Sed0020996 (gene) Chayote v1

Overview


Name	Sed0020996
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG09: 22040654 .. 22040902 (-)
RNA-Seq Expression	Sed0020996
Synteny	Sed0020996

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCAAGATGGGAGAGATGGAGAGGAGATTAGTGAAGCTAGGTGGAGAGAAGCTCAAAGTGGGGTCATTAATCGTTTAACTCAAGTTGTTAATTCCTTAAGCGATAGGTTGGAGCGAATGGAAGTAGCTTTAGGAAATCCTCAAGGGAGGGAGGATAACTTTAATTATGAAGGAGTTGAAAATGAAGATGGAGAAGATAATGTTAACCTCTTAGCGGGATACAATCCACGGGAGGGAGAGTTTTAG

mRNA sequence

ATGAATCAAGATGGGAGAGATGGAGAGGAGATTAGTGAAGCTAGGTGGAGAGAAGCTCAAAGTGGGGTCATTAATCGTTTAACTCAAGTTGTTAATTCCTTAAGCGATAGGTTGGAGCGAATGGAAGTAGCTTTAGGAAATCCTCAAGGGAGGGAGGATAACTTTAATTATGAAGGAGTTGAAAATGAAGATGGAGAAGATAATGTTAACCTCTTAGCGGGATACAATCCACGGGAGGGAGAGTTTTAG

Coding sequence (CDS)

ATGAATCAAGATGGGAGAGATGGAGAGGAGATTAGTGAAGCTAGGTGGAGAGAAGCTCAAAGTGGGGTCATTAATCGTTTAACTCAAGTTGTTAATTCCTTAAGCGATAGGTTGGAGCGAATGGAAGTAGCTTTAGGAAATCCTCAAGGGAGGGAGGATAACTTTAATTATGAAGGAGTTGAAAATGAAGATGGAGAAGATAATGTTAACCTCTTAGCGGGATACAATCCACGGGAGGGAGAGTTTTAG

Protein sequence

MNQDGRDGEEISEARWREAQSGVINRLTQVVNSLSDRLERMEVALGNPQGREDNFNYEGVENEDGEDNVNLLAGYNPREGEF

Homology

[Close]

BLAST of Sed0020996 vs. NCBI nr
Match: XP_023534142.1 (uncharacterized protein LOC111795765 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 98.6 bits (244), Expect = 2.7e-17
Identity = 53/80 (66.25%), Postives = 66/80 (82.50%), Query Frame = 0


Query: 1  MNQDGRDGEEISEARWREAQSGVINRLTQVVNSLSDRLERMEVALGNPQGREDNFNYEGV 60
          MNQDG +G EI+EARWREAQ G I RL QV+++L+DR+ER+E+ALGN QGRE   N EGV
Sbjct: 1  MNQDGGNGGEINEARWREAQVGTITRLNQVISTLTDRMERIEIALGNLQGREVLLN-EGV 60

Query: 61 ENEDGEDNVNLLAGYNPREG 81
          ENE+ +DNV LLAG++PR G
Sbjct: 61 ENEE-DDNVTLLAGHSPRGG 78

[Close]

BLAST of Sed0020996 vs. NCBI nr
Match: XP_022929948.1 (uncharacterized protein LOC111436410 [Cucurbita moschata])

HSP 1 Score: 96.3 bits (238), Expect = 1.3e-16
Identity = 52/80 (65.00%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 1  MNQDGRDGEEISEARWREAQSGVINRLTQVVNSLSDRLERMEVALGNPQGREDNFNYEGV 60
          MNQDG +G EI+EARWREAQ G I  L QV+++L+DR+ER+E+ALGN QGRE   N EGV
Sbjct: 1  MNQDGGNGREINEARWREAQVGTITCLNQVISTLTDRMERIEIALGNLQGREVLLN-EGV 60

Query: 61 ENEDGEDNVNLLAGYNPREG 81
          ENE+ +DNV LLAG++PR G
Sbjct: 61 ENEE-DDNVTLLAGHSPRGG 78

[Close]

BLAST of Sed0020996 vs. NCBI nr
Match: XP_022925325.1 (uncharacterized protein LOC111432615 [Cucurbita moschata])

HSP 1 Score: 94.4 bits (233), Expect = 5.0e-16
Identity = 51/80 (63.75%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 1  MNQDGRDGEEISEARWREAQSGVINRLTQVVNSLSDRLERMEVALGNPQGREDNFNYEGV 60
          MNQD  +G EI+EARWREAQ G I RL QV+++L+DR+ER+++ALGN QGRE   N EGV
Sbjct: 1  MNQDEGNGGEINEARWREAQVGTITRLNQVISTLTDRMERIQIALGNLQGREVLLN-EGV 60

Query: 61 ENEDGEDNVNLLAGYNPREG 81
          ENE+ +DNV LLAG++PR G
Sbjct: 61 ENEE-DDNVTLLAGHSPRGG 78

[Close]

BLAST of Sed0020996 vs. NCBI nr
Match: XP_038888883.1 (uncharacterized protein LOC120078660 [Benincasa hispida])

HSP 1 Score: 75.1 bits (183), Expect = 3.1e-10
Identity = 46/78 (58.97%), Postives = 53/78 (67.95%), Query Frame = 0


Query: 1  MNQDGRDGEEISEARWREAQSGVINRLTQVVNSLSDRLERMEVALGNPQGREDNFNYEGV 60
          M+Q   D  E SEAR+REAQ GVI RLT+VV SL DR+ERMEVAL NPQ  E   N E  
Sbjct: 1  MSQGEGDRVETSEARYREAQVGVITRLTKVVKSLIDRVERMEVALRNPQQGEMGCN-EEF 60

Query: 61 ENEDGEDNVNLLAGYNPR 79
          +NE+ +DN  LL G N R
Sbjct: 61 DNEEDDDNETLLVGQNSR 77

[Close]

BLAST of Sed0020996 vs. NCBI nr
Match: KGN53741.1 (hypothetical protein Csa_015371 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 9.2e-10
Identity = 48/80 (60.00%), Postives = 53/80 (66.25%), Query Frame = 0


Query: 1  MNQDGRDGEEISEARWREAQSGVINRLTQVVNSLSDRLERMEVALGN-PQGREDNFNYEG 60
          MNQ  ++  EISEAR  EAQ G I RLTQV+N L+DRL+RM VAL N  QG   N   EG
Sbjct: 1  MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLN---EG 60

Query: 61 VENEDGEDNVNLLAGYNPRE 80
          VENE  EDN  LLA  NP E
Sbjct: 61 VENEKDEDNETLLARQNPTE 77

[Close]

BLAST of Sed0020996 vs. ExPASy TrEMBL
Match: A0A6J1ETN1 (uncharacterized protein LOC111436410 OS=Cucurbita moschata OX=3662 GN=LOC111436410 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 6.4e-17
Identity = 52/80 (65.00%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 1  MNQDGRDGEEISEARWREAQSGVINRLTQVVNSLSDRLERMEVALGNPQGREDNFNYEGV 60
          MNQDG +G EI+EARWREAQ G I  L QV+++L+DR+ER+E+ALGN QGRE   N EGV
Sbjct: 1  MNQDGGNGREINEARWREAQVGTITCLNQVISTLTDRMERIEIALGNLQGREVLLN-EGV 60

Query: 61 ENEDGEDNVNLLAGYNPREG 81
          ENE+ +DNV LLAG++PR G
Sbjct: 61 ENEE-DDNVTLLAGHSPRGG 78

[Close]

BLAST of Sed0020996 vs. ExPASy TrEMBL
Match: A0A6J1EHL9 (uncharacterized protein LOC111432615 OS=Cucurbita moschata OX=3662 GN=LOC111432615 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.4e-16
Identity = 51/80 (63.75%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 1  MNQDGRDGEEISEARWREAQSGVINRLTQVVNSLSDRLERMEVALGNPQGREDNFNYEGV 60
          MNQD  +G EI+EARWREAQ G I RL QV+++L+DR+ER+++ALGN QGRE   N EGV
Sbjct: 1  MNQDEGNGGEINEARWREAQVGTITRLNQVISTLTDRMERIQIALGNLQGREVLLN-EGV 60

Query: 61 ENEDGEDNVNLLAGYNPREG 81
          ENE+ +DNV LLAG++PR G
Sbjct: 61 ENEE-DDNVTLLAGHSPRGG 78

[Close]

BLAST of Sed0020996 vs. ExPASy TrEMBL
Match: A0A0A0L0S3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G114220 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.4e-10
Identity = 48/80 (60.00%), Postives = 53/80 (66.25%), Query Frame = 0


Query: 1  MNQDGRDGEEISEARWREAQSGVINRLTQVVNSLSDRLERMEVALGN-PQGREDNFNYEG 60
          MNQ  ++  EISEAR  EAQ G I RLTQV+N L+DRL+RM VAL N  QG   N   EG
Sbjct: 1  MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLN---EG 60

Query: 61 VENEDGEDNVNLLAGYNPRE 80
          VENE  EDN  LLA  NP E
Sbjct: 61 VENEKDEDNETLLARQNPTE 77

[Close]

BLAST of Sed0020996 vs. ExPASy TrEMBL
Match: A0A0A0KC00 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G235580 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.6e-10
Identity = 45/79 (56.96%), Postives = 55/79 (69.62%), Query Frame = 0


Query: 1  MNQDGRDGEEISEARWREAQSGVINRLTQVVNSLSDRLERMEVALGN-PQGREDNFNYEG 60
          MN+  ++  +ISEA+  EAQ G I RLTQV+N L++RL+RMEVAL N  QG   N   EG
Sbjct: 1  MNKKAKNDGKISEAKRIEAQGGAIVRLTQVINDLTNRLDRMEVALRNHHQGEVLN---EG 60

Query: 61 VENEDGEDNVNLLAGYNPR 79
          VENE+ EDN   LAG NPR
Sbjct: 61 VENEEDEDNETFLAGQNPR 76

The following BLAST results are available for this feature:

BLAST of Sed0020996 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023534142.1	2.7e-17	66.25	uncharacterized protein LOC111795765 [Cucurbita pepo subsp. pepo]	[more]
XP_022929948.1	1.3e-16	65.00	uncharacterized protein LOC111436410 [Cucurbita moschata]	[more]
XP_022925325.1	5.0e-16	63.75	uncharacterized protein LOC111432615 [Cucurbita moschata]	[more]
XP_038888883.1	3.1e-10	58.97	uncharacterized protein LOC120078660 [Benincasa hispida]	[more]
KGN53741.1	9.2e-10	60.00	hypothetical protein Csa_015371 [Cucumis sativus]	[more]

BLAST of Sed0020996 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0020996 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ETN1	6.4e-17	65.00	uncharacterized protein LOC111436410 OS=Cucurbita moschata OX=3662 GN=LOC1114364...	[more]
A0A6J1EHL9	2.4e-16	63.75	uncharacterized protein LOC111432615 OS=Cucurbita moschata OX=3662 GN=LOC1114326...	[more]
A0A0A0L0S3	4.4e-10	60.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G114220 PE=4 SV=1	[more]
A0A0A0KC00	7.6e-10	56.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G235580 PE=4 SV=1	[more]

BLAST of Sed0020996 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 24..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0020996.1	Sed0020996.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding