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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSexonpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGTCTCCGGCGAGTTTCCCGGCCAAATTTCTGGCTCTCATTTCCATCTTCCACCTCAACTCCACCATCTATGCCGACGACGCTGCCGTGGTTACACCTTTCCCATGCTCCAACTGCAACATTTGTCAATCCGCCTGCCGCCCACCGCCGTACGAGCCACCGCCACTGCCGCCATCGCCACCACCGTCGATTGCAGAGCCGGAGCCACTCCCGGTTCCGAACGCTCCCGCTAACTGCCCTCCCGCCGCTGTCCAGTGCTGCCCATTTATGCCTCTGCCGCCACCGCCACCGCCACCAGGGCCGCGGAATGGTTATATATACACGCCGCTTTATAATGAGTCGTCTTCTTCATTTTTGAAAGGTGGGTTGGTCTCTGTTTTGGGCCCTGTTTTTGGGTTGATCTTCATTTCCTAA mRNA sequence ATGTCTCCGGCGAGTTTCCCGGCCAAATTTCTGGCTCTCATTTCCATCTTCCACCTCAACTCCACCATCTATGCCGACGACGCTGCCGTGGTTACACCTTTCCCATGCTCCAACTGCAACATTTGTCAATCCGCCTGCCGCCCACCGCCGTACGAGCCACCGCCACTGCCGCCATCGCCACCACCGTCGATTGCAGAGCCGGAGCCACTCCCGGTTCCGAACGCTCCCGCTAACTGCCCTCCCGCCGCTGTCCAGTGCTGCCCATTTATGCCTCTGCCGCCACCGCCACCGCCACCAGGGCCGCGGAATGGTTATATATACACGCCGCTTTATAATGAGTCGTCTTCTTCATTTTTGAAAGGTGGGTTGGTCTCTGTTTTGGGCCCTGTTTTTGGGTTGATCTTCATTTCCTAA Coding sequence (CDS) ATGTCTCCGGCGAGTTTCCCGGCCAAATTTCTGGCTCTCATTTCCATCTTCCACCTCAACTCCACCATCTATGCCGACGACGCTGCCGTGGTTACACCTTTCCCATGCTCCAACTGCAACATTTGTCAATCCGCCTGCCGCCCACCGCCGTACGAGCCACCGCCACTGCCGCCATCGCCACCACCGTCGATTGCAGAGCCGGAGCCACTCCCGGTTCCGAACGCTCCCGCTAACTGCCCTCCCGCCGCTGTCCAGTGCTGCCCATTTATGCCTCTGCCGCCACCGCCACCGCCACCAGGGCCGCGGAATGGTTATATATACACGCCGCTTTATAATGAGTCGTCTTCTTCATTTTTGAAAGGTGGGTTGGTCTCTGTTTTGGGCCCTGTTTTTGGGTTGATCTTCATTTCCTAA Protein sequence MSPASFPAKFLALISIFHLNSTIYADDAAVVTPFPCSNCNICQSACRPPPYEPPPLPPSPPPSIAEPEPLPVPNAPANCPPAAVQCCPFMPLPPPPPPPGPRNGYIYTPLYNESSSSFLKGGLVSVLGPVFGLIFIS
Homology
BLAST of Sed0020838 vs. NCBI nr
Match: KAG7037325.1 (hypothetical protein SDJN02_00950, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 159.5 bits (402), Expect = 2.1e-35 Identity = 91/131 (69.47%), Postives = 97/131 (74.05%), Query Frame = 0
Query: 7 PAKFLALISIFHLNSTI-YADDAAVVTPFPCSNCNICQSACRPPPYEPPPLPPSPPPSIA 66
PAKFLAL+ +FHL S I ADDA++ TP C NC +CQSACRPPP P LPP PPP IA
Sbjct: 3 PAKFLALVIVFHLKSAITAADDASMPTPTSCENCALCQSACRPPPDAQPLLPPPPPPPIA 62
Query: 67 EPEPLPVPNAPANCPPAAVQCCPFMPLPPPPPPPGPRNGYIYTPLYNESSSSFLKGGLVS 126
EPEPLPVP PANCPP VQCC FMP P PPPPP N IYTP YNES SSFLK GLVS
Sbjct: 63 EPEPLPVPVPPANCPPTIVQCCQFMPPPAPPPPPNGNN--IYTPFYNESCSSFLKRGLVS 122
Query: 127 VLGPVFGLIFI 137
VL PVFG+ I
Sbjct: 123 VLAPVFGVAAI 131
BLAST of Sed0020838 vs. NCBI nr
Match: KAG6607747.1 (hypothetical protein SDJN03_01089, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 157.9 bits (398), Expect = 6.2e-35 Identity = 90/131 (68.70%), Postives = 96/131 (73.28%), Query Frame = 0
Query: 7 PAKFLALISIFHLNSTI-YADDAAVVTPFPCSNCNICQSACRPPPYEPPPLPPSPPPSIA 66
PAKFLAL+ +FHL S I ADDA++ TP C NC +CQSACRPPP P LPP PPP IA
Sbjct: 3 PAKFLALVIVFHLKSAITAADDASMPTPTSCENCALCQSACRPPPDAQPLLPPPPPPPIA 62
Query: 67 EPEPLPVPNAPANCPPAAVQCCPFMPLPPPPPPPGPRNGYIYTPLYNESSSSFLKGGLVS 126
EPEPLPVP P NCPP VQCC FMP P PPPPP N IYTP YNES SSFLK GLVS
Sbjct: 63 EPEPLPVPVPPGNCPPTIVQCCQFMPPPAPPPPPNGNN--IYTPFYNESCSSFLKRGLVS 122
Query: 127 VLGPVFGLIFI 137
VL PVFG+ I
Sbjct: 123 VLAPVFGVAAI 131
BLAST of Sed0020838 vs. NCBI nr
Match: XP_008463043.1 (PREDICTED: sperm mitochondrial-associated cysteine-rich protein-like [Cucumis melo]) HSP 1 Score: 156.0 bits (393), Expect = 2.3e-34 Identity = 88/135 (65.19%), Postives = 98/135 (72.59%), Query Frame = 0
Query: 6 FPAKFLALISIFHLNSTIYA-DDAAVVTPFPCSNCNICQSACRPPPYEPPPL---PPSPP 65
FPAK LAL+ +F+LNS + A DDAA+ TP C NC ICQS CRPP EP PL PP PP
Sbjct: 2 FPAKLLALVVVFNLNSAVSATDDAAMATPISCDNCTICQSTCRPPQSEPLPLLPPPPPPP 61
Query: 66 PSIAEPEPLPVPNAPANCPPAAVQCCPFMPLPPPPPPPGPRNGYIYTPLYNESSSSFLKG 125
AEPEPLP+P APANCPP VQCC F+P PPPPP NG IYTP+YNESSSSFL+
Sbjct: 62 APYAEPEPLPIPVAPANCPPTIVQCCQFLPPPPPPPQATAGNGNIYTPIYNESSSSFLRV 121
Query: 126 GLVSVLGPVFGLIFI 137
GL S L PVFGL+ I
Sbjct: 122 GLGSALAPVFGLVAI 136
BLAST of Sed0020838 vs. NCBI nr
Match: KGN44024.1 (hypothetical protein Csa_011878 [Cucumis sativus]) HSP 1 Score: 146.7 bits (369), Expect = 1.4e-31 Identity = 86/134 (64.18%), Postives = 97/134 (72.39%), Query Frame = 0
Query: 6 FPAKFLALISIFHLNSTIYA-DDAAVVTPFPCSNCNICQSACRPPPYEPPPLPPSPPP-- 65
FPAK LAL+ +F+LN+ + A DDAA+ TP C NC ICQS C PPP EP PLP SPPP
Sbjct: 45 FPAKLLALVVVFNLNTAVSATDDAAMPTPISCDNCTICQSTCSPPPSEPLPLPLSPPPPS 104
Query: 66 SIAEPEPLPVPNAPANCPPAAVQCCPFMPLPPPPPPPGPRNGYIYTPLYNESSSSFLKGG 125
AEPEPLP P APANCPP VQCC F+P PPPPP NG +YTP+YN SSSSFL+ G
Sbjct: 105 PYAEPEPLPFPVAPANCPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYN-SSSSFLRVG 164
Query: 126 LVSVLGPVFGLIFI 137
L S L PVFGL+ I
Sbjct: 165 LGSALAPVFGLLAI 177
BLAST of Sed0020838 vs. NCBI nr
Match: XP_011659730.1 (leucine-rich repeat extensin-like protein 3 [Cucumis sativus]) HSP 1 Score: 146.7 bits (369), Expect = 1.4e-31 Identity = 86/134 (64.18%), Postives = 97/134 (72.39%), Query Frame = 0
Query: 6 FPAKFLALISIFHLNSTIYA-DDAAVVTPFPCSNCNICQSACRPPPYEPPPLPPSPPP-- 65
FPAK LAL+ +F+LN+ + A DDAA+ TP C NC ICQS C PPP EP PLP SPPP
Sbjct: 2 FPAKLLALVVVFNLNTAVSATDDAAMPTPISCDNCTICQSTCSPPPSEPLPLPLSPPPPS 61
Query: 66 SIAEPEPLPVPNAPANCPPAAVQCCPFMPLPPPPPPPGPRNGYIYTPLYNESSSSFLKGG 125
AEPEPLP P APANCPP VQCC F+P PPPPP NG +YTP+YN SSSSFL+ G
Sbjct: 62 PYAEPEPLPFPVAPANCPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYN-SSSSFLRVG 121
Query: 126 LVSVLGPVFGLIFI 137
L S L PVFGL+ I
Sbjct: 122 LGSALAPVFGLLAI 134
BLAST of Sed0020838 vs. ExPASy TrEMBL
Match: A0A1S3CI95 (sperm mitochondrial-associated cysteine-rich protein-like OS=Cucumis melo OX=3656 GN=LOC103501284 PE=4 SV=1) HSP 1 Score: 156.0 bits (393), Expect = 1.1e-34 Identity = 88/135 (65.19%), Postives = 98/135 (72.59%), Query Frame = 0
Query: 6 FPAKFLALISIFHLNSTIYA-DDAAVVTPFPCSNCNICQSACRPPPYEPPPL---PPSPP 65
FPAK LAL+ +F+LNS + A DDAA+ TP C NC ICQS CRPP EP PL PP PP
Sbjct: 2 FPAKLLALVVVFNLNSAVSATDDAAMATPISCDNCTICQSTCRPPQSEPLPLLPPPPPPP 61
Query: 66 PSIAEPEPLPVPNAPANCPPAAVQCCPFMPLPPPPPPPGPRNGYIYTPLYNESSSSFLKG 125
AEPEPLP+P APANCPP VQCC F+P PPPPP NG IYTP+YNESSSSFL+
Sbjct: 62 APYAEPEPLPIPVAPANCPPTIVQCCQFLPPPPPPPQATAGNGNIYTPIYNESSSSFLRV 121
Query: 126 GLVSVLGPVFGLIFI 137
GL S L PVFGL+ I
Sbjct: 122 GLGSALAPVFGLVAI 136
BLAST of Sed0020838 vs. ExPASy TrEMBL
Match: A0A0A0K536 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G111300 PE=4 SV=1) HSP 1 Score: 146.7 bits (369), Expect = 6.9e-32 Identity = 86/134 (64.18%), Postives = 97/134 (72.39%), Query Frame = 0
Query: 6 FPAKFLALISIFHLNSTIYA-DDAAVVTPFPCSNCNICQSACRPPPYEPPPLPPSPPP-- 65
FPAK LAL+ +F+LN+ + A DDAA+ TP C NC ICQS C PPP EP PLP SPPP
Sbjct: 45 FPAKLLALVVVFNLNTAVSATDDAAMPTPISCDNCTICQSTCSPPPSEPLPLPLSPPPPS 104
Query: 66 SIAEPEPLPVPNAPANCPPAAVQCCPFMPLPPPPPPPGPRNGYIYTPLYNESSSSFLKGG 125
AEPEPLP P APANCPP VQCC F+P PPPPP NG +YTP+YN SSSSFL+ G
Sbjct: 105 PYAEPEPLPFPVAPANCPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYN-SSSSFLRVG 164
Query: 126 LVSVLGPVFGLIFI 137
L S L PVFGL+ I
Sbjct: 165 LGSALAPVFGLLAI 177
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG7037325.1 | 2.1e-35 | 69.47 | hypothetical protein SDJN02_00950, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| KAG6607747.1 | 6.2e-35 | 68.70 | hypothetical protein SDJN03_01089, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_008463043.1 | 2.3e-34 | 65.19 | PREDICTED: sperm mitochondrial-associated cysteine-rich protein-like [Cucumis me... | [more] |
| KGN44024.1 | 1.4e-31 | 64.18 | hypothetical protein Csa_011878 [Cucumis sativus] | [more] |
| XP_011659730.1 | 1.4e-31 | 64.18 | leucine-rich repeat extensin-like protein 3 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A1S3CI95 | 1.1e-34 | 65.19 | sperm mitochondrial-associated cysteine-rich protein-like OS=Cucumis melo OX=365... | [more] |
| A0A0A0K536 | 6.9e-32 | 64.18 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G111300 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
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