Sed0021409 (gene) Chayote v1

Overview


Name	Sed0021409
Type	gene
Organism	Sechium edule (Chayote v1)
Description	CP12 domain-containing protein
Location	LG05: 23291627 .. 23292195 (-)
RNA-Seq Expression	Sed0021409
Synteny	Sed0021409

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACCATTGCTTTTTTTCCATAAACAAAGATATGGCAACCATTTCTGGGTTGAACCTCTCAAGTCCAAGGATCTTGGCTAAGGCAGCTGAGACACCAAAACTGCAGGCCATCAATTCCGGATGGCTCCACAGCCAATGGAAGCAGTCACCCCGATTCCGAGCCATGCGGTTGAGAGTACCACCGGTTCATGCTGCACCTGATAAGATATCGGATAAGGTGGAAGAGAGCATCAAGAATGCAGAGGAGGCTTGCGCTGGTGACCCTGTGAGCGGGGAGTGTGCTGCAGCGTGGGACGAAGTCGAGGAATTGAGCGCAGCCGCGAGCCATGCTCGTGACAGGAAGAAGGAGTCGGATCCATTGGAGACCTATTGCAAAGACAACCCAGAGACTGAGGAGTGTCGAACCTATGACAATTGAGTAATGAAATGATATCAAGTTTTAGGCATTTTATCATCATCTATATATTGATATGGATTAAAGTTACTGGATGACCGGTGTAGCATAACTTTTTTAAGTTGTTTTACTCTACTCTATTGAAAACATGATTTTTTTTCCCTTTTTGGATTCAA

mRNA sequence

AACCATTGCTTTTTTTCCATAAACAAAGATATGGCAACCATTTCTGGGTTGAACCTCTCAAGTCCAAGGATCTTGGCTAAGGCAGCTGAGACACCAAAACTGCAGGCCATCAATTCCGGATGGCTCCACAGCCAATGGAAGCAGTCACCCCGATTCCGAGCCATGCGGTTGAGAGTACCACCGGTTCATGCTGCACCTGATAAGATATCGGATAAGGTGGAAGAGAGCATCAAGAATGCAGAGGAGGCTTGCGCTGGTGACCCTGTGAGCGGGGAGTGTGCTGCAGCGTGGGACGAAGTCGAGGAATTGAGCGCAGCCGCGAGCCATGCTCGTGACAGGAAGAAGGAGTCGGATCCATTGGAGACCTATTGCAAAGACAACCCAGAGACTGAGGAGTGTCGAACCTATGACAATTGAGTAATGAAATGATATCAAGTTTTAGGCATTTTATCATCATCTATATATTGATATGGATTAAAGTTACTGGATGACCGGTGTAGCATAACTTTTTTAAGTTGTTTTACTCTACTCTATTGAAAACATGATTTTTTTTCCCTTTTTGGATTCAA

Coding sequence (CDS)

ATGGCAACCATTTCTGGGTTGAACCTCTCAAGTCCAAGGATCTTGGCTAAGGCAGCTGAGACACCAAAACTGCAGGCCATCAATTCCGGATGGCTCCACAGCCAATGGAAGCAGTCACCCCGATTCCGAGCCATGCGGTTGAGAGTACCACCGGTTCATGCTGCACCTGATAAGATATCGGATAAGGTGGAAGAGAGCATCAAGAATGCAGAGGAGGCTTGCGCTGGTGACCCTGTGAGCGGGGAGTGTGCTGCAGCGTGGGACGAAGTCGAGGAATTGAGCGCAGCCGCGAGCCATGCTCGTGACAGGAAGAAGGAGTCGGATCCATTGGAGACCTATTGCAAAGACAACCCAGAGACTGAGGAGTGTCGAACCTATGACAATTGA

Protein sequence

MATISGLNLSSPRILAKAAETPKLQAINSGWLHSQWKQSPRFRAMRLRVPPVHAAPDKISDKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKKESDPLETYCKDNPETEECRTYDN

Homology

[Close]

BLAST of Sed0021409 vs. NCBI nr
Match: XP_022155326.1 (calvin cycle protein CP12-2, chloroplastic-like [Momordica charantia])

HSP 1 Score: 235.3 bits (599), Expect = 2.8e-58
Identity = 116/128 (90.62%), Postives = 122/128 (95.31%), Query Frame = 0


Query: 1   MATISGLNLSSPRILAKAAETPKLQAINSGWLHSQWKQSPRFRAMRLRVPPVHAAPDKIS 60
           MATISG+NLSSPRILAKAAETPK+QA+N GWLH  W+QS RF A+RLRVPPVHAAPDKIS
Sbjct: 1   MATISGVNLSSPRILAKAAETPKVQALNGGWLHRPWRQSGRFTAIRLRVPPVHAAPDKIS 60

Query: 61  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKKESDPLETYCKDNPET 120
           DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARD+KKESDPLE YCKDNPET
Sbjct: 61  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDKKKESDPLENYCKDNPET 120

Query: 121 EECRTYDN 129
           EECRTYDN
Sbjct: 121 EECRTYDN 128

[Close]

BLAST of Sed0021409 vs. NCBI nr
Match: XP_008454293.1 (PREDICTED: calvin cycle protein CP12-2, chloroplastic [Cucumis melo] >KAA0044414.1 calvin cycle protein CP12-2 [Cucumis melo var. makuwa] >TYK29541.1 calvin cycle protein CP12-2 [Cucumis melo var. makuwa])

HSP 1 Score: 227.6 bits (579), Expect = 5.9e-56
Identity = 113/128 (88.28%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 1   MATISGLNLSSPRILAKAAETPKLQAINSGWLHSQWKQSPRFRAMRLRVPPVHAAPDKIS 60
           MATISG+N+SSPRILAKAA+TPK+Q +N GWL   WKQS R  A+RLRVPPVHAAPDKIS
Sbjct: 1   MATISGVNISSPRILAKAAQTPKVQPLNVGWLRCSWKQSARVGAIRLRVPPVHAAPDKIS 60

Query: 61  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKKESDPLETYCKDNPET 120
           DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKKESDPLE YCKDNPET
Sbjct: 61  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKKESDPLENYCKDNPET 120

Query: 121 EECRTYDN 129
           EECRTYDN
Sbjct: 121 EECRTYDN 128

[Close]

BLAST of Sed0021409 vs. NCBI nr
Match: XP_004152225.1 (calvin cycle protein CP12-2, chloroplastic [Cucumis sativus] >KGN52853.1 hypothetical protein Csa_014965 [Cucumis sativus])

HSP 1 Score: 226.5 bits (576), Expect = 1.3e-55
Identity = 112/128 (87.50%), Postives = 120/128 (93.75%), Query Frame = 0


Query: 1   MATISGLNLSSPRILAKAAETPKLQAINSGWLHSQWKQSPRFRAMRLRVPPVHAAPDKIS 60
           MATISG+NLSSPRI+AKAA+TPK+Q +N GWL   WKQS +  A+RLRVPPVHAAPDKIS
Sbjct: 1   MATISGVNLSSPRIMAKAAKTPKVQLLNVGWLRCSWKQSAQLGAIRLRVPPVHAAPDKIS 60

Query: 61  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKKESDPLETYCKDNPET 120
           DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKKESDPLE+YCKDNPET
Sbjct: 61  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKKESDPLESYCKDNPET 120

Query: 121 EECRTYDN 129
           EECRTYDN
Sbjct: 121 EECRTYDN 128

[Close]

BLAST of Sed0021409 vs. NCBI nr
Match: XP_022934393.1 (calvin cycle protein CP12-2, chloroplastic-like [Cucurbita moschata] >XP_022984077.1 calvin cycle protein CP12-2, chloroplastic-like [Cucurbita maxima] >KAG6581299.1 Calvin cycle protein CP12-2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018019.1 Calvin cycle protein CP12-2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 224.9 bits (572), Expect = 3.8e-55
Identity = 113/128 (88.28%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 1   MATISGLNLSSPRILAKAAETPKLQAINSGWLHSQWKQSPRFRAMRLRVPPVHAAPDKIS 60
           MATISG+NLSSPRILAKA E PK Q+ N G+L   WKQS +FRA+RLRVPPVHAAPDKIS
Sbjct: 1   MATISGVNLSSPRILAKAVEIPKPQSFNVGFLRRSWKQSTQFRAIRLRVPPVHAAPDKIS 60

Query: 61  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKKESDPLETYCKDNPET 120
           DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARD+KKESDPLETYCKDNPET
Sbjct: 61  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDKKKESDPLETYCKDNPET 120

Query: 121 EECRTYDN 129
           EECRTYDN
Sbjct: 121 EECRTYDN 128

[Close]

BLAST of Sed0021409 vs. NCBI nr
Match: XP_038903303.1 (calvin cycle protein CP12-1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 223.0 bits (567), Expect = 1.5e-54
Identity = 113/128 (88.28%), Postives = 118/128 (92.19%), Query Frame = 0


Query: 1   MATISGLNLSSPRILAKAAETPKLQAINSGWLHSQWKQSPRFRAMRLRVPPVHAAPDKIS 60
           MATI G+NLSSPRIL KAA+TPK+QA+N G L   WKQS RF A+RLRVPPVHAAPDKIS
Sbjct: 23  MATIYGVNLSSPRILPKAAKTPKVQALNVGSLRCSWKQSTRFGAVRLRVPPVHAAPDKIS 82

Query: 61  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKKESDPLETYCKDNPET 120
           DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKKESDPLE YCKDNPET
Sbjct: 83  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKKESDPLENYCKDNPET 142

Query: 121 EECRTYDN 129
           EECRTYDN
Sbjct: 143 EECRTYDN 150

[Close]

BLAST of Sed0021409 vs. ExPASy Swiss-Prot
Match: Q9LZP9 (Calvin cycle protein CP12-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP12-2 PE=1 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 6.9e-31
Identity = 77/132 (58.33%), Postives = 93/132 (70.45%), Query Frame = 0


Query: 1   MATI-SGLNLSSPRILAKAAETPKLQAINSGWLHSQWKQSPRFRAMRLRVPPVHAAPD-K 60
           MATI +GLN+++ R+   +   P   A     L++ W    R     +++ P+ AAP+  
Sbjct: 1   MATIATGLNIATQRVFVTSENRPVCLA-GPVHLNNSWNLGSRTTNRMMKLQPIKAAPEGG 60

Query: 61  ISDKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKKE--SDPLETYCKD 120
           ISD VE+SIK A+E CAGDPVSGEC AAWDEVEELSAAASHARD+KK   SDPLE YCKD
Sbjct: 61  ISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDKKKADGSDPLEEYCKD 120

Query: 121 NPETEECRTYDN 129
           NPET ECRTYDN
Sbjct: 121 NPETNECRTYDN 131

[Close]

BLAST of Sed0021409 vs. ExPASy Swiss-Prot
Match: O22914 (Calvin cycle protein CP12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP12-1 PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 9.3e-28
Identity = 72/132 (54.55%), Postives = 92/132 (69.70%), Query Frame = 0


Query: 1   MATI--SGLNLSSPRILAKAAETPKLQAINSGWLHSQWKQSPRFRAMRLRVPPVHAAPDK 60
           M TI  +GLN+++PR++ +    P  + +    L+  WK    F +M+  V     +  +
Sbjct: 1   MTTIAAAGLNVATPRVVVR----PVARVLGPVRLNYPWK----FGSMKRMVVVKATSEGE 60

Query: 61  ISDKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKKE--SDPLETYCKD 120
           IS+KVE+SI+ A+E CA DPVSGEC AAWDEVEELSAAASHARD+KK   SDPLE YC D
Sbjct: 61  ISEKVEKSIQEAKETCADDPVSGECVAAWDEVEELSAAASHARDKKKAGGSDPLEEYCND 120

Query: 121 NPETEECRTYDN 129
           NPET+ECRTYDN
Sbjct: 121 NPETDECRTYDN 124

[Close]

BLAST of Sed0021409 vs. ExPASy Swiss-Prot
Match: Q9C9K2 (Calvin cycle protein CP12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP12-3 PE=1 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.4e-12
Identity = 35/74 (47.30%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 57  DKISDKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKK--ESDPLETYC 116
           +K+S+ +EE +K A E C  + +S EC  AWDEVEE+S A +  R + K    DPLE++C
Sbjct: 61  EKLSEMIEEKVKEATEVCEAEEMSEECRVAWDEVEEVSQARADLRIKLKLLNQDPLESFC 120

Query: 117 KDNPETEECRTYDN 129
           ++NPET+ECR Y++
Sbjct: 121 QENPETDECRIYED 134

[Close]

BLAST of Sed0021409 vs. ExPASy Swiss-Prot
Match: A6Q0K5 (Calvin cycle protein CP12, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=CP12 PE=1 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 5.5e-12
Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 59  ISDKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKKE----SDPLETYC 118
           ++ KV++++K AE+ACA    S +CA AWD VEELSAA SH +D  K     +DPLE +C
Sbjct: 35  LNKKVQDAVKEAEDACA-KGTSADCAVAWDTVEELSAAVSHKKDAVKADVTLTDPLEAFC 94

Query: 119 KDNPETEECRTYDN 129
           KD P+ +ECR Y++
Sbjct: 95  KDAPDADECRVYED 107

[Close]

BLAST of Sed0021409 vs. ExPASy TrEMBL
Match: A0A6J1DRE1 (calvin cycle protein CP12-2, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111022459 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.4e-58
Identity = 116/128 (90.62%), Postives = 122/128 (95.31%), Query Frame = 0


Query: 1   MATISGLNLSSPRILAKAAETPKLQAINSGWLHSQWKQSPRFRAMRLRVPPVHAAPDKIS 60
           MATISG+NLSSPRILAKAAETPK+QA+N GWLH  W+QS RF A+RLRVPPVHAAPDKIS
Sbjct: 1   MATISGVNLSSPRILAKAAETPKVQALNGGWLHRPWRQSGRFTAIRLRVPPVHAAPDKIS 60

Query: 61  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKKESDPLETYCKDNPET 120
           DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARD+KKESDPLE YCKDNPET
Sbjct: 61  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDKKKESDPLENYCKDNPET 120

Query: 121 EECRTYDN 129
           EECRTYDN
Sbjct: 121 EECRTYDN 128

[Close]

BLAST of Sed0021409 vs. ExPASy TrEMBL
Match: A0A5D3E1R4 (Calvin cycle protein CP12-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001450 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.9e-56
Identity = 113/128 (88.28%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 1   MATISGLNLSSPRILAKAAETPKLQAINSGWLHSQWKQSPRFRAMRLRVPPVHAAPDKIS 60
           MATISG+N+SSPRILAKAA+TPK+Q +N GWL   WKQS R  A+RLRVPPVHAAPDKIS
Sbjct: 1   MATISGVNISSPRILAKAAQTPKVQPLNVGWLRCSWKQSARVGAIRLRVPPVHAAPDKIS 60

Query: 61  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKKESDPLETYCKDNPET 120
           DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKKESDPLE YCKDNPET
Sbjct: 61  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKKESDPLENYCKDNPET 120

Query: 121 EECRTYDN 129
           EECRTYDN
Sbjct: 121 EECRTYDN 128

[Close]

BLAST of Sed0021409 vs. ExPASy TrEMBL
Match: A0A1S3BZH5 (calvin cycle protein CP12-2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103494733 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.9e-56
Identity = 113/128 (88.28%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 1   MATISGLNLSSPRILAKAAETPKLQAINSGWLHSQWKQSPRFRAMRLRVPPVHAAPDKIS 60
           MATISG+N+SSPRILAKAA+TPK+Q +N GWL   WKQS R  A+RLRVPPVHAAPDKIS
Sbjct: 1   MATISGVNISSPRILAKAAQTPKVQPLNVGWLRCSWKQSARVGAIRLRVPPVHAAPDKIS 60

Query: 61  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKKESDPLETYCKDNPET 120
           DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKKESDPLE YCKDNPET
Sbjct: 61  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKKESDPLENYCKDNPET 120

Query: 121 EECRTYDN 129
           EECRTYDN
Sbjct: 121 EECRTYDN 128

[Close]

BLAST of Sed0021409 vs. ExPASy TrEMBL
Match: A0A0A0KTG0 (Chloroplast protein 12 OS=Cucumis sativus OX=3659 GN=Csa_4G003670 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 6.4e-56
Identity = 112/128 (87.50%), Postives = 120/128 (93.75%), Query Frame = 0


Query: 1   MATISGLNLSSPRILAKAAETPKLQAINSGWLHSQWKQSPRFRAMRLRVPPVHAAPDKIS 60
           MATISG+NLSSPRI+AKAA+TPK+Q +N GWL   WKQS +  A+RLRVPPVHAAPDKIS
Sbjct: 1   MATISGVNLSSPRIMAKAAKTPKVQLLNVGWLRCSWKQSAQLGAIRLRVPPVHAAPDKIS 60

Query: 61  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKKESDPLETYCKDNPET 120
           DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKKESDPLE+YCKDNPET
Sbjct: 61  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKKESDPLESYCKDNPET 120

Query: 121 EECRTYDN 129
           EECRTYDN
Sbjct: 121 EECRTYDN 128

[Close]

BLAST of Sed0021409 vs. ExPASy TrEMBL
Match: A0A6J1J155 (calvin cycle protein CP12-2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111482497 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.9e-55
Identity = 113/128 (88.28%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 1   MATISGLNLSSPRILAKAAETPKLQAINSGWLHSQWKQSPRFRAMRLRVPPVHAAPDKIS 60
           MATISG+NLSSPRILAKA E PK Q+ N G+L   WKQS +FRA+RLRVPPVHAAPDKIS
Sbjct: 1   MATISGVNLSSPRILAKAVEIPKPQSFNVGFLRRSWKQSTQFRAIRLRVPPVHAAPDKIS 60

Query: 61  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKKESDPLETYCKDNPET 120
           DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARD+KKESDPLETYCKDNPET
Sbjct: 61  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDKKKESDPLETYCKDNPET 120

Query: 121 EECRTYDN 129
           EECRTYDN
Sbjct: 121 EECRTYDN 128

[Close]

BLAST of Sed0021409 vs. TAIR 10
Match: AT3G62410.1 (CP12 domain-containing protein 2 )

HSP 1 Score: 134.8 bits (338), Expect = 4.9e-32
Identity = 77/132 (58.33%), Postives = 93/132 (70.45%), Query Frame = 0


Query: 1   MATI-SGLNLSSPRILAKAAETPKLQAINSGWLHSQWKQSPRFRAMRLRVPPVHAAPD-K 60
           MATI +GLN+++ R+   +   P   A     L++ W    R     +++ P+ AAP+  
Sbjct: 1   MATIATGLNIATQRVFVTSENRPVCLA-GPVHLNNSWNLGSRTTNRMMKLQPIKAAPEGG 60

Query: 61  ISDKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKKE--SDPLETYCKD 120
           ISD VE+SIK A+E CAGDPVSGEC AAWDEVEELSAAASHARD+KK   SDPLE YCKD
Sbjct: 61  ISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDKKKADGSDPLEEYCKD 120

Query: 121 NPETEECRTYDN 129
           NPET ECRTYDN
Sbjct: 121 NPETNECRTYDN 131

[Close]

BLAST of Sed0021409 vs. TAIR 10
Match: AT2G47400.1 (CP12 domain-containing protein 1 )

HSP 1 Score: 124.4 bits (311), Expect = 6.6e-29
Identity = 72/132 (54.55%), Postives = 92/132 (69.70%), Query Frame = 0


Query: 1   MATI--SGLNLSSPRILAKAAETPKLQAINSGWLHSQWKQSPRFRAMRLRVPPVHAAPDK 60
           M TI  +GLN+++PR++ +    P  + +    L+  WK    F +M+  V     +  +
Sbjct: 1   MTTIAAAGLNVATPRVVVR----PVARVLGPVRLNYPWK----FGSMKRMVVVKATSEGE 60

Query: 61  ISDKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKKE--SDPLETYCKD 120
           IS+KVE+SI+ A+E CA DPVSGEC AAWDEVEELSAAASHARD+KK   SDPLE YC D
Sbjct: 61  ISEKVEKSIQEAKETCADDPVSGECVAAWDEVEELSAAASHARDKKKAGGSDPLEEYCND 120

Query: 121 NPETEECRTYDN 129
           NPET+ECRTYDN
Sbjct: 121 NPETDECRTYDN 124

[Close]

BLAST of Sed0021409 vs. TAIR 10
Match: AT1G76560.1 (CP12 domain-containing protein 3 )

HSP 1 Score: 73.2 bits (178), Expect = 1.7e-13
Identity = 35/74 (47.30%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 57  DKISDKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKK--ESDPLETYC 116
           +K+S+ +EE +K A E C  + +S EC  AWDEVEE+S A +  R + K    DPLE++C
Sbjct: 61  EKLSEMIEEKVKEATEVCEAEEMSEECRVAWDEVEEVSQARADLRIKLKLLNQDPLESFC 120

Query: 117 KDNPETEECRTYDN 129
           ++NPET+ECR Y++
Sbjct: 121 QENPETDECRIYED 134

The following BLAST results are available for this feature:

BLAST of Sed0021409 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155326.1	2.8e-58	90.63	calvin cycle protein CP12-2, chloroplastic-like [Momordica charantia]	[more]
XP_008454293.1	5.9e-56	88.28	PREDICTED: calvin cycle protein CP12-2, chloroplastic [Cucumis melo] >KAA0044414...	[more]
XP_004152225.1	1.3e-55	87.50	calvin cycle protein CP12-2, chloroplastic [Cucumis sativus] >KGN52853.1 hypothe...	[more]
XP_022934393.1	3.8e-55	88.28	calvin cycle protein CP12-2, chloroplastic-like [Cucurbita moschata] >XP_0229840...	[more]
XP_038903303.1	1.5e-54	88.28	calvin cycle protein CP12-1, chloroplastic-like [Benincasa hispida]	[more]

BLAST of Sed0021409 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZP9	6.9e-31	58.33	Calvin cycle protein CP12-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP...	[more]
O22914	9.3e-28	54.55	Calvin cycle protein CP12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP...	[more]
Q9C9K2	2.4e-12	47.30	Calvin cycle protein CP12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP...	[more]
A6Q0K5	5.5e-12	50.00	Calvin cycle protein CP12, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN...	[more]

BLAST of Sed0021409 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DRE1	1.4e-58	90.63	calvin cycle protein CP12-2, chloroplastic-like OS=Momordica charantia OX=3673 G...	[more]
A0A5D3E1R4	2.9e-56	88.28	Calvin cycle protein CP12-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3BZH5	2.9e-56	88.28	calvin cycle protein CP12-2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1034947...	[more]
A0A0A0KTG0	6.4e-56	87.50	Chloroplast protein 12 OS=Cucumis sativus OX=3659 GN=Csa_4G003670 PE=4 SV=1	[more]
A0A6J1J155	1.9e-55	88.28	calvin cycle protein CP12-2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Sed0021409 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G62410.1	4.9e-32	58.33	CP12 domain-containing protein 2	[more]
AT2G47400.1	6.6e-29	54.55	CP12 domain-containing protein 1	[more]
AT1G76560.1	1.7e-13	47.30	CP12 domain-containing protein 3	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003823	Domain of unknown function CP12	SMART	SM01093	CP12_2	coord: 59..128 e-value: 7.7E-29 score: 111.8
IPR003823	Domain of unknown function CP12	PFAM	PF02672	CP12	coord: 59..127 e-value: 3.7E-28 score: 98.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..128
None	No IPR available	PANTHER	PTHR33921:SF15	CALVIN CYCLE PROTEIN CP12-2, CHLOROPLASTIC	coord: 1..128
IPR039314	Calvin cycle protein CP12-like	PANTHER	PTHR33921	CALVIN CYCLE PROTEIN CP12-2, CHLOROPLASTIC	coord: 1..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0021409.1	Sed0021409.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0080153	negative regulation of reductive pentose-phosphate cycle
cellular_component	GO:0009507	chloroplast