Sed0021146 (gene) Chayote v1

Overview


Name	Sed0021146
Type	gene
Organism	Sechium edule (Chayote v1)
Description	upstream activation factor subunit UAF30-like
Location	LG01: 748060 .. 751624 (+)
RNA-Seq Expression	Sed0021146
Synteny	Sed0021146

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATTTATTGGAAACAAGGGTAACCACGCTCGTCCCTAGGCTAGGTATCGAAAATATCGAAAGAGTAATGTCACAGGTAAGTTTTGAATCTGAGACTTTGAGGGGAGCATGTTCTTAAAGCCCAAATCTTCAATTTTTGTGTCACCTCTTTCGGCAATGTAAAACAATGGCAAATATGTTGCCAGACCTTAGACTTTTTGAATTTCAGGCTGGGCAGTAACTTTCTCTTATTTGCAGTTACAACAATTTGTCTTAAGTCCAGTCACTGAGGTGTTTTCCTTCTTCTAATGCCTTAATGTTGGGCAGAATCTTTACCATTTGCTATTTCATTAATCCTATAGCAGAGACTTTTGGGAGACTTTGCTTCAGGATTATGAATTCCATGGCTACAAAACATTTGTTTTCAATCTACTTTGTAGCCTCAGTCTAAGAAGGTTGGAAAAAGTTTATGAATCAACACTGCCAAATCTCTGGTGTGGGCATTTGGGTTGAAAGGAATCACCCACTATTTGAGAACAAATAAGTTTCTTGGGAGGAAATACTTGAGATATTAAGTACGGTTGAACACAACTTTTATGTGGTAAACAGTAAACACCGACACTTTATATTAAGACTACTTAAAAGAGATTACAAGACTAGTGTTTAGGACACACACTACAAAATCAAGCTAGAACTCTTTGAAGACACTTTGTAGGACACTACAACACTTCTTTTTCTCTTGGATGCAAAATATGGTGGAGTGGAAGAGTATTTATAGTATGAGCTAGACAATGTAGATCACACATTTGTCTAGAGTATTCCTAAAAATATCTAAATGCTTACCACTTTTTAGGACATTCAAGTAACTCTAAAATTCTAAATACTTGTATAATTTTCTAAGAAACTTGTAGGCTATAGGTTTCTACTCAAAATGGGCTAATAAATACTTTTCTCGATGATTGGGCCCCTATAATTATTGGACTATCTTTGAATGGGCTAGAGATGAACTTTTAACAAGTACCACACAGCTTCATGGGTGCTCGTGCTACTTTAATAGATTTCTGCAAAGATTCAACTTTTGATGTTAAATCTTGTTGTTGGTTTTTTTTTTTTTTTTTACAATTCTCTGATCAGATGGTGTTATTACCTTTACCTTCGGGCTTCTCAGTTTGGGGGTTTCTAGTTCCTATAAAGAGAGTTTTTGGTGGTAACTTTTCATATATAAATGAAATTTTATGTTTTTGTAAGAGAAAAAGAAGACTATAAAAAATTCTCTGTGAGACCACTTTTGACGAATGGATTATTGATCTTTGTAAGGCAGTCCTAACAAGCTTGGTGAAGAGGTGAAGAAAAGAGGAGGGGGTGGTTTTAACTGCAAGAATTTATAGGAGTTCCTGAAATGCCAAGGACTGAGGGGTATCTAGAAAGTAACTTTTACCCCTTTTTTTTAATCTCAATCTTCTCAATATGCCATTGAAGATAATGTGTTGTCCTTTTCTTCTCCTTCTAATACCATTATTGCATCTTTATTACAGGTTGTGAAGCAACTATGGAAACACATTAGAAGAATATGCAAGACCCCAGTAACAGGAGAAATATTCTCTGTGATGAACCATTAAAAGCACTATTTAGTGCGAATTCCATCGACATGTTCCAAATGAATAAAGCTCTATCGAAGCATATCTGGCCGTTGGAATCAAATGACCGTGTGTAGCTATATCTTTGCTTTCGTGGGGCAATGGTTAAAAACTTGGGCTTTGAGGGTATGCTCCCCTCAAAGTCTCGAGTTCAAGTCTTCCCCGTGACAGTACTCCTCTGATGTCTCCGGTGCCTCGCCTAGGGATGAGCGTGATTACCCTTGTTTAAAAAAAAAAGCAATTTCTTTTTAACCTAATAGGTACAAAGACACTTTATTATTATGAAAGAAAGTTTTAGTCTGCATGGCACCTTGAAGGCTAATGCCTGCCAATGCAAACCCTGAACTTTGTTCTGATGAAACTGAACTACAAATCTTATTGAACTTTGTTCTTTCAATATCTTTTCTTTTACCTGAATACAGTTATTCCAGTCAAGTCAAATCAGAAGGAAAAGAAGCAAAAAGAACAACAGCTAAAGGAGAAGCCACAGAAGAAGCAAGGAAGAGAAGAAGGTACATAATTAATTACAACTTGACCTCATCTTAAAATGGGAAAGGGTGCCATTCTTTAGTGTTTTTTTATGACTCGGGAACTTGGAGCTTGTCCCTAGACTATGGCATCGAGATACATCGTAGGACTGGAAGTGAAATTGAGGATCCCCTAGAAAATTAATCTCCACAGCTGCCTCAAACTTGGGATCCTTGAGGGGAGCACACTCTCAAAGCCCAAACATTCAACCATTGCGCCACTCCTAGGGAATCCATTCTTGAATTAAAAAAGGTAAATATTTAACATCCAAATATTGTAGGGTCAGACAGGTATAAAAAAAAAAATTCTCACTCCAAGAACCGTGGATATTCTTTGTTTATTACTCAACAAAAAAAAATGTTAACATCATCCCAGTTCAGTCTACTGAACAAATTTGGAGGCTCTGAAAATTCATTCTTCATAATGGAAATTTGAAAAGAGAAATGGAGTTCTGCCAACAAAAACAATAGCTTAGCGGCATAAGCGTGTGTCTATGAACTAAAAGATGATGAGTTCAAATCTCCTCGCTCCAATTATTGTTTGAACTAAAAAATATGGCATTCTTCCTCTTGTAGTTCTGGCACTGGGCGACTGTGGATATTCTCCGCTTATTATTCTTAATTTTACTGATACTCCATGATCCAGAAGTATAGTTAAAATGAACATTTTAAAAAAGTTTTGATGCTTTAATGATTGTGCAAGACGAATGTTGATTATGAGCATAAAAATTATTGATGATGCATCATTTAACATCTTCTGAATTTTTTCTTGGATCATTCATGAAGGACCCTTCTGACAAAAGGAGAATAATTTGCGACGAGTAGCTAAAGGACCTATTCGATGTCGATTCGTTTAACGGCTTCACTGTTTCGAAACTCCTGGCCGTTCATTTTTGTAAAGAAGGCTAAATAGTGAGTTTCTCCTACACAATGGTCTTTGTTGATGCAAGTGAATGTGGAATTTTGCTTTAAATAATAACTATAGTGGAGTAGCCTAGTAGTCGAGATGACTTTGGAGAGCTAAGAGGTGATGAGCCTTAATTCTTGGTCATCACCTACTTAGGAATAAGTTTTCTACAAATTTTTTTGACATTCAAATGTCGAAGGATCATGCAGAATGTTACGTAATATTAGTCAAAATATACGTAAGCTGGTTAAGACAATCACCGATATAAAAAAAAATTGCTCCAGATAGTTTTAGTTTCCTCCTGTGGCTGTATTATTCTCTGTAATTCACCAACAAGGCAATGTAAAATTAGTTTTTATTGAAAATGTGGTATCTCTTCTCTTCAACTTTGAGATGCTTTTTATTGCGTTCTTTTAGTGGGTGGTGTGTGTTGCAAAATCCTTTCTTTAAAATCAAATGGACTAACCATATCAAATCTTTTCTATTCTTTTTTTAGCTTCTTGCGGCAACTAA

mRNA sequence

ATGTATTTATTGGAAACAAGGGTAACCACGCTCGTCCCTAGGCTAGGTATCGAAAATATCGAAAGAGTAATGTCACAGGTAAGTTTTGAATCTGAGACTTTGAGGGGAGCATGCAGTCCTAACAAGCTTGGTGAAGAGGTGAAGAAAAGAGGAGGGGGTGACCCCAGTAACAGGAGAAATATTCTCTGTGATGAACCATTAAAAGCACTATTTAGTGCGAATTCCATCGACATGTTCCAAATGAATAAAGCTCTATCGAAGCATATCTGGCCGTTGGAATCAAATGACCTTATTCCAGTCAAGTCAAATCAGAAGGAAAAGAAGCAAAAAGAACAACAGCTAAAGGAGAAGCCACAGAAGAAGCAAGGAAGAGAAGAAGCTTCTTGCGGCAACTAA

Coding sequence (CDS)

ATGTATTTATTGGAAACAAGGGTAACCACGCTCGTCCCTAGGCTAGGTATCGAAAATATCGAAAGAGTAATGTCACAGGTAAGTTTTGAATCTGAGACTTTGAGGGGAGCATGCAGTCCTAACAAGCTTGGTGAAGAGGTGAAGAAAAGAGGAGGGGGTGACCCCAGTAACAGGAGAAATATTCTCTGTGATGAACCATTAAAAGCACTATTTAGTGCGAATTCCATCGACATGTTCCAAATGAATAAAGCTCTATCGAAGCATATCTGGCCGTTGGAATCAAATGACCTTATTCCAGTCAAGTCAAATCAGAAGGAAAAGAAGCAAAAAGAACAACAGCTAAAGGAGAAGCCACAGAAGAAGCAAGGAAGAGAAGAAGCTTCTTGCGGCAACTAA

Protein sequence

MYLLETRVTTLVPRLGIENIERVMSQVSFESETLRGACSPNKLGEEVKKRGGGDPSNRRNILCDEPLKALFSANSIDMFQMNKALSKHIWPLESNDLIPVKSNQKEKKQKEQQLKEKPQKKQGREEASCGN

Homology

[Close]

BLAST of Sed0021146 vs. NCBI nr
Match: XP_008457882.1 (PREDICTED: upstream activation factor subunit UAF30-like [Cucumis melo])

HSP 1 Score: 119.4 bits (298), Expect = 2.3e-23
Identity = 65/90 (72.22%), Postives = 75/90 (83.33%), Query Frame = 0


Query: 42  KLGEEVKKRGGGDPSNRRNILCDEPLKALFSANSIDMFQMNKALSKHIWPLESNDLIPVK 101
           +L   +++    DPSNRRNILCDEPLKALF  NSI+MFQMNKALSKHIWPLESND+IP K
Sbjct: 145 QLWNHIRENNLQDPSNRRNILCDEPLKALFGVNSINMFQMNKALSKHIWPLESNDVIPAK 204

Query: 102 SNQKEKKQKEQQLKEKPQK---KQGREEAS 129
           S+QKEK+QKE+Q KEKPQK   KQG+EE S
Sbjct: 205 SSQKEKQQKEKQPKEKPQKKRQKQGKEEDS 234

[Close]

BLAST of Sed0021146 vs. NCBI nr
Match: TYK13709.1 (upstream activation factor subunit UAF30-like [Cucumis melo var. makuwa])

HSP 1 Score: 119.4 bits (298), Expect = 2.3e-23
Identity = 65/90 (72.22%), Postives = 75/90 (83.33%), Query Frame = 0


Query: 42  KLGEEVKKRGGGDPSNRRNILCDEPLKALFSANSIDMFQMNKALSKHIWPLESNDLIPVK 101
           +L   +++    DPSNRRNILCDEPLKALF  NSI+MFQMNKALSKHIWPLESND+IP K
Sbjct: 145 QLWNHIRENNLQDPSNRRNILCDEPLKALFGVNSINMFQMNKALSKHIWPLESNDVIPAK 204

Query: 102 SNQKEKKQKEQQLKEKPQK---KQGREEAS 129
           S+QKEK+QKE+Q KEKPQK   KQG+EE S
Sbjct: 205 SSQKEKQQKEKQPKEKPQKKRQKQGKEEDS 234

[Close]

BLAST of Sed0021146 vs. NCBI nr
Match: XP_004148436.1 (upstream activation factor subunit UAF30 [Cucumis sativus] >KGN62068.1 hypothetical protein Csa_006385 [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 4.0e-23
Identity = 65/90 (72.22%), Postives = 74/90 (82.22%), Query Frame = 0


Query: 42  KLGEEVKKRGGGDPSNRRNILCDEPLKALFSANSIDMFQMNKALSKHIWPLESNDLIPVK 101
           +L   +++    DPSNRRNILCDEPLKALF  NSI+MFQMNKALSKHIWPLESND+IP K
Sbjct: 145 QLWNHIRENNLQDPSNRRNILCDEPLKALFGVNSINMFQMNKALSKHIWPLESNDVIPAK 204

Query: 102 SNQKEKKQKEQQLKEKPQK---KQGREEAS 129
           S+QKEK QKE+Q KEKPQK   KQG+EE S
Sbjct: 205 SSQKEKPQKEKQPKEKPQKKRQKQGKEEDS 234

[Close]

BLAST of Sed0021146 vs. NCBI nr
Match: XP_038901460.1 (upstream activation factor subunit spp27-like isoform X1 [Benincasa hispida])

HSP 1 Score: 114.0 bits (284), Expect = 9.8e-22
Identity = 72/137 (52.55%), Postives = 81/137 (59.12%), Query Frame = 0


Query: 35  RGACSPNKLGEEVKKRGGG----------------------------------------D 94
           +G    NKL +E KKRGGG                                        D
Sbjct: 103 KGKAGSNKLSKEGKKRGGGGFSKLCSLSPQLQEFIGAPEMARTEVVKQLWNHIRGKNLQD 162

Query: 95  PSNRRNILCDEPLKALFSANSIDMFQMNKALSKHIWPLESNDLIPVKSNQKEKKQKEQQL 129
           PSNRRNILCD+ LKALF  NSI+MFQMNKALSKHIWPLESND+IP  S+QKEK+QKE+Q 
Sbjct: 163 PSNRRNILCDDSLKALFGVNSINMFQMNKALSKHIWPLESNDVIPANSSQKEKQQKEKQP 222

[Close]

BLAST of Sed0021146 vs. NCBI nr
Match: XP_038901461.1 (protein TRI1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 114.0 bits (284), Expect = 9.8e-22
Identity = 72/137 (52.55%), Postives = 81/137 (59.12%), Query Frame = 0


Query: 35  RGACSPNKLGEEVKKRGGG----------------------------------------D 94
           +G    NKL +E KKRGGG                                        D
Sbjct: 103 KGKAGSNKLSKEGKKRGGGGFSKLCSLSPQLQEFIGAPEMARTEVVKQLWNHIRGKNLQD 162

Query: 95  PSNRRNILCDEPLKALFSANSIDMFQMNKALSKHIWPLESNDLIPVKSNQKEKKQKEQQL 129
           PSNRRNILCD+ LKALF  NSI+MFQMNKALSKHIWPLESND+IP  S+QKEK+QKE+Q 
Sbjct: 163 PSNRRNILCDDSLKALFGVNSINMFQMNKALSKHIWPLESNDVIPANSSQKEKQQKEKQP 222

[Close]

BLAST of Sed0021146 vs. ExPASy TrEMBL
Match: A0A5D3CU37 (Upstream activation factor subunit UAF30-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G002330 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.1e-23
Identity = 65/90 (72.22%), Postives = 75/90 (83.33%), Query Frame = 0


Query: 42  KLGEEVKKRGGGDPSNRRNILCDEPLKALFSANSIDMFQMNKALSKHIWPLESNDLIPVK 101
           +L   +++    DPSNRRNILCDEPLKALF  NSI+MFQMNKALSKHIWPLESND+IP K
Sbjct: 145 QLWNHIRENNLQDPSNRRNILCDEPLKALFGVNSINMFQMNKALSKHIWPLESNDVIPAK 204

Query: 102 SNQKEKKQKEQQLKEKPQK---KQGREEAS 129
           S+QKEK+QKE+Q KEKPQK   KQG+EE S
Sbjct: 205 SSQKEKQQKEKQPKEKPQKKRQKQGKEEDS 234

[Close]

BLAST of Sed0021146 vs. ExPASy TrEMBL
Match: A0A1S3C766 (upstream activation factor subunit UAF30-like OS=Cucumis melo OX=3656 GN=LOC103497460 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.1e-23
Identity = 65/90 (72.22%), Postives = 75/90 (83.33%), Query Frame = 0


Query: 42  KLGEEVKKRGGGDPSNRRNILCDEPLKALFSANSIDMFQMNKALSKHIWPLESNDLIPVK 101
           +L   +++    DPSNRRNILCDEPLKALF  NSI+MFQMNKALSKHIWPLESND+IP K
Sbjct: 145 QLWNHIRENNLQDPSNRRNILCDEPLKALFGVNSINMFQMNKALSKHIWPLESNDVIPAK 204

Query: 102 SNQKEKKQKEQQLKEKPQK---KQGREEAS 129
           S+QKEK+QKE+Q KEKPQK   KQG+EE S
Sbjct: 205 SSQKEKQQKEKQPKEKPQKKRQKQGKEEDS 234

[Close]

BLAST of Sed0021146 vs. ExPASy TrEMBL
Match: A0A0A0LJW7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G295440 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.9e-23
Identity = 65/90 (72.22%), Postives = 74/90 (82.22%), Query Frame = 0


Query: 42  KLGEEVKKRGGGDPSNRRNILCDEPLKALFSANSIDMFQMNKALSKHIWPLESNDLIPVK 101
           +L   +++    DPSNRRNILCDEPLKALF  NSI+MFQMNKALSKHIWPLESND+IP K
Sbjct: 145 QLWNHIRENNLQDPSNRRNILCDEPLKALFGVNSINMFQMNKALSKHIWPLESNDVIPAK 204

Query: 102 SNQKEKKQKEQQLKEKPQK---KQGREEAS 129
           S+QKEK QKE+Q KEKPQK   KQG+EE S
Sbjct: 205 SSQKEKPQKEKQPKEKPQKKRQKQGKEEDS 234

[Close]

BLAST of Sed0021146 vs. ExPASy TrEMBL
Match: A0A6J1L2C3 (upstream activation factor subunit UAF30-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499765 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 4.7e-22
Identity = 69/143 (48.25%), Postives = 87/143 (60.84%), Query Frame = 0


Query: 28  SFESETLRGACSPNKLGEEVKKRGGG---------------------------------- 87
           +++ +  +     N++G+EVKKRGGG                                  
Sbjct: 96  NYDDDDGKSKTGSNEIGKEVKKRGGGFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIR 155

Query: 88  -----DPSNRRNILCDEPLKALFSANSIDMFQMNKALSKHIWPLESNDLIPVKSNQKEKK 132
                DPSNRRNILCDEPLKALF  NSI+MFQMNKALSKHIWPLESND+ P KS+QKEK+
Sbjct: 156 EKNLQDPSNRRNILCDEPLKALFGVNSINMFQMNKALSKHIWPLESNDVTPAKSSQKEKQ 215

[Close]

BLAST of Sed0021146 vs. ExPASy TrEMBL
Match: A0A6J1G606 (upstream activation factor subunit UAF30-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451187 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 6.2e-22
Identity = 69/140 (49.29%), Postives = 83/140 (59.29%), Query Frame = 0


Query: 28  SFESETLRGACSPNKLGEEVKKRGGG---------------------------------- 87
           ++  +  +     N+LG+EVKKRGGG                                  
Sbjct: 95  NYNDDDRKSKTGSNELGKEVKKRGGGFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIR 154

Query: 88  -----DPSNRRNILCDEPLKALFSANSIDMFQMNKALSKHIWPLESNDLIPVKSNQKEKK 129
                DPSNRRNILCDEP KALF  NSIDMFQMNKALSKHIWPLESND+ P KS+QKEK+
Sbjct: 155 EKNLQDPSNRRNILCDEPFKALFGVNSIDMFQMNKALSKHIWPLESNDVTPAKSSQKEKQ 214

[Close]

BLAST of Sed0021146 vs. TAIR 10
Match: AT3G19080.1 (SWIB complex BAF60b domain-containing protein )

HSP 1 Score: 61.2 bits (147), Expect = 7.0e-10
Identity = 39/89 (43.82%), Postives = 58/89 (65.17%), Query Frame = 0


Query: 43  LGEEVKKRGGGDPSNRRNILCDEPLKALFSANSIDMFQMNKALSKHIWPLESN--DLIPV 102
           L + +K+    DP+++R+I+CDE  ++LF   SI+MFQMNK L+KHIWPLE N  + +  
Sbjct: 292 LWKYIKENNLQDPNDKRSIICDESFRSLFPVESINMFQMNKQLTKHIWPLEDNAGESVSS 351

Query: 103 KS--NQKEKKQ-----KEQQLKEKPQKKQ 123
           KS  N K+K +     +E   K+K QKK+
Sbjct: 352 KSPKNGKQKMESDGDSEEPNEKDKKQKKE 380

[Close]

BLAST of Sed0021146 vs. TAIR 10
Match: AT1G49520.1 (SWIB complex BAF60b domain-containing protein )

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-09
Identity = 34/86 (39.53%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 43  LGEEVKKRGGGDPSNRRNILCDEPLKALFSANSIDMFQMNKALSKHIWPLESNDLIPVKS 102
           L + +K+    DPS++R I+CDE L++LF   SI+MFQMNK L+KHIWPL   D     +
Sbjct: 279 LWKYIKENNLQDPSDKRTIICDESLRSLFPVESINMFQMNKQLAKHIWPLVQEDEAGTTN 338

Query: 103 NQKEKKQKEQQLKEKPQKKQGREEAS 129
           + ++ KQK +   ++   +   E+A+
Sbjct: 339 DPEKGKQKMKMETDEDNDESNEEKAT 364

[Close]

BLAST of Sed0021146 vs. TAIR 10
Match: AT4G22360.1 (SWIB complex BAF60b domain-containing protein )

HSP 1 Score: 54.3 bits (129), Expect = 8.6e-08
Identity = 28/66 (42.42%), Postives = 42/66 (63.64%), Query Frame = 0


Query: 47  VKKRGGGDPSNRRNILCDEPLKALFSANSIDMFQMNKALSKHIWPLESNDLIPVKSNQKE 106
           ++K    DPSN+R I+CD+ L+ +F  +  DMF+MNK L+KHI PL+     P K + + 
Sbjct: 229 IRKNNLQDPSNKRKIICDDALRVVFETDCTDMFKMNKLLAKHILPLD-----PSKDSGQA 288

Query: 107 KKQKEQ 113
           KK K +
Sbjct: 289 KKAKTE 289

The following BLAST results are available for this feature:

BLAST of Sed0021146 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457882.1	2.3e-23	72.22	PREDICTED: upstream activation factor subunit UAF30-like [Cucumis melo]	[more]
TYK13709.1	2.3e-23	72.22	upstream activation factor subunit UAF30-like [Cucumis melo var. makuwa]	[more]
XP_004148436.1	4.0e-23	72.22	upstream activation factor subunit UAF30 [Cucumis sativus] >KGN62068.1 hypotheti...	[more]
XP_038901460.1	9.8e-22	52.55	upstream activation factor subunit spp27-like isoform X1 [Benincasa hispida]	[more]
XP_038901461.1	9.8e-22	52.55	protein TRI1-like isoform X2 [Benincasa hispida]	[more]

BLAST of Sed0021146 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0021146 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CU37	1.1e-23	72.22	Upstream activation factor subunit UAF30-like OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3C766	1.1e-23	72.22	upstream activation factor subunit UAF30-like OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A0A0LJW7	1.9e-23	72.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G295440 PE=4 SV=1	[more]
A0A6J1L2C3	4.7e-22	48.25	upstream activation factor subunit UAF30-like isoform X1 OS=Cucurbita maxima OX=...	[more]
A0A6J1G606	6.2e-22	49.29	upstream activation factor subunit UAF30-like isoform X1 OS=Cucurbita moschata O...	[more]

BLAST of Sed0021146 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19080.1	7.0e-10	43.82	SWIB complex BAF60b domain-containing protein	[more]
AT1G49520.1	1.2e-09	39.53	SWIB complex BAF60b domain-containing protein	[more]
AT4G22360.1	8.6e-08	42.42	SWIB complex BAF60b domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019835	SWIB domain	SMART	SM00151	swib_2	coord: 20..94 e-value: 0.0011 score: 19.8
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 44..89 e-value: 1.4E-11 score: 44.1
IPR003121	SWIB/MDM2 domain	PROSITE	PS51925	SWIB_MDM2	coord: 9..91 score: 11.326416
IPR036885	SWIB/MDM2 domain superfamily	GENE3D	1.10.245.10	SWIB/MDM2 domain	coord: 23..97 e-value: 2.2E-12 score: 48.6
IPR036885	SWIB/MDM2 domain superfamily	SUPERFAMILY	47592	SWIB/MDM2 domain	coord: 47..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..131
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..124
None	No IPR available	PANTHER	PTHR13844:SF53	SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN	coord: 53..123
None	No IPR available	PANTHER	PTHR13844	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D	coord: 53..123
None	No IPR available	CDD	cd10567	SWIB-MDM2_like	coord: 42..89 e-value: 2.05881E-15 score: 64.1017

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0021146.1	Sed0021146.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus