Sed0020981 (gene) Chayote v1

Overview
NameSed0020981
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG04: 4517926 .. 4518276 (+)
RNA-Seq ExpressionSed0020981
SyntenySed0020981
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACCCAGAAGTTTTTTAGTGCATCCATTGTTATTGTACTTGTATTTGCTTGCTTTATTTCATCAAGTATGTTCTTTTCTCACAACCCTAATCTACTTCAAATGTTTTTTTTAAAACAATATTATTTACAATGTTAATTCTTTGGTCATATGACAGCAAAAGGAGATATTGCAAAAGGAGATACATCAAAAACAGATATGTTCCTCAACTGTGTTCGACCATGTTCCGACACTTACGACGATGATTCATGCTATAACGATTGTCTTCGAGAGAACAACAATGCTGGATTTTGTTATCCCAAGCTATCTGATGTTACGACTGAAAAAGATTGTTGTTGCAATAATTAA

mRNA sequence

ATGGCAACCCAGAAGTTTTTTAGTGCATCCATTGTTATTGTACTTGTATTTGCTTGCTTTATTTCATCAACAAAAGGAGATATTGCAAAAGGAGATACATCAAAAACAGATATGTTCCTCAACTGTGTTCGACCATGTTCCGACACTTACGACGATGATTCATGCTATAACGATTGTCTTCGAGAGAACAACAATGCTGGATTTTGTTATCCCAAGCTATCTGATGTTACGACTGAAAAAGATTGTTGTTGCAATAATTAA

Coding sequence (CDS)

ATGGCAACCCAGAAGTTTTTTAGTGCATCCATTGTTATTGTACTTGTATTTGCTTGCTTTATTTCATCAACAAAAGGAGATATTGCAAAAGGAGATACATCAAAAACAGATATGTTCCTCAACTGTGTTCGACCATGTTCCGACACTTACGACGATGATTCATGCTATAACGATTGTCTTCGAGAGAACAACAATGCTGGATTTTGTTATCCCAAGCTATCTGATGTTACGACTGAAAAAGATTGTTGTTGCAATAATTAA

Protein sequence

MATQKFFSASIVIVLVFACFISSTKGDIAKGDTSKTDMFLNCVRPCSDTYDDDSCYNDCLRENNNAGFCYPKLSDVTTEKDCCCNN
Homology
BLAST of Sed0020981 vs. NCBI nr
Match: KAE8651697.1 (hypothetical protein Csa_006343 [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 5.4e-21
Identity = 51/85 (60.00%), Postives = 65/85 (76.47%), Query Frame = 0

Query: 1  MATQKFFSASIVIVLVFACFISSTKGDIAKGDTSKTDMFLNCVRPCSDTYDDDSCYNDCL 60
          MATQK  + SIV++++ AC +S+TKGD+         + +NCVRPCSDTYDD+SCYNDC+
Sbjct: 1  MATQKLATVSIVMLMILACIVSTTKGDV---------LNVNCVRPCSDTYDDESCYNDCI 60

Query: 61 RENNNAGFCYPKLSDVTTEKDCCCN 86
          REN  AGFCYPKL   +T+KDCCCN
Sbjct: 61 RENLGAGFCYPKLP--STDKDCCCN 74

BLAST of Sed0020981 vs. NCBI nr
Match: KGN61228.1 (hypothetical protein Csa_006463 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 2.7e-20
Identity = 50/85 (58.82%), Postives = 65/85 (76.47%), Query Frame = 0

Query: 1  MATQKFFSASIVIVLVFACFISSTKGDIAKGDTSKTDMFLNCVRPCSDTYDDDSCYNDCL 60
          MATQK  + SIV++++FAC  S+TKGD+         + ++CVRPCSDTYDD+SCYNDC+
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDV---------LNVHCVRPCSDTYDDESCYNDCI 60

Query: 61 RENNNAGFCYPKLSDVTTEKDCCCN 86
          +EN  AGFCYPKL   +T+KDCCCN
Sbjct: 61 QENLGAGFCYPKLP--STDKDCCCN 74

BLAST of Sed0020981 vs. NCBI nr
Match: KAG6586428.1 (hypothetical protein SDJN03_19161, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100.9 bits (250), Expect = 5.6e-18
Identity = 46/86 (53.49%), Postives = 59/86 (68.60%), Query Frame = 0

Query: 1  MATQKFFSASIVIVLVFACFISSTKGDIAKGDTSKTDMFLNCVRPCSDTYDDDSCYNDCL 60
          MA++K F+   +++++F  F SS KG          DMF+ C+RPC D +DDDSCY+DC+
Sbjct: 1  MASRKLFTVFAIVMMMF-YFASSAKG----------DMFMECIRPCVDAFDDDSCYDDCV 60

Query: 61 RENNNAGFCYPKLSDVTTEKDCCCNN 87
          R N  AGFCYPKL  VT EKDCCCNN
Sbjct: 61 RANKGAGFCYPKLPSVTNEKDCCCNN 75

BLAST of Sed0020981 vs. NCBI nr
Match: KAE8651701.1 (hypothetical protein Csa_006400, partial [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 4.2e-13
Identity = 37/58 (63.79%), Postives = 47/58 (81.03%), Query Frame = 0

Query: 28 IAKGDTSKTDMFLNCVRPCSDTYDDDSCYNDCLRENNNAGFCYPKLSDVTTEKDCCCN 86
          IAKGD     + ++CV+PCSDTYDD+SCYNDC++EN  AGFCYPKL   +T+KDCCC+
Sbjct: 13 IAKGDV----LNMHCVQPCSDTYDDESCYNDCIKENLGAGFCYPKLP--STDKDCCCS 64

BLAST of Sed0020981 vs. NCBI nr
Match: KGN54497.1 (hypothetical protein Csa_012842 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 2.1e-09
Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = 0

Query: 1  MATQKFFSASIVIVLVFACFISSTKGDIAKGDTSKTDMFLNCVRPCSDTYDDDSCYNDCL 60
          M TQK F  S+++ + F+CF SS +GD         D++ NCV PCS+   D  C   C+
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGD---------DLW-NCVIPCSNNNGDILCNTACI 60

Query: 61 RENNNAGFCYPKLSDVTTEKDCCCNN 87
           ++  AGFC PKL  ++  K CCCNN
Sbjct: 61 EQDEGAGFCVPKLPGISDMKVCCCNN 76

BLAST of Sed0020981 vs. ExPASy TrEMBL
Match: A0A0A0LHG9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.3e-20
Identity = 50/85 (58.82%), Postives = 65/85 (76.47%), Query Frame = 0

Query: 1  MATQKFFSASIVIVLVFACFISSTKGDIAKGDTSKTDMFLNCVRPCSDTYDDDSCYNDCL 60
          MATQK  + SIV++++FAC  S+TKGD+         + ++CVRPCSDTYDD+SCYNDC+
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDV---------LNVHCVRPCSDTYDDESCYNDCI 60

Query: 61 RENNNAGFCYPKLSDVTTEKDCCCN 86
          +EN  AGFCYPKL   +T+KDCCCN
Sbjct: 61 QENLGAGFCYPKLP--STDKDCCCN 74

BLAST of Sed0020981 vs. ExPASy TrEMBL
Match: A0A0A0LJG5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.9e-20
Identity = 49/86 (56.98%), Postives = 65/86 (75.58%), Query Frame = 0

Query: 1  MATQKFFSASIVIVLVFACFISSTKGDIAKGDTSKTDMFLNCVRPCSDTYDDDSCYNDCL 60
          MATQK  + SIV++++F C +S+TKGD+         + ++CVRPC DTYDD+SCYNDC+
Sbjct: 1  MATQKLATISIVVLVIFPCIVSTTKGDV---------LNVHCVRPCYDTYDDESCYNDCI 60

Query: 61 RENNNAGFCYPKLSDVTTEKDCCCNN 87
          REN  AGFCYPKL   +T+KDCCCN+
Sbjct: 61 RENLGAGFCYPKLP--STDKDCCCND 75

BLAST of Sed0020981 vs. ExPASy TrEMBL
Match: A0A0A0LKF5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.1e-14
Identity = 39/57 (68.42%), Postives = 46/57 (80.70%), Query Frame = 0

Query: 29 AKGDTSKTDMFLNCVRPCSDTYDDDSCYNDCLRENNNAGFCYPKLSDVTTEKDCCCN 86
          AKGD     + ++CVRPCSDTYDD+SCYNDC+REN  AGFCYPKL   +T+KDCCCN
Sbjct: 3  AKGDI----LNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLP--STDKDCCCN 53

BLAST of Sed0020981 vs. ExPASy TrEMBL
Match: A0A0A0L1R8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.0e-09
Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = 0

Query: 1  MATQKFFSASIVIVLVFACFISSTKGDIAKGDTSKTDMFLNCVRPCSDTYDDDSCYNDCL 60
          M TQK F  S+++ + F+CF SS +GD         D++ NCV PCS+   D  C   C+
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGD---------DLW-NCVIPCSNNNGDILCNTACI 60

Query: 61 RENNNAGFCYPKLSDVTTEKDCCCNN 87
           ++  AGFC PKL  ++  K CCCNN
Sbjct: 61 EQDEGAGFCVPKLPGISDMKVCCCNN 76

BLAST of Sed0020981 vs. ExPASy TrEMBL
Match: A0A5A7TJH1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1167G00010 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.5e-05
Identity = 31/84 (36.90%), Postives = 42/84 (50.00%), Query Frame = 0

Query: 1  MATQKFFSASIVIVLVFACFISSTKGDIAKGDTSKTDMFLNCVRPCSDTYDDDSCYNDCL 60
          M T+K     + I ++ ACF++ ++G              NC+RPCS+TY   SCY DC 
Sbjct: 1  MPTRKLLVVFVAITVLLACFVTLSEG----------QGLWNCIRPCSETYKSLSCYVDCG 60

Query: 61 RENNNAGFCYPKLSDVTTEKDCCC 85
            N   G C PK   V+ E  CCC
Sbjct: 61 ALNKGTGACIPK-RPVSDEYVCCC 73

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8651697.15.4e-2160.00hypothetical protein Csa_006343 [Cucumis sativus][more]
KGN61228.12.7e-2058.82hypothetical protein Csa_006463 [Cucumis sativus][more]
KAG6586428.15.6e-1853.49hypothetical protein SDJN03_19161, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8651701.14.2e-1363.79hypothetical protein Csa_006400, partial [Cucumis sativus][more]
KGN54497.12.1e-0941.86hypothetical protein Csa_012842 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LHG91.3e-2058.82Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1[more]
A0A0A0LJG52.9e-2056.98Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1[more]
A0A0A0LKF54.1e-1468.42Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1[more]
A0A0A0L1R81.0e-0941.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1[more]
A0A5A7TJH14.5e-0536.90Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..19
score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0020981.1Sed0020981.1mRNA