVIMILCFHSYARWLFRRHNRR--IR 66

Query: 66  RRLGILALVDSRDPPLLHRRSGLDPLVMASLPVVVFKHQSENPDPAGAGVECAVCLSAVE 125
           RR+       S  P    R   LD  V+  +P  +F + S+NP P     EC+VCLS  E
Sbjct: 67  RRIRSHLRTLSASP----RDQALDQAVLDKIP--IFVYSSKNPPPPEEKEECSVCLSEFE 126

Query: 126 DGEEARILPNCKHVFHLECIDKWFGSHSTCPICRTEAAPVIRPEPREAPATETADSSGGS 185
           + +E R+LP C H FH++CID WF S STCP+CR    P  +         ET  SS  S
Sbjct: 127 EEDEGRLLPKCGHSFHVDCIDTWFRSRSTCPLCRAPVQPPFQ-------VIETGSSSSSS 169

[Close]

BLAST of Sed0021480 vs. ExPASy TrEMBL
Match: A0A5A7V7D1 (RING-H2 finger protein ATL40-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1465G00200 PE=4 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.9e-87
Identity = 174/224 (77.68%), Postives = 189/224 (84.38%), Query Frame = 0


Query: 5   SSKPPLDGGDAHRSGP-----DPYNFSNKIMLTAIISLSLVVLLVIALHIYARYALRRHA 64
           S+ P  D GD +  GP     +PY+ +NKIMLTAIISLSLVVLLVIALHIYARYALRRHA
Sbjct: 4   SANPSFDDGDIY-FGPSHPHRNPYDLNNKIMLTAIISLSLVVLLVIALHIYARYALRRHA 63

Query: 65  RRQAALRRLGILALVDSRDPPLLHRRSGLDPLVMASLPVVVFKHQSENPDPAGAGVECAV 124
           RRQA LRRLGILALVDS DP L   RSGLDPLVMAS+PVVVFKHQSENP+P+G  VECAV
Sbjct: 64  RRQAVLRRLGILALVDSSDPHLPPSRSGLDPLVMASMPVVVFKHQSENPEPSGGAVECAV 123

Query: 125 CLSAVEDGEEARILPNCKHVFHLECIDKWFGSHSTCPICRTEAAPVIRPEPREAPATETA 184
           CLSA+ DGE ARILPNCKHVFH+ECIDKWFGSHSTCPICRTEAAP++ PEPRE PA E  
Sbjct: 124 CLSAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRTEAAPMMLPEPREGPAAEVG 183

Query: 185 DSSGGSVSRLSSFRRILSRERSSRRIQPCVRQNENDVVQDLETQ 224
           +S GGS SRLSSFRRILSRERSS RIQPCV Q+ ND V DLE+Q
Sbjct: 184 ESGGGSSSRLSSFRRILSRERSSLRIQPCVFQHRNDAVPDLESQ 226

[Close]

BLAST of Sed0021480 vs. ExPASy TrEMBL
Match: A0A1S4DXK5 (RING-H2 finger protein ATL40-like OS=Cucumis melo OX=3656 GN=LOC103491347 PE=4 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.9e-87
Identity = 174/224 (77.68%), Postives = 189/224 (84.38%), Query Frame = 0


Query: 5   SSKPPLDGGDAHRSGP-----DPYNFSNKIMLTAIISLSLVVLLVIALHIYARYALRRHA 64
           S+ P  D GD +  GP     +PY+ +NKIMLTAIISLSLVVLLVIALHIYARYALRRHA
Sbjct: 4   SANPSFDDGDIY-FGPSHPHRNPYDLNNKIMLTAIISLSLVVLLVIALHIYARYALRRHA 63

Query: 65  RRQAALRRLGILALVDSRDPPLLHRRSGLDPLVMASLPVVVFKHQSENPDPAGAGVECAV 124
           RRQA LRRLGILALVDS DP L   RSGLDPLVMAS+PVVVFKHQSENP+P+G  VECAV
Sbjct: 64  RRQAVLRRLGILALVDSSDPHLPPSRSGLDPLVMASMPVVVFKHQSENPEPSGGAVECAV 123

Query: 125 CLSAVEDGEEARILPNCKHVFHLECIDKWFGSHSTCPICRTEAAPVIRPEPREAPATETA 184
           CLSA+ DGE ARILPNCKHVFH+ECIDKWFGSHSTCPICRTEAAP++ PEPRE PA E  
Sbjct: 124 CLSAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRTEAAPMMLPEPREGPAAEVG 183

Query: 185 DSSGGSVSRLSSFRRILSRERSSRRIQPCVRQNENDVVQDLETQ 224
           +S GGS SRLSSFRRILSRERSS RIQPCV Q+ ND V DLE+Q
Sbjct: 184 ESGGGSSSRLSSFRRILSRERSSLRIQPCVFQHRNDAVPDLESQ 226

[Close]

BLAST of Sed0021480 vs. ExPASy TrEMBL
Match: A0A6J1ESR2 (RING-H2 finger protein ATL40-like OS=Cucurbita moschata OX=3662 GN=LOC111437227 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 1.9e-84
Identity = 175/223 (78.48%), Postives = 183/223 (82.06%), Query Frame = 0


Query: 6   SKPPLDGGDA-----HRSGPDPYNFSNKIMLTAIISLSLVVLLVIALHIYARYALRRHAR 65
           S    D GD+     HR   +PYN +N+IMLTAIISLSLVVLLVIALHIYARYALRRHAR
Sbjct: 2   SASSFDAGDSPFWVDHRPNRNPYNLNNRIMLTAIISLSLVVLLVIALHIYARYALRRHAR 61

Query: 66  RQAALRRLGILALVDSRDPPLLHRRSGLDPLVMASLPVVVFKHQSENPDPAGAGVECAVC 125
           RQA LRRLGILALVDS D P   R SGLDPLVMASLPVVVFKHQ ENP    A VECAVC
Sbjct: 62  RQAVLRRLGILALVDSSDLPRPPRHSGLDPLVMASLPVVVFKHQLENP----AAVECAVC 121

Query: 126 LSAVEDGEEARILPNCKHVFHLECIDKWFGSHSTCPICRTEAAPVIRPEPREAPATETAD 185
           L AVEDGEEAR+LPNCKH FHLECIDKWFG HSTCP CRTEAAP+IRPEPREAP    A+
Sbjct: 122 LCAVEDGEEARVLPNCKHTFHLECIDKWFGLHSTCPNCRTEAAPMIRPEPREAP---VAE 181

Query: 186 SSGGSVSRLSSFRRILSRERSSRRIQPCVRQNENDVVQDLETQ 224
           S GGS SRLSSFRRILSRERSSRRIQPCVR+N ND VQDLE Q
Sbjct: 182 SGGGSSSRLSSFRRILSRERSSRRIQPCVRENGNDDVQDLERQ 217

[Close]

BLAST of Sed0021480 vs. ExPASy TrEMBL
Match: A0A0A0KJL6 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G420520 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.6e-83
Identity = 170/231 (73.59%), Postives = 190/231 (82.25%), Query Frame = 0


Query: 1   MSNPSSKPPLDGGDAHRSGP-----DPYNFSNKIMLTAIISLSLVVLLVIALHIYARYAL 60
           MS+P++ P  DG D +  GP     +PY+ +NKIMLTAI+SLSLVV+LVIALHIYARYAL
Sbjct: 1   MSSPTN-PSFDGDDIY-FGPAHPHRNPYDLNNKIMLTAIVSLSLVVILVIALHIYARYAL 60

Query: 61  RRHARRQAALRRLGILALVDSRDPPLLHRRSGLDPLVMASLPVVVFKHQSENPDPAGAGV 120
           RRHARRQA LRRLGILA +DS D      RSGLDPLVMAS+PVVVFKHQSE+PDP+G GV
Sbjct: 61  RRHARRQAVLRRLGILAFIDSGDHHPPPSRSGLDPLVMASMPVVVFKHQSESPDPSGGGV 120

Query: 121 ECAVCLSAVEDGEEARILPNCKHVFHLECIDKWFGSHSTCPICRTEAAPVIRPEPREAPA 180
           ECAVCLSA+ DGE ARILPNCKHVFH+ECIDKWFGSHSTCPICRTEAAP++ PEPRE PA
Sbjct: 121 ECAVCLSAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRTEAAPMMLPEPREGPA 180

Query: 181 TETAD---SSGGSVSRLSSFRRILSRERSSRRIQPCVRQNENDVVQDLETQ 224
            E  +     GGS SRLSSFRRILSRERSS RIQPCV Q+ ND V DLE+Q
Sbjct: 181 AEVGEGGGGGGGSTSRLSSFRRILSRERSSLRIQPCVLQHRNDAVPDLESQ 229

[Close]

BLAST of Sed0021480 vs. ExPASy TrEMBL
Match: A0A6J1JP92 (E3 ubiquitin-protein ligase ATL41-like OS=Cucurbita maxima OX=3661 GN=LOC111486268 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 1.0e-80
Identity = 172/224 (76.79%), Postives = 182/224 (81.25%), Query Frame = 0


Query: 6   SKPPLDGGDA-----HRSGPD-PYNFSNKIMLTAIISLSLVVLLVIALHIYARYALRRHA 65
           S    D GD+     HRS  + PYN +N+IML+AIISLSLVVLLVIALHIYARYALRRHA
Sbjct: 2   SASSFDAGDSPFWVDHRSNRNHPYNLNNRIMLSAIISLSLVVLLVIALHIYARYALRRHA 61

Query: 66  RRQAALRRLGILALVDSRDPPLLHRRSGLDPLVMASLPVVVFKHQSENPDPAGAGVECAV 125
           RRQA LRR GILALV S D P   R SGLDPLVMASLPVVVFKHQ ENP    A VECAV
Sbjct: 62  RRQAVLRRRGILALVVSSDLPPPPRHSGLDPLVMASLPVVVFKHQLENP----AAVECAV 121

Query: 126 CLSAVEDGEEARILPNCKHVFHLECIDKWFGSHSTCPICRTEAAPVIRPEPREAPATETA 185
           CL AVE+GEEAR+LPNCKH FHLECIDKWFG HSTCPICRTEAAP+IRPEPREAP    A
Sbjct: 122 CLCAVENGEEARVLPNCKHTFHLECIDKWFGLHSTCPICRTEAAPMIRPEPREAP---VA 181

Query: 186 DSSGGSVSRLSSFRRILSRERSSRRIQPCVRQNENDVVQDLETQ 224
           +S GGS SRLSSF RILSRERSSRRIQPCVR+N ND VQDLE Q
Sbjct: 182 ESGGGSSSRLSSFGRILSRERSSRRIQPCVRENGNDDVQDLERQ 218

[Close]

BLAST of Sed0021480 vs. TAIR 10
Match: AT2G42360.1 (RING/U-box superfamily protein )

HSP 1 Score: 147.9 bits (372), Expect = 9.7e-36
Identity = 100/234 (42.74%), Postives = 133/234 (56.84%), Query Frame = 0


Query: 14  DAHRSGPDP--YNFSNKIMLTAIISLSLVVLLVIALHIYARYALRRHARRQAALRRLGIL 73
           D H   P+P  Y+ ++KIML A+ SLS V+L+V ALH+YAR+ LR   RR+ A R L ++
Sbjct: 14  DHHSFWPNPSTYDLNSKIMLAAVASLSGVILIVFALHLYARFVLR---RRREAFRGLPVI 73

Query: 74  ALVDSRDPPLLHRRSGLDPLVMASLPVVVFKHQSENPDPAGAGVECAVCLSAVEDGEEAR 133
                R P  + +R GL+P V+ASLP             A +  ECAVCLS +++ ++AR
Sbjct: 74  ----FRHPFEMPKR-GLNPTVIASLPTFTV---GATDGVAASATECAVCLSVLKEQDKAR 133

Query: 134 ILPNCKHVFHLECIDKWFGSHSTCPICRTEA--APVIRPEPREAP--------------- 193
            LPNCKH+FH++C+D W  + STCP+CRTE    P + PEPRE P               
Sbjct: 134 ELPNCKHIFHVDCVDTWLTTCSTCPVCRTEVEPRPRLEPEPREGPVGTAPQLLVETRLNL 193

Query: 194 ATETADSSGGS-------VSRLSSFRRILSRERSSRRIQPCVRQNENDVVQDLE 222
             E A SS           SRL+SFR+IL+RERSS RI       + D V DLE
Sbjct: 194 TVEAASSSSSDNKTVVSPASRLNSFRKILTRERSSNRINHSC--PDQDRVADLE 234

[Close]

BLAST of Sed0021480 vs. TAIR 10
Match: AT2G42350.1 (RING/U-box superfamily protein )

HSP 1 Score: 146.0 bits (367), Expect = 3.7e-35
Identity = 85/195 (43.59%), Postives = 116/195 (59.49%), Query Frame = 0


Query: 23  YNFSNKIMLTAIISLSLVVLLVIALHIYARYALRRHARRQAALRRLGILALVDSRDPPLL 82
           Y+ S+KI L   +S S+++++V   ++YA++ L R +  Q        L+      PP  
Sbjct: 22  YDASSKIFLVTTVSFSIIIIIVFVYYLYAKFVLHRRSAFQD-------LSFSVVSQPP-- 81

Query: 83  HRRSGLDPLVMASLPVVVFKHQSENPDPAGAGVECAVCLSAVEDGEEARILPNCKHVFHL 142
             + GLD LV+ASLP  V   +++      AG ECAVCLS +E+ + AR+LPNCKHVFH+
Sbjct: 82  --KRGLDSLVIASLPTFVVGIKND-----VAGTECAVCLSLLEEKDNARMLPNCKHVFHV 141

Query: 143 ECIDKWFGSHSTCPICRTEAAPV---IRPEPREAPATETA----------DSSGGSVSRL 202
            C+D W  + STCP+CRTEA P    + PEPRE P  + A           + G SVSRL
Sbjct: 142 SCVDTWLTTQSTCPVCRTEAEPSHPRLEPEPREGPVGDFAPPLDFAGVDNKTGGSSVSRL 200

Query: 203 SSFRRILSRERSSRR 205
            SFRRIL+RERSS R
Sbjct: 202 DSFRRILTRERSSNR 200

[Close]

BLAST of Sed0021480 vs. TAIR 10
Match: AT3G16720.1 (TOXICOS EN LEVADURA 2 )

HSP 1 Score: 128.3 bits (321), Expect = 7.9e-30
Identity = 74/165 (44.85%), Postives = 99/165 (60.00%), Query Frame = 0


Query: 2   SNPSSKPPLDGGDAHRSGPDPYNFSNKIMLTAIISLSLVVLLVIALHIYARY----ALRR 61
           SN     P    D + SG   Y  S KIML+AI+ L  VV+L++ LH+YAR+    A RR
Sbjct: 3   SNDQDPIPFRPEDNNFSGSKTYAMSGKIMLSAIVILFFVVILMVFLHLYARWYLLRARRR 62

Query: 62  HARRQAALRRLGILALV--DSRDPPLLHRRSGLDPLVMASLPVVVFKHQSENPDPAGAGV 121
           H RR++  RR  ++      S     +    GLDP V+ SLPV  F  ++ + DP    +
Sbjct: 63  HLRRRSRNRRATMVFFTADPSTAATSVVASRGLDPNVIKSLPVFTFSDET-HKDP----I 122

Query: 122 ECAVCLSAVEDGEEARILPNCKHVFHLECIDKWFGSHSTCPICRT 161
           ECAVCLS  E+ E  R+LPNC+H FH++CID WF SHSTCP+CR+
Sbjct: 123 ECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRS 162

[Close]

BLAST of Sed0021480 vs. TAIR 10
Match: AT3G62690.1 (AtL5 )

HSP 1 Score: 114.0 bits (284), Expect = 1.5e-25
Identity = 71/191 (37.17%), Postives = 102/191 (53.40%), Query Frame = 0


Query: 19  GPDPYNFSNKIMLTAIISLSLVVLLVIALHIYARYALRRHARRQAALRRLGILALVDSRD 78
           G   Y+ + KIML ++I L + V+L++  H YAR+  RR  RR        + +L  +RD
Sbjct: 18  GSSRYSLNGKIMLASVIILFVAVILILCFHSYARWLFRRQNRRIRRRISAHLRSLAAARD 77

Query: 79  PPLLHRR-SGLDPLVMASLPVVVFKHQS-ENPDPAGAGVECAVCLSAVEDGEEARILPNC 138
           P       S LDP V+  +P+ V+  ++ E+P       EC+VCLS  E+ +E R+LP C
Sbjct: 78  PTQSSSSLSPLDPTVLEKIPIFVYSVKTHESPLE-----ECSVCLSEFEEDDEGRVLPKC 137

Query: 139 KHVFHLECIDKWFGSHSTCPICRT---EAAPVIRPEP-------------REAPATETAD 192
            HVFH++CID WF S S+CP+CR     A PV  PEP              EA ++ ++D
Sbjct: 138 GHVFHVDCIDTWFRSRSSCPLCRAPVQPAQPVTEPEPVAAVFPSVKPIEDTEAGSSSSSD 197

[Close]

BLAST of Sed0021480 vs. TAIR 10
Match: AT2G47560.1 (RING/U-box superfamily protein )

HSP 1 Score: 113.6 bits (283), Expect = 2.0e-25
Identity = 69/180 (38.33%), Postives = 95/180 (52.78%), Query Frame = 0


Query: 6   SKPPLDGGDAHRSGPDPYNFSNKIMLTAIISLSLVVLLVIALHIYARYALRRHARRQAAL 65
           S  P+ G  +H S    Y  + KIML+++I L + V++++  H YAR+  RRH RR    
Sbjct: 7   STKPIWGSVSHTS--SGYALNGKIMLSSVIVLFVAVIMILCFHSYARWLFRRHNRR--IR 66

Query: 66  RRLGILALVDSRDPPLLHRRSGLDPLVMASLPVVVFKHQSENPDPAGAGVECAVCLSAVE 125
           RR+       S  P    R   LD  V+  +P  +F + S+NP P     EC+VCLS  E
Sbjct: 67  RRIRSHLRTLSASP----RDQALDQAVLDKIP--IFVYSSKNPPPPEEKEECSVCLSEFE 126

Query: 126 DGEEARILPNCKHVFHLECIDKWFGSHSTCPICRTEAAPVIRPEPREAPATETADSSGGS 185
           + +E R+LP C H FH++CID WF S STCP+CR    P  +         ET  SS  S
Sbjct: 127 EEDEGRLLPKCGHSFHVDCIDTWFRSRSTCPLCRAPVQPPFQ-------VIETGSSSSSS 169

The following BLAST results are available for this feature:

BLAST of Sed0021480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877602.1	1.3e-90	80.00	RING-H2 finger protein ATL40-like [Benincasa hispida]	[more]
XP_016900708.1	3.9e-87	77.68	PREDICTED: RING-H2 finger protein ATL40-like [Cucumis melo] >KAA0061641.1 RING-H...	[more]
XP_022930874.1	4.0e-84	78.48	RING-H2 finger protein ATL40-like [Cucurbita moschata]	[more]
XP_023529863.1	1.2e-83	77.29	RING-H2 finger protein ATL40-like [Cucurbita pepo subsp. pepo]	[more]
KAG6589265.1	2.0e-83	78.03	E3 ubiquitin-protein ligase ATL41, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Sed0021480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SLC3	1.4e-34	42.74	E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana OX=3702 GN=ATL41 PE=1 ...	[more]
Q9SLC4	5.2e-34	43.59	RING-H2 finger protein ATL40 OS=Arabidopsis thaliana OX=3702 GN=ATL40 PE=2 SV=1	[more]
Q8L9T5	1.1e-28	44.85	RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2	[more]
Q9LZJ6	2.2e-24	37.17	RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1	[more]
O22255	2.8e-24	38.33	RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1	[more]

BLAST of Sed0021480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V7D1	1.9e-87	77.68	RING-H2 finger protein ATL40-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S4DXK5	1.9e-87	77.68	RING-H2 finger protein ATL40-like OS=Cucumis melo OX=3656 GN=LOC103491347 PE=4 S...	[more]
A0A6J1ESR2	1.9e-84	78.48	RING-H2 finger protein ATL40-like OS=Cucurbita moschata OX=3662 GN=LOC111437227 ...	[more]
A0A0A0KJL6	1.6e-83	73.59	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G420520 P...	[more]
A0A6J1JP92	1.0e-80	76.79	E3 ubiquitin-protein ligase ATL41-like OS=Cucurbita maxima OX=3661 GN=LOC1114862...	[more]

BLAST of Sed0021480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42360.1	9.7e-36	42.74	RING/U-box superfamily protein	[more]
AT2G42350.1	3.7e-35	43.59	RING/U-box superfamily protein	[more]
AT3G16720.1	7.9e-30	44.85	TOXICOS EN LEVADURA 2	[more]
AT3G62690.1	1.5e-25	37.17	AtL5	[more]
AT2G47560.1	2.0e-25	38.33	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 117..158 e-value: 4.9E-8 score: 42.7
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 116..159 e-value: 1.6E-14 score: 53.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 117..159 score: 12.858103
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 92..165 e-value: 2.1E-21 score: 76.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 207..223
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 178..192
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 170..223
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 22..172
None	No IPR available	PANTHER	PTHR14155:SF558	RING-H2 FINGER PROTEIN ATL40-LIKE	coord: 22..172
None	No IPR available	CDD	cd16461	RING-H2_EL5_like	coord: 116..159 e-value: 3.66113E-18 score: 73.1131
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 94..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0021480.1	Sed0021480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane