Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGGCAAATCAAACCATATTTCAAAGTAATTGTTGGAGATGAGCTTTATTCATTCATTTTACGTTACAATTGTTATAGTGTAACCTTATTAATACATAAATTTTCAAAGTCAATAAATAAAAAAGGCAAGAAAAAGAAAAAAAGCAACAAAAGAATAAATTCTTTGATGTGAAAAAATTCAAGTATAAAAGAAGGTTAGGGAGTTGAAGGCGTTTGTATCTCAGAAAATGGCAACCTCACTTCCCAAAGTACGTTGCATTCAGGCACAGTGTATTGCTCAAGTACCTCGAATACATACATGAAGGTCCAAATGCAGGCTCACTCAAATACTCTAGTGAAACTGTAGTGAGCATATACACGAAGTTCGAGATCGTGCCGGCCAAGGCTGGGAGCCCCTTCGTGAACATAAGGTGCTGCAACAACCACAAGTACTTGGCCTCCTCCAACGACAACCTTCACATCATCGCACCCGTCGTTAAAGAGCCCCAAGAAGACAAGAACCGTTGGCCTTGCACCTTGTTCAGCCTACAAATACCCGCTGGCTTGGTTGAAGGCCACAAGATTAGGGATATCAGGCTTAATAATGATGTTGGCGTATATGCGGCCACCAGCGACATTCACAAGAATTGCCTCACATCTGGAAAGCAGCTTCTGTTCGATGACGAATTGCATGAGATCATCGACTATGAAACGATTTTCCAGCTGCCTAAGCATGCGCCTTTAAAGGCGACAATGAAAAGTATATTTTGA
mRNA sequence
ATGACTGGCAAATCAAACCATATTTCAAAGCACAGTGTATTGCTCAAGTACCTCGAATACATACATGAAGGTCCAAATGCAGGCTCACTCAAATACTCTAGTGAAACTGTAGTGAGCATATACACGAAGTTCGAGATCGTGCCGGCCAAGGCTGGGAGCCCCTTCGTGAACATAAGGTGCTGCAACAACCACAAGTACTTGGCCTCCTCCAACGACAACCTTCACATCATCGCACCCGTCGTTAAAGAGCCCCAAGAAGACAAGAACCGTTGGCCTTGCACCTTGTTCAGCCTACAAATACCCGCTGGCTTGGTTGAAGGCCACAAGATTAGGGATATCAGGCTTAATAATGATGTTGGCGTATATGCGGCCACCAGCGACATTCACAAGAATTGCCTCACATCTGGAAAGCAGCTTCTGTTCGATGACGAATTGCATGAGATCATCGACTATGAAACGATTTTCCAGCTGCCTAAGCATGCGCCTTTAAAGGCGACAATGAAAAGTATATTTTGA
Coding sequence (CDS)
ATGACTGGCAAATCAAACCATATTTCAAAGCACAGTGTATTGCTCAAGTACCTCGAATACATACATGAAGGTCCAAATGCAGGCTCACTCAAATACTCTAGTGAAACTGTAGTGAGCATATACACGAAGTTCGAGATCGTGCCGGCCAAGGCTGGGAGCCCCTTCGTGAACATAAGGTGCTGCAACAACCACAAGTACTTGGCCTCCTCCAACGACAACCTTCACATCATCGCACCCGTCGTTAAAGAGCCCCAAGAAGACAAGAACCGTTGGCCTTGCACCTTGTTCAGCCTACAAATACCCGCTGGCTTGGTTGAAGGCCACAAGATTAGGGATATCAGGCTTAATAATGATGTTGGCGTATATGCGGCCACCAGCGACATTCACAAGAATTGCCTCACATCTGGAAAGCAGCTTCTGTTCGATGACGAATTGCATGAGATCATCGACTATGAAACGATTTTCCAGCTGCCTAAGCATGCGCCTTTAAAGGCGACAATGAAAAGTATATTTTGA
Protein sequence
MTGKSNHISKHSVLLKYLEYIHEGPNAGSLKYSSETVVSIYTKFEIVPAKAGSPFVNIRCCNNHKYLASSNDNLHIIAPVVKEPQEDKNRWPCTLFSLQIPAGLVEGHKIRDIRLNNDVGVYAATSDIHKNCLTSGKQLLFDDELHEIIDYETIFQLPKHAPLKATMKSIF
Homology
BLAST of Sed0020823 vs. NCBI nr
Match:
XP_038875125.1 (uncharacterized protein LOC120067657 [Benincasa hispida])
HSP 1 Score: 131.0 bits (328), Expect = 1.0e-26
Identity = 67/155 (43.23%), Postives = 99/155 (63.87%), Query Frame = 0
Query: 16 KYLEYIHEGPNAGSLKYSSETVVSIYTKFEIVPAKAGSPFVNIRCCNNHKYLASSNDNLH 75
KYL+Y+HEGP G+L+YSS+ V ++++KF + P+K S +VNIRCC N+K+ ASSND+ H
Sbjct: 16 KYLQYLHEGPIKGNLQYSSDNVANMFSKFTLEPSKT-SNYVNIRCCYNNKFWASSNDDNH 75
Query: 76 IIAPVVKEPQEDKNRWPCTLFSLQIPAGLVEGHKIRDIRLNNDVGVYAATSDIHKNCLTS 135
+I P + +P E++ PCTLF + + A + + D+ L TS IH+NCLT+
Sbjct: 76 MITPSLSKPAENEFLSPCTLFRI-VKAPAEGAYYLLDV-LRQSYVCRCTTSKIHENCLTT 135
Query: 136 --GKQLLFDDELHEIIDYETIFQLPKHAPLKATMK 169
G Q + D H +ID+ETI LPKH K ++
Sbjct: 136 RYGNQDHYYDRSHILIDFETIVMLPKHVAFKCDIE 167
BLAST of Sed0020823 vs. NCBI nr
Match:
XP_038882401.1 (uncharacterized protein LOC120073669 [Benincasa hispida])
HSP 1 Score: 125.6 bits (314), Expect = 4.2e-25
Identity = 65/154 (42.21%), Postives = 94/154 (61.04%), Query Frame = 0
Query: 14 LLKYLEYIHEGPNAGSLKYSSETVVSIYTKFEIVPAKAGS-PFVNIRCCNNHKYLASSND 73
L KYL+Y+ GP +GSL+YSS+ +VS+YTKFE+ PAK+G +VNIRCC N+KYLASSND
Sbjct: 16 LKKYLQYLDHGPVSGSLQYSSDNMVSVYTKFELEPAKSGEINYVNIRCCYNNKYLASSND 75
Query: 74 NLHIIAPVVKEPQEDKNRWPCTLFSLQIPAGLVEGHKIRDIRLNNDVGVYAATSDIHKNC 133
+ +++ P V +P+ED WPCTLF + + + D+ V S+ + C
Sbjct: 76 DKYLVTPFVDKPKEDVKSWPCTLFKVGNYISSEGYYTLFDVWRQRLV-CPCINSNNYDAC 135
Query: 134 LTS--GKQLLFDDELHEIIDYETIFQLPKHAPLK 165
LT+ G ++H+ ID+E + LPK K
Sbjct: 136 LTTRYGSNEGNVQKIHQFIDFEALLVLPKRVAFK 168
BLAST of Sed0020823 vs. NCBI nr
Match:
XP_038904200.1 (uncharacterized protein LOC120090546 [Benincasa hispida])
HSP 1 Score: 124.0 bits (310), Expect = 1.2e-24
Identity = 66/151 (43.71%), Postives = 93/151 (61.59%), Query Frame = 0
Query: 16 KYLEYIHEGPNAGSLKYSSETVVSIYTKFEIVPAKAGSPFVNIRCCNNHKYLASSNDNLH 75
KYL+Y+ EG G+L+YSS VVS+ TKF + PAK S + +IRCC N+KYLASSND+
Sbjct: 16 KYLQYLPEGHLKGNLQYSSNIVVSLLTKFALEPAKK-SRYWHIRCCYNNKYLASSNDHNR 75
Query: 76 IIAPVVKEPQEDKNRWPCTLFSLQIPAGLVEGHKIRDIRLNNDVGVYAATSDIHKNCLTS 135
++ P V +P ED++ PCTLF++ +P + + D+ L V TS IH+NCLT+
Sbjct: 76 LVTPSVSKPTEDESSHPCTLFNI-VPGPTPGTYYLVDVLLQTYV-CRCTTSKIHQNCLTT 135
Query: 136 GKQLL--FDDELHEIIDYETIFQLPKHAPLK 165
++ D+LH D+E LPKH K
Sbjct: 136 RYDVIEKHSDKLHMFTDFENFIVLPKHVAFK 163
BLAST of Sed0020823 vs. NCBI nr
Match:
XP_004140600.1 (uncharacterized protein LOC101212789 [Cucumis sativus] >KGN46321.1 hypothetical protein Csa_004899 [Cucumis sativus])
HSP 1 Score: 117.9 bits (294), Expect = 8.8e-23
Identity = 61/161 (37.89%), Postives = 98/161 (60.87%), Query Frame = 0
Query: 10 KHSVLLKYLEYIHEGPNAGSLKYSSETVVSIYTKFEIVPAKAGSPFVNIRCCNNHKYLAS 69
++ + K+L+YIHEG G L+YSS+ +S+++KF + +K + F +IRCC N+KY AS
Sbjct: 10 RNKIAGKFLQYIHEGSLKGYLQYSSDNAMSMFSKFTLEQSKTTNYF-HIRCCYNNKYWAS 69
Query: 70 SNDNLHIIAPVVKEPQEDKNRWPCTLFSLQIPAGLVEGHKIRDIRLNNDVGVYAATSDIH 129
+ D H+++P V +P E++ WPCTLF + A + + D+ + V TS H
Sbjct: 70 AKDGDHMVSPFVSKPSENEFSWPCTLFRF-VQAPTEGTYYLFDVWRQSYV-CRCTTSKSH 129
Query: 130 KNCLTS--GKQLLFDDELHEIIDYETIFQLPKHAPLKATMK 169
++CLT+ G Q + D H +ID+ET+ LPKH +K +K
Sbjct: 130 EDCLTTRYGNQDHYYDRTHILIDFETLIVLPKHIVIKGDLK 167
BLAST of Sed0020823 vs. NCBI nr
Match:
XP_004145086.3 (uncharacterized protein LOC105434387 [Cucumis sativus])
HSP 1 Score: 114.0 bits (284), Expect = 1.3e-21
Identity = 63/165 (38.18%), Postives = 96/165 (58.18%), Query Frame = 0
Query: 3 GKSNHISKHSVLLKYLEYIHEGPNAGSLKYSSETVVSIYTKFEIVPAKAGSPFVNIRCCN 62
G NH+ KYL+Y+ +G G+L+YSS+ ++ +TKFEIVP K G + +I+CC
Sbjct: 9 GFQNHVEG-----KYLQYLSDGFLRGNLQYSSDQALTPFTKFEIVPDKDGK-YWHIKCCY 68
Query: 63 NHKYLASSNDNLHIIAPVVKEPQEDKNRWPCTLFSLQIPAGLVEGHKIRDIRLNNDVGVY 122
N KYLASSND+ + P V +P E+++ WPCTLF+ IP + + D+ L
Sbjct: 69 NDKYLASSNDHNRFVTPFVSKPSENESSWPCTLFNF-IPGPTTGTYYLFDVLLQT-YARR 128
Query: 123 AATSDIHKNCLTS---GKQLLFDDELHEIIDYETIFQLPKHAPLK 165
+S IH + LT+ + DD+L ++D+E I +LPK+ K
Sbjct: 129 CTSSRIHPDVLTTRYRRDEKRHDDKLVVLVDFENIIRLPKYLSFK 165
BLAST of Sed0020823 vs. ExPASy TrEMBL
Match:
A0A0A0KEW7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G083560 PE=4 SV=1)
HSP 1 Score: 117.9 bits (294), Expect = 4.3e-23
Identity = 61/161 (37.89%), Postives = 98/161 (60.87%), Query Frame = 0
Query: 10 KHSVLLKYLEYIHEGPNAGSLKYSSETVVSIYTKFEIVPAKAGSPFVNIRCCNNHKYLAS 69
++ + K+L+YIHEG G L+YSS+ +S+++KF + +K + F +IRCC N+KY AS
Sbjct: 10 RNKIAGKFLQYIHEGSLKGYLQYSSDNAMSMFSKFTLEQSKTTNYF-HIRCCYNNKYWAS 69
Query: 70 SNDNLHIIAPVVKEPQEDKNRWPCTLFSLQIPAGLVEGHKIRDIRLNNDVGVYAATSDIH 129
+ D H+++P V +P E++ WPCTLF + A + + D+ + V TS H
Sbjct: 70 AKDGDHMVSPFVSKPSENEFSWPCTLFRF-VQAPTEGTYYLFDVWRQSYV-CRCTTSKSH 129
Query: 130 KNCLTS--GKQLLFDDELHEIIDYETIFQLPKHAPLKATMK 169
++CLT+ G Q + D H +ID+ET+ LPKH +K +K
Sbjct: 130 EDCLTTRYGNQDHYYDRTHILIDFETLIVLPKHIVIKGDLK 167
BLAST of Sed0020823 vs. ExPASy TrEMBL
Match:
A0A0A0KEW1 (Agglutinin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G082530 PE=4 SV=1)
HSP 1 Score: 114.0 bits (284), Expect = 6.2e-22
Identity = 63/165 (38.18%), Postives = 96/165 (58.18%), Query Frame = 0
Query: 3 GKSNHISKHSVLLKYLEYIHEGPNAGSLKYSSETVVSIYTKFEIVPAKAGSPFVNIRCCN 62
G NH+ KYL+Y+ +G G+L+YSS+ ++ +TKFEIVP K G + +I+CC
Sbjct: 9 GFQNHVEG-----KYLQYLSDGFLRGNLQYSSDQALTPFTKFEIVPDKDGK-YWHIKCCY 68
Query: 63 NHKYLASSNDNLHIIAPVVKEPQEDKNRWPCTLFSLQIPAGLVEGHKIRDIRLNNDVGVY 122
N KYLASSND+ + P V +P E+++ WPCTLF+ IP + + D+ L
Sbjct: 69 NDKYLASSNDHNRFVTPFVSKPSENESSWPCTLFNF-IPGPTTGTYYLFDVLLQT-YARR 128
Query: 123 AATSDIHKNCLTS---GKQLLFDDELHEIIDYETIFQLPKHAPLK 165
+S IH + LT+ + DD+L ++D+E I +LPK+ K
Sbjct: 129 CTSSRIHPDVLTTRYRRDEKRHDDKLVVLVDFENIIRLPKYLSFK 165
BLAST of Sed0020823 vs. ExPASy TrEMBL
Match:
A0A0A0KA07 (Agglutinin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G083530 PE=4 SV=1)
HSP 1 Score: 112.1 bits (279), Expect = 2.3e-21
Identity = 60/165 (36.36%), Postives = 95/165 (57.58%), Query Frame = 0
Query: 3 GKSNHISKHSVLLKYLEYIHEGPNAGSLKYSSETVVSIYTKFEIVPAKAGSPFVNIRCCN 62
G NH + KYLEY+ +G G LKYSS+ ++ +TKFEIVP K G + +I+CC
Sbjct: 9 GFQNHAER-----KYLEYVRDGFLKGKLKYSSDQALTPFTKFEIVPDKDGK-YWHIKCCY 68
Query: 63 NHKYLASSNDNLHIIAPVVKEPQEDKNRWPCTLFSLQIPAGLVEGHKIRDIRLNNDVGVY 122
N KYLAS+ND +AP V +P E+++ WPCTLF++ IP + + + D+ +
Sbjct: 69 NGKYLASTNDGNRFVAPFVSKPSENESSWPCTLFNI-IPGPTIGTYYLFDVMIYT-YACR 128
Query: 123 AATSDIHKNCLT---SGKQLLFDDELHEIIDYETIFQLPKHAPLK 165
+H + LT + ++ D+L ++D+E + +LPK+ K
Sbjct: 129 CTDRRVHHDVLTTIYNLEEARDSDKLILLVDFENVIRLPKYVAFK 165
BLAST of Sed0020823 vs. ExPASy TrEMBL
Match:
A0A5A7T932 (Agglutinin domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001150 PE=4 SV=1)
HSP 1 Score: 105.5 bits (262), Expect = 2.2e-19
Identity = 56/152 (36.84%), Postives = 90/152 (59.21%), Query Frame = 0
Query: 16 KYLEYIHEGPNAGSLKYSSETVVSIYTKFEIVPAKAGSPFVNIRCCNNHKYLASSNDNLH 75
KYL+Y+ G G+L++SS+ ++ +TKFEI P K G + +I+CC N KYLASSN++
Sbjct: 17 KYLQYLSNGFLKGNLQFSSDQALTPFTKFEIEPDKDGK-YWHIKCCYNDKYLASSNNHNR 76
Query: 76 IIAPVVKEPQEDKNRWPCTLFSLQIPAGLVEGHKIRDIRLNNDVGVYAATSDIHKNCLTS 135
+ P V +P E+++ WPCTLF++ IP + + D+ L TS H + LT+
Sbjct: 77 FVTPFVSKPSENESSWPCTLFNI-IPGPTTGTYYLFDVFLQT-YACRCTTSKNHLDVLTT 136
Query: 136 ---GKQLLFDDELHEIIDYETIFQLPKHAPLK 165
+ + D+L ++D+E I +LPK+ K
Sbjct: 137 RYRHDEKQYGDKLLLLVDFENIIRLPKYVTFK 165
BLAST of Sed0020823 vs. ExPASy TrEMBL
Match:
A0A1S4E3C5 (uncharacterized protein LOC103498965 OS=Cucumis melo OX=3656 GN=LOC103498965 PE=4 SV=1)
HSP 1 Score: 105.5 bits (262), Expect = 2.2e-19
Identity = 58/152 (38.16%), Postives = 91/152 (59.87%), Query Frame = 0
Query: 16 KYLEYIHEGPNAGSLKYSSETVVSIYTKFEIVPAKAGSPFVNIRCCNNHKYLASSNDNLH 75
KYL+YI +G G+L+YSS+ ++ +TKFEIVP K G + +I+CC N KYLASS+D+
Sbjct: 17 KYLQYIPDGHLRGNLQYSSDQALTPFTKFEIVPDKDGK-YWHIKCCYNDKYLASSDDHNR 76
Query: 76 IIAPVVKEPQEDKNRWPCTLFSLQIPAGLVEGHKIRDIRLNNDVGVYAATSDIHKNCLTS 135
+ P V +P E+++ PCT+F++ I + + D+ L +S IH N LT+
Sbjct: 77 FVTPFVSKPSENESSRPCTMFNI-ISGPTTGTYYLFDVSLQT-YARRCTSSRIHPNVLTT 136
Query: 136 ---GKQLLFDDELHEIIDYETIFQLPKHAPLK 165
+ DD+L ++D+E I +LPK+ K
Sbjct: 137 RYRRDENRHDDKLVLLVDFENIIRLPKYLSFK 165
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038875125.1 | 1.0e-26 | 43.23 | uncharacterized protein LOC120067657 [Benincasa hispida] | [more] |
XP_038882401.1 | 4.2e-25 | 42.21 | uncharacterized protein LOC120073669 [Benincasa hispida] | [more] |
XP_038904200.1 | 1.2e-24 | 43.71 | uncharacterized protein LOC120090546 [Benincasa hispida] | [more] |
XP_004140600.1 | 8.8e-23 | 37.89 | uncharacterized protein LOC101212789 [Cucumis sativus] >KGN46321.1 hypothetical ... | [more] |
XP_004145086.3 | 1.3e-21 | 38.18 | uncharacterized protein LOC105434387 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KEW7 | 4.3e-23 | 37.89 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G083560 PE=4 SV=1 | [more] |
A0A0A0KEW1 | 6.2e-22 | 38.18 | Agglutinin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G082530 ... | [more] |
A0A0A0KA07 | 2.3e-21 | 36.36 | Agglutinin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G083530 ... | [more] |
A0A5A7T932 | 2.2e-19 | 36.84 | Agglutinin domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
A0A1S4E3C5 | 2.2e-19 | 38.16 | uncharacterized protein LOC103498965 OS=Cucumis melo OX=3656 GN=LOC103498965 PE=... | [more] |
Match Name | E-value | Identity | Description | |