
Sed0021409 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AACCATTGCTTTTTTTCCATAAACAAAGATATGGCAACCATTTCTGGGTTGAACCTCTCAAGTCCAAGGATCTTGGCTAAGGCAGCTGAGACACCAAAACTGCAGGCCATCAATTCCGGATGGCTCCACAGCCAATGGAAGCAGTCACCCCGATTCCGAGCCATGCGGTTGAGAGTACCACCGGTTCATGCTGCACCTGATAAGATATCGGATAAGGTGGAAGAGAGCATCAAGAATGCAGAGGAGGCTTGCGCTGGTGACCCTGTGAGCGGGGAGTGTGCTGCAGCGTGGGACGAAGTCGAGGAATTGAGCGCAGCCGCGAGCCATGCTCGTGACAGGAAGAAGGAGTCGGATCCATTGGAGACCTATTGCAAAGACAACCCAGAGACTGAGGAGTGTCGAACCTATGACAATTGAGTAATGAAATGATATCAAGTTTTAGGCATTTTATCATCATCTATATATTGATATGGATTAAAGTTACTGGATGACCGGTGTAGCATAACTTTTTTAAGTTGTTTTACTCTACTCTATTGAAAACATGATTTTTTTTCCCTTTTTGGATTCAA AACCATTGCTTTTTTTCCATAAACAAAGATATGGCAACCATTTCTGGGTTGAACCTCTCAAGTCCAAGGATCTTGGCTAAGGCAGCTGAGACACCAAAACTGCAGGCCATCAATTCCGGATGGCTCCACAGCCAATGGAAGCAGTCACCCCGATTCCGAGCCATGCGGTTGAGAGTACCACCGGTTCATGCTGCACCTGATAAGATATCGGATAAGGTGGAAGAGAGCATCAAGAATGCAGAGGAGGCTTGCGCTGGTGACCCTGTGAGCGGGGAGTGTGCTGCAGCGTGGGACGAAGTCGAGGAATTGAGCGCAGCCGCGAGCCATGCTCGTGACAGGAAGAAGGAGTCGGATCCATTGGAGACCTATTGCAAAGACAACCCAGAGACTGAGGAGTGTCGAACCTATGACAATTGAGTAATGAAATGATATCAAGTTTTAGGCATTTTATCATCATCTATATATTGATATGGATTAAAGTTACTGGATGACCGGTGTAGCATAACTTTTTTAAGTTGTTTTACTCTACTCTATTGAAAACATGATTTTTTTTCCCTTTTTGGATTCAA ATGGCAACCATTTCTGGGTTGAACCTCTCAAGTCCAAGGATCTTGGCTAAGGCAGCTGAGACACCAAAACTGCAGGCCATCAATTCCGGATGGCTCCACAGCCAATGGAAGCAGTCACCCCGATTCCGAGCCATGCGGTTGAGAGTACCACCGGTTCATGCTGCACCTGATAAGATATCGGATAAGGTGGAAGAGAGCATCAAGAATGCAGAGGAGGCTTGCGCTGGTGACCCTGTGAGCGGGGAGTGTGCTGCAGCGTGGGACGAAGTCGAGGAATTGAGCGCAGCCGCGAGCCATGCTCGTGACAGGAAGAAGGAGTCGGATCCATTGGAGACCTATTGCAAAGACAACCCAGAGACTGAGGAGTGTCGAACCTATGACAATTGA MATISGLNLSSPRILAKAAETPKLQAINSGWLHSQWKQSPRFRAMRLRVPPVHAAPDKISDKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKKESDPLETYCKDNPETEECRTYDN Homology
BLAST of Sed0021409 vs. NCBI nr
Match: XP_022155326.1 (calvin cycle protein CP12-2, chloroplastic-like [Momordica charantia]) HSP 1 Score: 235.3 bits (599), Expect = 2.8e-58 Identity = 116/128 (90.62%), Postives = 122/128 (95.31%), Query Frame = 0
BLAST of Sed0021409 vs. NCBI nr
Match: XP_008454293.1 (PREDICTED: calvin cycle protein CP12-2, chloroplastic [Cucumis melo] >KAA0044414.1 calvin cycle protein CP12-2 [Cucumis melo var. makuwa] >TYK29541.1 calvin cycle protein CP12-2 [Cucumis melo var. makuwa]) HSP 1 Score: 227.6 bits (579), Expect = 5.9e-56 Identity = 113/128 (88.28%), Postives = 119/128 (92.97%), Query Frame = 0
BLAST of Sed0021409 vs. NCBI nr
Match: XP_004152225.1 (calvin cycle protein CP12-2, chloroplastic [Cucumis sativus] >KGN52853.1 hypothetical protein Csa_014965 [Cucumis sativus]) HSP 1 Score: 226.5 bits (576), Expect = 1.3e-55 Identity = 112/128 (87.50%), Postives = 120/128 (93.75%), Query Frame = 0
BLAST of Sed0021409 vs. NCBI nr
Match: XP_022934393.1 (calvin cycle protein CP12-2, chloroplastic-like [Cucurbita moschata] >XP_022984077.1 calvin cycle protein CP12-2, chloroplastic-like [Cucurbita maxima] >KAG6581299.1 Calvin cycle protein CP12-2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018019.1 Calvin cycle protein CP12-2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 224.9 bits (572), Expect = 3.8e-55 Identity = 113/128 (88.28%), Postives = 119/128 (92.97%), Query Frame = 0
BLAST of Sed0021409 vs. NCBI nr
Match: XP_038903303.1 (calvin cycle protein CP12-1, chloroplastic-like [Benincasa hispida]) HSP 1 Score: 223.0 bits (567), Expect = 1.5e-54 Identity = 113/128 (88.28%), Postives = 118/128 (92.19%), Query Frame = 0
BLAST of Sed0021409 vs. ExPASy Swiss-Prot
Match: Q9LZP9 (Calvin cycle protein CP12-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP12-2 PE=1 SV=1) HSP 1 Score: 134.8 bits (338), Expect = 6.9e-31 Identity = 77/132 (58.33%), Postives = 93/132 (70.45%), Query Frame = 0
BLAST of Sed0021409 vs. ExPASy Swiss-Prot
Match: O22914 (Calvin cycle protein CP12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP12-1 PE=1 SV=1) HSP 1 Score: 124.4 bits (311), Expect = 9.3e-28 Identity = 72/132 (54.55%), Postives = 92/132 (69.70%), Query Frame = 0
BLAST of Sed0021409 vs. ExPASy Swiss-Prot
Match: Q9C9K2 (Calvin cycle protein CP12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP12-3 PE=1 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 2.4e-12 Identity = 35/74 (47.30%), Postives = 52/74 (70.27%), Query Frame = 0
BLAST of Sed0021409 vs. ExPASy Swiss-Prot
Match: A6Q0K5 (Calvin cycle protein CP12, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=CP12 PE=1 SV=2) HSP 1 Score: 72.0 bits (175), Expect = 5.5e-12 Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = 0
BLAST of Sed0021409 vs. ExPASy TrEMBL
Match: A0A6J1DRE1 (calvin cycle protein CP12-2, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111022459 PE=4 SV=1) HSP 1 Score: 235.3 bits (599), Expect = 1.4e-58 Identity = 116/128 (90.62%), Postives = 122/128 (95.31%), Query Frame = 0
BLAST of Sed0021409 vs. ExPASy TrEMBL
Match: A0A5D3E1R4 (Calvin cycle protein CP12-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001450 PE=4 SV=1) HSP 1 Score: 227.6 bits (579), Expect = 2.9e-56 Identity = 113/128 (88.28%), Postives = 119/128 (92.97%), Query Frame = 0
BLAST of Sed0021409 vs. ExPASy TrEMBL
Match: A0A1S3BZH5 (calvin cycle protein CP12-2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103494733 PE=4 SV=1) HSP 1 Score: 227.6 bits (579), Expect = 2.9e-56 Identity = 113/128 (88.28%), Postives = 119/128 (92.97%), Query Frame = 0
BLAST of Sed0021409 vs. ExPASy TrEMBL
Match: A0A0A0KTG0 (Chloroplast protein 12 OS=Cucumis sativus OX=3659 GN=Csa_4G003670 PE=4 SV=1) HSP 1 Score: 226.5 bits (576), Expect = 6.4e-56 Identity = 112/128 (87.50%), Postives = 120/128 (93.75%), Query Frame = 0
BLAST of Sed0021409 vs. ExPASy TrEMBL
Match: A0A6J1J155 (calvin cycle protein CP12-2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111482497 PE=4 SV=1) HSP 1 Score: 224.9 bits (572), Expect = 1.9e-55 Identity = 113/128 (88.28%), Postives = 119/128 (92.97%), Query Frame = 0
BLAST of Sed0021409 vs. TAIR 10
Match: AT3G62410.1 (CP12 domain-containing protein 2 ) HSP 1 Score: 134.8 bits (338), Expect = 4.9e-32 Identity = 77/132 (58.33%), Postives = 93/132 (70.45%), Query Frame = 0
BLAST of Sed0021409 vs. TAIR 10
Match: AT2G47400.1 (CP12 domain-containing protein 1 ) HSP 1 Score: 124.4 bits (311), Expect = 6.6e-29 Identity = 72/132 (54.55%), Postives = 92/132 (69.70%), Query Frame = 0
BLAST of Sed0021409 vs. TAIR 10
Match: AT1G76560.1 (CP12 domain-containing protein 3 ) HSP 1 Score: 73.2 bits (178), Expect = 1.7e-13 Identity = 35/74 (47.30%), Postives = 52/74 (70.27%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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